Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83408.t1 | XP_003628988.1 | 98.1 | 313 | 6 | 0 | 4 | 316 | 142 | 454 | 6.50E-167 | 596.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83408.t1 | F4I9E1 | 51.7 | 315 | 118 | 6 | 4 | 317 | 137 | 418 | 2.1e-73 | 277.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83408.t1 | G7L747 | 98.1 | 313 | 6 | 0 | 4 | 316 | 142 | 454 | 4.7e-167 | 596.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056551 | MS.gene83408 | 0.95911 | 4.40E-117 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83408.t1 | MTR_8g071920 | 98.083 | 313 | 6 | 0 | 4 | 316 | 142 | 454 | 0.0 | 617 |
| MS.gene83408.t1 | MTR_5g026350 | 70.159 | 315 | 90 | 3 | 4 | 317 | 101 | 412 | 1.01e-146 | 425 |
| MS.gene83408.t1 | MTR_7g083660 | 53.822 | 314 | 129 | 3 | 4 | 313 | 101 | 402 | 9.40e-91 | 281 |
| MS.gene83408.t1 | MTR_4g073690 | 28.165 | 316 | 179 | 10 | 4 | 310 | 110 | 386 | 6.01e-28 | 112 |
| MS.gene83408.t1 | MTR_4g073690 | 28.165 | 316 | 179 | 10 | 4 | 310 | 110 | 386 | 3.55e-27 | 111 |
| MS.gene83408.t1 | MTR_5g022380 | 27.445 | 317 | 186 | 9 | 4 | 317 | 108 | 383 | 1.84e-24 | 103 |
| MS.gene83408.t1 | MTR_5g022380 | 27.597 | 308 | 179 | 9 | 13 | 317 | 7 | 273 | 2.33e-23 | 99.8 |
| MS.gene83408.t1 | MTR_3g466110 | 40.800 | 125 | 67 | 4 | 3 | 126 | 101 | 219 | 1.11e-20 | 92.8 |
| MS.gene83408.t1 | MTR_3g466110 | 44.444 | 99 | 48 | 2 | 219 | 317 | 285 | 376 | 2.36e-17 | 82.8 |
| MS.gene83408.t1 | MTR_3g466040 | 38.400 | 125 | 70 | 4 | 3 | 126 | 101 | 219 | 8.20e-19 | 87.0 |
| MS.gene83408.t1 | MTR_3g466040 | 40.000 | 110 | 63 | 2 | 208 | 317 | 271 | 377 | 7.86e-14 | 72.4 |
| MS.gene83408.t1 | MTR_4g116210 | 26.774 | 310 | 181 | 11 | 17 | 307 | 121 | 403 | 4.56e-17 | 82.0 |
| MS.gene83408.t1 | MTR_2g450710 | 24.252 | 301 | 195 | 9 | 17 | 307 | 120 | 397 | 2.58e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83408.t1 | AT4G19450 | 65.723 | 318 | 99 | 3 | 4 | 316 | 101 | 413 | 7.08e-139 | 399 |
| MS.gene83408.t1 | AT4G19450 | 65.723 | 318 | 99 | 3 | 4 | 316 | 101 | 413 | 5.88e-137 | 400 |
| MS.gene83408.t1 | AT5G45275 | 66.144 | 319 | 97 | 2 | 4 | 316 | 101 | 414 | 2.37e-132 | 388 |
| MS.gene83408.t1 | AT1G31470 | 52.063 | 315 | 117 | 6 | 4 | 317 | 137 | 418 | 1.56e-79 | 253 |
| MS.gene83408.t1 | AT3G01630 | 43.042 | 309 | 134 | 5 | 13 | 317 | 126 | 396 | 4.63e-71 | 230 |
| MS.gene83408.t1 | AT3G01630 | 43.042 | 309 | 134 | 5 | 13 | 317 | 144 | 414 | 5.91e-71 | 230 |
| MS.gene83408.t1 | AT2G30300 | 32.787 | 305 | 149 | 11 | 18 | 314 | 98 | 354 | 1.07e-32 | 126 |
| MS.gene83408.t1 | AT4G34950 | 26.032 | 315 | 203 | 8 | 4 | 310 | 111 | 403 | 7.13e-29 | 116 |
| MS.gene83408.t1 | AT2G16660 | 27.010 | 311 | 186 | 8 | 4 | 310 | 109 | 382 | 1.28e-22 | 97.4 |
| MS.gene83408.t1 | AT2G16660 | 27.010 | 311 | 186 | 8 | 4 | 310 | 109 | 382 | 4.44e-22 | 97.1 |
| MS.gene83408.t1 | AT1G80530 | 27.103 | 321 | 191 | 11 | 4 | 310 | 108 | 399 | 2.93e-16 | 79.7 |
| MS.gene83408.t1 | AT2G28120 | 23.003 | 313 | 199 | 7 | 5 | 310 | 113 | 390 | 4.53e-12 | 67.0 |
Find 88 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTGCTATGAATTCTTAT+TGG | 0.222588 | 8.4:+32245073 | None:intergenic |
| AATGCAAGTGTTCGGTTAAC+TGG | 0.257319 | 8.4:-32245180 | None:intergenic |
| ATCCTCCCATTGTTTATTCC+TGG | 0.276891 | 8.4:+32245525 | MS.gene83408:CDS |
| GGCCTTTATCTCCTCTTGTT+TGG | 0.298637 | 8.4:+32245441 | MS.gene83408:CDS |
| ATATGCTGCAGCCACTTAAA+AGG | 0.309934 | 8.4:-32245113 | None:intergenic |
| TCTTGTCTATAGCAATAATC+TGG | 0.318485 | 8.4:+32245893 | MS.gene83408:CDS |
| GCATCGTATATGCTCGGGCT+TGG | 0.337481 | 8.4:+32245547 | MS.gene83408:CDS |
| TTGTCCGCAGATTAGACTTT+TGG | 0.338323 | 8.4:+32245832 | MS.gene83408:CDS |
| TCCCTCCTGATGCAGTTAAC+CGG | 0.355666 | 8.4:+32245373 | MS.gene83408:CDS |
| TTCGGCCGCTTGCTTTCAGC+TGG | 0.355741 | 8.4:+32245990 | MS.gene83408:CDS |
| GTACCATCCATTCCAGCTTC+CGG | 0.370296 | 8.4:+32245577 | MS.gene83408:CDS |
| CATTCCAGCTTCCGGGTAGA+AGG | 0.371764 | 8.4:+32245585 | MS.gene83408:CDS |
| TACCATCCATTCCAGCTTCC+GGG | 0.374160 | 8.4:+32245578 | MS.gene83408:CDS |
| AAAGGCGGTTGGCGAAGAAT+TGG | 0.382733 | 8.4:-32245342 | None:intergenic |
| TGCTATGAATTCTTATTGGC+AGG | 0.398589 | 8.4:+32245077 | None:intergenic |
| CATCGTATATGCTCGGGCTT+GGG | 0.400293 | 8.4:+32245548 | MS.gene83408:CDS |
| CGCCACAATAGTAGTATTGT+TGG | 0.404050 | 8.4:+32245666 | MS.gene83408:CDS |
| GAGATAAAGGCCAGTGAAGA+TGG | 0.425004 | 8.4:-32245430 | None:intergenic |
| AGCCAAACAAGAGGAGATAA+AGG | 0.427912 | 8.4:-32245443 | None:intergenic |
| TCGCTCACTGTGAGTTTCAA+TGG | 0.434947 | 8.4:+32245204 | MS.gene83408:CDS |
| TGGCTCATCCGCTTCTTCCA+TGG | 0.435568 | 8.4:+32245461 | MS.gene83408:CDS |
| TCAGCCCGGCTCCACTTTGG+TGG | 0.442888 | 8.4:+32245486 | MS.gene83408:CDS |
| ATTTGCAGCAAGGGTGTAAA+GGG | 0.444742 | 8.4:-32245238 | None:intergenic |
| GCTTCAGCCCGGCTCCACTT+TGG | 0.445624 | 8.4:+32245483 | MS.gene83408:CDS |
| TTCCTGGCATCGTATATGCT+CGG | 0.446310 | 8.4:+32245541 | MS.gene83408:CDS |
| CAGTTCCACCAAAGTGGAGC+CGG | 0.456901 | 8.4:-32245491 | None:intergenic |
| TAAGTGGCTGCAGCATATGC+TGG | 0.457056 | 8.4:+32245118 | MS.gene83408:CDS |
| AACTTCTTAGCCATCTTCAC+TGG | 0.457087 | 8.4:+32245420 | MS.gene83408:CDS |
| CCGCTTGCTTTCAGCTGGAC+CGG | 0.458672 | 8.4:+32245995 | MS.gene83408:CDS |
| CTAGCATTGTCAAGTGATCC+TGG | 0.465755 | 8.4:-32245785 | None:intergenic |
| GGATCCTTCTACCCGGAAGC+TGG | 0.466179 | 8.4:-32245589 | None:intergenic |
| GAGTCCCGGTTAACTGCATC+AGG | 0.466696 | 8.4:-32245378 | None:intergenic |
| CTTCTACCCGGAAGCTGGAA+TGG | 0.469851 | 8.4:-32245584 | None:intergenic |
| ATCATGAATAAGAATAATGC+TGG | 0.479379 | 8.4:-32245610 | None:intergenic |
| GCCCGAGCATATACGATGCC+AGG | 0.480604 | 8.4:-32245543 | None:intergenic |
| TCCTGGCATCGTATATGCTC+GGG | 0.483803 | 8.4:+32245542 | MS.gene83408:CDS |
| AATTTGCAGCAAGGGTGTAA+AGG | 0.488929 | 8.4:-32245239 | None:intergenic |
| AGATACAACGAGTCAGATGA+TGG | 0.502108 | 8.4:-32245270 | None:intergenic |
| AGTATTGTTGGCAATGGAGA+TGG | 0.503210 | 8.4:+32245678 | MS.gene83408:CDS |
| AGGAGAAGAGCACTCGGCTG+CGG | 0.506141 | 8.4:+32245806 | MS.gene83408:CDS |
| GGCTGAAGCCATGGAAGAAG+CGG | 0.512684 | 8.4:-32245469 | None:intergenic |
| GAATAAACAATGGGAGGATG+AGG | 0.518506 | 8.4:-32245521 | None:intergenic |
| CTTCTTCCATGGCTTCAGCC+CGG | 0.520418 | 8.4:+32245472 | MS.gene83408:CDS |
| ATAGTGATGTGTGTTGTGAT+AGG | 0.521727 | 8.4:+32245754 | MS.gene83408:CDS |
| TACTTCTGTGGAGGTACGAT+TGG | 0.521989 | 8.4:+32245870 | MS.gene83408:CDS |
| GTCTATTGAATTTGCAGCAA+GGG | 0.523964 | 8.4:-32245247 | None:intergenic |
| CCCTCCTGATGCAGTTAACC+GGG | 0.528546 | 8.4:+32245374 | MS.gene83408:CDS |
| CGATGCCAGGAATAAACAAT+GGG | 0.529124 | 8.4:-32245530 | None:intergenic |
| AATAGTAGTATTGTTGGCAA+TGG | 0.537309 | 8.4:+32245672 | MS.gene83408:CDS |
| GTGGAGCCGGGCTGAAGCCA+TGG | 0.539100 | 8.4:-32245478 | None:intergenic |
| AGTTCCACCAAAGTGGAGCC+GGG | 0.542463 | 8.4:-32245490 | None:intergenic |
| TTGTGATAGGATGATTGGCC+AGG | 0.544085 | 8.4:+32245767 | MS.gene83408:CDS |
| GGACAGATTGCTCAATCTCT+CGG | 0.544880 | 8.4:+32245915 | MS.gene83408:CDS |
| GTGTGTTGTGATAGGATGAT+TGG | 0.550219 | 8.4:+32245762 | MS.gene83408:CDS |
| TTCCTTCTGACTTGAAAACA+TGG | 0.551570 | 8.4:-32245727 | None:intergenic |
| TACCCGGAAGCTGGAATGGA+TGG | 0.554919 | 8.4:-32245580 | None:intergenic |
| CTTGTCTATAGCAATAATCT+GGG | 0.555565 | 8.4:+32245894 | MS.gene83408:CDS |
| CAGGATCACTTGACAATGCT+AGG | 0.576806 | 8.4:+32245786 | MS.gene83408:CDS |
| TGAGCGATAATGCAAGTGTT+CGG | 0.581196 | 8.4:-32245188 | None:intergenic |
| TGCCAACAATACTACTATTG+TGG | 0.582099 | 8.4:-32245668 | None:intergenic |
| AGCCACTTAAAAGGCTCAGA+AGG | 0.583900 | 8.4:-32245104 | None:intergenic |
| ACTTACCTACGAACATAGTC+CGG | 0.585793 | 8.4:-32246014 | None:intergenic |
| TCAGGAGGGAGAGGTTCTAA+AGG | 0.592174 | 8.4:-32245360 | None:intergenic |
| GAAGAACAGTTCCACCAAAG+TGG | 0.593406 | 8.4:-32245497 | None:intergenic |
| GGATGCATAGAGAGTAACAA+GGG | 0.595972 | 8.4:-32245958 | None:intergenic |
| ACGATGCCAGGAATAAACAA+TGG | 0.598651 | 8.4:-32245531 | None:intergenic |
| TTAACTGCATCAGGAGGGAG+AGG | 0.602857 | 8.4:-32245369 | None:intergenic |
| TACTACATCACATACTTCTG+TGG | 0.603312 | 8.4:+32245858 | MS.gene83408:CDS |
| GGAGAGGTTCTAAAGGCGGT+TGG | 0.603669 | 8.4:-32245353 | None:intergenic |
| AAGCGGATGAGCCAAACAAG+AGG | 0.609834 | 8.4:-32245452 | None:intergenic |
| TCCCGGTTAACTGCATCAGG+AGG | 0.613519 | 8.4:-32245375 | None:intergenic |
| CAACAATACTACTATTGTGG+CGG | 0.618920 | 8.4:-32245665 | None:intergenic |
| CGGTTGGCGAAGAATTGGAA+TGG | 0.622452 | 8.4:-32245337 | None:intergenic |
| TACATCACATACTTCTGTGG+AGG | 0.634418 | 8.4:+32245861 | MS.gene83408:CDS |
| TGCCAGGAATAAACAATGGG+AGG | 0.638245 | 8.4:-32245527 | None:intergenic |
| CCCGGTTAACTGCATCAGGA+GGG | 0.640329 | 8.4:-32245374 | None:intergenic |
| TTAGAAATACTAGTGAGTCC+CGG | 0.641069 | 8.4:-32245392 | None:intergenic |
| CCGGTCCAGCTGAAAGCAAG+CGG | 0.646338 | 8.4:-32245995 | None:intergenic |
| TACAGTCTGCTAAGTGACAA+CGG | 0.654544 | 8.4:+32245702 | MS.gene83408:CDS |
| CTGGACCGGACTATGTTCGT+AGG | 0.661692 | 8.4:+32246009 | MS.gene83408:CDS |
| AATGCTAGGAGAAGAGCACT+CGG | 0.664079 | 8.4:+32245800 | MS.gene83408:CDS |
| GGTCTATTGAATTTGCAGCA+AGG | 0.670145 | 8.4:-32245248 | None:intergenic |
| GATACAACGAGTCAGATGAT+GGG | 0.670491 | 8.4:-32245269 | None:intergenic |
| GGAGGGAGAGGTTCTAAAGG+CGG | 0.680038 | 8.4:-32245357 | None:intergenic |
| TAATGCTGGATCCTTCTACC+CGG | 0.684138 | 8.4:-32245596 | None:intergenic |
| ATAGCCAAAAGTCTAATCTG+CGG | 0.685024 | 8.4:-32245836 | None:intergenic |
| AGGATGCATAGAGAGTAACA+AGG | 0.706911 | 8.4:-32245959 | None:intergenic |
| GAGTTTCAATGGTGTCAGTG+CGG | 0.765466 | 8.4:+32245215 | MS.gene83408:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATCATGAATAAGAATAATGC+TGG | - | chr8.4:32245613-32245632 | None:intergenic | 25.0% |
| AATAGTAGTATTGTTGGCAA+TGG | + | chr8.4:32245672-32245691 | MS.gene83408:CDS | 30.0% | |
| CTTGTCTATAGCAATAATCT+GGG | + | chr8.4:32245894-32245913 | MS.gene83408:CDS | 30.0% | |
| TCTTGTCTATAGCAATAATC+TGG | + | chr8.4:32245893-32245912 | MS.gene83408:CDS | 30.0% | |
| !! | TATGCATCCTTTTCGTTTTT+CGG | + | chr8.4:32245972-32245991 | MS.gene83408:CDS | 30.0% |
| ATAGCCAAAAGTCTAATCTG+CGG | - | chr8.4:32245839-32245858 | None:intergenic | 35.0% | |
| ATAGTGATGTGTGTTGTGAT+AGG | + | chr8.4:32245754-32245773 | MS.gene83408:CDS | 35.0% | |
| CAACAATACTACTATTGTGG+CGG | - | chr8.4:32245668-32245687 | None:intergenic | 35.0% | |
| GTCTATTGAATTTGCAGCAA+GGG | - | chr8.4:32245250-32245269 | None:intergenic | 35.0% | |
| TACTACATCACATACTTCTG+TGG | + | chr8.4:32245858-32245877 | MS.gene83408:CDS | 35.0% | |
| TGCCAACAATACTACTATTG+TGG | - | chr8.4:32245671-32245690 | None:intergenic | 35.0% | |
| TTAGAAATACTAGTGAGTCC+CGG | - | chr8.4:32245395-32245414 | None:intergenic | 35.0% | |
| ! | TTCCTTCTGACTTGAAAACA+TGG | - | chr8.4:32245730-32245749 | None:intergenic | 35.0% |
| !!! | ATCCATGTTTTCAAGTCAGA+AGG | + | chr8.4:32245725-32245744 | MS.gene83408:CDS | 35.0% |
| AACTTCTTAGCCATCTTCAC+TGG | + | chr8.4:32245420-32245439 | MS.gene83408:CDS | 40.0% | |
| AATGCAAGTGTTCGGTTAAC+TGG | - | chr8.4:32245183-32245202 | None:intergenic | 40.0% | |
| ACGATGCCAGGAATAAACAA+TGG | - | chr8.4:32245534-32245553 | None:intergenic | 40.0% | |
| AGATACAACGAGTCAGATGA+TGG | - | chr8.4:32245273-32245292 | None:intergenic | 40.0% | |
| AGCCAAACAAGAGGAGATAA+AGG | - | chr8.4:32245446-32245465 | None:intergenic | 40.0% | |
| AGGATGCATAGAGAGTAACA+AGG | - | chr8.4:32245962-32245981 | None:intergenic | 40.0% | |
| AGTATTGTTGGCAATGGAGA+TGG | + | chr8.4:32245678-32245697 | MS.gene83408:CDS | 40.0% | |
| ATATGCTGCAGCCACTTAAA+AGG | - | chr8.4:32245116-32245135 | None:intergenic | 40.0% | |
| ATCCTCCCATTGTTTATTCC+TGG | + | chr8.4:32245525-32245544 | MS.gene83408:CDS | 40.0% | |
| CGATGCCAGGAATAAACAAT+GGG | - | chr8.4:32245533-32245552 | None:intergenic | 40.0% | |
| CGCCACAATAGTAGTATTGT+TGG | + | chr8.4:32245666-32245685 | MS.gene83408:CDS | 40.0% | |
| GAATAAACAATGGGAGGATG+AGG | - | chr8.4:32245524-32245543 | None:intergenic | 40.0% | |
| GATACAACGAGTCAGATGAT+GGG | - | chr8.4:32245272-32245291 | None:intergenic | 40.0% | |
| GCTGCAATGCAAACAAAAAG+AGG | - | chr8.4:32245315-32245334 | None:intergenic | 40.0% | |
| GGATGCATAGAGAGTAACAA+GGG | - | chr8.4:32245961-32245980 | None:intergenic | 40.0% | |
| GGTCTATTGAATTTGCAGCA+AGG | - | chr8.4:32245251-32245270 | None:intergenic | 40.0% | |
| GTGTGTTGTGATAGGATGAT+TGG | + | chr8.4:32245762-32245781 | MS.gene83408:CDS | 40.0% | |
| TACAGTCTGCTAAGTGACAA+CGG | + | chr8.4:32245702-32245721 | MS.gene83408:CDS | 40.0% | |
| TACATCACATACTTCTGTGG+AGG | + | chr8.4:32245861-32245880 | MS.gene83408:CDS | 40.0% | |
| TGAGCGATAATGCAAGTGTT+CGG | - | chr8.4:32245191-32245210 | None:intergenic | 40.0% | |
| ! | AATTTGCAGCAAGGGTGTAA+AGG | - | chr8.4:32245242-32245261 | None:intergenic | 40.0% |
| ! | ATTTGCAGCAAGGGTGTAAA+GGG | - | chr8.4:32245241-32245260 | None:intergenic | 40.0% |
| ! | TTCCTTCTGAGCCTTTTAAG+TGG | + | chr8.4:32245102-32245121 | MS.gene83408:CDS | 40.0% |
| ! | TTGTCCGCAGATTAGACTTT+TGG | + | chr8.4:32245832-32245851 | MS.gene83408:CDS | 40.0% |
| AGCCACTTAAAAGGCTCAGA+AGG | - | chr8.4:32245107-32245126 | None:intergenic | 45.0% | |
| CAGGATCACTTGACAATGCT+AGG | + | chr8.4:32245786-32245805 | MS.gene83408:CDS | 45.0% | |
| CTAGCATTGTCAAGTGATCC+TGG | - | chr8.4:32245788-32245807 | None:intergenic | 45.0% | |
| GAAGAACAGTTCCACCAAAG+TGG | - | chr8.4:32245500-32245519 | None:intergenic | 45.0% | |
| GAGATAAAGGCCAGTGAAGA+TGG | - | chr8.4:32245433-32245452 | None:intergenic | 45.0% | |
| GGACAGATTGCTCAATCTCT+CGG | + | chr8.4:32245915-32245934 | MS.gene83408:CDS | 45.0% | |
| GGCCTTTATCTCCTCTTGTT+TGG | + | chr8.4:32245441-32245460 | MS.gene83408:CDS | 45.0% | |
| TAATGCTGGATCCTTCTACC+CGG | - | chr8.4:32245599-32245618 | None:intergenic | 45.0% | |
| TCGCTCACTGTGAGTTTCAA+TGG | + | chr8.4:32245204-32245223 | MS.gene83408:CDS | 45.0% | |
| TGCCAGGAATAAACAATGGG+AGG | - | chr8.4:32245530-32245549 | None:intergenic | 45.0% | |
| TTCCTGGCATCGTATATGCT+CGG | + | chr8.4:32245541-32245560 | MS.gene83408:CDS | 45.0% | |
| ! | GAGTTTCAATGGTGTCAGTG+CGG | + | chr8.4:32245215-32245234 | MS.gene83408:CDS | 45.0% |
| ! | TACTTCTGTGGAGGTACGAT+TGG | + | chr8.4:32245870-32245889 | MS.gene83408:CDS | 45.0% |
| ! | TTGTGATAGGATGATTGGCC+AGG | + | chr8.4:32245767-32245786 | MS.gene83408:CDS | 45.0% |
| !! | AATGCTAGGAGAAGAGCACT+CGG | + | chr8.4:32245800-32245819 | MS.gene83408:CDS | 45.0% |
| AAAGGCGGTTGGCGAAGAAT+TGG | - | chr8.4:32245345-32245364 | None:intergenic | 50.0% | |
| AAGCGGATGAGCCAAACAAG+AGG | - | chr8.4:32245455-32245474 | None:intergenic | 50.0% | |
| CAAGCGGCCGAAAAACGAAA+AGG | - | chr8.4:32245982-32246001 | None:intergenic | 50.0% | |
| CATCGTATATGCTCGGGCTT+GGG | + | chr8.4:32245548-32245567 | MS.gene83408:CDS | 50.0% | |
| CGGTTGGCGAAGAATTGGAA+TGG | - | chr8.4:32245340-32245359 | None:intergenic | 50.0% | |
| GTACCATCCATTCCAGCTTC+CGG | + | chr8.4:32245577-32245596 | MS.gene83408:CDS | 50.0% | |
| TAAGTGGCTGCAGCATATGC+TGG | + | chr8.4:32245118-32245137 | MS.gene83408:CDS | 50.0% | |
| TACCATCCATTCCAGCTTCC+GGG | + | chr8.4:32245578-32245597 | MS.gene83408:CDS | 50.0% | |
| TCCCTCCTGATGCAGTTAAC+CGG | + | chr8.4:32245373-32245392 | MS.gene83408:CDS | 50.0% | |
| TCCTGGCATCGTATATGCTC+GGG | + | chr8.4:32245542-32245561 | MS.gene83408:CDS | 50.0% | |
| TTAACTGCATCAGGAGGGAG+AGG | - | chr8.4:32245372-32245391 | None:intergenic | 50.0% | |
| ! | TCAGGAGGGAGAGGTTCTAA+AGG | - | chr8.4:32245363-32245382 | None:intergenic | 50.0% |
| AGTTCCACCAAAGTGGAGCC+GGG | - | chr8.4:32245493-32245512 | None:intergenic | 55.0% | |
| CAGTTCCACCAAAGTGGAGC+CGG | - | chr8.4:32245494-32245513 | None:intergenic | 55.0% | |
| CATTCCAGCTTCCGGGTAGA+AGG | + | chr8.4:32245585-32245604 | MS.gene83408:CDS | 55.0% | |
| CCCGGTTAACTGCATCAGGA+GGG | - | chr8.4:32245377-32245396 | None:intergenic | 55.0% | |
| CCCTCCTGATGCAGTTAACC+GGG | + | chr8.4:32245374-32245393 | MS.gene83408:CDS | 55.0% | |
| CTGGACCGGACTATGTTCGT+AGG | + | chr8.4:32246009-32246028 | MS.gene83408:CDS | 55.0% | |
| CTTCTACCCGGAAGCTGGAA+TGG | - | chr8.4:32245587-32245606 | None:intergenic | 55.0% | |
| CTTCTTCCATGGCTTCAGCC+CGG | + | chr8.4:32245472-32245491 | MS.gene83408:CDS | 55.0% | |
| GAGTCCCGGTTAACTGCATC+AGG | - | chr8.4:32245381-32245400 | None:intergenic | 55.0% | |
| GCATCGTATATGCTCGGGCT+TGG | + | chr8.4:32245547-32245566 | MS.gene83408:CDS | 55.0% | |
| GGCTGAAGCCATGGAAGAAG+CGG | - | chr8.4:32245472-32245491 | None:intergenic | 55.0% | |
| TACCCGGAAGCTGGAATGGA+TGG | - | chr8.4:32245583-32245602 | None:intergenic | 55.0% | |
| TCCCGGTTAACTGCATCAGG+AGG | - | chr8.4:32245378-32245397 | None:intergenic | 55.0% | |
| TGGCTCATCCGCTTCTTCCA+TGG | + | chr8.4:32245461-32245480 | MS.gene83408:CDS | 55.0% | |
| !! | GGAGAGGTTCTAAAGGCGGT+TGG | - | chr8.4:32245356-32245375 | None:intergenic | 55.0% |
| !! | GGAGGGAGAGGTTCTAAAGG+CGG | - | chr8.4:32245360-32245379 | None:intergenic | 55.0% |
| CCGCTTGCTTTCAGCTGGAC+CGG | + | chr8.4:32245995-32246014 | MS.gene83408:CDS | 60.0% | |
| CCGGTCCAGCTGAAAGCAAG+CGG | - | chr8.4:32245998-32246017 | None:intergenic | 60.0% | |
| GCCCGAGCATATACGATGCC+AGG | - | chr8.4:32245546-32245565 | None:intergenic | 60.0% | |
| GGATCCTTCTACCCGGAAGC+TGG | - | chr8.4:32245592-32245611 | None:intergenic | 60.0% | |
| TTCGGCCGCTTGCTTTCAGC+TGG | + | chr8.4:32245990-32246009 | MS.gene83408:CDS | 60.0% | |
| !! | AGGAGAAGAGCACTCGGCTG+CGG | + | chr8.4:32245806-32245825 | MS.gene83408:CDS | 60.0% |
| GCTTCAGCCCGGCTCCACTT+TGG | + | chr8.4:32245483-32245502 | MS.gene83408:CDS | 65.0% | |
| TCAGCCCGGCTCCACTTTGG+TGG | + | chr8.4:32245486-32245505 | MS.gene83408:CDS | 65.0% | |
| GTGGAGCCGGGCTGAAGCCA+TGG | - | chr8.4:32245481-32245500 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 32245081 | 32246034 | 32245081 | ID=MS.gene83408 |
| chr8.4 | mRNA | 32245081 | 32246034 | 32245081 | ID=MS.gene83408.t1;Parent=MS.gene83408 |
| chr8.4 | exon | 32245081 | 32246034 | 32245081 | ID=MS.gene83408.t1.exon1;Parent=MS.gene83408.t1 |
| chr8.4 | CDS | 32245081 | 32246034 | 32245081 | ID=cds.MS.gene83408.t1;Parent=MS.gene83408.t1 |
| Gene Sequence |
| Protein sequence |
