Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83298.t1 | XP_013442974.1 | 96.6 | 233 | 7 | 1 | 1 | 233 | 1 | 232 | 5.30E-118 | 433.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83298.t1 | A0A072THH5 | 96.6 | 233 | 7 | 1 | 1 | 233 | 1 | 232 | 3.8e-118 | 433.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053494 | MS.gene83298 | 0.819033 | 1.44E-52 | -1.69E-46 |
| MS.gene054183 | MS.gene83298 | 0.809927 | 1.49E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene83298 | 0.828171 | 1.04E-54 | -1.69E-46 |
| MS.gene059609 | MS.gene83298 | 0.838963 | 2.10E-57 | -1.69E-46 |
| MS.gene061114 | MS.gene83298 | -0.802846 | 4.62E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83298.t1 | MTR_0054s0080 | 96.567 | 233 | 7 | 1 | 1 | 233 | 1 | 232 | 3.12e-165 | 455 |
| MS.gene83298.t1 | MTR_1g077210 | 73.418 | 237 | 59 | 2 | 1 | 233 | 1 | 237 | 8.43e-130 | 366 |
| MS.gene83298.t1 | MTR_3g109280 | 73.636 | 220 | 58 | 0 | 1 | 220 | 1 | 220 | 4.25e-118 | 336 |
| MS.gene83298.t1 | MTR_1g009030 | 65.236 | 233 | 65 | 3 | 1 | 233 | 1 | 217 | 4.79e-107 | 308 |
| MS.gene83298.t1 | MTR_6g066040 | 60.550 | 218 | 86 | 0 | 1 | 218 | 1 | 218 | 7.01e-97 | 282 |
| MS.gene83298.t1 | MTR_6g066090 | 57.241 | 145 | 62 | 0 | 74 | 218 | 1 | 145 | 1.35e-53 | 170 |
| MS.gene83298.t1 | MTR_5g068640 | 35.586 | 222 | 136 | 2 | 8 | 223 | 6 | 226 | 5.11e-45 | 151 |
| MS.gene83298.t1 | MTR_8g106520 | 36.493 | 211 | 119 | 3 | 8 | 213 | 6 | 206 | 2.89e-37 | 130 |
| MS.gene83298.t1 | MTR_7g073370 | 35.885 | 209 | 131 | 1 | 7 | 215 | 6 | 211 | 5.29e-30 | 111 |
| MS.gene83298.t1 | MTR_8g106530 | 32.850 | 207 | 134 | 1 | 7 | 213 | 6 | 207 | 3.04e-27 | 108 |
| MS.gene83298.t1 | MTR_8g106530 | 31.847 | 157 | 101 | 2 | 57 | 213 | 312 | 462 | 8.79e-14 | 70.5 |
| MS.gene83298.t1 | MTR_2g014820 | 33.333 | 213 | 136 | 4 | 1 | 212 | 644 | 851 | 6.42e-26 | 105 |
| MS.gene83298.t1 | MTR_8g106520 | 33.962 | 159 | 90 | 3 | 60 | 213 | 2 | 150 | 1.27e-21 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83298.t1 | AT4G31330 | 64.384 | 219 | 72 | 1 | 1 | 213 | 1 | 219 | 2.36e-102 | 296 |
| MS.gene83298.t1 | AT5G10580 | 60.987 | 223 | 79 | 1 | 1 | 215 | 1 | 223 | 4.98e-97 | 283 |
| MS.gene83298.t1 | AT5G10580 | 60.987 | 223 | 79 | 1 | 1 | 215 | 1 | 223 | 7.44e-97 | 283 |
| MS.gene83298.t1 | AT5G10580 | 60.987 | 223 | 79 | 1 | 1 | 215 | 1 | 223 | 7.44e-97 | 283 |
| MS.gene83298.t1 | AT5G10580 | 59.459 | 185 | 67 | 1 | 1 | 177 | 1 | 185 | 2.81e-78 | 234 |
| MS.gene83298.t1 | AT5G24790 | 52.361 | 233 | 106 | 1 | 1 | 228 | 1 | 233 | 1.57e-76 | 231 |
| MS.gene83298.t1 | AT5G24600 | 34.454 | 238 | 135 | 5 | 4 | 222 | 2 | 237 | 2.43e-39 | 136 |
| MS.gene83298.t1 | AT5G24600 | 35.294 | 221 | 123 | 4 | 4 | 206 | 2 | 220 | 3.12e-38 | 133 |
| MS.gene83298.t1 | AT3G18215 | 34.597 | 211 | 138 | 0 | 3 | 213 | 2 | 212 | 1.32e-37 | 132 |
| MS.gene83298.t1 | AT5G43180 | 32.727 | 220 | 133 | 2 | 9 | 213 | 8 | 227 | 1.23e-30 | 113 |
| MS.gene83298.t1 | AT5G46060 | 32.701 | 211 | 138 | 2 | 4 | 213 | 6 | 213 | 2.47e-17 | 78.6 |
| MS.gene83298.t1 | AT3G18215 | 32.143 | 140 | 95 | 0 | 74 | 213 | 1 | 140 | 5.60e-17 | 76.3 |
Find 44 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTGCTCACGGCGAATTTA+TGG | 0.128774 | 6.1:-62876211 | MS.gene83298:CDS |
| ATGCTCATGCTAGACGATTT+TGG | 0.136780 | 6.1:-62878804 | MS.gene83298:CDS |
| GGAATGGAAGACATATTATT+TGG | 0.196486 | 6.1:-62878929 | MS.gene83298:CDS |
| ATTCCAATTGTAGTTGAAAA+AGG | 0.214511 | 6.1:+62878829 | None:intergenic |
| CATCTTGTGGTGTGCATATA+AGG | 0.236309 | 6.1:+62876097 | None:intergenic |
| AAGTCTTCGAAACCTTATAA+TGG | 0.287193 | 6.1:-62876337 | MS.gene83298:CDS |
| CTTTGAACACTGTGGGGAAT+AGG | 0.316144 | 6.1:-62876020 | MS.gene83298:CDS |
| TTAGGGTTTCTGATGACTAT+TGG | 0.325997 | 6.1:-62878889 | MS.gene83298:CDS |
| TCTGCCACAGTCTTTCAATT+AGG | 0.330602 | 6.1:-62876140 | MS.gene83298:CDS |
| GATATGATGCTTGTACCATT+AGG | 0.338920 | 6.1:-62878907 | MS.gene83298:CDS |
| ATATGATGCTTGTACCATTA+GGG | 0.359675 | 6.1:-62878906 | MS.gene83298:CDS |
| TATAATGGGATCGACACTTA+TGG | 0.380623 | 6.1:-62876322 | MS.gene83298:CDS |
| TGCATATAAGGAGGCTTAGT+TGG | 0.387979 | 6.1:+62876109 | None:intergenic |
| CTTGACATTGTTTGTGGGAG+TGG | 0.388423 | 6.1:-62875904 | MS.gene83298:CDS |
| ACCACAAGATGTTATTTCCT+TGG | 0.397532 | 6.1:-62876085 | MS.gene83298:CDS |
| TAAGTGTCGATCCCATTATA+AGG | 0.397897 | 6.1:+62876325 | None:intergenic |
| AAAATCAGAGTCAAATAATC+AGG | 0.400332 | 6.1:+62876057 | None:intergenic |
| TTGGATATTTGGTCCAGTCT+TGG | 0.409834 | 6.1:-62875968 | MS.gene83298:CDS |
| AGTCTTCGAAACCTTATAAT+GGG | 0.413024 | 6.1:-62876336 | MS.gene83298:CDS |
| CCAAATATCCAAAGCAAAAG+TGG | 0.434862 | 6.1:+62875979 | None:intergenic |
| TGACTATTGGTTATCATGTA+TGG | 0.440284 | 6.1:-62878876 | MS.gene83298:CDS |
| TTGGGTTCCTACCATGTTGA+AGG | 0.462529 | 6.1:-62878785 | MS.gene83298:intron |
| TACAACCTTGACATTGTTTG+TGG | 0.466707 | 6.1:-62875910 | MS.gene83298:CDS |
| ACATCAATTCTCTTATCAGC+TGG | 0.497240 | 6.1:-62876294 | MS.gene83298:CDS |
| ACAACCTTGACATTGTTTGT+GGG | 0.513934 | 6.1:-62875909 | MS.gene83298:CDS |
| CCTCTTGACGACGTTCTCTA+CGG | 0.522521 | 6.1:-62876231 | MS.gene83298:CDS |
| GAGCACAATAAAACCAAGAC+TGG | 0.525087 | 6.1:+62875955 | None:intergenic |
| ATAGTCATCAGAAACCCTAA+TGG | 0.529052 | 6.1:+62878892 | None:intergenic |
| GGAACTACTTTGAACACTGT+GGG | 0.559223 | 6.1:-62876027 | MS.gene83298:CDS |
| GACGTTCTCTACGGTGCTCA+CGG | 0.584859 | 6.1:-62876222 | MS.gene83298:CDS |
| CCGTAGAGAACGTCGTCAAG+AGG | 0.592029 | 6.1:+62876231 | None:intergenic |
| TTGGTTATCATGTATGGTTG+TGG | 0.598003 | 6.1:-62878870 | MS.gene83298:CDS |
| CACTCCCACAAACAATGTCA+AGG | 0.598937 | 6.1:+62875905 | None:intergenic |
| ACCAAGGAAATAACATCTTG+TGG | 0.601619 | 6.1:+62876084 | None:intergenic |
| TCAATTACCTTCAACATGGT+AGG | 0.612368 | 6.1:+62878778 | None:intergenic |
| ATAAGTACTGCTTATGATAG+CGG | 0.623565 | 6.1:+62876266 | None:intergenic |
| TGATAAGAGAATTGATGTAG+TGG | 0.631774 | 6.1:+62876299 | None:intergenic |
| TATGGTTGTGGCATAAGACT+CGG | 0.641131 | 6.1:-62878858 | MS.gene83298:CDS |
| GAAACCTAATTGAAAGACTG+TGG | 0.655096 | 6.1:+62876136 | None:intergenic |
| CAAATAATCAGGAGTCACCA+AGG | 0.660598 | 6.1:+62876068 | None:intergenic |
| CTTGTGGTGTGCATATAAGG+AGG | 0.664841 | 6.1:+62876100 | None:intergenic |
| AGGAACTACTTTGAACACTG+TGG | 0.685779 | 6.1:-62876028 | MS.gene83298:CDS |
| GAACTACTTTGAACACTGTG+GGG | 0.711042 | 6.1:-62876026 | MS.gene83298:CDS |
| GTATTCAATTACCTTCAACA+TGG | 0.711102 | 6.1:+62878774 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTATAATATTTAATAATTG+AGG | + | chr6.1:62876230-62876249 | None:intergenic | 10.0% |
| !!! | AAATTTGAAATATGAAAAAT+AGG | - | chr6.1:62876985-62877004 | MS.gene83298:intron | 10.0% |
| !!! | AATTTATTTTATTATGAACA+GGG | - | chr6.1:62878128-62878147 | MS.gene83298:intron | 10.0% |
| !!! | AATTTGAAATATGAAAAATA+GGG | - | chr6.1:62876986-62877005 | MS.gene83298:intron | 10.0% |
| !!! | ATTAACATTTATTTTTCTAT+CGG | + | chr6.1:62877563-62877582 | None:intergenic | 10.0% |
| !!! | CTTTAAAATAAAAAAGAAAA+AGG | - | chr6.1:62877740-62877759 | MS.gene83298:intron | 10.0% |
| !!! | TAAGTTTATATTGTTTTATT+TGG | - | chr6.1:62876911-62876930 | MS.gene83298:intron | 10.0% |
| !! | AAAATAAAATTGGAGAAATT+TGG | + | chr6.1:62878205-62878224 | None:intergenic | 15.0% |
| !! | AATAATAAATGAAAGATTCA+GGG | + | chr6.1:62876138-62876157 | None:intergenic | 15.0% |
| !!! | AAATTTTCAAATTCACAAAT+TGG | + | chr6.1:62877042-62877061 | None:intergenic | 15.0% |
| !!! | ATTTACCTTTTTAAATAAAG+TGG | + | chr6.1:62878094-62878113 | None:intergenic | 15.0% |
| !!! | ATTTCTAAATTTTTACACAT+TGG | + | chr6.1:62877103-62877122 | None:intergenic | 15.0% |
| !!! | CCAATTTTTCAAAATTTATA+GGG | - | chr6.1:62877076-62877095 | MS.gene83298:intron | 15.0% |
| !!! | GAATTTATTTTATTATGAAC+AGG | - | chr6.1:62878127-62878146 | MS.gene83298:intron | 15.0% |
| !!! | TATTTTAGAGATTGAAATTT+CGG | + | chr6.1:62876676-62876695 | None:intergenic | 15.0% |
| !!! | TATTTTTATGTAAACCTATA+GGG | - | chr6.1:62878311-62878330 | MS.gene83298:intron | 15.0% |
| !!! | TCCAATTTTTCAAAATTTAT+AGG | - | chr6.1:62877075-62877094 | MS.gene83298:intron | 15.0% |
| !!! | TGTATAAACTCTAAAAAAAT+CGG | + | chr6.1:62876582-62876601 | None:intergenic | 15.0% |
| !!! | TGTGAATTTGAAAATTTTAA+AGG | - | chr6.1:62877045-62877064 | MS.gene83298:intron | 15.0% |
| !!! | TTTACCTTTTTAAATAAAGT+GGG | + | chr6.1:62878093-62878112 | None:intergenic | 15.0% |
| !!! | TTTTTTAATAAATTATGGTG+TGG | - | chr6.1:62876706-62876725 | MS.gene83298:intron | 15.0% |
| !!! | TTTTTTTAGAGTTTATACAT+AGG | - | chr6.1:62876583-62876602 | MS.gene83298:intron | 15.0% |
| !! | ACTATGAAAAATAAGGATAA+AGG | + | chr6.1:62876080-62876099 | None:intergenic | 20.0% |
| !! | CTATGAAAAATAAGGATAAA+GGG | + | chr6.1:62876079-62876098 | None:intergenic | 20.0% |
| !! | GAAAAATGAGAATAAGAATA+TGG | + | chr6.1:62878631-62878650 | None:intergenic | 20.0% |
| !! | GAATAATAAATGAAAGATTC+AGG | + | chr6.1:62876139-62876158 | None:intergenic | 20.0% |
| !! | GGTGATTAATATTATTCATT+TGG | + | chr6.1:62876323-62876342 | None:intergenic | 20.0% |
| !! | TATTTAATAATTGAGGACTA+AGG | + | chr6.1:62876223-62876242 | None:intergenic | 20.0% |
| !! | TTATTAGATGAAATCAATGT+AGG | - | chr6.1:62877482-62877501 | MS.gene83298:intron | 20.0% |
| !!! | AAAATGATTTTCACATAAAG+TGG | - | chr6.1:62877517-62877536 | MS.gene83298:intron | 20.0% |
| !!! | AATTACATTTAGAGTGTTTT+TGG | - | chr6.1:62876785-62876804 | MS.gene83298:intron | 20.0% |
| !!! | CAACTTTTTTTCATTATGTA+AGG | + | chr6.1:62878285-62878304 | None:intergenic | 20.0% |
| !!! | CCCTATAAATTTTGAAAAAT+TGG | + | chr6.1:62877079-62877098 | None:intergenic | 20.0% |
| !!! | CTATTTTTATGTAAACCTAT+AGG | - | chr6.1:62878310-62878329 | MS.gene83298:intron | 20.0% |
| !!! | GAGTATACAATTTTAAAGAT+TGG | + | chr6.1:62876511-62876530 | None:intergenic | 20.0% |
| !!! | GATGTATAATTGGAAATTTT+AGG | - | chr6.1:62876807-62876826 | MS.gene83298:intron | 20.0% |
| !!! | TGTTTTGACTATGAAAAATA+AGG | + | chr6.1:62876087-62876106 | None:intergenic | 20.0% |
| !!! | TTACTACAATTGATAATAGT+TGG | - | chr6.1:62878234-62878253 | MS.gene83298:intron | 20.0% |
| !!! | TTATGTCATTTTCTTTTTCT+TGG | + | chr6.1:62877971-62877990 | None:intergenic | 20.0% |
| !!! | TTGAAAAAATGAGAAGTATA+TGG | + | chr6.1:62876283-62876302 | None:intergenic | 20.0% |
| ! | AAAATCAGAGTCAAATAATC+AGG | + | chr6.1:62878735-62878754 | None:intergenic | 25.0% |
| ! | AATTTGATTATTAGACCTGA+AGG | + | chr6.1:62876769-62876788 | None:intergenic | 25.0% |
| ! | AGTTGGATTTAAAAAACTTG+AGG | - | chr6.1:62878251-62878270 | MS.gene83298:intron | 25.0% |
| ! | ATAAAATTGGAGAAATTTGG+AGG | + | chr6.1:62878202-62878221 | None:intergenic | 25.0% |
| ! | ATTCCAATTGTAGTTGAAAA+AGG | + | chr6.1:62875963-62875982 | None:intergenic | 25.0% |
| ! | CAAATCATTATGTCAAATTC+AGG | - | chr6.1:62878398-62878417 | MS.gene83298:intron | 25.0% |
| ! | TGAGAGAATCTACAAATAAT+TGG | - | chr6.1:62877620-62877639 | MS.gene83298:intron | 25.0% |
| ! | TGTAATTAAACATCACTCAA+GGG | + | chr6.1:62878070-62878089 | None:intergenic | 25.0% |
| ! | TTAGGAAACTAGAATTCAAA+AGG | - | chr6.1:62876825-62876844 | MS.gene83298:intron | 25.0% |
| !! | ATTATTCATTTGGTGAAAGT+TGG | + | chr6.1:62876313-62876332 | None:intergenic | 25.0% |
| !! | GCAATATCATATTTTGCAAA+CGG | + | chr6.1:62877692-62877711 | None:intergenic | 25.0% |
| !! | GTCCATTCTTAATTTTTGTT+GGG | - | chr6.1:62876950-62876969 | MS.gene83298:intron | 25.0% |
| !! | TACACCCACTTTATTTAAAA+AGG | - | chr6.1:62878086-62878105 | MS.gene83298:intron | 25.0% |
| !! | TACTCTTACGATTGAAATTT+TGG | - | chr6.1:62876526-62876545 | MS.gene83298:intron | 25.0% |
| !! | TGTCCATTCTTAATTTTTGT+TGG | - | chr6.1:62876949-62876968 | MS.gene83298:intron | 25.0% |
| !!! | AGTCAAAACATATTTTTCGA+TGG | - | chr6.1:62876097-62876116 | MS.gene83298:CDS | 25.0% |
| !!! | AGTGTTTTTGGATGTATAAT+TGG | - | chr6.1:62876797-62876816 | MS.gene83298:intron | 25.0% |
| !!! | ATTCAACAAGTCACTTTTTT+TGG | + | chr6.1:62877272-62877291 | None:intergenic | 25.0% |
| !!! | CTAGAAACAAAGTTTTAATG+TGG | - | chr6.1:62876470-62876489 | MS.gene83298:intron | 25.0% |
| AAAAATAAGGATAAAGGGCA+AGG | + | chr6.1:62876074-62876093 | None:intergenic | 30.0% | |
| AAGTATATGGACAGAAAAGT+TGG | + | chr6.1:62876270-62876289 | None:intergenic | 30.0% | |
| AAGTCTTCGAAACCTTATAA+TGG | - | chr6.1:62878452-62878471 | MS.gene83298:intron | 30.0% | |
| AATGAGACTCTACACTTAAT+GGG | + | chr6.1:62877410-62877429 | None:intergenic | 30.0% | |
| AGAAAAAGGTGAGTAGAATA+TGG | - | chr6.1:62877754-62877773 | MS.gene83298:intron | 30.0% | |
| AGAAGTAGAGTCATATTCTA+CGG | + | chr6.1:62877919-62877938 | None:intergenic | 30.0% | |
| AGACTTTGTTAGATTCAGAT+AGG | - | chr6.1:62876401-62876420 | MS.gene83298:intron | 30.0% | |
| AGCCCAACAAAAATTAAGAA+TGG | + | chr6.1:62876955-62876974 | None:intergenic | 30.0% | |
| AGTCTTCGAAACCTTATAAT+GGG | - | chr6.1:62878453-62878472 | MS.gene83298:intron | 30.0% | |
| ATATGATGCTTGTACCATTA+GGG | - | chr6.1:62875883-62875902 | MS.gene83298:CDS | 30.0% | |
| GGAATGGAAGACATATTATT+TGG | - | chr6.1:62875860-62875879 | MS.gene83298:CDS | 30.0% | |
| GTAATTAAACATCACTCAAG+GGG | + | chr6.1:62878069-62878088 | None:intergenic | 30.0% | |
| GTATTCAATTACCTTCAACA+TGG | + | chr6.1:62876018-62876037 | None:intergenic | 30.0% | |
| GTGTAATTAAACATCACTCA+AGG | + | chr6.1:62878071-62878090 | None:intergenic | 30.0% | |
| TAATGAGACTCTACACTTAA+TGG | + | chr6.1:62877411-62877430 | None:intergenic | 30.0% | |
| TACAAATAATTGGATTCCCT+AGG | - | chr6.1:62877630-62877649 | MS.gene83298:intron | 30.0% | |
| TGATAAGAGAATTGATGTAG+TGG | + | chr6.1:62878493-62878512 | None:intergenic | 30.0% | |
| ! | ATAAGTACTGCTTATGATAG+CGG | + | chr6.1:62878526-62878545 | None:intergenic | 30.0% |
| ! | TGACTATTGGTTATCATGTA+TGG | - | chr6.1:62875913-62875932 | MS.gene83298:CDS | 30.0% |
| !! | CAAAACATATTTTTCGATGG+TGG | - | chr6.1:62876100-62876119 | MS.gene83298:CDS | 30.0% |
| AATTGAGGACTAAGGAGTTT+AGG | + | chr6.1:62876215-62876234 | None:intergenic | 35.0% | |
| ACAACCTTGACATTGTTTGT+GGG | - | chr6.1:62878880-62878899 | MS.gene83298:CDS | 35.0% | |
| ACATCAATTCTCTTATCAGC+TGG | - | chr6.1:62878495-62878514 | MS.gene83298:intron | 35.0% | |
| ACCAAGGAAATAACATCTTG+TGG | + | chr6.1:62878708-62878727 | None:intergenic | 35.0% | |
| ACCTTTGACCACAATAATGT+AGG | - | chr6.1:62877665-62877684 | MS.gene83298:intron | 35.0% | |
| ACTCGTGAACTTAATTCAGT+TGG | + | chr6.1:62876172-62876191 | None:intergenic | 35.0% | |
| ATAGTCATCAGAAACCCTAA+TGG | + | chr6.1:62875900-62875919 | None:intergenic | 35.0% | |
| CCAAATATCCAAAGCAAAAG+TGG | + | chr6.1:62878813-62878832 | None:intergenic | 35.0% | |
| CCTTTGACCACAATAATGTA+GGG | - | chr6.1:62877666-62877685 | MS.gene83298:intron | 35.0% | |
| GAAACCTAATTGAAAGACTG+TGG | + | chr6.1:62878656-62878675 | None:intergenic | 35.0% | |
| GATATGATGCTTGTACCATT+AGG | - | chr6.1:62875882-62875901 | MS.gene83298:CDS | 35.0% | |
| GGAAAGCAAAATCAAAGAGT+TGG | + | chr6.1:62876344-62876363 | None:intergenic | 35.0% | |
| GTCTTCATTGACGAATTAAC+AGG | + | chr6.1:62876385-62876404 | None:intergenic | 35.0% | |
| GTTGCTAACTTGATTAGAGA+TGG | + | chr6.1:62876633-62876652 | None:intergenic | 35.0% | |
| TACAACCTTGACATTGTTTG+TGG | - | chr6.1:62878879-62878898 | MS.gene83298:CDS | 35.0% | |
| TAGAATATGGACTCCACTAA+TGG | - | chr6.1:62877767-62877786 | MS.gene83298:intron | 35.0% | |
| TCAATTACCTTCAACATGGT+AGG | + | chr6.1:62876014-62876033 | None:intergenic | 35.0% | |
| TGTAAACCTATAGGGTACAA+TGG | - | chr6.1:62878319-62878338 | MS.gene83298:intron | 35.0% | |
| TTAGGGTTTCTGATGACTAT+TGG | - | chr6.1:62875900-62875919 | MS.gene83298:CDS | 35.0% | |
| TTCATTGACGAATTAACAGG+TGG | + | chr6.1:62876382-62876401 | None:intergenic | 35.0% | |
| TTCTATCGGATGAAATTACG+TGG | + | chr6.1:62877549-62877568 | None:intergenic | 35.0% | |
| TTGGTTATCATGTATGGTTG+TGG | - | chr6.1:62875919-62875938 | MS.gene83298:CDS | 35.0% | |
| ! | ACCCTCTTTTTGAATGAAAG+TGG | + | chr6.1:62877714-62877733 | None:intergenic | 35.0% |
| ! | GCCACTTTCATTCAAAAAGA+GGG | - | chr6.1:62877710-62877729 | MS.gene83298:intron | 35.0% |
| ! | TATAATGGGATCGACACTTA+TGG | - | chr6.1:62878467-62878486 | MS.gene83298:intron | 35.0% |
| !! | ACACTTAATGGGTTATGCTA+TGG | + | chr6.1:62877399-62877418 | None:intergenic | 35.0% |
| !! | ACCACAAGATGTTATTTCCT+TGG | - | chr6.1:62878704-62878723 | MS.gene83298:intron | 35.0% |
| !! | CCACTTTTGCTTTGGATATT+TGG | - | chr6.1:62878810-62878829 | MS.gene83298:CDS | 35.0% |
| !! | TAAGTGTCGATCCCATTATA+AGG | + | chr6.1:62878467-62878486 | None:intergenic | 35.0% |
| !! | TGCCACTTTCATTCAAAAAG+AGG | - | chr6.1:62877709-62877728 | MS.gene83298:intron | 35.0% |
| !! | TTGACTCTGATTTTAGAGAG+AGG | - | chr6.1:62878741-62878760 | MS.gene83298:intron | 35.0% |
| !!! | CTTGGTTTTATTGTGCTCTT+TGG | - | chr6.1:62878839-62878858 | MS.gene83298:CDS | 35.0% |
| !!! | GAGCCTTTTTCAACTACAAT+TGG | - | chr6.1:62875957-62875976 | MS.gene83298:CDS | 35.0% |
| AACCTATGTAAGTCTTGGTG+TGG | + | chr6.1:62876738-62876757 | None:intergenic | 40.0% | |
| AAGATTCAGGGTTCAAACTC+CGG | + | chr6.1:62876126-62876145 | None:intergenic | 40.0% | |
| AGGAACTACTTTGAACACTG+TGG | - | chr6.1:62878761-62878780 | MS.gene83298:intron | 40.0% | |
| ATACTTCAGTGCCATAGCAA+TGG | + | chr6.1:62877893-62877912 | None:intergenic | 40.0% | |
| ATTATTAGACCTGAAGGCAG+GGG | + | chr6.1:62876763-62876782 | None:intergenic | 40.0% | |
| CAAATAATCAGGAGTCACCA+AGG | + | chr6.1:62878724-62878743 | None:intergenic | 40.0% | |
| CATCTTGTGGTGTGCATATA+AGG | + | chr6.1:62878695-62878714 | None:intergenic | 40.0% | |
| CCCTACATTATTGTGGTCAA+AGG | + | chr6.1:62877669-62877688 | None:intergenic | 40.0% | |
| GAACTACTTTGAACACTGTG+GGG | - | chr6.1:62878763-62878782 | MS.gene83298:intron | 40.0% | |
| GAGCACAATAAAACCAAGAC+TGG | + | chr6.1:62878837-62878856 | None:intergenic | 40.0% | |
| GATTATTAGACCTGAAGGCA+GGG | + | chr6.1:62876764-62876783 | None:intergenic | 40.0% | |
| GGAACTACTTTGAACACTGT+GGG | - | chr6.1:62878762-62878781 | MS.gene83298:intron | 40.0% | |
| GGATATAGTGACCGAAATGT+CGG | + | chr6.1:62876612-62876631 | None:intergenic | 40.0% | |
| TATGGTTGTGGCATAAGACT+CGG | - | chr6.1:62875931-62875950 | MS.gene83298:CDS | 40.0% | |
| TCTGCCACAGTCTTTCAATT+AGG | - | chr6.1:62878649-62878668 | MS.gene83298:intron | 40.0% | |
| TGATTATTAGACCTGAAGGC+AGG | + | chr6.1:62876765-62876784 | None:intergenic | 40.0% | |
| TGCATATAAGGAGGCTTAGT+TGG | + | chr6.1:62878683-62878702 | None:intergenic | 40.0% | |
| TTGGATATTTGGTCCAGTCT+TGG | - | chr6.1:62878821-62878840 | MS.gene83298:CDS | 40.0% | |
| ! | ATGCTCATGCTAGACGATTT+TGG | - | chr6.1:62875985-62876004 | MS.gene83298:CDS | 40.0% |
| ! | TGCTCATGCTAGACGATTTT+GGG | - | chr6.1:62875986-62876005 | MS.gene83298:CDS | 40.0% |
| !! | ACATATTTTTCGATGGTGGC+CGG | - | chr6.1:62876104-62876123 | MS.gene83298:CDS | 40.0% |
| !! | ATGCAATGGTATGGTGTCAT+TGG | + | chr6.1:62877795-62877814 | None:intergenic | 40.0% |
| !! | GTTAACGAGAGTGCTAGAAA+GGG | + | chr6.1:62877447-62877466 | None:intergenic | 40.0% |
| !! | TGTTAACGAGAGTGCTAGAA+AGG | + | chr6.1:62877448-62877467 | None:intergenic | 40.0% |
| AGCCACACCAAGACTTACAT+AGG | - | chr6.1:62876733-62876752 | MS.gene83298:intron | 45.0% | |
| AGGTACCAAAGCAAAGCCTA+GGG | + | chr6.1:62877649-62877668 | None:intergenic | 45.0% | |
| CAAACGGCCCTACATTATTG+TGG | + | chr6.1:62877676-62877695 | None:intergenic | 45.0% | |
| CACACATCCCCATACATCAA+CGG | - | chr6.1:62877838-62877857 | MS.gene83298:intron | 45.0% | |
| CACTCCCACAAACAATGTCA+AGG | + | chr6.1:62878887-62878906 | None:intergenic | 45.0% | |
| CCATTGCCATTGTACCCTAT+AGG | + | chr6.1:62878328-62878347 | None:intergenic | 45.0% | |
| CCTATAGGGTACAATGGCAA+TGG | - | chr6.1:62878325-62878344 | MS.gene83298:intron | 45.0% | |
| CTTGACATTGTTTGTGGGAG+TGG | - | chr6.1:62878885-62878904 | MS.gene83298:CDS | 45.0% | |
| CTTGTGGTGTGCATATAAGG+AGG | + | chr6.1:62878692-62878711 | None:intergenic | 45.0% | |
| CTTTGAACACTGTGGGGAAT+AGG | - | chr6.1:62878769-62878788 | MS.gene83298:intron | 45.0% | |
| GGGCAAACCTATGTAAGTCT+TGG | + | chr6.1:62876743-62876762 | None:intergenic | 45.0% | |
| TACATAGGCGACCGACATTT+CGG | - | chr6.1:62876598-62876617 | MS.gene83298:intron | 45.0% | |
| TTGGGTTCCTACCATGTTGA+AGG | - | chr6.1:62876004-62876023 | MS.gene83298:CDS | 45.0% | |
| TTTCTAGATCCGTCTCTGTC+TGG | + | chr6.1:62876457-62876476 | None:intergenic | 45.0% | |
| ! | AAGGTACCAAAGCAAAGCCT+AGG | + | chr6.1:62877650-62877669 | None:intergenic | 45.0% |
| ! | ACGACAGCTTTTGTCGTGTA+AGG | + | chr6.1:62877307-62877326 | None:intergenic | 45.0% |
| !! | CTGCTCTTCCACTTTTGCTT+TGG | - | chr6.1:62878802-62878821 | MS.gene83298:CDS | 45.0% |
| !! | ATATAGAAATAAAATAAAAT+TGG | + | chr6.1:62878215-62878234 | None:intergenic | 5.0% |
| !!! | TTCTATTTTTTAATAAATTA+TGG | - | chr6.1:62876701-62876720 | MS.gene83298:intron | 5.0% |
| AATCAGCCTCCAGACAGAGA+CGG | - | chr6.1:62876445-62876464 | MS.gene83298:intron | 50.0% | |
| AGCACGACTCACACACAACA+AGG | - | chr6.1:62877199-62877218 | MS.gene83298:intron | 50.0% | |
| AGTCCTGGCCGTTGATGTAT+GGG | + | chr6.1:62877849-62877868 | None:intergenic | 50.0% | |
| CACCAATGGCACCATTGCTA+TGG | - | chr6.1:62877879-62877898 | MS.gene83298:intron | 50.0% | |
| CCTCTTGACGACGTTCTCTA+CGG | - | chr6.1:62878558-62878577 | MS.gene83298:intron | 50.0% | |
| GGATTCCCTAGGCTTTGCTT+TGG | - | chr6.1:62877641-62877660 | MS.gene83298:intron | 50.0% | |
| GTGTGTGTGATGTGTGTGTG+TGG | + | chr6.1:62877823-62877842 | None:intergenic | 50.0% | |
| TCTCTGTCTGGAGGCTGATT+AGG | + | chr6.1:62876445-62876464 | None:intergenic | 50.0% | |
| TGTGTGATGTGTGTGTGTGG+TGG | + | chr6.1:62877820-62877839 | None:intergenic | 50.0% | |
| ! | AGGTGGAGTAGCTTGAGTTG+TGG | + | chr6.1:62876365-62876384 | None:intergenic | 50.0% |
| ! | GTGGTGGAGATGCAATGGTA+TGG | + | chr6.1:62877804-62877823 | None:intergenic | 50.0% |
| ! | TGTGTGTGGTGGAGATGCAA+TGG | + | chr6.1:62877809-62877828 | None:intergenic | 50.0% |
| !! | GACTGGTTCTATGGCACCAA+TGG | - | chr6.1:62877865-62877884 | MS.gene83298:intron | 50.0% |
| !! | GGTGTCATTGGTGCCATTAG+TGG | + | chr6.1:62877783-62877802 | None:intergenic | 50.0% |
| !! | TGCCATAGCAATGGTGCCAT+TGG | + | chr6.1:62877884-62877903 | None:intergenic | 50.0% |
| ATAGGTTTGCCCCTGCCTTC+AGG | - | chr6.1:62876751-62876770 | MS.gene83298:intron | 55.0% | |
| ATCCCCATACATCAACGGCC+AGG | - | chr6.1:62877843-62877862 | MS.gene83298:intron | 55.0% | |
| CAGTCCTGGCCGTTGATGTA+TGG | + | chr6.1:62877850-62877869 | None:intergenic | 55.0% | |
| CATACATCAACGGCCAGGAC+TGG | - | chr6.1:62877848-62877867 | MS.gene83298:intron | 55.0% | |
| CCGTAGAGAACGTCGTCAAG+AGG | + | chr6.1:62878561-62878580 | None:intergenic | 55.0% | |
| CGGTGCTCACGGCGAATTTA+TGG | - | chr6.1:62878578-62878597 | MS.gene83298:intron | 55.0% | |
| CTAGATCCGTCTCTGTCTGG+AGG | + | chr6.1:62876454-62876473 | None:intergenic | 55.0% | |
| GACGTTCTCTACGGTGCTCA+CGG | - | chr6.1:62878567-62878586 | MS.gene83298:intron | 55.0% | |
| GTCCTGGCCGTTGATGTATG+GGG | + | chr6.1:62877848-62877867 | None:intergenic | 55.0% | |
| !! | AACGGCCAGGACTGGTTCTA+TGG | - | chr6.1:62877856-62877875 | MS.gene83298:intron | 55.0% |
| !! | TGGTGCCATAGAACCAGTCC+TGG | + | chr6.1:62877864-62877883 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 62875858 | 62878953 | 62875858 | ID=MS.gene83298 |
| chr6.1 | mRNA | 62875858 | 62878953 | 62875858 | ID=MS.gene83298.t1;Parent=MS.gene83298 |
| chr6.1 | exon | 62878786 | 62878953 | 62878786 | ID=MS.gene83298.t1.exon1;Parent=MS.gene83298.t1 |
| chr6.1 | CDS | 62878786 | 62878953 | 62878786 | ID=cds.MS.gene83298.t1;Parent=MS.gene83298.t1 |
| chr6.1 | exon | 62875858 | 62876391 | 62875858 | ID=MS.gene83298.t1.exon2;Parent=MS.gene83298.t1 |
| chr6.1 | CDS | 62875858 | 62876391 | 62875858 | ID=cds.MS.gene83298.t1;Parent=MS.gene83298.t1 |
| Gene Sequence |
| Protein sequence |
