AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83193

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83193.t1 MTR_6g015795 88.770 374 37 2 1 370 1 373 0.0 679
MS.gene83193.t1 MTR_6g015805 86.364 374 40 5 1 370 1 367 0.0 646
MS.gene83193.t1 MTR_7g015670 40.845 355 187 15 26 365 31 377 2.18e-67 229
MS.gene83193.t1 MTR_5g047110 37.831 378 216 12 1 369 2 369 3.46e-66 225
MS.gene83193.t1 MTR_7g015250 38.987 395 208 16 26 397 29 413 1.20e-65 224
MS.gene83193.t1 MTR_7g015390 40.336 357 179 16 26 360 29 373 2.88e-65 223
MS.gene83193.t1 MTR_7g015310 39.259 405 210 16 12 393 13 404 5.69e-65 223
MS.gene83193.t1 MTR_4g052290 38.889 378 204 13 7 365 5 374 8.15e-65 222
MS.gene83193.t1 MTR_4g111925 38.398 362 190 12 14 362 19 360 2.92e-63 215
MS.gene83193.t1 MTR_7g073660 38.398 362 190 12 14 362 19 360 1.53e-62 216
MS.gene83193.t1 MTR_7g015240 40.616 357 184 14 26 365 29 374 8.49e-62 213
MS.gene83193.t1 MTR_5g047060 37.088 364 206 11 1 352 2 354 3.03e-61 212
MS.gene83193.t1 MTR_7g015510 39.167 360 177 15 26 360 31 373 1.33e-60 211
MS.gene83193.t1 MTR_7g015550 40.000 355 181 15 26 360 31 373 3.54e-60 209
MS.gene83193.t1 MTR_7g015280 38.889 360 188 16 26 370 29 371 6.16e-60 208
MS.gene83193.t1 MTR_7g015420 39.143 350 187 14 26 360 29 367 6.98e-58 204
MS.gene83193.t1 MTR_7g015320 38.122 362 197 14 26 365 29 385 1.68e-57 202
MS.gene83193.t1 MTR_7g015620 39.093 353 191 15 24 360 23 367 9.11e-57 197
MS.gene83193.t1 MTR_7g015230 38.177 351 195 13 31 365 37 381 2.31e-55 196
MS.gene83193.t1 MTR_1g080740 32.425 367 217 15 8 365 5 349 1.63e-40 153
MS.gene83193.t1 MTR_5g047120 31.988 347 193 13 35 357 41 368 1.22e-38 148
MS.gene83193.t1 MTR_7g115300 33.795 361 204 16 14 360 15 354 5.94e-38 146
MS.gene83193.t1 MTR_2g030310 28.824 340 203 13 35 357 32 349 5.31e-30 122
MS.gene83193.t1 MTR_2g030310 28.824 340 203 13 35 357 32 349 6.31e-30 122
MS.gene83193.t1 MTR_6g048090 29.799 349 198 14 26 356 22 341 6.15e-26 110
MS.gene83193.t1 MTR_7g078220 29.330 358 211 18 11 356 9 336 2.52e-25 107
MS.gene83193.t1 MTR_2g080220 29.885 348 199 14 27 362 27 341 2.72e-25 108
MS.gene83193.t1 MTR_2g096160 29.217 332 197 16 10 329 10 315 2.37e-24 105
MS.gene83193.t1 MTR_4g061833 28.986 345 209 17 27 362 28 345 1.59e-23 103
MS.gene83193.t1 MTR_4g061930 28.986 345 209 17 27 362 28 345 1.59e-23 103
MS.gene83193.t1 MTR_8g467150 27.654 358 210 15 9 351 11 334 3.34e-22 99.4
MS.gene83193.t1 MTR_1g100110 27.515 338 214 16 26 356 37 350 3.65e-22 99.4
MS.gene83193.t1 MTR_4g109010 28.065 310 181 14 81 378 105 384 4.13e-21 96.3
MS.gene83193.t1 MTR_8g037700 30.564 337 201 17 27 356 59 369 2.42e-20 93.6
MS.gene83193.t1 MTR_4g095018 25.959 339 209 16 10 332 15 327 2.55e-17 84.3
MS.gene83193.t1 MTR_4g095042 26.062 353 204 16 5 332 3 323 4.00e-17 84.0
MS.gene83193.t1 MTR_5g047070 46.753 77 40 1 282 357 51 127 1.92e-14 75.5
MS.gene83193.t1 MTR_4g095032 24.773 331 217 15 12 329 7 318 5.19e-14 74.3
MS.gene83193.t1 MTR_4g061833 29.577 213 128 11 153 362 1 194 2.22e-13 72.4
MS.gene83193.t1 MTR_4g095022 24.695 328 215 15 14 329 13 320 1.67e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83193.t1 AT3G51550 41.504 359 183 15 18 365 21 363 8.82e-67 228
MS.gene83193.t1 AT5G39000 39.474 342 185 11 27 360 26 353 2.23e-61 213
MS.gene83193.t1 AT5G39020 37.752 347 193 12 26 365 22 352 3.47e-61 211
MS.gene83193.t1 AT5G38990 39.011 364 197 16 4 358 1 348 6.07e-56 197
MS.gene83193.t1 AT5G39030 36.088 363 210 11 11 365 5 353 2.26e-53 190
MS.gene83193.t1 AT5G39030 36.888 347 197 11 27 365 15 347 9.68e-53 188
MS.gene83193.t1 AT3G04690 33.528 343 202 15 35 369 31 355 2.82e-40 152
MS.gene83193.t1 AT5G28680 32.153 367 217 15 10 365 7 352 6.41e-39 149
MS.gene83193.t1 AT5G28680 32.153 367 217 15 10 365 7 352 6.41e-39 149
MS.gene83193.t1 AT1G30570 27.520 367 228 15 7 357 9 353 1.11e-31 127
MS.gene83193.t1 AT5G59700 28.161 348 200 14 26 362 24 332 5.83e-28 116
MS.gene83193.t1 AT4G00300 27.374 358 231 16 5 356 3 337 2.76e-27 113
MS.gene83193.t1 AT3G46290 29.254 335 187 14 7 329 6 302 1.46e-26 112
MS.gene83193.t1 AT5G61350 28.024 339 190 17 26 345 27 330 2.08e-25 108
MS.gene83193.t1 AT5G54380 28.375 363 232 13 8 365 5 344 6.84e-25 107
MS.gene83193.t1 AT5G24010 30.061 326 198 15 13 329 10 314 1.25e-22 100
MS.gene83193.t1 AT2G21480 28.012 332 208 16 26 350 50 357 2.74e-22 99.8
MS.gene83193.t1 AT2G23200 27.887 355 203 14 7 347 13 328 1.87e-20 94.0
MS.gene83193.t1 AT4G39110 27.003 337 205 18 26 350 51 358 7.90e-20 92.4
MS.gene83193.t1 AT2G39360 30.321 343 184 20 4 331 1 303 4.49e-19 89.7

Find 91 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGGAAATTCTAATAATTA+TGG 0.216412 6.3:-10566353 MS.gene83193:CDS
ACTTTGTTTATGGAAGATTT+TGG 0.221566 6.3:+10566659 None:intergenic
TGAATATGGAACTTTGTTTA+TGG 0.239856 6.3:+10566649 None:intergenic
AAATGGTTTCACACTTCTTA+AGG 0.289321 6.3:-10566489 MS.gene83193:CDS
GTATAAGAGGGTGATGATTA+TGG 0.300832 6.3:+10566847 None:intergenic
TTCTTCTCTTTAACCGGATC+TGG 0.322529 6.3:+10565104 None:intergenic
CTCGTACCTGTTATATCTGC+TGG 0.324909 6.3:+10565575 None:intergenic
CCACTATTCTTCTCTTTAAC+CGG 0.327199 6.3:+10565098 None:intergenic
TGGGAATTCCCCGTTGATTC+CGG 0.334209 6.3:-10565449 MS.gene83193:CDS
TCCTTTGGTGCTATGTAGTC+AGG 0.359188 6.3:+10565536 None:intergenic
GATAAACGAGCTGTTGAATA+TGG 0.371772 6.3:+10566635 None:intergenic
TTATTAGAATTTCCACTACT+TGG 0.372361 6.3:+10566359 None:intergenic
TGCTGTTGGTGTTCTTAAAT+AGG 0.372805 6.3:+10565610 None:intergenic
AACCTCAATTGTGGCACAAC+AGG 0.373259 6.3:-10566773 MS.gene83193:CDS
CCGGCTTCACTTACTTTGTC+AGG 0.373297 6.3:-10565430 MS.gene83193:CDS
ACATAGGCATGCTCAGAAAC+TGG 0.373502 6.3:-10565649 MS.gene83193:CDS
AATTATTTCTATTATTATAG+TGG 0.373655 6.3:+10565046 None:intergenic
CACATTTCCTTGTAGATAAA+CGG 0.392473 6.3:+10565352 None:intergenic
TCTTTAACCGGATCTGGATT+CGG 0.393915 6.3:+10565110 None:intergenic
CAACGGGGAATTCCCATGTT+AGG 0.394703 6.3:+10565456 None:intergenic
AAACCGTTGGTATAAGTAGT+AGG 0.406261 6.3:+10566545 None:intergenic
AAATGGACACAAAATCAAAA+AGG 0.416019 6.3:-10565305 MS.gene83193:intron
ATGCCTATGTCTTGAATGTT+TGG 0.416609 6.3:+10565662 None:intergenic
AAGTCGACCCGAACATAACT+AGG 0.416722 6.3:-10565394 MS.gene83193:CDS
GGGAGGTGGAAAAGTATAAG+AGG 0.417418 6.3:+10566834 None:intergenic
TTGAGGTTAAAACGGTCAAT+TGG 0.438656 6.3:+10566788 None:intergenic
CGTAGGCTTGAAGGTGTAAG+AGG 0.448967 6.3:+10566813 None:intergenic
GTTGGTTCGAAGAATCTTGC+TGG 0.452551 6.3:-10565134 MS.gene83193:CDS
TCGCCCGCCCTAGTTATGTT+CGG 0.457975 6.3:+10565386 None:intergenic
CAATTGGTTCGTAGGCTTGA+AGG 0.460075 6.3:+10566804 None:intergenic
TAAGTGAAGCCGGAATCAAC+GGG 0.460354 6.3:+10565440 None:intergenic
TCGGGTCGACTTCACAGAAA+TGG 0.462203 6.3:+10565405 None:intergenic
GGTGTATAGTATAGATCGTC+AGG 0.462687 6.3:+10566299 None:intergenic
TGTGAAACCATTTGAAATAA+CGG 0.472819 6.3:+10566499 None:intergenic
AAAGAATATGTTATTTACGT+TGG 0.477278 6.3:-10566413 MS.gene83193:CDS
TTCGTCCCAGCAGATATAAC+AGG 0.480575 6.3:-10565581 MS.gene83193:CDS
GATGATTTGAAGAGGTCCTT+TGG 0.480613 6.3:+10565521 None:intergenic
CGCCCGCCCTAGTTATGTTC+GGG 0.483405 6.3:+10565387 None:intergenic
TCATTAAACGCTGATGTTGA+AGG 0.490768 6.3:-10566455 MS.gene83193:CDS
CTACCGACGGACAACGAACA+TGG 0.492374 6.3:-10566745 MS.gene83193:CDS
TATACACCACTTGAGGATCC+TGG 0.494000 6.3:-10566284 MS.gene83193:CDS
TTTGGAACAGAAACTGTTGT+TGG 0.494650 6.3:+10566677 None:intergenic
GTAAGTGAAGCCGGAATCAA+CGG 0.498929 6.3:+10565439 None:intergenic
TGCTGGACCGAATCCAGATC+CGG 0.503554 6.3:-10565117 MS.gene83193:CDS
GTCTTCACCGTTTATCTACA+AGG 0.504270 6.3:-10565359 MS.gene83193:CDS
TTGGAACAGAAACTGTTGTT+GGG 0.504341 6.3:+10566678 None:intergenic
TGCCACAATTGAGGTTAAAA+CGG 0.504648 6.3:+10566780 None:intergenic
GCAGATTACAGAATCAAAGT+TGG 0.505870 6.3:-10565701 MS.gene83193:intron
TTCCTGTTGTGCCACAATTG+AGG 0.506771 6.3:+10566771 None:intergenic
ATCATAACGGTTAAAACCGT+TGG 0.507788 6.3:+10566532 None:intergenic
AAAACGGTCAATTGGTTCGT+AGG 0.516426 6.3:+10566796 None:intergenic
TTTACGTTGGTGATGATCAA+AGG 0.518538 6.3:-10566400 MS.gene83193:CDS
ACCAGTCTCTAGTGCAACAC+TGG 0.521902 6.3:+10566214 None:intergenic
ACCAGTGTTGCACTAGAGAC+TGG 0.528806 6.3:-10566215 MS.gene83193:intron
GACGGACAACGAACATGGAC+AGG 0.530375 6.3:-10566740 MS.gene83193:CDS
TTCAAATCATCACGTGACTT+AGG 0.533902 6.3:-10565509 MS.gene83193:CDS
TACCCTACTACTTATACCAA+CGG 0.537022 6.3:-10566548 MS.gene83193:CDS
TATTCTTTACCCGTCAGTAC+AGG 0.538429 6.3:-10566596 MS.gene83193:CDS
GACCCGAACATAACTAGGGC+GGG 0.541718 6.3:-10565389 MS.gene83193:CDS
ACAGACTCTTGAACCTAACA+TGG 0.543201 6.3:-10565469 MS.gene83193:CDS
GAGTCTGTTGAGAGTAGCAT+TGG 0.544374 6.3:+10565484 None:intergenic
TCGTACCTGTTATATCTGCT+GGG 0.545233 6.3:+10565576 None:intergenic
CCTGACAAAGTAAGTGAAGC+CGG 0.545307 6.3:+10565430 None:intergenic
AACCGTTGGTATAAGTAGTA+GGG 0.547927 6.3:+10566546 None:intergenic
GTCTCTAGTGCAACACTGGT+TGG 0.548580 6.3:+10566218 None:intergenic
TTGAAGGTGTAAGAGGGAGG+TGG 0.551545 6.3:+10566820 None:intergenic
TCACCAAACATTCAAGACAT+AGG 0.561007 6.3:-10565665 MS.gene83193:CDS
GGAGGTGGAAAAGTATAAGA+GGG 0.563249 6.3:+10566835 None:intergenic
CTGGTTGGAATAGTATATGC+TGG 0.566960 6.3:+10566233 None:intergenic
CCGGTTAAAGAGAAGAATAG+TGG 0.571765 6.3:-10565098 MS.gene83193:CDS
GGGACGAAGTCACGTGCTGT+TGG 0.575676 6.3:+10565596 None:intergenic
ACCTGACTACATAGCACCAA+AGG 0.586619 6.3:-10565537 MS.gene83193:CDS
GACCCCACAAGTGAAAATCC+AGG 0.594772 6.3:+10566266 None:intergenic
CGTTTATCTACAAGGAAATG+TGG 0.603064 6.3:-10565351 MS.gene83193:CDS
GAATTTAGGACCTGTACTGA+CGG 0.605805 6.3:+10566586 None:intergenic
ATAGTATAGATCGTCAGGCA+TGG 0.609043 6.3:+10566304 None:intergenic
TGTCCATGTTCGTTGTCCGT+CGG 0.618927 6.3:+10566742 None:intergenic
AATTTAGGACCTGTACTGAC+GGG 0.621399 6.3:+10566587 None:intergenic
TCTATACTATACACCACTTG+AGG 0.623227 6.3:-10566291 MS.gene83193:CDS
AATAGTATATGCTGGTATCA+CGG 0.623505 6.3:+10566241 None:intergenic
GAAAATCCAGGATCCTCAAG+TGG 0.646180 6.3:+10566278 None:intergenic
AGTCACGTGATGATTTGAAG+AGG 0.649942 6.3:+10565513 None:intergenic
GTAGGCTTGAAGGTGTAAGA+GGG 0.650988 6.3:+10566814 None:intergenic
ACAACAGGAAACTCTACCGA+CGG 0.654858 6.3:-10566758 MS.gene83193:CDS
GGCTTGAAGGTGTAAGAGGG+AGG 0.658222 6.3:+10566817 None:intergenic
CAGACTCTTGAACCTAACAT+GGG 0.666017 6.3:-10565468 MS.gene83193:CDS
AGTCGACCCGAACATAACTA+GGG 0.671905 6.3:-10565393 MS.gene83193:CDS
CGACCCGAACATAACTAGGG+CGG 0.687720 6.3:-10565390 MS.gene83193:CDS
CAGCAGATATAACAGGTACG+AGG 0.714901 6.3:-10565574 MS.gene83193:CDS
AGTATATGCTGGTATCACGG+TGG 0.756270 6.3:+10566244 None:intergenic
AAGTGAAGCCGGAATCAACG+GGG 0.756543 6.3:+10565441 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATTATGGTTTTATTAA+TGG - chr6.3:10565591-10565610 MS.gene83193:CDS 10.0%
!! TATATGTTTATAGGATTTAA+AGG + chr6.3:10566121-10566140 None:intergenic 15.0%
!! AATGTCATCCTATTATATAT+TGG - chr6.3:10566144-10566163 MS.gene83193:intron 20.0%
!! AGTGGAAATTCTAATAATTA+TGG - chr6.3:10565579-10565598 MS.gene83193:CDS 20.0%
!! ATATATAATAGGATGACATT+AGG + chr6.3:10566144-10566163 None:intergenic 20.0%
!! ATTTCTAATCCGTTTAAAAA+TGG + chr6.3:10566762-10566781 None:intergenic 20.0%
!! GTATGAATAAGTGAAAATTA+CGG - chr6.3:10566024-10566043 MS.gene83193:intron 20.0%
!! TATGAATAAGTGAAAATTAC+GGG - chr6.3:10566025-10566044 MS.gene83193:intron 20.0%
!! TTTCTAATCCGTTTAAAAAT+GGG + chr6.3:10566761-10566780 None:intergenic 20.0%
!!! AAAGAATATGTTATTTACGT+TGG - chr6.3:10565519-10565538 MS.gene83193:CDS 20.0%
!!! TTTTTTACCGTTATTTCAAA+TGG - chr6.3:10565426-10565445 MS.gene83193:CDS 20.0%
! AAAATTCAAATGCATGCTTA+TGG - chr6.3:10566723-10566742 MS.gene83193:CDS 25.0%
! AAATGGACACAAAATCAAAA+AGG - chr6.3:10566627-10566646 MS.gene83193:CDS 25.0%
! GAATGCAACCAATATATAAT+AGG + chr6.3:10566155-10566174 None:intergenic 25.0%
! GACATTAGGTATATGTTTAT+AGG + chr6.3:10566130-10566149 None:intergenic 25.0%
! TTACTATTACTTTCACTCTT+TGG + chr6.3:10566687-10566706 None:intergenic 25.0%
! TTATTAGAATTTCCACTACT+TGG + chr6.3:10565576-10565595 None:intergenic 25.0%
!! AAATTGCTACTTCTGTATTT+GGG + chr6.3:10565915-10565934 None:intergenic 25.0%
!! AAGCATGCATTTGAATTTTT+AGG + chr6.3:10566722-10566741 None:intergenic 25.0%
!! ATTTTCAAAATCAGTGATGT+TGG - chr6.3:10566780-10566799 MS.gene83193:CDS 25.0%
!! TGAATATGGAACTTTGTTTA+TGG + chr6.3:10565286-10565305 None:intergenic 25.0%
!! TGTGAAACCATTTGAAATAA+CGG + chr6.3:10565436-10565455 None:intergenic 25.0%
!!! ACTTTGTTTATGGAAGATTT+TGG + chr6.3:10565276-10565295 None:intergenic 25.0%
!!! ATGGTTTTGAAGTTTATCAA+TGG + chr6.3:10565069-10565088 None:intergenic 25.0%
AAAAAAAGACGGAGGAATTT+AGG + chr6.3:10565363-10565382 None:intergenic 30.0%
AAATGGTTTCACACTTCTTA+AGG - chr6.3:10565443-10565462 MS.gene83193:CDS 30.0%
AATAGTATATGCTGGTATCA+CGG + chr6.3:10565694-10565713 None:intergenic 30.0%
CACATTTCCTTGTAGATAAA+CGG + chr6.3:10566583-10566602 None:intergenic 30.0%
TAGTAGGGTAGAAAAAAAGA+CGG + chr6.3:10565374-10565393 None:intergenic 30.0%
TTTGATTCTGTAATCTGCAA+TGG + chr6.3:10566229-10566248 None:intergenic 30.0%
! CAAATTGCTACTTCTGTATT+TGG + chr6.3:10565916-10565935 None:intergenic 30.0%
!! AATGGTGACCCATTTTTAAA+CGG - chr6.3:10566750-10566769 MS.gene83193:CDS 30.0%
!! CGGTAAAAAAAGCATCATAA+CGG + chr6.3:10565416-10565435 None:intergenic 30.0%
!!! AACAAGCTGATGTTTTGAAA+TGG - chr6.3:10566610-10566629 MS.gene83193:CDS 30.0%
!!! TTGAGTTTTATTCCAAGTAG+TGG - chr6.3:10565561-10565580 MS.gene83193:CDS 30.0%
AAACCGTTGGTATAAGTAGT+AGG + chr6.3:10565390-10565409 None:intergenic 35.0%
AACCGTTGGTATAAGTAGTA+GGG + chr6.3:10565389-10565408 None:intergenic 35.0%
AAGTAAGTTGTACGCACAAA+TGG - chr6.3:10566091-10566110 MS.gene83193:intron 35.0%
ATCATAACGGTTAAAACCGT+TGG + chr6.3:10565403-10565422 None:intergenic 35.0%
ATGCCTATGTCTTGAATGTT+TGG + chr6.3:10566273-10566292 None:intergenic 35.0%
ATTCAAATGCATGCTTATGG+TGG - chr6.3:10566726-10566745 MS.gene83193:CDS 35.0%
CCACTATTCTTCTCTTTAAC+CGG + chr6.3:10566837-10566856 None:intergenic 35.0%
CGTTTATCTACAAGGAAATG+TGG - chr6.3:10566581-10566600 MS.gene83193:CDS 35.0%
GATAAACGAGCTGTTGAATA+TGG + chr6.3:10565300-10565319 None:intergenic 35.0%
GCAGATTACAGAATCAAAGT+TGG - chr6.3:10566231-10566250 MS.gene83193:CDS 35.0%
GTATAAGAGGGTGATGATTA+TGG + chr6.3:10565088-10565107 None:intergenic 35.0%
TACCCTACTACTTATACCAA+CGG - chr6.3:10565384-10565403 MS.gene83193:CDS 35.0%
TCACCAAACATTCAAGACAT+AGG - chr6.3:10566267-10566286 MS.gene83193:CDS 35.0%
TCATTAAACGCTGATGTTGA+AGG - chr6.3:10565477-10565496 MS.gene83193:CDS 35.0%
TCTATACTATACACCACTTG+AGG - chr6.3:10565641-10565660 MS.gene83193:CDS 35.0%
TGCCACAATTGAGGTTAAAA+CGG + chr6.3:10565155-10565174 None:intergenic 35.0%
TTCAAATCATCACGTGACTT+AGG - chr6.3:10566423-10566442 MS.gene83193:CDS 35.0%
TTGAGGTTAAAACGGTCAAT+TGG + chr6.3:10565147-10565166 None:intergenic 35.0%
TTGGAACAGAAACTGTTGTT+GGG + chr6.3:10565257-10565276 None:intergenic 35.0%
! TGCTGTTGGTGTTCTTAAAT+AGG + chr6.3:10566325-10566344 None:intergenic 35.0%
! TTTGGAACAGAAACTGTTGT+TGG + chr6.3:10565258-10565277 None:intergenic 35.0%
!! TTTACGTTGGTGATGATCAA+AGG - chr6.3:10565532-10565551 MS.gene83193:CDS 35.0%
ACAGACTCTTGAACCTAACA+TGG - chr6.3:10566463-10566482 MS.gene83193:CDS 40.0%
AGTCACGTGATGATTTGAAG+AGG + chr6.3:10566422-10566441 None:intergenic 40.0%
ATAGTATAGATCGTCAGGCA+TGG + chr6.3:10565631-10565650 None:intergenic 40.0%
ATGCATGCTTATGGTGGTAA+TGG - chr6.3:10566732-10566751 MS.gene83193:CDS 40.0%
CAGACTCTTGAACCTAACAT+GGG - chr6.3:10566464-10566483 MS.gene83193:CDS 40.0%
CATTCTCTTCATATGCCATC+GGG - chr6.3:10565763-10565782 MS.gene83193:intron 40.0%
CCGGTTAAAGAGAAGAATAG+TGG - chr6.3:10566834-10566853 MS.gene83193:CDS 40.0%
CTGGTTGGAATAGTATATGC+TGG + chr6.3:10565702-10565721 None:intergenic 40.0%
GATGATTTGAAGAGGTCCTT+TGG + chr6.3:10566414-10566433 None:intergenic 40.0%
GCATTCTCTTCATATGCCAT+CGG - chr6.3:10565762-10565781 MS.gene83193:intron 40.0%
GGTGTATAGTATAGATCGTC+AGG + chr6.3:10565636-10565655 None:intergenic 40.0%
GTCTTCACCGTTTATCTACA+AGG - chr6.3:10566573-10566592 MS.gene83193:CDS 40.0%
TAGGGTAGAAAAAAAGACGG+AGG + chr6.3:10565371-10565390 None:intergenic 40.0%
TATTCTTTACCCGTCAGTAC+AGG - chr6.3:10565336-10565355 MS.gene83193:CDS 40.0%
TCGTACCTGTTATATCTGCT+GGG + chr6.3:10566359-10566378 None:intergenic 40.0%
TCTTTAACCGGATCTGGATT+CGG + chr6.3:10566825-10566844 None:intergenic 40.0%
TTCTTCTCTTTAACCGGATC+TGG + chr6.3:10566831-10566850 None:intergenic 40.0%
! AATTTAGGACCTGTACTGAC+GGG + chr6.3:10565348-10565367 None:intergenic 40.0%
! ATCCTGGATTTTCACTTGTG+GGG - chr6.3:10565664-10565683 MS.gene83193:CDS 40.0%
! GAATTTAGGACCTGTACTGA+CGG + chr6.3:10565349-10565368 None:intergenic 40.0%
! GATCCTGGATTTTCACTTGT+GGG - chr6.3:10565663-10565682 MS.gene83193:CDS 40.0%
! GGAGGTGGAAAAGTATAAGA+GGG + chr6.3:10565100-10565119 None:intergenic 40.0%
!! AAAACGGTCAATTGGTTCGT+AGG + chr6.3:10565139-10565158 None:intergenic 40.0%
!! GACCGTTTTAACCTCAATTG+TGG - chr6.3:10565150-10565169 MS.gene83193:intron 40.0%
AACCTCAATTGTGGCACAAC+AGG - chr6.3:10565159-10565178 MS.gene83193:intron 45.0%
AAGTCGACCCGAACATAACT+AGG - chr6.3:10566538-10566557 MS.gene83193:CDS 45.0%
ACAACAGGAAACTCTACCGA+CGG - chr6.3:10565174-10565193 MS.gene83193:intron 45.0%
ACATAGGCATGCTCAGAAAC+TGG - chr6.3:10566283-10566302 MS.gene83193:CDS 45.0%
ACCTGACTACATAGCACCAA+AGG - chr6.3:10566395-10566414 MS.gene83193:CDS 45.0%
AGTATATGCTGGTATCACGG+TGG + chr6.3:10565691-10565710 None:intergenic 45.0%
AGTCGACCCGAACATAACTA+GGG - chr6.3:10566539-10566558 MS.gene83193:CDS 45.0%
CAGCAGATATAACAGGTACG+AGG - chr6.3:10566358-10566377 MS.gene83193:CDS 45.0%
CCTGACAAAGTAAGTGAAGC+CGG + chr6.3:10566505-10566524 None:intergenic 45.0%
CTCGTACCTGTTATATCTGC+TGG + chr6.3:10566360-10566379 None:intergenic 45.0%
GAAAATCCAGGATCCTCAAG+TGG + chr6.3:10565657-10565676 None:intergenic 45.0%
GAGTCTGTTGAGAGTAGCAT+TGG + chr6.3:10566451-10566470 None:intergenic 45.0%
GTAAGTGAAGCCGGAATCAA+CGG + chr6.3:10566496-10566515 None:intergenic 45.0%
GTGTCTTAACATGTACCCGA+TGG + chr6.3:10565781-10565800 None:intergenic 45.0%
TAAGTGAAGCCGGAATCAAC+GGG + chr6.3:10566495-10566514 None:intergenic 45.0%
TATACACCACTTGAGGATCC+TGG - chr6.3:10565648-10565667 MS.gene83193:CDS 45.0%
TTCCTGTTGTGCCACAATTG+AGG + chr6.3:10565164-10565183 None:intergenic 45.0%
TTCGTCCCAGCAGATATAAC+AGG - chr6.3:10566351-10566370 MS.gene83193:CDS 45.0%
! GGATCCTGGATTTTCACTTG+TGG - chr6.3:10565662-10565681 MS.gene83193:CDS 45.0%
! GGGAGGTGGAAAAGTATAAG+AGG + chr6.3:10565101-10565120 None:intergenic 45.0%
! GTAGGCTTGAAGGTGTAAGA+GGG + chr6.3:10565121-10565140 None:intergenic 45.0%
!! CAATTGGTTCGTAGGCTTGA+AGG + chr6.3:10565131-10565150 None:intergenic 45.0%
!! GTTGGTTCGAAGAATCTTGC+TGG - chr6.3:10566798-10566817 MS.gene83193:CDS 45.0%
!! TCCTTTGGTGCTATGTAGTC+AGG + chr6.3:10566399-10566418 None:intergenic 45.0%
AAGTGAAGCCGGAATCAACG+GGG + chr6.3:10566494-10566513 None:intergenic 50.0%
ACCAGTCTCTAGTGCAACAC+TGG + chr6.3:10565721-10565740 None:intergenic 50.0%
ACCAGTGTTGCACTAGAGAC+TGG - chr6.3:10565717-10565736 MS.gene83193:intron 50.0%
CAACGGGGAATTCCCATGTT+AGG + chr6.3:10566479-10566498 None:intergenic 50.0%
CCGGCTTCACTTACTTTGTC+AGG - chr6.3:10566502-10566521 MS.gene83193:CDS 50.0%
GACCCCACAAGTGAAAATCC+AGG + chr6.3:10565669-10565688 None:intergenic 50.0%
GTCTCTAGTGCAACACTGGT+TGG + chr6.3:10565717-10565736 None:intergenic 50.0%
TGTCCATGTTCGTTGTCCGT+CGG + chr6.3:10565193-10565212 None:intergenic 50.0%
! CGTAGGCTTGAAGGTGTAAG+AGG + chr6.3:10565122-10565141 None:intergenic 50.0%
! TCGGGTCGACTTCACAGAAA+TGG + chr6.3:10566530-10566549 None:intergenic 50.0%
! TTGAAGGTGTAAGAGGGAGG+TGG + chr6.3:10565115-10565134 None:intergenic 50.0%
!! TGGGAATTCCCCGTTGATTC+CGG - chr6.3:10566483-10566502 MS.gene83193:CDS 50.0%
CGACCCGAACATAACTAGGG+CGG - chr6.3:10566542-10566561 MS.gene83193:CDS 55.0%
CTACCGACGGACAACGAACA+TGG - chr6.3:10565187-10565206 MS.gene83193:intron 55.0%
GACCCGAACATAACTAGGGC+GGG - chr6.3:10566543-10566562 MS.gene83193:CDS 55.0%
GACGGACAACGAACATGGAC+AGG - chr6.3:10565192-10565211 MS.gene83193:intron 55.0%
TCGCCCGCCCTAGTTATGTT+CGG + chr6.3:10566549-10566568 None:intergenic 55.0%
TGCTGGACCGAATCCAGATC+CGG - chr6.3:10566815-10566834 MS.gene83193:CDS 55.0%
! GGCTTGAAGGTGTAAGAGGG+AGG + chr6.3:10565118-10565137 None:intergenic 55.0%
CGCCCGCCCTAGTTATGTTC+GGG + chr6.3:10566548-10566567 None:intergenic 60.0%
GGGACGAAGTCACGTGCTGT+TGG + chr6.3:10566339-10566358 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 10565060 10566894 10565060 ID=MS.gene83193
chr6.3 mRNA 10565060 10566894 10565060 ID=MS.gene83193.t1;Parent=MS.gene83193
chr6.3 exon 10566216 10566894 10566216 ID=MS.gene83193.t1.exon1;Parent=MS.gene83193.t1
chr6.3 CDS 10566216 10566894 10566216 ID=cds.MS.gene83193.t1;Parent=MS.gene83193.t1
chr6.3 exon 10565306 10565719 10565306 ID=MS.gene83193.t1.exon2;Parent=MS.gene83193.t1
chr6.3 CDS 10565306 10565719 10565306 ID=cds.MS.gene83193.t1;Parent=MS.gene83193.t1
chr6.3 exon 10565060 10565160 10565060 ID=MS.gene83193.t1.exon3;Parent=MS.gene83193.t1
chr6.3 CDS 10565060 10565160 10565060 ID=cds.MS.gene83193.t1;Parent=MS.gene83193.t1
Gene Sequence

>MS.gene83193

ATGAAACCATTGATAAACTTCAAAACCATAATCATCACCCTCTTATACTTTTCCACCTCCCTCTTACACCTTCAAGCCTACGAACCAATTGACCGTTTTAACCTCAATTGTGGCACAACAGGAAACTCTACCGACGGACAACGAACATGGACAGGAGACATAAACTCAAAACTTTTGTCATCATTACAAAACAACCCAACAACAGTTTCTGTTCCAAAATCTTCCATAAACAAAGTTCCATATTCAACAGCTCGTTTATCACACTCAATATTCAACTATTCTTTACCCGTCAGTACAGGTCCTAAATTCCTCCGTCTTTTTTTCTACCCTACTACTTATACCAACGGTTTTAACCGTTATGATGCTTTTTTTACCGTTATTTCAAATGGTTTCACACTTCTTAAGGATTTTAATGCTTCATTAAACGCTGATGTTGAAGGTGTTGTTGATACTATATTGAAAGAATATGTTATTTACGTTGGTGATGATCAAAGGCTTGATTTGAGTTTTATTCCAAGTAGTGGAAATTCTAATAATTATGGTTTTATTAATGGAATTGAAGTCTTATCCATGCCTGACGATCTATACTATACACCACTTGAGGATCCTGGATTTTCACTTGTGGGGTCCACCGTGATACCAGCATATACTATTCCAACCAGTGTTGCACTAGAGACTGGTAAAACAATTCAAGTTAACTTAGCATTCTCTTCATATGCCATCGGGTACATGTTAAGACACTAAAGATTGAAATTATGTATTGAAAATTGTTCTATTTTATTTCTTAAAATTTTAATTTTTTCTTAATAAATATTTATTATTTGTGTCATCTTTAACATGTACACTTCATGACCCAAATACAGAAGTAGCAATTTGCATTCAACAAAACAATTTTTAAAAGTTTTATAATTGTATGCATGACTTTGAAATAGATTATTTTTAGTGACAAGAATCACTTTCTTAAGTATGAATAAGTGAAAATTACGGGTTCAATTCTGCGTTTCAACATATCAAACATCATTAGAGCTATCAAGTAAGTTGTACGCACAAATGGATTTCCTTTAAATCCTATAAACATATACCTAATGTCATCCTATTATATATTGGTTGCATTCTTTTTAAGCATTTAACAAAAACAAACTTTTGATAACAAAAATCAATACACTCCATTGCAGATTACAGAATCAAAGTTGGAGTGCAAGAAAACTCACCAAACATTCAAGACATAGGCATGCTCAGAAACTGGAACATCAATGACACAACCTATTTAAGAACACCAACAGCACGTGACTTCGTCCCAGCAGATATAACAGGTACGAGGAACATAACTGTAAAACCTGACTACATAGCACCAAAGGACCTCTTCAAATCATCACGTGACTTAGGAACCAATGCTACTCTCAACAGACTCTTGAACCTAACATGGGAATTCCCCGTTGATTCCGGCTTCACTTACTTTGTCAGGCTCCATTTCTGTGAAGTCGACCCGAACATAACTAGGGCGGGCGATAGAGTCTTCACCGTTTATCTACAAGGAAATGTGGCTGAAGAACAAGCTGATGTTTTGAAATGGACACAAAATCAAAAAGGTCTTGCAGTGCAACGAAACTACGCAGTTTTGATTCCAAAGAGTGAAAGTAATAGTAACAAAAAAGTTAACCTAAAAATTCAAATGCATGCTTATGGTGGTAATGGTGACCCATTTTTAAACGGATTAGAAATTTTCAAAATCAGTGATGTTGGTTCGAAGAATCTTGCTGGACCGAATCCAGATCCGGTTAAAGAGAAGAATAGTGGAACGACAAAAATTATACTCAAAATGCATACCACTATAA
Protein sequence

>MS.gene83193.t1

MKPLINFKTIIITLLYFSTSLLHLQAYEPIDRFNLNCGTTGNSTDGQRTWTGDINSKLLSSLQNNPTTVSVPKSSINKVPYSTARLSHSIFNYSLPVSTGPKFLRLFFYPTTYTNGFNRYDAFFTVISNGFTLLKDFNASLNADVEGVVDTILKEYVIYVGDDQRLDLSFIPSSGNSNNYGFINGIEVLSMPDDLYYTPLEDPGFSLVGSTVIPAYTIPTSVALETDYRIKVGVQENSPNIQDIGMLRNWNINDTTYLRTPTARDFVPADITGTRNITVKPDYIAPKDLFKSSRDLGTNATLNRLLNLTWEFPVDSGFTYFVRLHFCEVDPNITRAGDRVFTVYLQGNVAEEQADVLKWTQNQKVMLVRRILLDRIQIRLKRRIVERQKLYSKCIPL