Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82994.t1 | XP_013466649.1 | 89.1 | 211 | 23 | 0 | 1 | 211 | 1 | 211 | 4.50E-100 | 374 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82994.t1 | Q67ZF6 | 50.0 | 202 | 100 | 1 | 9 | 210 | 20 | 220 | 2.2e-55 | 216.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82994.t1 | A0A072VRC8 | 89.1 | 211 | 23 | 0 | 1 | 211 | 1 | 211 | 3.3e-100 | 374.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78729 | MS.gene82994 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82994.t1 | MTR_1g033390 | 89.100 | 211 | 23 | 0 | 1 | 211 | 1 | 211 | 2.23e-135 | 378 |
| MS.gene82994.t1 | MTR_1g033360 | 43.216 | 199 | 112 | 1 | 10 | 208 | 16 | 213 | 6.68e-56 | 177 |
| MS.gene82994.t1 | MTR_1g100643 | 39.048 | 210 | 125 | 1 | 1 | 207 | 5 | 214 | 6.52e-55 | 175 |
| MS.gene82994.t1 | MTR_6g017105 | 37.436 | 195 | 118 | 1 | 14 | 204 | 19 | 213 | 3.25e-42 | 142 |
| MS.gene82994.t1 | MTR_1g100643 | 39.130 | 161 | 95 | 1 | 50 | 207 | 1 | 161 | 1.40e-39 | 134 |
| MS.gene82994.t1 | MTR_5g053250 | 35.762 | 151 | 92 | 2 | 45 | 191 | 56 | 205 | 8.85e-28 | 105 |
| MS.gene82994.t1 | MTR_5g053250 | 35.616 | 146 | 89 | 2 | 50 | 191 | 1 | 145 | 9.76e-26 | 99.0 |
| MS.gene82994.t1 | MTR_5g053250 | 29.032 | 217 | 118 | 5 | 10 | 191 | 17 | 232 | 5.67e-22 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82994.t1 | AT1G14730 | 50.000 | 202 | 100 | 1 | 9 | 210 | 20 | 220 | 2.66e-73 | 221 |
| MS.gene82994.t1 | AT4G25570 | 36.449 | 214 | 133 | 1 | 1 | 211 | 5 | 218 | 4.47e-53 | 171 |
| MS.gene82994.t1 | AT4G25570 | 36.449 | 214 | 133 | 1 | 1 | 211 | 46 | 259 | 3.56e-52 | 169 |
| MS.gene82994.t1 | AT5G38630 | 37.811 | 201 | 118 | 2 | 15 | 208 | 17 | 217 | 3.50e-45 | 150 |
| MS.gene82994.t1 | AT1G26100 | 33.523 | 176 | 105 | 4 | 10 | 183 | 15 | 180 | 9.58e-25 | 97.4 |
Find 46 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTGCTTGTTTGGTTTGC+AGG | 0.165329 | 1.4:-18171460 | MS.gene82994:intron |
| TTAAAATTTAACAGCTATTA+TGG | 0.166099 | 1.4:-18171652 | MS.gene82994:intron |
| CCGCATCTTTACAGTCTTCA+TGG | 0.276421 | 1.4:-18171501 | MS.gene82994:CDS |
| TTGGTTACATTCTTGGTTCC+TGG | 0.284163 | 1.4:-18171056 | MS.gene82994:CDS |
| GCAATATGTGCTGCATTAAC+AGG | 0.288180 | 1.4:-18170963 | MS.gene82994:CDS |
| GGTCTTTCAATTCTATTGTT+TGG | 0.306287 | 1.4:-18170870 | MS.gene82994:CDS |
| CTTCACCAGCAAGGAAAATA+AGG | 0.306596 | 1.4:+18172691 | None:intergenic |
| CCTTCATACTCATACTTGTT+TGG | 0.309677 | 1.4:-18172904 | MS.gene82994:CDS |
| AGGCTCAGGAACATCATTAA+AGG | 0.317240 | 1.4:+18172711 | None:intergenic |
| ATTGTCACCTTCTGCTTGTT+TGG | 0.329434 | 1.4:-18171468 | MS.gene82994:CDS |
| CTTGTTGCTTCTTGTGCTCC+AGG | 0.336655 | 1.4:+18171038 | None:intergenic |
| TCAGGTTTGGCTCATTTGTT+TGG | 0.341278 | 1.4:-18172935 | MS.gene82994:CDS |
| GTCTTTGTGCGGGTACCGTT+TGG | 0.366595 | 1.4:+18171625 | None:intergenic |
| ACATCAGACAGAAACTAATT+TGG | 0.367590 | 1.4:-18170904 | MS.gene82994:CDS |
| ACTAATTTGGTCACCTTCAC+TGG | 0.396568 | 1.4:-18170891 | MS.gene82994:CDS |
| TATCAGGAAGCTTGTTCATA+TGG | 0.419940 | 1.4:-18171601 | MS.gene82994:CDS |
| TACAGTCTTCATGGATGGAT+TGG | 0.420550 | 1.4:-18171492 | MS.gene82994:CDS |
| TGCCATTGTAATGTCAGGTT+TGG | 0.435462 | 1.4:-18172948 | MS.gene82994:CDS |
| TGCTGCATTAACAGGGTTGA+TGG | 0.454100 | 1.4:-18170955 | MS.gene82994:CDS |
| TACCCGCACAAAGACATATC+AGG | 0.463004 | 1.4:-18171617 | MS.gene82994:CDS |
| GGCTCAGGAACATCATTAAA+GGG | 0.463466 | 1.4:+18172712 | None:intergenic |
| ATTGACTATGCTTCCGTGGA+TGG | 0.467721 | 1.4:-18172860 | MS.gene82994:CDS |
| GCGGAATATTTAGCATATCA+TGG | 0.474457 | 1.4:+18171520 | None:intergenic |
| ATGAGTGCCATTGTAATGTC+AGG | 0.479739 | 1.4:-18172953 | MS.gene82994:CDS |
| ATCTTTACAGTCTTCATGGA+TGG | 0.510201 | 1.4:-18171497 | MS.gene82994:CDS |
| CAAGAGCTAGAGTGCTTCCA+TGG | 0.524373 | 1.4:-18171019 | MS.gene82994:CDS |
| AGCTATTATGGCATTCCAAA+CGG | 0.526255 | 1.4:-18171640 | MS.gene82994:CDS |
| CTTCCTGATATGTCTTTGTG+CGG | 0.537316 | 1.4:+18171614 | None:intergenic |
| CAGCAAGGAAAATAAGGCTC+AGG | 0.541270 | 1.4:+18172697 | None:intergenic |
| GGCTGGTTTCTTGAAACTGA+GGG | 0.543574 | 1.4:-18170928 | MS.gene82994:CDS |
| CCAAACAAGTATGAGTATGA+AGG | 0.550105 | 1.4:+18172904 | None:intergenic |
| ACAGGGTTGATGGAGAAGGC+TGG | 0.560279 | 1.4:-18170945 | MS.gene82994:CDS |
| GTGCTTCCATGGCACAAAGT+TGG | 0.562421 | 1.4:-18171008 | MS.gene82994:CDS |
| TTACCACCAACTTTGTGCCA+TGG | 0.569979 | 1.4:+18171002 | None:intergenic |
| TTCCTGATATGTCTTTGTGC+GGG | 0.571362 | 1.4:+18171615 | None:intergenic |
| CTTCCATGGCACAAAGTTGG+TGG | 0.575822 | 1.4:-18171005 | MS.gene82994:CDS |
| TAGAATTGAAAGACCAGTGA+AGG | 0.581454 | 1.4:+18170878 | None:intergenic |
| TGCATATACCTTCACCAGCA+AGG | 0.583434 | 1.4:+18172682 | None:intergenic |
| ATTAACAGGGTTGATGGAGA+AGG | 0.597536 | 1.4:-18170949 | MS.gene82994:CDS |
| AGGCTGGTTTCTTGAAACTG+AGG | 0.602429 | 1.4:-18170929 | MS.gene82994:CDS |
| AGGGATTGACTATGCTTCCG+TGG | 0.627678 | 1.4:-18172864 | MS.gene82994:CDS |
| CTGCAAACCAAACAAGCAGA+AGG | 0.637468 | 1.4:+18171461 | None:intergenic |
| CCATGAAGACTGTAAAGATG+CGG | 0.657005 | 1.4:+18171501 | None:intergenic |
| AGCCAAACCTGACATTACAA+TGG | 0.660651 | 1.4:+18172946 | None:intergenic |
| CAATATGTGCTGCATTAACA+GGG | 0.682347 | 1.4:-18170962 | MS.gene82994:CDS |
| GAAGACGCGAAATCCATCCA+CGG | 0.694348 | 1.4:+18172847 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAAAAACAATTTAATTAA+GGG | + | chr1.4:18171366-18171385 | None:intergenic | 10.0% |
| !!! | TCATATATAAATGTTTTTTT+AGG | - | chr1.4:18172367-18172386 | MS.gene82994:intron | 10.0% |
| !! | ATATATCTCAATTTATTCAT+TGG | - | chr1.4:18172104-18172123 | MS.gene82994:intron | 15.0% |
| !! | CTAGAAAAACAATTTAATTA+AGG | + | chr1.4:18171367-18171386 | None:intergenic | 15.0% |
| !! | TAAAATATTAGAGATGTTAT+GGG | + | chr1.4:18171903-18171922 | None:intergenic | 15.0% |
| !! | TTAAAATTTAACAGCTATTA+TGG | - | chr1.4:18172137-18172156 | MS.gene82994:intron | 15.0% |
| !!! | AAAAACAATCAAATAGTTTT+AGG | - | chr1.4:18172566-18172585 | MS.gene82994:intron | 15.0% |
| !!! | CGAATTTTAGAATTTAAATA+GGG | + | chr1.4:18172442-18172461 | None:intergenic | 15.0% |
| !!! | TCGAATTTTAGAATTTAAAT+AGG | + | chr1.4:18172443-18172462 | None:intergenic | 15.0% |
| !!! | TTTTTTAGGTAAAAATAGTT+TGG | - | chr1.4:18172381-18172400 | MS.gene82994:intron | 15.0% |
| !! | CTAAAATATTAGAGATGTTA+TGG | + | chr1.4:18171904-18171923 | None:intergenic | 20.0% |
| !! | TAAATTTCATTTGCATATAG+AGG | + | chr1.4:18171508-18171527 | None:intergenic | 20.0% |
| !! | TTTAACATACATGATCATAT+GGG | + | chr1.4:18171695-18171714 | None:intergenic | 20.0% |
| !!! | AAATAGTTTTAGGATATGTT+CGG | - | chr1.4:18172576-18172595 | MS.gene82994:intron | 20.0% |
| !!! | AGAAAGTGTTAAAAAAGAAT+AGG | - | chr1.4:18171714-18171733 | MS.gene82994:intron | 20.0% |
| !!! | ATGATTTTGACCATAAAAAA+AGG | - | chr1.4:18171875-18171894 | MS.gene82994:intron | 20.0% |
| !!! | ATTTCAATGTGTTTTTTTTG+AGG | - | chr1.4:18172466-18172485 | MS.gene82994:intron | 20.0% |
| !!! | GATATACTGACTTTAATAAT+AGG | - | chr1.4:18172669-18172688 | MS.gene82994:intron | 20.0% |
| !!! | GTTTTTTTTGAGGTTTTATA+GGG | - | chr1.4:18172476-18172495 | MS.gene82994:intron | 20.0% |
| !!! | TGGTAAAGTACTATTTTTTA+TGG | - | chr1.4:18172804-18172823 | MS.gene82994:intron | 20.0% |
| !!! | TGTTTTTTTTGAGGTTTTAT+AGG | - | chr1.4:18172475-18172494 | MS.gene82994:intron | 20.0% |
| !!! | TTGTTTTCTAGAAAGAAAAA+GGG | + | chr1.4:18171316-18171335 | None:intergenic | 20.0% |
| ! | CTTTAACATACATGATCATA+TGG | + | chr1.4:18171696-18171715 | None:intergenic | 25.0% |
| ! | TATGTAACATTTGACAACAA+AGG | + | chr1.4:18171000-18171019 | None:intergenic | 25.0% |
| !! | AAAGTTGATCATCACAATTT+CGG | - | chr1.4:18171948-18171967 | MS.gene82994:intron | 25.0% |
| !! | ATATTGTTGATTAATTGCAG+TGG | - | chr1.4:18172701-18172720 | MS.gene82994:CDS | 25.0% |
| !! | CAAAATCATCTCCTTTTAAT+GGG | + | chr1.4:18171864-18171883 | None:intergenic | 25.0% |
| !! | TATTGTTGATTAATTGCAGT+GGG | - | chr1.4:18172702-18172721 | MS.gene82994:CDS | 25.0% |
| !! | TCAAAATCATCTCCTTTTAA+TGG | + | chr1.4:18171865-18171884 | None:intergenic | 25.0% |
| !! | TCTCAATTTATTCATTGGTT+TGG | - | chr1.4:18172109-18172128 | MS.gene82994:intron | 25.0% |
| !!! | CTCTTTGAAACATACTTTAA+TGG | + | chr1.4:18171201-18171220 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCTAGAAAGAAAA+AGG | + | chr1.4:18171317-18171336 | None:intergenic | 25.0% |
| AAACATACACTTAGTTGTCA+TGG | - | chr1.4:18172041-18172060 | MS.gene82994:intron | 30.0% | |
| AACTAAATGTGCCCATTAAA+AGG | - | chr1.4:18171850-18171869 | MS.gene82994:intron | 30.0% | |
| ACATCAGACAGAAACTAATT+TGG | - | chr1.4:18172885-18172904 | MS.gene82994:CDS | 30.0% | |
| ATTCTAAATCCAAACTGCAT+AGG | - | chr1.4:18172515-18172534 | MS.gene82994:intron | 30.0% | |
| ATTCTCATTTAAACATGCAC+CGG | + | chr1.4:18171571-18171590 | None:intergenic | 30.0% | |
| CTTTGATGTTTATTGTTTGC+AGG | - | chr1.4:18171050-18171069 | MS.gene82994:CDS | 30.0% | |
| GGTCTTTCAATTCTATTGTT+TGG | - | chr1.4:18172919-18172938 | MS.gene82994:CDS | 30.0% | |
| GGTTGTTTACAGAAAATTGA+AGG | - | chr1.4:18172597-18172616 | MS.gene82994:intron | 30.0% | |
| TTCTAAATCCAAACTGCATA+GGG | - | chr1.4:18172516-18172535 | MS.gene82994:intron | 30.0% | |
| TTTGTCCCATTTAAACTAAC+CGG | - | chr1.4:18171549-18171568 | MS.gene82994:CDS | 30.0% | |
| ! | GAAGTGTCTATTAAATTCAG+AGG | + | chr1.4:18171746-18171765 | None:intergenic | 30.0% |
| ! | TGAATCCATCTCTTTTCATA+TGG | + | chr1.4:18171768-18171787 | None:intergenic | 30.0% |
| ! | TTTCTAGAAAGAAAAAGGGA+GGG | + | chr1.4:18171312-18171331 | None:intergenic | 30.0% |
| !! | ACAGAAAATTGAAGGTGTTT+AGG | - | chr1.4:18172605-18172624 | MS.gene82994:intron | 30.0% |
| !! | CACTTGATTGCTATTGTTTT+TGG | - | chr1.4:18172216-18172235 | MS.gene82994:intron | 30.0% |
| !! | TTTTAATGGGCACATTTAGT+TGG | + | chr1.4:18171851-18171870 | None:intergenic | 30.0% |
| !! | TTTTCTAGAAAGAAAAAGGG+AGG | + | chr1.4:18171313-18171332 | None:intergenic | 30.0% |
| !!! | GTTATGGGTACCTTTTTTTA+TGG | + | chr1.4:18171888-18171907 | None:intergenic | 30.0% |
| AGCTATTATGGCATTCCAAA+CGG | - | chr1.4:18172149-18172168 | MS.gene82994:intron | 35.0% | |
| ATCTTTACAGTCTTCATGGA+TGG | - | chr1.4:18172292-18172311 | MS.gene82994:intron | 35.0% | |
| CAATATGTGCTGCATTAACA+GGG | - | chr1.4:18172827-18172846 | MS.gene82994:intron | 35.0% | |
| CACTTCCATATGAAAAGAGA+TGG | - | chr1.4:18171760-18171779 | MS.gene82994:intron | 35.0% | |
| CCAAACAAGTATGAGTATGA+AGG | + | chr1.4:18170888-18170907 | None:intergenic | 35.0% | |
| CCTTCATACTCATACTTGTT+TGG | - | chr1.4:18170885-18170904 | MS.gene82994:CDS | 35.0% | |
| GCGGAATATTTAGCATATCA+TGG | + | chr1.4:18172272-18172291 | None:intergenic | 35.0% | |
| TAGAATTGAAAGACCAGTGA+AGG | + | chr1.4:18172914-18172933 | None:intergenic | 35.0% | |
| TAGATTAACGATGACTTCCA+AGG | + | chr1.4:18172022-18172041 | None:intergenic | 35.0% | |
| ! | TATAGGGTTTTCATGCAGTT+CGG | - | chr1.4:18172492-18172511 | MS.gene82994:intron | 35.0% |
| ! | TATCAGGAAGCTTGTTCATA+TGG | - | chr1.4:18172188-18172207 | MS.gene82994:intron | 35.0% |
| !! | ATGCACCGGTTAGTTTAAAT+GGG | + | chr1.4:18171557-18171576 | None:intergenic | 35.0% |
| !! | GATTAATTGCAGTGGGTTTT+TGG | - | chr1.4:18172709-18172728 | MS.gene82994:CDS | 35.0% |
| !!! | GCTATTGTTTTTGGCATAGT+TGG | - | chr1.4:18172225-18172244 | MS.gene82994:intron | 35.0% |
| !!! | TTTTGGCTTGGTTACATTCT+TGG | - | chr1.4:18172726-18172745 | MS.gene82994:intron | 35.0% |
| ACAATGTCACCCTATTTCCT+TGG | - | chr1.4:18172002-18172021 | MS.gene82994:intron | 40.0% | |
| ACGATGACTTCCAAGGAAAT+AGG | + | chr1.4:18172015-18172034 | None:intergenic | 40.0% | |
| ACTAATTTGGTCACCTTCAC+TGG | - | chr1.4:18172898-18172917 | MS.gene82994:CDS | 40.0% | |
| AGCCAAACCTGACATTACAA+TGG | + | chr1.4:18170846-18170865 | None:intergenic | 40.0% | |
| AGGCTCAGGAACATCATTAA+AGG | + | chr1.4:18171081-18171100 | None:intergenic | 40.0% | |
| ATTGTCACCTTCTGCTTGTT+TGG | - | chr1.4:18172321-18172340 | MS.gene82994:intron | 40.0% | |
| CCATGAAGACTGTAAAGATG+CGG | + | chr1.4:18172291-18172310 | None:intergenic | 40.0% | |
| CGATGACTTCCAAGGAAATA+GGG | + | chr1.4:18172014-18172033 | None:intergenic | 40.0% | |
| CTTCACCAGCAAGGAAAATA+AGG | + | chr1.4:18171101-18171120 | None:intergenic | 40.0% | |
| CTTCCTGATATGTCTTTGTG+CGG | + | chr1.4:18172178-18172197 | None:intergenic | 40.0% | |
| GCAATATGTGCTGCATTAAC+AGG | - | chr1.4:18172826-18172845 | MS.gene82994:intron | 40.0% | |
| GGCTCAGGAACATCATTAAA+GGG | + | chr1.4:18171080-18171099 | None:intergenic | 40.0% | |
| TACAGTCTTCATGGATGGAT+TGG | - | chr1.4:18172297-18172316 | MS.gene82994:intron | 40.0% | |
| TAGTAAGATATGACTCCGAG+AGG | + | chr1.4:18171144-18171163 | None:intergenic | 40.0% | |
| TGCCATTGTAATGTCAGGTT+TGG | - | chr1.4:18170841-18170860 | MS.gene82994:CDS | 40.0% | |
| TTCCTGATATGTCTTTGTGC+GGG | + | chr1.4:18172177-18172196 | None:intergenic | 40.0% | |
| TTGGTTACATTCTTGGTTCC+TGG | - | chr1.4:18172733-18172752 | MS.gene82994:intron | 40.0% | |
| ! | ATGAGTGCCATTGTAATGTC+AGG | - | chr1.4:18170836-18170855 | MS.gene82994:CDS | 40.0% |
| ! | GGTTGTTACATTTTCGCGAA+GGG | - | chr1.4:18170906-18170925 | MS.gene82994:CDS | 40.0% |
| ! | TCAGGTTTGGCTCATTTGTT+TGG | - | chr1.4:18170854-18170873 | MS.gene82994:CDS | 40.0% |
| ! | TGGTTGTTACATTTTCGCGA+AGG | - | chr1.4:18170905-18170924 | MS.gene82994:CDS | 40.0% |
| !! | ATTAACAGGGTTGATGGAGA+AGG | - | chr1.4:18172840-18172859 | MS.gene82994:intron | 40.0% |
| !! | CATGCACCGGTTAGTTTAAA+TGG | + | chr1.4:18171558-18171577 | None:intergenic | 40.0% |
| !! | CTTATTTTCCTTGCTGGTGA+AGG | - | chr1.4:18171099-18171118 | MS.gene82994:intron | 40.0% |
| ATTGACTATGCTTCCGTGGA+TGG | - | chr1.4:18170929-18170948 | MS.gene82994:CDS | 45.0% | |
| CAGCAAGGAAAATAAGGCTC+AGG | + | chr1.4:18171095-18171114 | None:intergenic | 45.0% | |
| CCGCATCTTTACAGTCTTCA+TGG | - | chr1.4:18172288-18172307 | MS.gene82994:intron | 45.0% | |
| CTGCAAACCAAACAAGCAGA+AGG | + | chr1.4:18172331-18172350 | None:intergenic | 45.0% | |
| TAAGATATGACTCCGAGAGG+AGG | + | chr1.4:18171141-18171160 | None:intergenic | 45.0% | |
| TACCCGCACAAAGACATATC+AGG | - | chr1.4:18172172-18172191 | MS.gene82994:intron | 45.0% | |
| TGCATATACCTTCACCAGCA+AGG | + | chr1.4:18171110-18171129 | None:intergenic | 45.0% | |
| TGCTGCATTAACAGGGTTGA+TGG | - | chr1.4:18172834-18172853 | MS.gene82994:intron | 45.0% | |
| TTACCACCAACTTTGTGCCA+TGG | + | chr1.4:18172790-18172809 | None:intergenic | 45.0% | |
| !! | AGGCTGGTTTCTTGAAACTG+AGG | - | chr1.4:18172860-18172879 | MS.gene82994:CDS | 45.0% |
| !! | CTTCTGCTTGTTTGGTTTGC+AGG | - | chr1.4:18172329-18172348 | MS.gene82994:intron | 45.0% |
| !! | GGCTGGTTTCTTGAAACTGA+GGG | - | chr1.4:18172861-18172880 | MS.gene82994:CDS | 45.0% |
| !!! | ATTGCAGTGGGTTTTTGGCT+TGG | - | chr1.4:18172714-18172733 | MS.gene82994:CDS | 45.0% |
| !!! | CTGAGCCTTATTTTCCTTGC+TGG | - | chr1.4:18171093-18171112 | MS.gene82994:intron | 45.0% |
| AGGGATTGACTATGCTTCCG+TGG | - | chr1.4:18170925-18170944 | MS.gene82994:CDS | 50.0% | |
| AGGGCACGCGAGAAACTTAT+AGG | + | chr1.4:18172423-18172442 | None:intergenic | 50.0% | |
| CTTCCATGGCACAAAGTTGG+TGG | - | chr1.4:18172784-18172803 | MS.gene82994:intron | 50.0% | |
| GAAGACGCGAAATCCATCCA+CGG | + | chr1.4:18170945-18170964 | None:intergenic | 50.0% | |
| GCGTGAGAAGCTCATATGGT+AGG | - | chr1.4:18172540-18172559 | MS.gene82994:intron | 50.0% | |
| GGGCACGCGAGAAACTTATA+GGG | + | chr1.4:18172422-18172441 | None:intergenic | 50.0% | |
| GTGCTTCCATGGCACAAAGT+TGG | - | chr1.4:18172781-18172800 | MS.gene82994:intron | 50.0% | |
| ! | CAAGAGCTAGAGTGCTTCCA+TGG | - | chr1.4:18172770-18172789 | MS.gene82994:intron | 50.0% |
| ! | CTTGTTGCTTCTTGTGCTCC+AGG | + | chr1.4:18172754-18172773 | None:intergenic | 50.0% |
| TGCACTGCACTTCCTCCTCT+CGG | - | chr1.4:18171126-18171145 | MS.gene82994:intron | 55.0% | |
| ! | GTCTTTGTGCGGGTACCGTT+TGG | + | chr1.4:18172167-18172186 | None:intergenic | 55.0% |
| !! | ACAGGGTTGATGGAGAAGGC+TGG | - | chr1.4:18172844-18172863 | MS.gene82994:CDS | 55.0% |
| CTCACGCGCCCTATGCAGTT+TGG | + | chr1.4:18172527-18172546 | None:intergenic | 60.0% | |
| GGGCGCGTGAGAAGCTCATA+TGG | - | chr1.4:18172536-18172555 | MS.gene82994:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 18170836 | 18172975 | 18170836 | ID=MS.gene82994 |
| chr1.4 | mRNA | 18170836 | 18172975 | 18170836 | ID=MS.gene82994.t1;Parent=MS.gene82994 |
| chr1.4 | exon | 18172844 | 18172975 | 18172844 | ID=MS.gene82994.t1.exon1;Parent=MS.gene82994.t1 |
| chr1.4 | CDS | 18172844 | 18172975 | 18172844 | ID=cds.MS.gene82994.t1;Parent=MS.gene82994.t1 |
| chr1.4 | exon | 18172691 | 18172739 | 18172691 | ID=MS.gene82994.t1.exon2;Parent=MS.gene82994.t1 |
| chr1.4 | CDS | 18172691 | 18172739 | 18172691 | ID=cds.MS.gene82994.t1;Parent=MS.gene82994.t1 |
| chr1.4 | exon | 18171461 | 18171660 | 18171461 | ID=MS.gene82994.t1.exon3;Parent=MS.gene82994.t1 |
| chr1.4 | CDS | 18171461 | 18171660 | 18171461 | ID=cds.MS.gene82994.t1;Parent=MS.gene82994.t1 |
| chr1.4 | exon | 18170836 | 18171090 | 18170836 | ID=MS.gene82994.t1.exon4;Parent=MS.gene82994.t1 |
| chr1.4 | CDS | 18170836 | 18171090 | 18170836 | ID=cds.MS.gene82994.t1;Parent=MS.gene82994.t1 |
| Gene Sequence |
| Protein sequence |
