Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83388.t1 | XP_003629034.1 | 97.6 | 170 | 4 | 0 | 5 | 174 | 113 | 282 | 8.10E-95 | 356.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83388.t1 | Q9ZV87 | 65.3 | 170 | 54 | 3 | 5 | 169 | 113 | 282 | 4.7e-59 | 228.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83388.t1 | G7L7V8 | 97.6 | 170 | 4 | 0 | 5 | 174 | 113 | 282 | 5.8e-95 | 356.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056583 | MS.gene83388 | 0.956051 | 7.32E-114 | -1.69E-46 |
| MS.gene056618 | MS.gene83388 | 0.811799 | 5.84E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83388.t1 | MTR_8g072400 | 97.647 | 170 | 4 | 0 | 5 | 174 | 113 | 282 | 1.26e-124 | 352 |
| MS.gene83388.t1 | MTR_7g112680 | 41.121 | 107 | 56 | 3 | 7 | 112 | 193 | 293 | 1.37e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83388.t1 | AT1G78690 | 64.535 | 172 | 56 | 3 | 5 | 171 | 38 | 209 | 2.26e-75 | 224 |
| MS.gene83388.t1 | AT1G78690 | 64.535 | 172 | 56 | 3 | 5 | 171 | 38 | 209 | 2.26e-75 | 224 |
| MS.gene83388.t1 | AT1G78690 | 64.535 | 172 | 56 | 3 | 5 | 171 | 113 | 284 | 7.64e-75 | 226 |
| MS.gene83388.t1 | AT1G78690 | 64.535 | 172 | 56 | 3 | 5 | 171 | 113 | 284 | 7.64e-75 | 226 |
| MS.gene83388.t1 | AT1G78690 | 84.416 | 77 | 12 | 0 | 5 | 81 | 113 | 189 | 2.55e-43 | 143 |
| MS.gene83388.t1 | AT3G05510 | 37.795 | 127 | 72 | 2 | 7 | 132 | 100 | 220 | 1.01e-20 | 87.8 |
| MS.gene83388.t1 | AT3G05510 | 37.795 | 127 | 72 | 2 | 7 | 132 | 190 | 310 | 1.76e-20 | 87.8 |
Find 48 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGATTAACATAATTAT+TGG | 0.205505 | 8.4:-31789835 | MS.gene83388:CDS |
| ATCCAAACCATCGGAAGTTT+TGG | 0.236147 | 8.4:+31789726 | None:intergenic |
| TCCCCATTTCAATCGCCTTA+TGG | 0.245711 | 8.4:+31791044 | None:intergenic |
| CCCCATTTCAATCGCCTTAT+GGG | 0.322930 | 8.4:+31791045 | None:intergenic |
| GTGTTGCCATGGAGAAATTA+AGG | 0.335963 | 8.4:-31789657 | MS.gene83388:CDS |
| TTAATCTTCTTATTGCATAA+TGG | 0.350456 | 8.4:+31789847 | None:intergenic |
| GCCCAAAACTTCCGATGGTT+TGG | 0.352965 | 8.4:-31789728 | MS.gene83388:CDS |
| GGCAATACAATCGGAGTTAT+AGG | 0.380006 | 8.4:+31790997 | None:intergenic |
| GCTGGAAGGTCAAATTCAAT+TGG | 0.397107 | 8.4:+31789808 | None:intergenic |
| CACCCATAAGGCGATTGAAA+TGG | 0.400448 | 8.4:-31791047 | MS.gene83388:CDS |
| ATGGAGAAATTAAGGTGTTA+TGG | 0.405553 | 8.4:-31789649 | MS.gene83388:CDS |
| TGAAAACCATGATGAACAAT+TGG | 0.407703 | 8.4:+31790976 | None:intergenic |
| ACCCATAAGGCGATTGAAAT+GGG | 0.410412 | 8.4:-31791046 | MS.gene83388:CDS |
| ATAGCCATTTCACTCATTGC+TGG | 0.413100 | 8.4:+31789790 | None:intergenic |
| TCTAAAATGGTAACATTCAC+AGG | 0.423087 | 8.4:-31792822 | None:intergenic |
| GGAATGAATCATTCCGAGAC+TGG | 0.443898 | 8.4:+31789764 | None:intergenic |
| CTACCAAACATATATTTCTC+TGG | 0.451010 | 8.4:+31789883 | None:intergenic |
| AATGATTCATTCCCTGCTAT+CGG | 0.460627 | 8.4:-31789754 | MS.gene83388:CDS |
| CCTTCCAGCAATGAGTGAAA+TGG | 0.466140 | 8.4:-31789794 | MS.gene83388:CDS |
| GGCGCTTAAATGATGGAGAA+TGG | 0.466287 | 8.4:-31792737 | MS.gene83388:CDS |
| ATGCCAGAGAAATATATGTT+TGG | 0.471220 | 8.4:-31789886 | MS.gene83388:CDS |
| TTCTTATTGCATAATGGTAA+AGG | 0.476447 | 8.4:+31789853 | None:intergenic |
| TGCATACCTATTACAAGAGG+TGG | 0.488641 | 8.4:-31792795 | MS.gene83388:CDS |
| GTATTGCCAATTGTTCATCA+TGG | 0.490395 | 8.4:-31790982 | MS.gene83388:CDS |
| AGCACATGAATGAAGCGCTT+GGG | 0.493733 | 8.4:-31792758 | MS.gene83388:CDS |
| GAGCACATGAATGAAGCGCT+TGG | 0.502704 | 8.4:-31792759 | MS.gene83388:CDS |
| ATGATTCATTCCCTGCTATC+GGG | 0.503118 | 8.4:-31789753 | MS.gene83388:CDS |
| TGAACAATTGGCAATACAAT+CGG | 0.512162 | 8.4:+31790988 | None:intergenic |
| GCGCTTGGGCGCTTAAATGA+TGG | 0.515254 | 8.4:-31792744 | MS.gene83388:CDS |
| ATCAAGACGATGCACCCATA+AGG | 0.516940 | 8.4:-31791059 | MS.gene83388:CDS |
| AGAGAAAATTCGTGTTGCCA+TGG | 0.524956 | 8.4:-31789668 | MS.gene83388:CDS |
| AACTTCCGATGGTTTGGATG+AGG | 0.529543 | 8.4:-31789722 | MS.gene83388:CDS |
| GCGCTTAAATGATGGAGAAT+GGG | 0.543995 | 8.4:-31792736 | MS.gene83388:intron |
| TGCTGCCTCATCCAAACCAT+CGG | 0.562631 | 8.4:+31789717 | None:intergenic |
| GCATACCTATTACAAGAGGT+GGG | 0.571063 | 8.4:-31792794 | MS.gene83388:CDS |
| AAATGGCTATTGCCCAGTCT+CGG | 0.571200 | 8.4:-31789777 | MS.gene83388:CDS |
| ATAACACCTTAATTTCTCCA+TGG | 0.579558 | 8.4:+31789651 | None:intergenic |
| CCATTTCACTCATTGCTGGA+AGG | 0.590388 | 8.4:+31789794 | None:intergenic |
| ATACCTATTACAAGAGGTGG+GGG | 0.590840 | 8.4:-31792792 | MS.gene83388:CDS |
| GAATGAATCATTCCGAGACT+GGG | 0.595529 | 8.4:+31789765 | None:intergenic |
| GGGTGGCCCAAAACTTCCGA+TGG | 0.612018 | 8.4:-31789733 | MS.gene83388:CDS |
| CATACCTATTACAAGAGGTG+GGG | 0.616369 | 8.4:-31792793 | MS.gene83388:CDS |
| TTATTGCATAATGGTAAAGG+AGG | 0.636529 | 8.4:+31789856 | None:intergenic |
| ATTCATTCCCTGCTATCGGG+TGG | 0.650574 | 8.4:-31789750 | MS.gene83388:CDS |
| CCCATAAGGCGATTGAAATG+GGG | 0.650823 | 8.4:-31791045 | MS.gene83388:CDS |
| CAATCGGAGTTATAGGTGCA+CGG | 0.652808 | 8.4:+31791004 | None:intergenic |
| AAATGCATACCTATTACAAG+AGG | 0.660468 | 8.4:-31792798 | MS.gene83388:CDS |
| TACCTATTACAAGAGGTGGG+GGG | 0.737152 | 8.4:-31792791 | MS.gene83388:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTCAAATAAAAAAAAAT+AGG | + | chr8.4:31790925-31790944 | None:intergenic | 10.0% |
| !! | AAGAAGATTAACATAATTAT+TGG | - | chr8.4:31792608-31792627 | MS.gene83388:intron | 15.0% |
| !!! | ATTTCATTTTCACAAATAAT+AGG | + | chr8.4:31790596-31790615 | None:intergenic | 15.0% |
| !!! | ATTTTAATAAACTTACATTC+TGG | - | chr8.4:31790626-31790645 | MS.gene83388:intron | 15.0% |
| !! | AGAACAAAAGCTATAAAAAT+TGG | - | chr8.4:31790983-31791002 | MS.gene83388:CDS | 20.0% |
| !! | AGAACATAATACAAGAAATA+TGG | + | chr8.4:31792333-31792352 | None:intergenic | 20.0% |
| !! | AGAATTCTCAAAGAAAAAAT+TGG | + | chr8.4:31790183-31790202 | None:intergenic | 20.0% |
| !! | AGATTGTTTACCAAATAAAA+AGG | + | chr8.4:31790428-31790447 | None:intergenic | 20.0% |
| !! | ATAATGAGAATGAATATTCA+GGG | - | chr8.4:31790079-31790098 | MS.gene83388:intron | 20.0% |
| !! | ATTAAGCGATAAAAAAAATC+TGG | + | chr8.4:31790724-31790743 | None:intergenic | 20.0% |
| !! | TAATAACCAATAAAACAGAA+GGG | + | chr8.4:31790895-31790914 | None:intergenic | 20.0% |
| !! | TATAAATTTGTCGTAACAAA+AGG | - | chr8.4:31791922-31791941 | MS.gene83388:intron | 20.0% |
| !! | TATAATGAGAATGAATATTC+AGG | - | chr8.4:31790078-31790097 | MS.gene83388:intron | 20.0% |
| !! | TATTATCTTAATCTTCTGAT+TGG | + | chr8.4:31792063-31792082 | None:intergenic | 20.0% |
| !! | TTAATCTTCTTATTGCATAA+TGG | + | chr8.4:31792599-31792618 | None:intergenic | 20.0% |
| !!! | ATTTTGCATCATGAATTTAT+AGG | + | chr8.4:31791707-31791726 | None:intergenic | 20.0% |
| !!! | TTTCCTTGCTTTTTATATTT+GGG | - | chr8.4:31791086-31791105 | MS.gene83388:CDS | 20.0% |
| ! | AACAAGAATCATAAGAGTAA+TGG | + | chr8.4:31792376-31792395 | None:intergenic | 25.0% |
| ! | AAGCATTAAGAAAAAGATCA+TGG | + | chr8.4:31791875-31791894 | None:intergenic | 25.0% |
| ! | ATATATCTTAAGCATACGAT+TGG | - | chr8.4:31792172-31792191 | MS.gene83388:intron | 25.0% |
| ! | CCAAATAATTAGAAAATGAC+AGG | + | chr8.4:31791819-31791838 | None:intergenic | 25.0% |
| ! | CTAATAACCAATAAAACAGA+AGG | + | chr8.4:31790896-31790915 | None:intergenic | 25.0% |
| ! | TAATGAGAATGAATATTCAG+GGG | - | chr8.4:31790080-31790099 | MS.gene83388:intron | 25.0% |
| ! | TGTGATTCATATTTAGAAAC+TGG | - | chr8.4:31792280-31792299 | MS.gene83388:intron | 25.0% |
| ! | TTCTTATTGCATAATGGTAA+AGG | + | chr8.4:31792593-31792612 | None:intergenic | 25.0% |
| !! | AATAGAAGTATAGGATAAAC+AGG | - | chr8.4:31790854-31790873 | MS.gene83388:intron | 25.0% |
| !! | AATTTCTGCTTATGTTTTCT+AGG | - | chr8.4:31792532-31792551 | MS.gene83388:intron | 25.0% |
| !! | ACTCTTTTACGATGATAATT+TGG | - | chr8.4:31789774-31789793 | MS.gene83388:CDS | 25.0% |
| !! | ATTCTCATTATAACACCTTT+TGG | + | chr8.4:31790070-31790089 | None:intergenic | 25.0% |
| !! | CTCTTTTACGATGATAATTT+GGG | - | chr8.4:31789775-31789794 | MS.gene83388:CDS | 25.0% |
| !! | GAATTTAGTTGTTAGACTTT+TGG | - | chr8.4:31791616-31791635 | MS.gene83388:intron | 25.0% |
| !!! | AACTTTGTATCTTTTAGTTC+TGG | + | chr8.4:31791209-31791228 | None:intergenic | 25.0% |
| !!! | ATTGTCTACTCTGAAATATT+GGG | - | chr8.4:31790808-31790827 | MS.gene83388:intron | 25.0% |
| !!! | ATTTTATTTGCATGACCATT+GGG | - | chr8.4:31790943-31790962 | MS.gene83388:intron | 25.0% |
| !!! | CCTGTCATTTTCTAATTATT+TGG | - | chr8.4:31791816-31791835 | MS.gene83388:intron | 25.0% |
| !!! | CTTTCCTTGCTTTTTATATT+TGG | - | chr8.4:31791085-31791104 | MS.gene83388:CDS | 25.0% |
| !!! | TATTGTCTACTCTGAAATAT+TGG | - | chr8.4:31790807-31790826 | MS.gene83388:intron | 25.0% |
| !!! | TATTTTATTTGCATGACCAT+TGG | - | chr8.4:31790942-31790961 | MS.gene83388:intron | 25.0% |
| !!! | TCTTGTTTTTGATGCATTTA+TGG | - | chr8.4:31790280-31790299 | MS.gene83388:intron | 25.0% |
| !!! | TGTTGGTTTTCCTTTTTATT+TGG | - | chr8.4:31790415-31790434 | MS.gene83388:intron | 25.0% |
| AAAAAAATCTGGTGAAGTTG+AGG | + | chr8.4:31790713-31790732 | None:intergenic | 30.0% | |
| AAATGACAGGACATATATCA+AGG | + | chr8.4:31791806-31791825 | None:intergenic | 30.0% | |
| AAATGCATACCTATTACAAG+AGG | - | chr8.4:31789645-31789664 | MS.gene83388:CDS | 30.0% | |
| AGTGCTACAAATGGTATATA+AGG | + | chr8.4:31791548-31791567 | None:intergenic | 30.0% | |
| ATAACACCTTAATTTCTCCA+TGG | + | chr8.4:31792795-31792814 | None:intergenic | 30.0% | |
| ATGAGATACTTGCATAGTAA+CGG | + | chr8.4:31792422-31792441 | None:intergenic | 30.0% | |
| ATGCCAGAGAAATATATGTT+TGG | - | chr8.4:31792557-31792576 | MS.gene83388:intron | 30.0% | |
| CAGAGAAAAAAAGTCTAGTA+CGG | + | chr8.4:31792228-31792247 | None:intergenic | 30.0% | |
| CTACCAAACATATATTTCTC+TGG | + | chr8.4:31792563-31792582 | None:intergenic | 30.0% | |
| CTACTTGTGAGAATTATTGA+AGG | - | chr8.4:31791999-31792018 | MS.gene83388:intron | 30.0% | |
| CTTTCGTAAAGAGAAAATTG+TGG | - | chr8.4:31790498-31790517 | MS.gene83388:intron | 30.0% | |
| TATAGGATAAACAGGTTTGT+GGG | - | chr8.4:31790862-31790881 | MS.gene83388:intron | 30.0% | |
| TGAAAACCATGATGAACAAT+TGG | + | chr8.4:31791470-31791489 | None:intergenic | 30.0% | |
| TGAACAATTGGCAATACAAT+CGG | + | chr8.4:31791458-31791477 | None:intergenic | 30.0% | |
| TTATTGCATAATGGTAAAGG+AGG | + | chr8.4:31792590-31792609 | None:intergenic | 30.0% | |
| ! | ATCAGCAGTATTTTCTTACA+AGG | - | chr8.4:31791663-31791682 | MS.gene83388:intron | 30.0% |
| ! | ATGGAGAAATTAAGGTGTTA+TGG | - | chr8.4:31792794-31792813 | MS.gene83388:CDS | 30.0% |
| ! | CAAGCAGTTAATAGAAGTAT+AGG | - | chr8.4:31790845-31790864 | MS.gene83388:intron | 30.0% |
| !! | ATAAGATTGCGTTGATTTCA+TGG | - | chr8.4:31791006-31791025 | MS.gene83388:CDS | 30.0% |
| !! | TAAGATTGCGTTGATTTCAT+GGG | - | chr8.4:31791007-31791026 | MS.gene83388:CDS | 30.0% |
| !! | TAATTTCGTTATGCTGATTC+TGG | - | chr8.4:31792498-31792517 | MS.gene83388:intron | 30.0% |
| !! | TCAATTAGAAGTGCTACAAA+TGG | + | chr8.4:31791557-31791576 | None:intergenic | 30.0% |
| !! | TTTTCTCGGTTGATGTTAAA+TGG | - | chr8.4:31789864-31789883 | MS.gene83388:CDS | 30.0% |
| !!! | AGTTGTTAGACTTTTGGAAT+TGG | - | chr8.4:31791622-31791641 | MS.gene83388:intron | 30.0% |
| !!! | TTATTGTCCTTGCTTTTTCT+CGG | - | chr8.4:31789850-31789869 | MS.gene83388:CDS | 30.0% |
| AAAACTCTTAGCGATACTAG+AGG | + | chr8.4:31789831-31789850 | None:intergenic | 35.0% | |
| AAACTCTTAGCGATACTAGA+GGG | + | chr8.4:31789830-31789849 | None:intergenic | 35.0% | |
| AAATGGAAAGTTCTCTGAAC+TGG | - | chr8.4:31791285-31791304 | MS.gene83388:intron | 35.0% | |
| AATGATTCATTCCCTGCTAT+CGG | - | chr8.4:31792689-31792708 | MS.gene83388:intron | 35.0% | |
| ACTCAATTGTGGAAAGTTGA+TGG | + | chr8.4:31791045-31791064 | None:intergenic | 35.0% | |
| AGAATATGAGATGATCCTAG+AGG | - | chr8.4:31789924-31789943 | MS.gene83388:intron | 35.0% | |
| AGTTCAGAGAACTTTCCATT+TGG | + | chr8.4:31791286-31791305 | None:intergenic | 35.0% | |
| ATACTTGCATAGTAACGGTT+AGG | + | chr8.4:31792417-31792436 | None:intergenic | 35.0% | |
| ATCAATTGTCAAACACCCAA+TGG | + | chr8.4:31790961-31790980 | None:intergenic | 35.0% | |
| CATTAAGACAATTGCAGATC+CGG | + | chr8.4:31792256-31792275 | None:intergenic | 35.0% | |
| CTCTTTCCTCTAATACCTTT+GGG | - | chr8.4:31791510-31791529 | MS.gene83388:intron | 35.0% | |
| GATTTCATGGGTAAATTCAG+AGG | - | chr8.4:31791019-31791038 | MS.gene83388:CDS | 35.0% | |
| GCTGCTTATCTTGAAAATGT+GGG | - | chr8.4:31790648-31790667 | MS.gene83388:intron | 35.0% | |
| GTAAAAGAGTTATGCTTGTG+TGG | + | chr8.4:31789764-31789783 | None:intergenic | 35.0% | |
| GTATAGGATAAACAGGTTTG+TGG | - | chr8.4:31790861-31790880 | MS.gene83388:intron | 35.0% | |
| GTATTGCCAATTGTTCATCA+TGG | - | chr8.4:31791461-31791480 | MS.gene83388:intron | 35.0% | |
| GTGCCCAAATATAAAAAGCA+AGG | + | chr8.4:31791092-31791111 | None:intergenic | 35.0% | |
| GTTCAGAGAACTTTCCATTT+GGG | + | chr8.4:31791285-31791304 | None:intergenic | 35.0% | |
| TAATGCTTGCTTTCTTCTCA+AGG | - | chr8.4:31791887-31791906 | MS.gene83388:intron | 35.0% | |
| TAGTAATGAGCATGTATCGA+TGG | - | chr8.4:31791740-31791759 | MS.gene83388:intron | 35.0% | |
| TCTTTCCTCTAATACCTTTG+GGG | - | chr8.4:31791511-31791530 | MS.gene83388:intron | 35.0% | |
| TGCAAGAGATTAGAGATCAA+AGG | - | chr8.4:31791972-31791991 | MS.gene83388:intron | 35.0% | |
| TTCAGAGAACTTTCCATTTG+GGG | + | chr8.4:31791284-31791303 | None:intergenic | 35.0% | |
| TTGTTATCCATGGCAGAAAA+TGG | + | chr8.4:31790232-31790251 | None:intergenic | 35.0% | |
| ! | AATCTTTCTTGTGTGTCACT+GGG | - | chr8.4:31790443-31790462 | MS.gene83388:intron | 35.0% |
| ! | CTGATTGGTCATTGTTCAAT+GGG | + | chr8.4:31792048-31792067 | None:intergenic | 35.0% |
| ! | GATGCATTTATGGACTGAAT+TGG | - | chr8.4:31790290-31790309 | MS.gene83388:intron | 35.0% |
| ! | GTATGTCCCTTCTGTTTTAT+TGG | - | chr8.4:31790886-31790905 | MS.gene83388:intron | 35.0% |
| ! | TATTTGGGCACACTATTTTC+TGG | - | chr8.4:31791101-31791120 | MS.gene83388:intron | 35.0% |
| ! | TCTAGGATCATCTCATATTC+TGG | + | chr8.4:31789925-31789944 | None:intergenic | 35.0% |
| ! | TCTGATTGGTCATTGTTCAA+TGG | + | chr8.4:31792049-31792068 | None:intergenic | 35.0% |
| ! | TCTTGATGAACTTTTCCTTC+TGG | + | chr8.4:31791371-31791390 | None:intergenic | 35.0% |
| ! | TGTACTCCTCTATTACGTTT+TGG | - | chr8.4:31791129-31791148 | MS.gene83388:intron | 35.0% |
| ! | TGTTCATCATGGTTTTCATG+AGG | - | chr8.4:31791472-31791491 | MS.gene83388:intron | 35.0% |
| !! | AATCACTCGTAGCTTTGATT+TGG | + | chr8.4:31790145-31790164 | None:intergenic | 35.0% |
| !! | ACTCTGAAATATTGGGTGAT+TGG | - | chr8.4:31790815-31790834 | MS.gene83388:intron | 35.0% |
| !! | CAGTTAAAGCTTGTTATCCA+TGG | + | chr8.4:31790242-31790261 | None:intergenic | 35.0% |
| !!! | ACTTTTTTTCTCTGCATGAC+CGG | - | chr8.4:31792234-31792253 | MS.gene83388:intron | 35.0% |
| AAAGAGTTATGCTTGTGTGG+AGG | + | chr8.4:31789761-31789780 | None:intergenic | 40.0% | |
| AAGAGTTATGCTTGTGTGGA+GGG | + | chr8.4:31789760-31789779 | None:intergenic | 40.0% | |
| ACATCAACCGAGAAAAAGCA+AGG | + | chr8.4:31789860-31789879 | None:intergenic | 40.0% | |
| ACCCATAAGGCGATTGAAAT+GGG | - | chr8.4:31791397-31791416 | MS.gene83388:intron | 40.0% | |
| AGAGAAAATTCGTGTTGCCA+TGG | - | chr8.4:31792775-31792794 | MS.gene83388:CDS | 40.0% | |
| ATACCTATTACAAGAGGTGG+GGG | - | chr8.4:31789651-31789670 | MS.gene83388:CDS | 40.0% | |
| ATAGCCATTTCACTCATTGC+TGG | + | chr8.4:31792656-31792675 | None:intergenic | 40.0% | |
| ATCTCCATAGAAGTTGCACA+CGG | + | chr8.4:31791166-31791185 | None:intergenic | 40.0% | |
| ATGATTCATTCCCTGCTATC+GGG | - | chr8.4:31792690-31792709 | MS.gene83388:intron | 40.0% | |
| CAATCTTTCTTGTGTGTCAC+TGG | - | chr8.4:31790442-31790461 | MS.gene83388:intron | 40.0% | |
| CATACCTATTACAAGAGGTG+GGG | - | chr8.4:31789650-31789669 | MS.gene83388:CDS | 40.0% | |
| CCTCTTTCCTCTAATACCTT+TGG | - | chr8.4:31791509-31791528 | MS.gene83388:intron | 40.0% | |
| CTTACTCTGTAGCATCCAAA+AGG | - | chr8.4:31790052-31790071 | MS.gene83388:intron | 40.0% | |
| GAATGAATCATTCCGAGACT+GGG | + | chr8.4:31792681-31792700 | None:intergenic | 40.0% | |
| GCATACCTATTACAAGAGGT+GGG | - | chr8.4:31789649-31789668 | MS.gene83388:CDS | 40.0% | |
| GCTGGAAGGTCAAATTCAAT+TGG | + | chr8.4:31792638-31792657 | None:intergenic | 40.0% | |
| GGCAATACAATCGGAGTTAT+AGG | + | chr8.4:31791449-31791468 | None:intergenic | 40.0% | |
| GGCTGCTTATCTTGAAAATG+TGG | - | chr8.4:31790647-31790666 | MS.gene83388:intron | 40.0% | |
| GTAAGTAACAGACTCTCACT+AGG | + | chr8.4:31790037-31790056 | None:intergenic | 40.0% | |
| GTGTTGCCATGGAGAAATTA+AGG | - | chr8.4:31792786-31792805 | MS.gene83388:CDS | 40.0% | |
| TGAGAATGAATATTCAGGGG+AGG | - | chr8.4:31790083-31790102 | MS.gene83388:intron | 40.0% | |
| TGCATACCTATTACAAGAGG+TGG | - | chr8.4:31789648-31789667 | MS.gene83388:CDS | 40.0% | |
| TTGCTAACGAGACTCAATTG+TGG | + | chr8.4:31791056-31791075 | None:intergenic | 40.0% | |
| ! | ATCCAAACCATCGGAAGTTT+TGG | + | chr8.4:31792720-31792739 | None:intergenic | 40.0% |
| ! | GCGCTTAAATGATGGAGAAT+GGG | - | chr8.4:31789707-31789726 | MS.gene83388:CDS | 40.0% |
| ! | TCCAAACCATCGGAAGTTTT+GGG | + | chr8.4:31792719-31792738 | None:intergenic | 40.0% |
| ! | TGGTTGCTAGAGCTTTGATT+TGG | + | chr8.4:31790212-31790231 | None:intergenic | 40.0% |
| ! | TTGAGCTTGATTTGACCAAG+AGG | + | chr8.4:31790564-31790583 | None:intergenic | 40.0% |
| !! | CCAAAGGTATTAGAGGAAAG+AGG | + | chr8.4:31791512-31791531 | None:intergenic | 40.0% |
| !! | TCCTCTATTACGTTTTGGCA+GGG | - | chr8.4:31791134-31791153 | MS.gene83388:intron | 40.0% |
| !! | TTGCATTTTAGTGCCCCAAA+TGG | - | chr8.4:31791268-31791287 | MS.gene83388:intron | 40.0% |
| AAATGGCTATTGCCCAGTCT+CGG | - | chr8.4:31792666-31792685 | MS.gene83388:intron | 45.0% | |
| AAGAAGCCACTGTGGTTTAG+TGG | - | chr8.4:31790527-31790546 | MS.gene83388:intron | 45.0% | |
| ACCCTGCCAAAACGTAATAG+AGG | + | chr8.4:31791138-31791157 | None:intergenic | 45.0% | |
| ACTACGAGCACAGTGCTTAT+TGG | + | chr8.4:31792202-31792221 | None:intergenic | 45.0% | |
| AGAAGCCACTGTGGTTTAGT+GGG | - | chr8.4:31790528-31790547 | MS.gene83388:intron | 45.0% | |
| AGTAGGCACCTATTGTCTCA+TGG | - | chr8.4:31789953-31789972 | MS.gene83388:intron | 45.0% | |
| ATCAAGACGATGCACCCATA+AGG | - | chr8.4:31791384-31791403 | MS.gene83388:intron | 45.0% | |
| ATCTCCGTGTGCAACTTCTA+TGG | - | chr8.4:31791159-31791178 | MS.gene83388:intron | 45.0% | |
| CAATCGGAGTTATAGGTGCA+CGG | + | chr8.4:31791442-31791461 | None:intergenic | 45.0% | |
| CACCCATAAGGCGATTGAAA+TGG | - | chr8.4:31791396-31791415 | MS.gene83388:intron | 45.0% | |
| CCATTTCACTCATTGCTGGA+AGG | + | chr8.4:31792652-31792671 | None:intergenic | 45.0% | |
| CCCATAAGGCGATTGAAATG+GGG | - | chr8.4:31791398-31791417 | MS.gene83388:intron | 45.0% | |
| CCCCATTTCAATCGCCTTAT+GGG | + | chr8.4:31791401-31791420 | None:intergenic | 45.0% | |
| CCTTCCAGCAATGAGTGAAA+TGG | - | chr8.4:31792649-31792668 | MS.gene83388:intron | 45.0% | |
| CTCATGGGTCAACACTTGAT+AGG | - | chr8.4:31789969-31789988 | MS.gene83388:intron | 45.0% | |
| GAAGAGTAGCGATGCAAAGA+AGG | - | chr8.4:31790314-31790333 | MS.gene83388:intron | 45.0% | |
| GATCCTAGAGGACAGATAGT+AGG | - | chr8.4:31789936-31789955 | MS.gene83388:intron | 45.0% | |
| GGAATGAATCATTCCGAGAC+TGG | + | chr8.4:31792682-31792701 | None:intergenic | 45.0% | |
| GGATGTAAAAGAAGCCACTG+TGG | - | chr8.4:31790519-31790538 | MS.gene83388:intron | 45.0% | |
| GGGTCAACACTTGATAGGAA+AGG | - | chr8.4:31789974-31789993 | MS.gene83388:intron | 45.0% | |
| GTAGGCACCTATTGTCTCAT+GGG | - | chr8.4:31789954-31789973 | MS.gene83388:intron | 45.0% | |
| TACCTATTACAAGAGGTGGG+GGG | - | chr8.4:31789652-31789671 | MS.gene83388:CDS | 45.0% | |
| TCCCCATTTCAATCGCCTTA+TGG | + | chr8.4:31791402-31791421 | None:intergenic | 45.0% | |
| TCTAAGAAAGTGGCCAGGAT+GGG | - | chr8.4:31790011-31790030 | MS.gene83388:intron | 45.0% | |
| TGATAGGAAAGGTCTACACG+AGG | - | chr8.4:31789985-31790004 | MS.gene83388:intron | 45.0% | |
| ! | AACTTCCGATGGTTTGGATG+AGG | - | chr8.4:31792721-31792740 | MS.gene83388:intron | 45.0% |
| ! | AGCACATGAATGAAGCGCTT+GGG | - | chr8.4:31789685-31789704 | MS.gene83388:CDS | 45.0% |
| ! | CAGCTGCATACTTTTCCAGA+AGG | - | chr8.4:31791353-31791372 | MS.gene83388:intron | 45.0% |
| ! | CTAGCAACCATTTTCTGCCA+TGG | - | chr8.4:31790222-31790241 | MS.gene83388:intron | 45.0% |
| ! | GGAAAAGTATGCAGCTGCAA+TGG | + | chr8.4:31791350-31791369 | None:intergenic | 45.0% |
| ! | GGCGCTTAAATGATGGAGAA+TGG | - | chr8.4:31789706-31789725 | MS.gene83388:CDS | 45.0% |
| ! | GTGGGAACACATTTTCCTCT+TGG | - | chr8.4:31790546-31790565 | MS.gene83388:intron | 45.0% |
| ! | GTGTTGACCCATGAGACAAT+AGG | + | chr8.4:31789964-31789983 | None:intergenic | 45.0% |
| ! | GTTTTTGCGCTGTCGTATTG+TGG | - | chr8.4:31792458-31792477 | MS.gene83388:intron | 45.0% |
| !! | CTCCTCTATTACGTTTTGGC+AGG | - | chr8.4:31791133-31791152 | MS.gene83388:intron | 45.0% |
| !! | TCGAACCCCAAAGGTATTAG+AGG | + | chr8.4:31791519-31791538 | None:intergenic | 45.0% |
| !! | TCTAATACCTTTGGGGTTCG+AGG | - | chr8.4:31791518-31791537 | MS.gene83388:intron | 45.0% |
| ATCCCCCCACCTCTTGTAAT+AGG | + | chr8.4:31789657-31789676 | None:intergenic | 50.0% | |
| ATGCTTGTGTGGAGGGAAGA+AGG | + | chr8.4:31789753-31789772 | None:intergenic | 50.0% | |
| ATTCATTCCCTGCTATCGGG+TGG | - | chr8.4:31792693-31792712 | MS.gene83388:intron | 50.0% | |
| CCAACACTGATCAAGCTTCG+TGG | + | chr8.4:31790401-31790420 | None:intergenic | 50.0% | |
| CCACGAAGCTTGATCAGTGT+TGG | - | chr8.4:31790398-31790417 | MS.gene83388:intron | 50.0% | |
| GCCCAAAACTTCCGATGGTT+TGG | - | chr8.4:31792715-31792734 | MS.gene83388:intron | 50.0% | |
| GTCTAAGAAAGTGGCCAGGA+TGG | - | chr8.4:31790010-31790029 | MS.gene83388:intron | 50.0% | |
| GTGCCTACTATCTGTCCTCT+AGG | + | chr8.4:31789942-31789961 | None:intergenic | 50.0% | |
| GTGTTCCCACTAAACCACAG+TGG | + | chr8.4:31790536-31790555 | None:intergenic | 50.0% | |
| TAGGAAAGGTCTACACGAGG+CGG | - | chr8.4:31789988-31790007 | MS.gene83388:intron | 50.0% | |
| TGCTGCCTCATCCAAACCAT+CGG | + | chr8.4:31792729-31792748 | None:intergenic | 50.0% | |
| ! | GAGCACATGAATGAAGCGCT+TGG | - | chr8.4:31789684-31789703 | MS.gene83388:CDS | 50.0% |
| AGGCAATCCTCGAACCCCAA+AGG | + | chr8.4:31791528-31791547 | None:intergenic | 55.0% | |
| CACGAGGCGGTCTAAGAAAG+TGG | - | chr8.4:31790001-31790020 | MS.gene83388:intron | 55.0% | |
| GCGCTTGGGCGCTTAAATGA+TGG | - | chr8.4:31789699-31789718 | MS.gene83388:CDS | 55.0% | |
| ! | TTTTGGGCCACCCGATAGCA+GGG | + | chr8.4:31792703-31792722 | None:intergenic | 55.0% |
| GACTCTCACTAGGCCCATCC+TGG | + | chr8.4:31790027-31790046 | None:intergenic | 60.0% | |
| GGCGGTCTAAGAAAGTGGCC+AGG | - | chr8.4:31790006-31790025 | MS.gene83388:intron | 60.0% | |
| GGGTGGCCCAAAACTTCCGA+TGG | - | chr8.4:31792710-31792729 | MS.gene83388:intron | 60.0% | |
| !! | GTTTTGGGCCACCCGATAGC+AGG | + | chr8.4:31792704-31792723 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 31789627 | 31792838 | 31789627 | ID=MS.gene83388 |
| chr8.4 | mRNA | 31789627 | 31792838 | 31789627 | ID=MS.gene83388.t1;Parent=MS.gene83388 |
| chr8.4 | exon | 31792737 | 31792838 | 31792737 | ID=MS.gene83388.t1.exon1;Parent=MS.gene83388.t1 |
| chr8.4 | CDS | 31792737 | 31792838 | 31792737 | ID=cds.MS.gene83388.t1;Parent=MS.gene83388.t1 |
| chr8.4 | exon | 31790972 | 31791109 | 31790972 | ID=MS.gene83388.t1.exon2;Parent=MS.gene83388.t1 |
| chr8.4 | CDS | 31790972 | 31791109 | 31790972 | ID=cds.MS.gene83388.t1;Parent=MS.gene83388.t1 |
| chr8.4 | exon | 31789627 | 31789911 | 31789627 | ID=MS.gene83388.t1.exon3;Parent=MS.gene83388.t1 |
| chr8.4 | CDS | 31789627 | 31789911 | 31789627 | ID=cds.MS.gene83388.t1;Parent=MS.gene83388.t1 |
| Gene Sequence |
| Protein sequence |
