AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83191

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83191.t1 MTR_6g015815 93.534 464 27 2 1 462 1 463 0.0 882
MS.gene83191.t1 MTR_6g015850 77.922 462 100 2 1 462 1 460 0.0 743
MS.gene83191.t1 MTR_6g015830 74.839 465 112 4 1 462 1 463 0.0 709
MS.gene83191.t1 MTR_6g015315 58.275 429 171 7 39 462 30 455 1.07e-173 495
MS.gene83191.t1 MTR_6g015320 55.773 459 187 8 10 462 9 457 4.33e-171 489
MS.gene83191.t1 MTR_7g014330 46.237 465 232 9 8 461 1 458 7.66e-143 417
MS.gene83191.t1 MTR_7g014250 46.253 467 229 10 8 461 1 458 4.22e-142 415
MS.gene83191.t1 MTR_7g014230 47.186 462 226 9 7 457 2 456 6.32e-142 414
MS.gene83191.t1 MTR_7g014200 43.709 453 227 10 26 457 21 466 6.92e-111 335
MS.gene83191.t1 MTR_7g014160 42.251 471 227 15 21 457 12 471 1.95e-108 329
MS.gene83191.t1 MTR_6g015310 50.141 355 129 8 85 437 25 333 6.38e-106 318
MS.gene83191.t1 MTR_7g014610 40.393 458 248 9 23 457 18 473 7.12e-99 305
MS.gene83191.t1 MTR_7g014360 43.077 390 190 10 81 461 22 388 1.40e-96 296
MS.gene83191.t1 MTR_7g013850 40.708 452 231 12 36 455 30 476 9.95e-96 297
MS.gene83191.t1 MTR_7g014620 38.688 442 246 7 25 457 5 430 8.42e-86 270
MS.gene83191.t1 MTR_2g089765 35.062 482 271 15 10 462 17 485 3.73e-83 265
MS.gene83191.t1 MTR_2g089670 35.504 476 280 9 3 462 16 480 8.65e-82 261
MS.gene83191.t1 MTR_8g012750 34.647 482 276 11 10 462 4 475 8.12e-77 248
MS.gene83191.t1 MTR_3g028210 33.689 469 275 11 8 455 7 460 4.82e-72 235
MS.gene83191.t1 MTR_3g087640 34.172 477 253 13 23 460 19 473 1.30e-69 229
MS.gene83191.t1 MTR_2g089735 34.157 445 244 14 48 462 39 464 1.51e-69 228
MS.gene83191.t1 MTR_2g089650 32.383 491 278 14 1 462 1 466 8.30e-69 227
MS.gene83191.t1 MTR_7g015860 32.917 480 274 12 10 462 6 464 6.26e-68 224
MS.gene83191.t1 MTR_2g089755 32.903 465 252 14 35 462 37 478 2.50e-65 218
MS.gene83191.t1 MTR_7g014310 37.730 326 149 8 118 440 30 304 1.46e-58 195
MS.gene83191.t1 MTR_7g014630 40.702 285 149 9 10 282 10 286 4.31e-53 182
MS.gene83191.t1 MTR_2g089665 29.911 448 194 13 10 444 3 343 1.55e-45 162
MS.gene83191.t1 MTR_7g014180 54.194 155 67 2 26 176 19 173 4.10e-45 155
MS.gene83191.t1 MTR_3g435300 40.580 207 102 4 26 219 15 213 2.86e-38 140
MS.gene83191.t1 MTR_7g014670 39.891 183 106 2 279 457 75 257 7.69e-37 136
MS.gene83191.t1 MTR_8g075610 26.506 415 266 17 51 454 30 416 3.45e-26 110
MS.gene83191.t1 MTR_7g014205 43.511 131 60 3 299 427 2 120 4.30e-25 100
MS.gene83191.t1 MTR_7g014210 45.299 117 60 3 316 429 23 138 7.83e-24 98.2
MS.gene83191.t1 MTR_2g064495 25.420 417 273 14 51 455 39 429 1.85e-23 102
MS.gene83191.t1 MTR_4g007540 25.666 413 270 13 51 451 39 426 4.96e-23 101
MS.gene83191.t1 MTR_2g105330 25.180 417 274 14 51 455 39 429 6.77e-23 100
MS.gene83191.t1 MTR_7g014340 56.757 74 30 1 8 81 1 72 4.39e-22 90.9
MS.gene83191.t1 MTR_3g101930 25.523 478 285 16 7 451 5 444 2.01e-21 97.1
MS.gene83191.t1 MTR_8g041770 23.904 456 302 14 12 451 4 430 1.43e-20 94.4
MS.gene83191.t1 MTR_4g094842 24.336 452 290 16 23 451 15 437 1.52e-20 94.4
MS.gene83191.t1 MTR_3g101900 25.000 464 296 14 8 451 6 437 7.86e-20 92.0
MS.gene83191.t1 MTR_4g094835 24.943 441 270 16 35 451 32 435 2.45e-19 90.5
MS.gene83191.t1 MTR_6g045553 26.154 455 267 18 35 448 35 461 1.20e-18 88.6
MS.gene83191.t1 MTR_7g084940 28.040 403 241 17 71 455 69 440 6.96e-18 86.3
MS.gene83191.t1 MTR_4g094828 24.198 405 258 14 31 414 25 401 5.72e-17 83.2
MS.gene83191.t1 MTR_7g014220 60.000 65 21 1 29 93 12 71 8.45e-17 75.5
MS.gene83191.t1 MTR_4g022800 24.027 437 277 16 43 451 22 431 3.07e-16 81.3
MS.gene83191.t1 MTR_3g026310 23.624 436 271 15 24 427 9 414 4.61e-16 80.5
MS.gene83191.t1 MTR_4g022720 25.115 434 261 18 47 451 26 424 7.96e-16 79.7
MS.gene83191.t1 MTR_7g085990 24.537 432 270 15 66 462 50 460 2.64e-15 78.2
MS.gene83191.t1 MTR_3g070170 24.413 426 263 16 59 448 54 456 6.10e-15 77.4
MS.gene83191.t1 MTR_4g127650 22.658 459 292 17 33 459 29 456 7.10e-15 77.0
MS.gene83191.t1 MTR_4g094832 24.412 340 200 11 133 451 116 419 8.75e-14 73.6
MS.gene83191.t1 MTR_2g089745 43.836 73 41 0 390 462 8 80 5.47e-13 64.7
MS.gene83191.t1 MTR_7g086000 23.434 431 255 15 74 462 63 460 1.38e-12 69.7
MS.gene83191.t1 MTR_3g435290 30.894 123 82 2 340 462 1 120 1.72e-12 64.7
MS.gene83191.t1 MTR_3g049150 22.986 422 263 13 67 455 51 443 1.94e-12 69.3
MS.gene83191.t1 MTR_4g022670 23.415 410 240 15 43 414 22 395 2.05e-12 69.3
MS.gene83191.t1 MTR_7g084910 25.965 285 181 9 56 331 55 318 3.68e-12 68.6
MS.gene83191.t1 MTR_4g015180 29.834 181 116 8 276 448 296 473 5.97e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83191.t1 AT5G39090 38.307 449 232 12 27 455 20 443 2.35e-90 282
MS.gene83191.t1 AT3G29635 37.797 463 255 12 10 455 4 450 8.37e-89 278
MS.gene83191.t1 AT5G39080 35.608 469 268 14 11 459 7 461 4.11e-86 271
MS.gene83191.t1 AT3G29670 35.920 451 273 9 11 455 5 445 4.47e-84 266
MS.gene83191.t1 AT3G29680 36.875 480 251 14 1 460 1 448 4.10e-80 256
MS.gene83191.t1 AT5G61160 33.043 460 285 9 10 459 4 450 5.80e-80 255
MS.gene83191.t1 AT5G39050 37.421 473 263 15 3 455 4 463 1.01e-77 250
MS.gene83191.t1 AT3G29590 33.763 465 266 14 7 455 6 444 2.02e-72 236
MS.gene83191.t1 AT1G03940 32.272 471 283 14 10 459 9 464 1.24e-67 224
MS.gene83191.t1 AT1G03495 33.143 350 201 14 1 333 1 334 4.07e-43 155
MS.gene83191.t1 AT5G23940 25.591 465 272 22 22 449 12 439 1.24e-22 100
MS.gene83191.t1 AT5G48930 25.882 425 277 16 39 451 28 426 1.53e-22 100
MS.gene83191.t1 AT3G29720 34.328 201 119 7 92 289 11 201 1.86e-20 90.1
MS.gene83191.t1 AT5G42830 24.941 425 241 15 65 453 58 440 1.11e-18 88.6
MS.gene83191.t1 AT5G67150 25.926 432 284 12 35 453 29 437 3.84e-18 87.0
MS.gene83191.t1 AT5G07850 26.226 469 288 20 10 453 9 444 4.08e-18 87.0
MS.gene83191.t1 AT2G39980 23.516 455 304 15 33 453 27 471 1.84e-17 85.1
MS.gene83191.t1 AT3G29690 31.373 153 99 2 310 461 33 180 2.47e-17 80.1
MS.gene83191.t1 AT3G29636 28.696 230 93 6 247 462 23 195 1.56e-16 78.6
MS.gene83191.t1 AT3G50270 25.791 411 256 15 22 411 15 397 3.06e-15 78.2
MS.gene83191.t1 AT1G31490 25.943 424 243 16 32 430 26 403 3.88e-15 77.8
MS.gene83191.t1 AT3G48720 24.079 353 227 11 71 411 61 384 1.40e-14 75.9
MS.gene83191.t1 AT5G57840 23.026 456 290 18 28 457 16 436 1.46e-14 75.9
MS.gene83191.t1 AT5G41040 23.058 412 252 13 71 457 69 440 1.34e-13 73.2
MS.gene83191.t1 AT5G41040 23.058 412 252 13 71 457 85 456 2.01e-13 72.4
MS.gene83191.t1 AT3G50280 26.523 279 166 8 148 414 14 265 2.64e-12 68.2
MS.gene83191.t1 AT3G50280 26.523 279 166 8 148 414 144 395 3.61e-12 68.6
MS.gene83191.t1 AT5G67160 22.565 421 273 14 4 411 2 382 1.04e-11 67.0

Find 62 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATTTCTCCTATGTATTT+TGG 0.099812 6.3:-10579417 MS.gene83191:CDS
CAAGAAGTTGACTCCATTTA+AGG 0.114161 6.3:-10579015 None:intergenic
TTTGGACTCAACAACATTAA+AGG 0.192871 6.3:+10580058 None:intergenic
GTTGATGCTTTGATGAATTT+TGG 0.216352 6.3:-10579708 MS.gene83191:CDS
CTCTGGCTGGTAACATAATT+TGG 0.220623 6.3:-10580133 MS.gene83191:CDS
CTAAAGTTTGAAACCTTAAA+TGG 0.222801 6.3:+10579002 None:intergenic
AAGATCATTGAAACTTTCTT+TGG 0.225581 6.3:+10580040 None:intergenic
GTTGAGATTGGTTTGGCTTT+AGG 0.242267 6.3:-10579075 MS.gene83191:CDS
TGGTTAGCTACTATGTTTAA+TGG 0.256858 6.3:-10579255 MS.gene83191:CDS
GAAGTCATATCAACTTTCTT+AGG 0.271346 6.3:+10579153 None:intergenic
TACTATGTTTAATGGTAAAA+AGG 0.281901 6.3:-10579247 MS.gene83191:CDS
AGTCAACTTCTTGAACAAAA+AGG 0.284489 6.3:+10579025 None:intergenic
GAAAGTGAATGCTTAAGATT+TGG 0.305625 6.3:+10580179 None:intergenic
GTTAAAATTTCCTCTATTGC+TGG 0.309053 6.3:-10579222 MS.gene83191:CDS
ATTGCAAACTTCAACAACTT+TGG 0.345314 6.3:+10580358 None:intergenic
CCCTTAACATAGTTTATGAT+TGG 0.347757 6.3:+10580092 None:intergenic
GAGGTTTATAGTATTGATTT+TGG 0.348010 6.3:-10579186 MS.gene83191:CDS
TAATAAAAGTCTCAAGGTTT+GGG 0.355038 6.3:-10579676 MS.gene83191:CDS
ACCAATCATAAACTATGTTA+AGG 0.355743 6.3:-10580093 MS.gene83191:CDS
TCACACCATGCTGGTTTAGA+TGG 0.356316 6.3:-10579885 MS.gene83191:CDS
AAGAAATTAGTTGGAAAAGA+TGG 0.370504 6.3:-10579357 MS.gene83191:CDS
ATAATAAAAGTCTCAAGGTT+TGG 0.375427 6.3:-10579677 MS.gene83191:CDS
ATTGGTTTAGATGAATCATT+TGG 0.386033 6.3:+10580110 None:intergenic
CTTGATACAAAGAAATTAGT+TGG 0.386537 6.3:-10579366 MS.gene83191:CDS
GGATGAATGAAGCTTTGAAT+AGG 0.393461 6.3:-10579314 MS.gene83191:CDS
AACAATGGTGGAGTTGAGAT+TGG 0.405228 6.3:-10579087 MS.gene83191:CDS
CCAATCATAAACTATGTTAA+GGG 0.424688 6.3:-10580092 MS.gene83191:CDS
CCTTGGTGATCCAGCAATAG+AGG 0.425782 6.3:+10579212 None:intergenic
GGCTTTAGGTAAGGAAGAAA+TGG 0.426128 6.3:-10579061 MS.gene83191:CDS
GATGAATGAAGCTTTGAATA+GGG 0.427868 6.3:-10579313 MS.gene83191:CDS
TGCTGGATCACCAAGGTTTG+AGG 0.430883 6.3:-10579205 MS.gene83191:CDS
ATGACTTCAACTGATAAAAC+AGG 0.450314 6.3:-10579138 MS.gene83191:CDS
TGTTGAATGGAGCTAAAGAT+TGG 0.451673 6.3:-10579275 MS.gene83191:CDS
TAGAAGAAAAGACGTTCAAC+TGG 0.473498 6.3:+10580245 None:intergenic
AAAGTGAGGGGAAGTGAGGT+TGG 0.480955 6.3:+10580296 None:intergenic
AAATTGTGTTACAGGACAAA+AGG 0.481421 6.3:-10579394 MS.gene83191:CDS
ATACTATAAACCTCAAACCT+TGG 0.484183 6.3:+10579195 None:intergenic
ACTTCAATACTTTCTCCCTC+TGG 0.485909 6.3:-10580150 MS.gene83191:CDS
AGACCATGATTTCATAAAAG+TGG 0.503140 6.3:+10579851 None:intergenic
GATTGGTTTGGCTTTAGGTA+AGG 0.510243 6.3:-10579070 MS.gene83191:CDS
CAATACTTTCTCCCTCTGGC+TGG 0.512047 6.3:-10580146 MS.gene83191:CDS
TGATTCTTCTTGTTGTGCCA+TGG 0.517270 6.3:+10580385 None:intergenic
ATTACTTTGTTTCCAAACAA+TGG 0.525628 6.3:-10579927 MS.gene83191:CDS
TAAAAGATCAAAGAAAGTGA+GGG 0.529702 6.3:+10580283 None:intergenic
TGGTGGAGTTGAGATTGGTT+TGG 0.532650 6.3:-10579082 MS.gene83191:CDS
AAAGAAAGTGAGGGGAAGTG+AGG 0.541545 6.3:+10580292 None:intergenic
GGAATATCATCACACCATGC+TGG 0.550715 6.3:-10579894 MS.gene83191:CDS
AAGAAAAGACGTTCAACTGG+TGG 0.567805 6.3:+10580248 None:intergenic
ACCAAATAATAAAAGTCTCA+AGG 0.572931 6.3:-10579682 MS.gene83191:CDS
ACACAATTTCCAAAATACAT+AGG 0.574370 6.3:+10579408 None:intergenic
ATAAAAGATCAAAGAAAGTG+AGG 0.583211 6.3:+10580282 None:intergenic
AGCAAAAGCTGAGCAACCAA+AGG 0.591511 6.3:-10579493 MS.gene83191:CDS
CCATGATTTCATAAAAGTGG+TGG 0.597299 6.3:+10579854 None:intergenic
AAATACATAGGAGAAATTGA+AGG 0.601552 6.3:+10579420 None:intergenic
GAAAGGAGGAATAACAATGG+TGG 0.607177 6.3:-10579099 MS.gene83191:CDS
AAATTATGTTACCAGCCAGA+GGG 0.650168 6.3:+10580135 None:intergenic
CCTCTATTGCTGGATCACCA+AGG 0.655723 6.3:-10579212 MS.gene83191:CDS
CAAATTATGTTACCAGCCAG+AGG 0.656482 6.3:+10580134 None:intergenic
AAAAGATCAAAGAAAGTGAG+GGG 0.657010 6.3:+10580284 None:intergenic
TTGATAGAAGATCATCATGG+TGG 0.686075 6.3:-10579747 MS.gene83191:CDS
AGTGAAAGGAGGAATAACAA+TGG 0.694709 6.3:-10579102 MS.gene83191:CDS
TCATTGATAGAAGATCATCA+TGG 0.705951 6.3:-10579750 MS.gene83191:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATAAAAAAGATGAATCA+AGG + chr6.3:10579598-10579617 None:intergenic 20.0%
!! ATCAATGATCTATCAAAAAA+AGG + chr6.3:10579638-10579657 None:intergenic 20.0%
!! TACTATGTTTAATGGTAAAA+AGG - chr6.3:10580153-10580172 MS.gene83191:CDS 20.0%
!!! TATAGTATTGATTTTGGATT+TGG - chr6.3:10580220-10580239 MS.gene83191:CDS 20.0%
!!! TTAAGCTTTTGAATATTTGA+AGG + chr6.3:10579803-10579822 None:intergenic 20.0%
! AAATACATAGGAGAAATTGA+AGG + chr6.3:10579983-10580002 None:intergenic 25.0%
! AAGAAATTAGTTGGAAAAGA+TGG - chr6.3:10580043-10580062 MS.gene83191:CDS 25.0%
! AAGAGTTTCATAGAAAAAAG+AGG + chr6.3:10579198-10579217 None:intergenic 25.0%
! AAGATCATTGAAACTTTCTT+TGG + chr6.3:10579363-10579382 None:intergenic 25.0%
! ACACAATTTCCAAAATACAT+AGG + chr6.3:10579995-10580014 None:intergenic 25.0%
! ACCAAATAATAAAAGTCTCA+AGG - chr6.3:10579718-10579737 MS.gene83191:CDS 25.0%
! ACCAATCATAAACTATGTTA+AGG - chr6.3:10579307-10579326 MS.gene83191:CDS 25.0%
! AGAGTTTCATAGAAAAAAGA+GGG + chr6.3:10579197-10579216 None:intergenic 25.0%
! ATAAAAGATCAAAGAAAGTG+AGG + chr6.3:10579121-10579140 None:intergenic 25.0%
! ATAATAAAAGTCTCAAGGTT+TGG - chr6.3:10579723-10579742 MS.gene83191:CDS 25.0%
! CCAATCATAAACTATGTTAA+GGG - chr6.3:10579308-10579327 MS.gene83191:CDS 25.0%
! CTTGATACAAAGAAATTAGT+TGG - chr6.3:10580034-10580053 MS.gene83191:CDS 25.0%
! TAAAAGATCAAAGAAAGTGA+GGG + chr6.3:10579120-10579139 None:intergenic 25.0%
! TAATAAAAGTCTCAAGGTTT+GGG - chr6.3:10579724-10579743 MS.gene83191:CDS 25.0%
!! ACCTTGAGACTTTTATTATT+TGG + chr6.3:10579722-10579741 None:intergenic 25.0%
!! AGTGTTTTTCATATTTAGTG+TGG - chr6.3:10579937-10579956 MS.gene83191:CDS 25.0%
!! ATTACTTTGTTTCCAAACAA+TGG - chr6.3:10579473-10579492 MS.gene83191:CDS 25.0%
!! ATTGGTTTAGATGAATCATT+TGG + chr6.3:10579293-10579312 None:intergenic 25.0%
!! TCAATTTCTCCTATGTATTT+TGG - chr6.3:10579983-10580002 MS.gene83191:CDS 25.0%
!! TCACTTTCTTTGATCTTTTA+TGG - chr6.3:10579120-10579139 MS.gene83191:CDS 25.0%
!!! ATCTATCAAAAAAAGGTGTT+AGG + chr6.3:10579631-10579650 None:intergenic 25.0%
!!! GAGGTTTATAGTATTGATTT+TGG - chr6.3:10580214-10580233 MS.gene83191:CDS 25.0%
!!! GATTTTTAAGTGCTTTAGAA+GGG - chr6.3:10580065-10580084 MS.gene83191:CDS 25.0%
!!! TATTTTGGAAATTGTGTTAC+AGG - chr6.3:10579998-10580017 MS.gene83191:CDS 25.0%
!!! TTTAATTGCATCGTTTTTTG+CGG + chr6.3:10579762-10579781 None:intergenic 25.0%
AAAAACACTTCTTCAACCTT+TGG + chr6.3:10579926-10579945 None:intergenic 30.0%
AAAAGATCAAAGAAAGTGAG+GGG + chr6.3:10579119-10579138 None:intergenic 30.0%
AAATTGTGTTACAGGACAAA+AGG - chr6.3:10580006-10580025 MS.gene83191:CDS 30.0%
AGACCATGATTTCATAAAAG+TGG + chr6.3:10579552-10579571 None:intergenic 30.0%
AGTCAACTTCTTGAACAAAA+AGG + chr6.3:10580378-10580397 None:intergenic 30.0%
ATACTATAAACCTCAAACCT+TGG + chr6.3:10580208-10580227 None:intergenic 30.0%
ATGACTTCAACTGATAAAAC+AGG - chr6.3:10580262-10580281 MS.gene83191:CDS 30.0%
ATTGCAAACTTCAACAACTT+TGG + chr6.3:10579045-10579064 None:intergenic 30.0%
CCCTTAACATAGTTTATGAT+TGG + chr6.3:10579311-10579330 None:intergenic 30.0%
GAAAGTGAATGCTTAAGATT+TGG + chr6.3:10579224-10579243 None:intergenic 30.0%
GAAGTCATATCAACTTTCTT+AGG + chr6.3:10580250-10580269 None:intergenic 30.0%
GTCAACTTCTTGAACAAAAA+GGG + chr6.3:10580377-10580396 None:intergenic 30.0%
GTTAAAATTTCCTCTATTGC+TGG - chr6.3:10580178-10580197 MS.gene83191:CDS 30.0%
TCATTGATAGAAGATCATCA+TGG - chr6.3:10579650-10579669 MS.gene83191:CDS 30.0%
TTGAATAGGGTGAAAAATGA+TGG - chr6.3:10580100-10580119 MS.gene83191:CDS 30.0%
TTTGGACTCAACAACATTAA+AGG + chr6.3:10579345-10579364 None:intergenic 30.0%
! GTTGATGCTTTGATGAATTT+TGG - chr6.3:10579692-10579711 MS.gene83191:CDS 30.0%
! TCATGTGAAGTTTTCAAAAG+TGG + chr6.3:10579428-10579447 None:intergenic 30.0%
! TGGTTAGCTACTATGTTTAA+TGG - chr6.3:10580145-10580164 MS.gene83191:CDS 30.0%
!! AAAAATGATGGAGTGTTGAA+TGG - chr6.3:10580112-10580131 MS.gene83191:CDS 30.0%
!! GATGAATGAAGCTTTGAATA+GGG - chr6.3:10580087-10580106 MS.gene83191:CDS 30.0%
!!! AAAAAAGGTGTTAGGTTTTC+AGG + chr6.3:10579623-10579642 None:intergenic 30.0%
!!! GGATTTTTAAGTGCTTTAGA+AGG - chr6.3:10580064-10580083 MS.gene83191:CDS 30.0%
!!! GTTTTTGTTGGTTCATGAAA+TGG + chr6.3:10579074-10579093 None:intergenic 30.0%
AAATTATGTTACCAGCCAGA+GGG + chr6.3:10579268-10579287 None:intergenic 35.0%
AGTGAAAGGAGGAATAACAA+TGG - chr6.3:10580298-10580317 MS.gene83191:CDS 35.0%
CCAATGCAAAAACCATTGTT+TGG + chr6.3:10579488-10579507 None:intergenic 35.0%
CCATGATTTCATAAAAGTGG+TGG + chr6.3:10579549-10579568 None:intergenic 35.0%
TAGAAGAAAAGACGTTCAAC+TGG + chr6.3:10579158-10579177 None:intergenic 35.0%
TGTTGAATGGAGCTAAAGAT+TGG - chr6.3:10580125-10580144 MS.gene83191:CDS 35.0%
TTGATAGAAGATCATCATGG+TGG - chr6.3:10579653-10579672 MS.gene83191:CDS 35.0%
! ATTTTCCATCTAAACCAGCA+TGG + chr6.3:10579523-10579542 None:intergenic 35.0%
! CATTTTCTCTAAGTGAAAGG+AGG - chr6.3:10580287-10580306 MS.gene83191:CDS 35.0%
! CCAAACAATGGTTTTTGCAT+TGG - chr6.3:10579485-10579504 MS.gene83191:CDS 35.0%
! GAGCATTTTCTCTAAGTGAA+AGG - chr6.3:10580284-10580303 MS.gene83191:CDS 35.0%
! GATGCTTTGATGAATTTTGG+TGG - chr6.3:10579695-10579714 MS.gene83191:CDS 35.0%
! GGTGATTGAGAAGTTTTTGT+TGG + chr6.3:10579086-10579105 None:intergenic 35.0%
!! CCACCACTTTTATGAAATCA+TGG - chr6.3:10579546-10579565 MS.gene83191:CDS 35.0%
!! GGATGAATGAAGCTTTGAAT+AGG - chr6.3:10580086-10580105 MS.gene83191:CDS 35.0%
!!! CTCAAGGTTTGGGATTTTTT+CGG - chr6.3:10579734-10579753 MS.gene83191:CDS 35.0%
AAGAAAAGACGTTCAACTGG+TGG + chr6.3:10579155-10579174 None:intergenic 40.0%
ACTTCAATACTTTCTCCCTC+TGG - chr6.3:10579250-10579269 MS.gene83191:CDS 40.0%
CAAATTATGTTACCAGCCAG+AGG + chr6.3:10579269-10579288 None:intergenic 40.0%
CTCTGGCTGGTAACATAATT+TGG - chr6.3:10579267-10579286 MS.gene83191:CDS 40.0%
GAAAGGAGGAATAACAATGG+TGG - chr6.3:10580301-10580320 MS.gene83191:CDS 40.0%
! AACAATGGTGGAGTTGAGAT+TGG - chr6.3:10580313-10580332 MS.gene83191:CDS 40.0%
!! GATTGGTTTGGCTTTAGGTA+AGG - chr6.3:10580330-10580349 MS.gene83191:CDS 40.0%
!! GGCTTTAGGTAAGGAAGAAA+TGG - chr6.3:10580339-10580358 MS.gene83191:CDS 40.0%
!! GTTGAGATTGGTTTGGCTTT+AGG - chr6.3:10580325-10580344 MS.gene83191:CDS 40.0%
AAAGAAAGTGAGGGGAAGTG+AGG + chr6.3:10579111-10579130 None:intergenic 45.0%
AGCAAAAGCTGAGCAACCAA+AGG - chr6.3:10579907-10579926 MS.gene83191:CDS 45.0%
GGAATATCATCACACCATGC+TGG - chr6.3:10579506-10579525 MS.gene83191:CDS 45.0%
! TGGTGGAGTTGAGATTGGTT+TGG - chr6.3:10580318-10580337 MS.gene83191:CDS 45.0%
!! TCACACCATGCTGGTTTAGA+TGG - chr6.3:10579515-10579534 MS.gene83191:CDS 45.0%
AAAGTGAGGGGAAGTGAGGT+TGG + chr6.3:10579107-10579126 None:intergenic 50.0%
CAATACTTTCTCCCTCTGGC+TGG - chr6.3:10579254-10579273 MS.gene83191:CDS 50.0%
CCTCTATTGCTGGATCACCA+AGG - chr6.3:10580188-10580207 MS.gene83191:CDS 50.0%
TGCTGGATCACCAAGGTTTG+AGG - chr6.3:10580195-10580214 MS.gene83191:CDS 50.0%
! CCTTGGTGATCCAGCAATAG+AGG + chr6.3:10580191-10580210 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 10579017 10580405 10579017 ID=MS.gene83191
chr6.3 mRNA 10579017 10580405 10579017 ID=MS.gene83191.t1;Parent=MS.gene83191
chr6.3 exon 10579017 10580405 10579017 ID=MS.gene83191.t1.exon1;Parent=MS.gene83191.t1
chr6.3 CDS 10579017 10580405 10579017 ID=cds.MS.gene83191.t1;Parent=MS.gene83191.t1
Gene Sequence

>MS.gene83191

ATGGCACAACAAGAAGAATCAATATCCAAAGTTGTTGAAGTTTGCAATATTGAACCATTTCATGAACCAACAAAAACTTCTCAATCACCAACCTCACTTCCCCTCACTTTCTTTGATCTTTTATGGTTAAGATTTCCACCAGTTGAACGTCTTTTCTTCTATGAATTCACAAACTCACCCTCTTTTTTCTATGAAACTCTTCTTCCAAATCTTAAGCATTCACTTTCACTCACACTTCAATACTTTCTCCCTCTGGCTGGTAACATAATTTGGCCAAATGATTCATCTAAACCAATCATAAACTATGTTAAGGGAGATTTTGTTTCCTTTAATGTTGTTGAGTCCAAAGAAAGTTTCAATGATCTTTCTTCTAATCAATGTGAAGCTTCAAAAAGACATCATTTGATACCACTTTTGAAAACTTCACATGAAAAAGCTTCTTTGATTTCAATACAAATTACTTTGTTTCCAAACAATGGTTTTTGCATTGGAATATCATCACACCATGCTGGTTTAGATGGAAAATCTTCCACCACTTTTATGAAATCATGGTCTTATATTGCATCTTCTAACTCTAACCTTGATTCATCTTTTTTATCTTTACCTGAAAACCTAACACCTTTTTTTGATAGATCATTGATAGAAGATCATCATGGTGGAATTAGTGAAGCATATGTTGATGCTTTGATGAATTTTGGTGGACCAAATAATAAAAGTCTCAAGGTTTGGGATTTTTTCGGTGCCGCAAAAAACGATGCAATTAAAAGCTTATTTGAATTGACACCTTCAAATATTCAAAAGCTTAAAGATTATGCAAAAAATGAGATGAAAATGAATGTTACAAACTTGTCAACTTTTTCAGTTACATGTGCTTATGTGTTAGCATGTTTAGCAAAAGCTGAGCAACCAAAGGTTGAAGAAGTGTTTTTCATATTTAGTGTGGATTCTAGAGCAAGATTAGAGCCTTCAATTTCTCCTATGTATTTTGGAAATTGTGTTACAGGACAAAAGGTTGTGCTTGATACAAAGAAATTAGTTGGAAAAGATGGATTTTTAAGTGCTTTAGAAGGGATGAATGAAGCTTTGAATAGGGTGAAAAATGATGGAGTGTTGAATGGAGCTAAAGATTGGTTAGCTACTATGTTTAATGGTAAAAAGGATGTTAAAATTTCCTCTATTGCTGGATCACCAAGGTTTGAGGTTTATAGTATTGATTTTGGATTTGGAAAGCCTAAGAAAGTTGATATGACTTCAACTGATAAAACAGGAGCATTTTCTCTAAGTGAAAGGAGGAATAACAATGGTGGAGTTGAGATTGGTTTGGCTTTAGGTAAGGAAGAAATGGAAGCTTTTTCTACCCTTTTTGTTCAAGAAGTTGACTCCATTTAA
Protein sequence

>MS.gene83191.t1

MAQQEESISKVVEVCNIEPFHEPTKTSQSPTSLPLTFFDLLWLRFPPVERLFFYEFTNSPSFFYETLLPNLKHSLSLTLQYFLPLAGNIIWPNDSSKPIINYVKGDFVSFNVVESKESFNDLSSNQCEASKRHHLIPLLKTSHEKASLISIQITLFPNNGFCIGISSHHAGLDGKSSTTFMKSWSYIASSNSNLDSSFLSLPENLTPFFDRSLIEDHHGGISEAYVDALMNFGGPNNKSLKVWDFFGAAKNDAIKSLFELTPSNIQKLKDYAKNEMKMNVTNLSTFSVTCAYVLACLAKAEQPKVEEVFFIFSVDSRARLEPSISPMYFGNCVTGQKVVLDTKKLVGKDGFLSALEGMNEALNRVKNDGVLNGAKDWLATMFNGKKDVKISSIAGSPRFEVYSIDFGFGKPKKVDMTSTDKTGAFSLSERRNNNGGVEIGLALGKEEMEAFSTLFVQEVDSI