AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052615


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052615.t1 MTR_3g075230 98.452 323 5 0 1 323 1 323 0.0 654
MS.gene052615.t1 MTR_8g090025 40.486 247 127 6 82 311 65 308 8.84e-55 181
MS.gene052615.t1 MTR_8g090025 41.202 233 119 5 82 297 65 296 1.89e-54 181
MS.gene052615.t1 MTR_0937s0020 37.712 236 138 4 71 303 520 749 6.81e-38 143
MS.gene052615.t1 MTR_2g029350 34.868 152 90 5 82 227 74 222 2.58e-20 90.9
MS.gene052615.t1 MTR_4g091060 32.609 138 92 1 182 319 34 170 4.03e-13 69.3
MS.gene052615.t1 MTR_7g112140 31.034 203 124 6 81 282 74 261 7.29e-13 69.7
MS.gene052615.t1 MTR_7g112140 31.034 203 124 6 81 282 74 261 7.59e-13 69.7
MS.gene052615.t1 MTR_4g091060 32.609 138 92 1 182 319 93 229 1.76e-12 67.8
MS.gene052615.t1 MTR_4g091060 32.609 138 92 1 182 319 93 229 3.66e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052615.t1 AT3G48420 81.588 277 47 2 50 323 44 319 4.53e-160 449
MS.gene052615.t1 AT4G39970 38.431 255 140 6 58 297 42 294 1.07e-50 171
MS.gene052615.t1 AT5G45170 29.289 239 148 9 10 233 1 233 5.78e-18 83.6
MS.gene052615.t1 AT5G45170 29.289 239 148 9 10 233 1 233 8.51e-18 83.6
MS.gene052615.t1 AT1G56500 29.675 246 129 8 55 282 43 262 2.48e-13 71.2
MS.gene052615.t1 AT1G56500 32.843 204 119 7 81 282 75 262 2.76e-13 71.2
MS.gene052615.t1 AT4G21470 29.661 236 140 9 79 310 10 223 6.50e-12 66.2

Find 64 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACGGTGAATTGCTCAAAAT+TGG 0.190541 3.1:-61912898 MS.gene052615:CDS
CCACGTCTCCTGCAAATATC+TGG 0.290444 3.1:+61911906 None:intergenic
GATCCTTCTTGTTGTGCTTA+AGG 0.294915 3.1:+61913607 None:intergenic
TGCAATAGTATCATGTTTAC+TGG 0.316202 3.1:-61911951 MS.gene052615:CDS
TCCTGAGGAGAGATTTGATT+TGG 0.337964 3.1:-61911040 MS.gene052615:CDS
GCAACTCAACCTACGCCTTC+TGG 0.346804 3.1:+61913518 None:intergenic
AACATACAGGCTTGTCGATC+AGG 0.380787 3.1:-61912211 MS.gene052615:intron
CAACAATGAAGCAGAGGAAA+TGG 0.387924 3.1:+61913671 None:intergenic
GCGAAAATCCAGATATTTGC+AGG 0.398864 3.1:-61911914 MS.gene052615:CDS
GCGAAAGACAGAACTATTCA+TGG 0.402161 3.1:-61912691 MS.gene052615:CDS
GATGCTGTATTTGACTTCAT+TGG 0.403312 3.1:-61911069 MS.gene052615:CDS
TATACATACCGCCTTCTCAT+TGG 0.409078 3.1:+61912149 None:intergenic
GATGAAAATCTTACTGGATC+AGG 0.425148 3.1:+61911869 None:intergenic
AGAAAGAACTAGGCGTTACC+TGG 0.431412 3.1:-61912933 MS.gene052615:CDS
CTAGCAGCAGCTAAAGCAGC+TGG 0.444999 3.1:-61911313 MS.gene052615:CDS
GTGGTCGAGGACAGTGCAAT+AGG 0.458037 3.1:-61911337 MS.gene052615:CDS
GAGTTGCTCAGCCTCGGCTT+CGG 0.462076 3.1:-61913502 MS.gene052615:CDS
AAGAGCTTTGACAGTGAAAG+AGG 0.462364 3.1:+61913560 None:intergenic
TGAGTTGTGCAGAAAGAACT+AGG 0.472615 3.1:-61912943 MS.gene052615:intron
TAGGTTGAGTTGCTCAGCCT+CGG 0.485144 3.1:-61913508 MS.gene052615:CDS
GCTTGCAGCTAGTATATAGA+TGG 0.488092 3.1:+61911684 None:intergenic
CTCTCGGTGTTGAACCTTCG+AGG 0.492187 3.1:-61911660 MS.gene052615:intron
GCCAAATCAAATCTCTCCTC+AGG 0.492266 3.1:+61911039 None:intergenic
ACCTGGGACGTGGAATTGTA+CGG 0.498073 3.1:-61912916 MS.gene052615:CDS
TCACCGGTCGGTGCATTCGC+AGG 0.502591 3.1:+61912750 None:intergenic
GTAACCAACTTTGCAACACC+TGG 0.507072 3.1:+61912636 None:intergenic
TTACAGATGTGTCGTGGTCG+AGG 0.524433 3.1:-61911350 MS.gene052615:intron
CCTTCTTGTTGTGCTTAAGG+AGG 0.524553 3.1:+61913610 None:intergenic
GTCGATCAGGCTTTAACTCA+AGG 0.530696 3.1:-61912198 MS.gene052615:CDS
ACCGTACAATTCCACGTCCC+AGG 0.534371 3.1:+61912915 None:intergenic
TGACATATTGCTTCTCAAGA+AGG 0.536995 3.1:+61911004 None:intergenic
TTTCTTTCTTGTTCACCGGT+CGG 0.536996 3.1:+61912738 None:intergenic
ATACTAGCTGCAAGCACTCT+CGG 0.540283 3.1:-61911676 MS.gene052615:CDS
AAACTGTTGCCTCTTCGCCC+AGG 0.546839 3.1:-61912654 MS.gene052615:CDS
TTGCAGCACTTCCAATGAGA+AGG 0.567771 3.1:-61912160 MS.gene052615:CDS
GGTGAATTGCTCAAAATTGG+AGG 0.570888 3.1:-61912895 MS.gene052615:CDS
GAATTGCTCAAAATTGGAGG+TGG 0.571113 3.1:-61912892 MS.gene052615:CDS
TGGCCTGCGAATGCACCGAC+CGG 0.571608 3.1:-61912753 MS.gene052615:CDS
ACAGCGTACTTTAACAAGAC+AGG 0.572132 3.1:-61912777 MS.gene052615:CDS
AGTGTATAGTAACAAAGAGC+GGG 0.580787 3.1:-61911285 MS.gene052615:intron
CCAGATATTTGCAGGAGACG+TGG 0.583159 3.1:-61911906 MS.gene052615:CDS
CCTCCTTAAGCACAACAAGA+AGG 0.586129 3.1:-61913610 MS.gene052615:CDS
TAGCAGCAGCTAAAGCAGCT+GGG 0.588153 3.1:-61911312 MS.gene052615:CDS
AGCATGAGGCACCTCTTGGA+AGG 0.594170 3.1:+61913386 None:intergenic
GCAATAGTATCATGTTTACT+GGG 0.601679 3.1:-61911950 MS.gene052615:CDS
TTTGCAACACCTGGGCGAAG+AGG 0.605369 3.1:+61912645 None:intergenic
CGTAGAAGATGCCGAAGCCG+AGG 0.606005 3.1:+61913491 None:intergenic
GATGCTATTTGTTGATGCCA+TGG 0.609340 3.1:+61913698 None:intergenic
TGTTATTTACAGATGTGTCG+TGG 0.617481 3.1:-61911356 MS.gene052615:intron
CGTACTTTAACAAGACAGGC+TGG 0.620399 3.1:-61912773 MS.gene052615:CDS
ACTAGGCGTTACCTGGGACG+TGG 0.621198 3.1:-61912926 MS.gene052615:CDS
AAATTGGAGGTGGAAAAGAA+AGG 0.623022 3.1:-61912882 MS.gene052615:intron
CTTCATTGGTGATCCTCCTG+AGG 0.623430 3.1:-61911055 MS.gene052615:CDS
TCGATTCAACAATGAAGCAG+AGG 0.624993 3.1:+61913665 None:intergenic
AAATCAAATCTCTCCTCAGG+AGG 0.626804 3.1:+61911042 None:intergenic
AAGTGTATAGTAACAAAGAG+CGG 0.628437 3.1:-61911286 MS.gene052615:CDS
CTTCAACAGCCAGAAGGCGT+AGG 0.634274 3.1:-61913527 MS.gene052615:CDS
TTTCAATGATACCTTCCAAG+AGG 0.634885 3.1:-61913397 MS.gene052615:intron
GAAAGAACTAGGCGTTACCT+GGG 0.638091 3.1:-61912932 MS.gene052615:CDS
TATCAACTTCAACAGCCAGA+AGG 0.643554 3.1:-61913533 MS.gene052615:CDS
TAACCAACTTTGCAACACCT+GGG 0.652911 3.1:+61912637 None:intergenic
CAGCACTTCCAATGAGAAGG+CGG 0.658354 3.1:-61912157 MS.gene052615:intron
AGGTATCATTGAAAGAAATG+CGG 0.709896 3.1:+61913406 None:intergenic
ACTATTATGAGATACCTCGA+AGG 0.710353 3.1:+61911646 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTAAATAAATTCATTTAT+TGG - chr3.1:61912143-61912162 MS.gene052615:intron 10.0%
!! TGTAAATAAATTCATTTATT+GGG - chr3.1:61912144-61912163 MS.gene052615:intron 10.0%
!!! TGTAAAATGTTTTTTTTTTT+TGG + chr3.1:61911581-61911600 None:intergenic 10.0%
!! AACATTATAAATAATGAGTA+TGG + chr3.1:61912112-61912131 None:intergenic 15.0%
!! ATTCAATCATATAGTAAAAA+AGG + chr3.1:61912944-61912963 None:intergenic 15.0%
!!! AAATAATATTAGCCTATTAA+GGG + chr3.1:61912336-61912355 None:intergenic 15.0%
!!! GTATATTTCTATTTACTAAA+TGG - chr3.1:61913438-61913457 MS.gene052615:CDS 15.0%
!!! TAAATAATATTAGCCTATTA+AGG + chr3.1:61912337-61912356 None:intergenic 15.0%
!!! TCTATGTAATTTTTTTTCAT+AGG - chr3.1:61913469-61913488 MS.gene052615:CDS 15.0%
!!! TTTTGAATGTTAACTTAAAT+TGG + chr3.1:61912252-61912271 None:intergenic 15.0%
!! AAGATACACATAATAAGATA+AGG + chr3.1:61912463-61912482 None:intergenic 20.0%
!! TAGTTGGAAAAATTCATTTA+AGG + chr3.1:61912594-61912613 None:intergenic 20.0%
!! TTTATTCATAACTGCAATAT+CGG - chr3.1:61912669-61912688 MS.gene052615:CDS 20.0%
!!! AATAACTTGCTCTAAAATTT+TGG + chr3.1:61913263-61913282 None:intergenic 20.0%
!!! AGGAATTGATTCTATAAAAT+GGG + chr3.1:61912630-61912649 None:intergenic 20.0%
!!! TACAACATTTGATTTTATGA+TGG + chr3.1:61913195-61913214 None:intergenic 20.0%
!!! TAGGAATTGATTCTATAAAA+TGG + chr3.1:61912631-61912650 None:intergenic 20.0%
!!! TGCTAATTTTTTAGATTTTC+AGG - chr3.1:61912862-61912881 MS.gene052615:intron 20.0%
!!! TTATTTGTTTTTGAACTGTA+TGG - chr3.1:61913295-61913314 MS.gene052615:intron 20.0%
! ACAATTGATGTGTTTATTGT+AGG - chr3.1:61911898-61911917 MS.gene052615:CDS 25.0%
! ATATGATTGAATGTTCAGTA+TGG - chr3.1:61912952-61912971 MS.gene052615:intron 25.0%
! ATCCTATAACATCTTTATAC+TGG - chr3.1:61911625-61911644 MS.gene052615:intron 25.0%
! ATTTATTTGTATTCCATCTC+AGG - chr3.1:61912698-61912717 MS.gene052615:CDS 25.0%
! CTTTAAATTACACAAGACAT+TGG - chr3.1:61913130-61913149 MS.gene052615:intron 25.0%
! TATACACTACAGTTAAACAA+TGG - chr3.1:61912916-61912935 MS.gene052615:CDS 25.0%
! TATCTTTCTTTCAAACATAC+AGG - chr3.1:61912477-61912496 MS.gene052615:intron 25.0%
!! AAATGAATTTTTCCAACTAC+AGG - chr3.1:61912595-61912614 MS.gene052615:intron 25.0%
!! AACAAAGATTAAAAAGCATG+AGG + chr3.1:61911332-61911351 None:intergenic 25.0%
!! AATGAATTTTTCCAACTACA+GGG - chr3.1:61912596-61912615 MS.gene052615:intron 25.0%
!!! AACTAGTTTGTTGTTTTCAT+CGG + chr3.1:61911522-61911541 None:intergenic 25.0%
!!! CTTATAAGTGTTGTTGTTTT+TGG + chr3.1:61911071-61911090 None:intergenic 25.0%
!!! GATTTTATGATGGATACATT+TGG + chr3.1:61913185-61913204 None:intergenic 25.0%
!!! TAGTGGTTATGTTAGTTTTT+GGG - chr3.1:61913509-61913528 MS.gene052615:CDS 25.0%
!!! TTAGTGGTTATGTTAGTTTT+TGG - chr3.1:61913508-61913527 MS.gene052615:CDS 25.0%
AAACGATTATTAGTGTTTGG+TGG - chr3.1:61911673-61911692 MS.gene052615:CDS 30.0%
AACACTAATAATCGTTTCCA+AGG + chr3.1:61911670-61911689 None:intergenic 30.0%
AAGTGTATAGTAACAAAGAG+CGG - chr3.1:61913415-61913434 MS.gene052615:CDS 30.0%
AGCCAGTATAAAGATGTTAT+AGG + chr3.1:61911630-61911649 None:intergenic 30.0%
AGGTATCATTGAAAGAAATG+CGG + chr3.1:61911298-61911317 None:intergenic 30.0%
AGTACACACAAGTAACTAAT+AGG + chr3.1:61912650-61912669 None:intergenic 30.0%
ATGTGGAAATATCCCTTAAT+AGG - chr3.1:61912321-61912340 MS.gene052615:intron 30.0%
CAAGAATGAAATCACATTGA+AGG + chr3.1:61913561-61913580 None:intergenic 30.0%
CAAGACATTGGAAAAGTTAA+TGG - chr3.1:61913142-61913161 MS.gene052615:intron 30.0%
CTTGTAGATACTGAAAAAGA+TGG - chr3.1:61911269-61911288 MS.gene052615:intron 30.0%
GCAATAGTATCATGTTTACT+GGG - chr3.1:61912751-61912770 MS.gene052615:CDS 30.0%
TAGTACTCCATATACTAGTT+AGG + chr3.1:61913085-61913104 None:intergenic 30.0%
TGCAATAGTATCATGTTTAC+TGG - chr3.1:61912750-61912769 MS.gene052615:CDS 30.0%
TGCAATGATGAAAATCTTAC+TGG + chr3.1:61912841-61912860 None:intergenic 30.0%
TGGAAACGATTATTAGTGTT+TGG - chr3.1:61911670-61911689 MS.gene052615:CDS 30.0%
TTAATTACCTGCTAAGTAGT+TGG - chr3.1:61912290-61912309 MS.gene052615:intron 30.0%
TTATAAACCAACTACTTAGC+AGG + chr3.1:61912300-61912319 None:intergenic 30.0%
! AATTTAGTTTCGAAACAGCT+AGG - chr3.1:61912211-61912230 MS.gene052615:intron 30.0%
! AGAATCGTTGATTACATTGA+GGG - chr3.1:61911477-61911496 MS.gene052615:intron 30.0%
! AGTAGTTGGTTTATAACATG+TGG - chr3.1:61912304-61912323 MS.gene052615:intron 30.0%
! ATCTTTTCTTTCTTGTTCAC+CGG + chr3.1:61911970-61911989 None:intergenic 30.0%
!! ACACACTTGTTATGGTTAAA+AGG + chr3.1:61911731-61911750 None:intergenic 30.0%
!!! AGAGCTGTTTCTTTTATATC+AGG - chr3.1:61912421-61912440 MS.gene052615:intron 30.0%
!!! AGATTTGATTTGGCATTTTG+TGG - chr3.1:61913671-61913690 MS.gene052615:CDS 30.0%
!!! CATCTTTTTCAGTATCTACA+AGG + chr3.1:61911271-61911290 None:intergenic 30.0%
!!! TTAGTTTTTGGGATCGAATT+CGG - chr3.1:61913520-61913539 MS.gene052615:CDS 30.0%
AAATTGGAGGTGGAAAAGAA+AGG - chr3.1:61911819-61911838 MS.gene052615:intron 35.0%
AATCGAAAACTCAAGCCATT+AGG + chr3.1:61912175-61912194 None:intergenic 35.0%
ACTATTATGAGATACCTCGA+AGG + chr3.1:61913058-61913077 None:intergenic 35.0%
AGTCATGCCTAACTAGTATA+TGG - chr3.1:61913075-61913094 MS.gene052615:intron 35.0%
AGTGTATAGTAACAAAGAGC+GGG - chr3.1:61913416-61913435 MS.gene052615:CDS 35.0%
CAGAGATGATAGTAAGTTAG+TGG - chr3.1:61913492-61913511 MS.gene052615:CDS 35.0%
CTGAAATCAACTCATGACTT+AGG + chr3.1:61912725-61912744 None:intergenic 35.0%
GATGAAAATCTTACTGGATC+AGG + chr3.1:61912835-61912854 None:intergenic 35.0%
TACGGTGAATTGCTCAAAAT+TGG - chr3.1:61911803-61911822 MS.gene052615:intron 35.0%
TCAGTATGGTATGATCTATG+TGG - chr3.1:61912966-61912985 MS.gene052615:intron 35.0%
TGACATATTGCTTCTCAAGA+AGG + chr3.1:61913700-61913719 None:intergenic 35.0%
TGATCTCAAATGTATCATGC+AGG - chr3.1:61913579-61913598 MS.gene052615:CDS 35.0%
TTTCAATGATACCTTCCAAG+AGG - chr3.1:61911304-61911323 MS.gene052615:CDS 35.0%
TTTCCAACTACAGGGAAAAA+CGG - chr3.1:61912604-61912623 MS.gene052615:intron 35.0%
! AACAACAGACACACTTGTTA+TGG + chr3.1:61911739-61911758 None:intergenic 35.0%
! ATTTATTGGGTGTCACCTAA+TGG - chr3.1:61912157-61912176 MS.gene052615:intron 35.0%
! GAGAATCGTTGATTACATTG+AGG - chr3.1:61911476-61911495 MS.gene052615:intron 35.0%
! GATGCTGTATTTGACTTCAT+TGG - chr3.1:61913632-61913651 MS.gene052615:CDS 35.0%
! TGTTATTTACAGATGTGTCG+TGG - chr3.1:61913345-61913364 MS.gene052615:intron 35.0%
!! CTAAGTCATGAGTTGATTTC+AGG - chr3.1:61912723-61912742 MS.gene052615:CDS 35.0%
!!! TAGTTTTTGGGATCGAATTC+GGG - chr3.1:61913521-61913540 MS.gene052615:CDS 35.0%
!!! TTACTGGATCAGGCTTTTTT+CGG + chr3.1:61912825-61912844 None:intergenic 35.0%
AAATCAAATCTCTCCTCAGG+AGG + chr3.1:61913662-61913681 None:intergenic 40.0%
ACAGCGTACTTTAACAAGAC+AGG - chr3.1:61911924-61911943 MS.gene052615:CDS 40.0%
ACAGTCAAAAAGAAGAGCTG+AGG + chr3.1:61911240-61911259 None:intergenic 40.0%
CAACAATGAAGCAGAGGAAA+TGG + chr3.1:61911033-61911052 None:intergenic 40.0%
CAATTCTACAGTTGCTGGAT+AGG + chr3.1:61913223-61913242 None:intergenic 40.0%
CAGTCAAAAAGAAGAGCTGA+GGG + chr3.1:61911239-61911258 None:intergenic 40.0%
CCAGCAACTGTAGAATTGTA+TGG - chr3.1:61913225-61913244 MS.gene052615:intron 40.0%
CCATACAATTCTACAGTTGC+TGG + chr3.1:61913228-61913247 None:intergenic 40.0%
GAATTGCTCAAAATTGGAGG+TGG - chr3.1:61911809-61911828 MS.gene052615:intron 40.0%
GCGAAAATCCAGATATTTGC+AGG - chr3.1:61912787-61912806 MS.gene052615:intron 40.0%
GCGAAAGACAGAACTATTCA+TGG - chr3.1:61912010-61912029 MS.gene052615:intron 40.0%
GCTTGCAGCTAGTATATAGA+TGG + chr3.1:61913020-61913039 None:intergenic 40.0%
GGTGAATTGCTCAAAATTGG+AGG - chr3.1:61911806-61911825 MS.gene052615:intron 40.0%
TAACCAACTTTGCAACACCT+GGG + chr3.1:61912067-61912086 None:intergenic 40.0%
TATACATACCGCCTTCTCAT+TGG + chr3.1:61912555-61912574 None:intergenic 40.0%
TATCAACTTCAACAGCCAGA+AGG - chr3.1:61911168-61911187 MS.gene052615:intron 40.0%
TCCTGAGGAGAGATTTGATT+TGG - chr3.1:61913661-61913680 MS.gene052615:CDS 40.0%
TCGATTCAACAATGAAGCAG+AGG + chr3.1:61911039-61911058 None:intergenic 40.0%
TGAGTTGTGCAGAAAGAACT+AGG - chr3.1:61911758-61911777 MS.gene052615:intron 40.0%
TGTGTTATGCTCTTTGTGAC+AGG - chr3.1:61912994-61913013 MS.gene052615:intron 40.0%
TTTCTTTCTTGTTCACCGGT+CGG + chr3.1:61911966-61911985 None:intergenic 40.0%
! AAGAGCTTTGACAGTGAAAG+AGG + chr3.1:61911144-61911163 None:intergenic 40.0%
! GATCCTTCTTGTTGTGCTTA+AGG + chr3.1:61911097-61911116 None:intergenic 40.0%
! GATGCTATTTGTTGATGCCA+TGG + chr3.1:61911006-61911025 None:intergenic 40.0%
!! GCTCTTCTTTTTGACTGTGA+TGG - chr3.1:61911242-61911261 MS.gene052615:intron 40.0%
!!! TACTGGATCAGGCTTTTTTC+GGG + chr3.1:61912824-61912843 None:intergenic 40.0%
AACATACAGGCTTGTCGATC+AGG - chr3.1:61912490-61912509 MS.gene052615:intron 45.0%
AGAAAGAACTAGGCGTTACC+TGG - chr3.1:61911768-61911787 MS.gene052615:intron 45.0%
ATACTAGCTGCAAGCACTCT+CGG - chr3.1:61913025-61913044 MS.gene052615:intron 45.0%
CCTCCTTAAGCACAACAAGA+AGG - chr3.1:61911091-61911110 MS.gene052615:CDS 45.0%
CGTACTTTAACAAGACAGGC+TGG - chr3.1:61911928-61911947 MS.gene052615:CDS 45.0%
GAAAGAACTAGGCGTTACCT+GGG - chr3.1:61911769-61911788 MS.gene052615:intron 45.0%
GCCAAATCAAATCTCTCCTC+AGG + chr3.1:61913665-61913684 None:intergenic 45.0%
GTAACCAACTTTGCAACACC+TGG + chr3.1:61912068-61912087 None:intergenic 45.0%
TCATGACTTAGGTCCTGAGA+TGG + chr3.1:61912714-61912733 None:intergenic 45.0%
TTGCAGCACTTCCAATGAGA+AGG - chr3.1:61912541-61912560 MS.gene052615:intron 45.0%
! AAAAAGCATGAGGCACCTCT+TGG + chr3.1:61911322-61911341 None:intergenic 45.0%
! CCTTCTTGTTGTGCTTAAGG+AGG + chr3.1:61911094-61911113 None:intergenic 45.0%
! GTCGATCAGGCTTTAACTCA+AGG - chr3.1:61912503-61912522 MS.gene052615:intron 45.0%
!!! ACTGGATCAGGCTTTTTTCG+GGG + chr3.1:61912823-61912842 None:intergenic 45.0%
ACCTGGGACGTGGAATTGTA+CGG - chr3.1:61911785-61911804 MS.gene052615:intron 50.0%
CAGCACTTCCAATGAGAAGG+CGG - chr3.1:61912544-61912563 MS.gene052615:intron 50.0%
CCACGTCTCCTGCAAATATC+TGG + chr3.1:61912798-61912817 None:intergenic 50.0%
CCAGATATTTGCAGGAGACG+TGG - chr3.1:61912795-61912814 MS.gene052615:intron 50.0%
TAGCAGCAGCTAAAGCAGCT+GGG - chr3.1:61913389-61913408 MS.gene052615:intron 50.0%
TTACAGATGTGTCGTGGTCG+AGG - chr3.1:61913351-61913370 MS.gene052615:intron 50.0%
! CTTCATTGGTGATCCTCCTG+AGG - chr3.1:61913646-61913665 MS.gene052615:CDS 50.0%
! TAGGTTGAGTTGCTCAGCCT+CGG - chr3.1:61911193-61911212 MS.gene052615:intron 50.0%
AAACTGTTGCCTCTTCGCCC+AGG - chr3.1:61912047-61912066 MS.gene052615:intron 55.0%
ACCGTACAATTCCACGTCCC+AGG + chr3.1:61911789-61911808 None:intergenic 55.0%
CTAGCAGCAGCTAAAGCAGC+TGG - chr3.1:61913388-61913407 MS.gene052615:intron 55.0%
GCAACTCAACCTACGCCTTC+TGG + chr3.1:61911186-61911205 None:intergenic 55.0%
GTGGTCGAGGACAGTGCAAT+AGG - chr3.1:61913364-61913383 MS.gene052615:intron 55.0%
TTTGCAACACCTGGGCGAAG+AGG + chr3.1:61912059-61912078 None:intergenic 55.0%
! AGCATGAGGCACCTCTTGGA+AGG + chr3.1:61911318-61911337 None:intergenic 55.0%
! CTTCAACAGCCAGAAGGCGT+AGG - chr3.1:61911174-61911193 MS.gene052615:intron 55.0%
! TCGCCCAGGTGTTGCAAAGT+TGG - chr3.1:61912061-61912080 MS.gene052615:intron 55.0%
! TGGATTTTCGCTGCTCGCTC+AGG + chr3.1:61912778-61912797 None:intergenic 55.0%
!! CTCTCGGTGTTGAACCTTCG+AGG - chr3.1:61913041-61913060 MS.gene052615:intron 55.0%
!! TACTGGCTCAACCACCAGAG+CGG - chr3.1:61911642-61911661 MS.gene052615:intron 55.0%
!!! GGGCCGTTTTTCCCTGTAGT+TGG + chr3.1:61912610-61912629 None:intergenic 55.0%
ACTAGGCGTTACCTGGGACG+TGG - chr3.1:61911775-61911794 MS.gene052615:intron 60.0%
CGTAGAAGATGCCGAAGCCG+AGG + chr3.1:61911213-61911232 None:intergenic 60.0%
GAGTTGCTCAGCCTCGGCTT+CGG - chr3.1:61911199-61911218 MS.gene052615:intron 60.0%
TCACCGGTCGGTGCATTCGC+AGG + chr3.1:61911954-61911973 None:intergenic 65.0%
! TGGCCTGCGAATGCACCGAC+CGG - chr3.1:61911948-61911967 MS.gene052615:CDS 65.0%
!! TCGTTTCCAAGGCGCCGCTC+TGG + chr3.1:61911659-61911678 None:intergenic 65.0%
!! TTTCCAAGGCGCCGCTCTGG+TGG + chr3.1:61911656-61911675 None:intergenic 65.0%
CAACCACCAGAGCGGCGCCT+TGG - chr3.1:61911650-61911669 MS.gene052615:intron 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 61910999 61913724 61910999 ID=MS.gene052615
chr3.1 mRNA 61910999 61913724 61910999 ID=MS.gene052615.t1;Parent=MS.gene052615
chr3.1 exon 61913398 61913724 61913398 ID=MS.gene052615.t1.exon1;Parent=MS.gene052615.t1
chr3.1 CDS 61913398 61913724 61913398 ID=cds.MS.gene052615.t1;Parent=MS.gene052615.t1
chr3.1 exon 61912883 61912953 61912883 ID=MS.gene052615.t1.exon2;Parent=MS.gene052615.t1
chr3.1 CDS 61912883 61912953 61912883 ID=cds.MS.gene052615.t1;Parent=MS.gene052615.t1
chr3.1 exon 61912645 61912803 61912645 ID=MS.gene052615.t1.exon3;Parent=MS.gene052615.t1
chr3.1 CDS 61912645 61912803 61912645 ID=cds.MS.gene052615.t1;Parent=MS.gene052615.t1
chr3.1 exon 61912158 61912224 61912158 ID=MS.gene052615.t1.exon4;Parent=MS.gene052615.t1
chr3.1 CDS 61912158 61912224 61912158 ID=cds.MS.gene052615.t1;Parent=MS.gene052615.t1
chr3.1 exon 61911883 61911978 61911883 ID=MS.gene052615.t1.exon5;Parent=MS.gene052615.t1
chr3.1 CDS 61911883 61911978 61911883 ID=cds.MS.gene052615.t1;Parent=MS.gene052615.t1
chr3.1 exon 61911661 61911707 61911661 ID=MS.gene052615.t1.exon6;Parent=MS.gene052615.t1
chr3.1 CDS 61911661 61911707 61911661 ID=cds.MS.gene052615.t1;Parent=MS.gene052615.t1
chr3.1 exon 61911286 61911366 61911286 ID=MS.gene052615.t1.exon7;Parent=MS.gene052615.t1
chr3.1 CDS 61911286 61911366 61911286 ID=cds.MS.gene052615.t1;Parent=MS.gene052615.t1
chr3.1 exon 61910999 61911122 61910999 ID=MS.gene052615.t1.exon8;Parent=MS.gene052615.t1
chr3.1 CDS 61910999 61911122 61910999 ID=cds.MS.gene052615.t1;Parent=MS.gene052615.t1
Gene Sequence

>MS.gene052615

ATGGCCATGGCATCAACAAATAGCATCATCTCCATTTCCTCTGCTTCATTGTTGAATCGAACTCATCAACCAAAAACAACAACACTTATAAGCCTCCTTAAGCACAACAAGAAGGATCATGAACAACACAGTAATTCAACATCCTCTTTCACTGTCAAAGCTCTTAAGATATCAACTTCAACAGCCAGAAGGCGTAGGTTGAGTTGCTCAGCCTCGGCTTCGGCATCTTCTACGCTTCCCTCAGCTCTTCTTTTTGACTGTGATGGAGTCCTTGTAGATACTGAAAAAGATGGTCACCGCATTTCTTTCAATGATACCTTCCAAGAGGTGCCTCATGCTTTTTAATCTTTGTTTTTTCTTTTTCATAAGTAAATATTACTAGTACTTCTTAGTGTGATTATTACTATTTTTAATAGAAGTCATTGATAAGATAAAAGTATAGAAAAGTAAAACTAAAACTATATTGAAAATGAGAGAGAGAATCGTTGATTACATTGAGGGTACAACAAGACTTATATAGCCGATGAAAACAACAAACTAGTTTAGTTAACTAACTAGTGTAACTAATACATCTTTTCACCAAAAAAAAAAAACATTTTACATCTAACGTTAGTAATCAAGTTTGAATCCTATAACATCTTTATACTGGCTCAACCACCAGAGCGGCGCCTTGGAAACGATTATTAGTGTTTGGTGGTATGCAATCAAATGTAGTACGTGAACTAAGATCCTTTTAACCATAACAAGTGTGTCTGTTGTTGAGTTGTGCAGAAAGAACTAGGCGTTACCTGGGACGTGGAATTGTACGGTGAATTGCTCAAAATTGGAGGTGGAAAAGAAAGGTAAGTTGTAATTCAAATACATACAACTTTTTTCATTCTTGTTTTGAATTTGCAGCTACAATTGATGTGTTTATTGTAGGATGACAGCGTACTTTAACAAGACAGGCTGGCCTGCGAATGCACCGACCGGTGAACAAGAAAGAAAAGATTTCATAGCTTCACTTCACAAGCGAAAGACAGAACTATTCATGGAACTTGTTGAGAAAAAACTGTTGCCTCTTCGCCCAGGTGTTGCAAAGTTGGTTACTATCTGTTCTTTATCTTACATCCATACTCATTATTTATAATGTTTTTTGTTAAACATGTAAATAAATTCATTTATTGGGTGTCACCTAATGGCTTGAGTTTTCGATTCTATTCTTCATGATTTAATTTAGTTTCGAAACAGCTAGGAGAAGTTGATACTTACCAATTTAAGTTAACATTCAAAACATGAAACGCTAGAGAAGTTAATTACCTGCTAAGTAGTTGGTTTATAACATGTGGAAATATCCCTTAATAGGCTAATATTATTTATGTTATGATGTTGTTTTGATTTTTGATCTAATTTTCATGTTATGTTTTGCAACATTAACTAAAAAGAGCTGTTTCTTTTATATCAGGACACACGAACTCTGTGCCTTATCTTATTATGTGTATCTTTCTTTCAAACATACAGGCTTGTCGATCAGGCTTTAACTCAAGGAGTCAACGTTGCAGTTTGCAGCACTTCCAATGAGAAGGCGGTATGTATAATCACTTACACAATTTCCTTAAATGAATTTTTCCAACTACAGGGAAAAACGGCCCATTTTATAGAATCAATTCCTATTAGTTACTTGTGTGTACTTTATTCATAACTGCAATATCGGTTCTGTATTTATTTGTATTCCATCTCAGGACCTAAGTCATGAGTTGATTTCAGGTCTCTGCAATAGTATCATGTTTACTGGGACCTGAGCGAGCAGCGAAAATCCAGATATTTGCAGGAGACGTGGTTCCCCGAAAAAAGCCTGATCCAGTAAGATTTTCATCATTGCAATGCTAATTTTTTAGATTTTCAGGACACAATATATGTTTATATGCAGTCTCATTTTATACACTACAGTTAAACAATGGAGCCTTTTTTACTATATGATTGAATGTTCAGTATGGTATGATCTATGTGGCTAACTGTGTTATGCTCTTTGTGACAGGCCATCTATATACTAGCTGCAAGCACTCTCGGTGTTGAACCTTCGAGGTATCTCATAATAGTCATGCCTAACTAGTATATGGAGTACTAATCATGAAAAGTCAATTGTCAAACACTTTAAATTACACAAGACATTGGAAAAGTTAATGGTTCAAAACGATTATATGCCAAATGTATCCATCATAAAATCAAATGTTGTATCAAACCTATCCAGCAACTGTAGAATTGTATGGCGTTTATTTGAACCAAAATTTTAGAGCAAGTTATTATCAATTACTAGTTATTTGTTTTTGAACTGTATGGAGTGTGCAACTTTTGAATGTGAAATATTGTTATTTACAGATGTGTCGTGGTCGAGGACAGTGCAATAGGTCTAGCAGCAGCTAAAGCAGCTGGGATGAAGTGTATAGTAACAAAGAGCGGGTATATTTCTATTTACTAAATGGAAAGCAGCTCTATGTAATTTTTTTTCATAGGCAGAGATGATAGTAAGTTAGTGGTTATGTTAGTTTTTGGGATCGAATTCGGGATCTCATACTAACTCCTTCAATGTGATTTCATTCTTGATCTCAAATGTATCATGCAGGTATACAGCAGATGAAGATTTCTTAAATGCAGATGCTGTATTTGACTTCATTGGTGATCCTCCTGAGGAGAGATTTGATTTGGCATTTTGTGGTAGCCTTCTTGAGAAGCAATATGTCAGCTAG

Protein sequence

>MS.gene052615.t1

MAMASTNSIISISSASLLNRTHQPKTTTLISLLKHNKKDHEQHSNSTSSFTVKALKISTSTARRRRLSCSASASASSTLPSALLFDCDGVLVDTEKDGHRISFNDTFQEKELGVTWDVELYGELLKIGGGKERMTAYFNKTGWPANAPTGEQERKDFIASLHKRKTELFMELVEKKLLPLRPGVAKLVDQALTQGVNVAVCSTSNEKAVSAIVSCLLGPERAAKIQIFAGDVVPRKKPDPAIYILAASTLGVEPSRCVVVEDSAIGLAAAKAAGMKCIVTKSGYTADEDFLNADAVFDFIGDPPEERFDLAFCGSLLEKQYVS