Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83425.t1 | XP_013446281.1 | 97.7 | 263 | 6 | 0 | 1 | 263 | 7 | 269 | 6.40E-144 | 520 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83425.t1 | Q3T130 | 29.0 | 200 | 135 | 2 | 1 | 200 | 7 | 199 | 5.0e-12 | 73.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83425.t1 | A0A072TTZ7 | 97.7 | 263 | 6 | 0 | 1 | 263 | 7 | 269 | 4.6e-144 | 520.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056534 | MS.gene83425 | 0.906165 | 1.98E-80 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCATCTTATTATTAAT+TGG | 0.103762 | 8.4:+32432781 | None:intergenic |
| TATTTCTTCTTGTTGGAGTA+TGG | 0.270558 | 8.4:-32434502 | MS.gene83425:CDS |
| GGAACCTTATTTCTTCTTGT+TGG | 0.290898 | 8.4:-32434509 | MS.gene83425:CDS |
| GAACTCTATGTTATTTCATT+TGG | 0.293822 | 8.4:-32434377 | MS.gene83425:CDS |
| GGATTTGCAGCTTCAAGATA+TGG | 0.293962 | 8.4:-32432824 | MS.gene83425:CDS |
| TGCCAGAAGGTGCTCTTTGT+TGG | 0.316256 | 8.4:-32433225 | MS.gene83425:CDS |
| CCAGATTCCTTGCAGTGTTA+TGG | 0.333794 | 8.4:+32433021 | None:intergenic |
| TACTCCAACAAGAAGAAATA+AGG | 0.343384 | 8.4:+32434505 | None:intergenic |
| GGACATGATAATAGCCTTCT+AGG | 0.345352 | 8.4:+32433137 | None:intergenic |
| GCTCGAACTTGGAATGTCTT+AGG | 0.362458 | 8.4:+32434443 | None:intergenic |
| TTGTTGGAGTATGGCATATA+TGG | 0.364293 | 8.4:-32434493 | MS.gene83425:CDS |
| GTCCTCCTCGCCTTCCTGAT+TGG | 0.367650 | 8.4:-32433118 | MS.gene83425:CDS |
| TCTTCATCTTATTATTAATT+GGG | 0.367825 | 8.4:+32432782 | None:intergenic |
| GTAGGAACTATAGCTTCCTT+TGG | 0.382282 | 8.4:-32432845 | MS.gene83425:CDS |
| CCATAACACTGCAAGGAATC+TGG | 0.398310 | 8.4:-32433021 | MS.gene83425:CDS |
| TGAAGGACGGCTCAAGTACT+TGG | 0.407163 | 8.4:-32434399 | MS.gene83425:CDS |
| CTCAAAGTTATTCAAGTAAG+TGG | 0.407532 | 8.4:+32434280 | None:intergenic |
| ACAAGAAGAAATAAGGTTCC+AGG | 0.414770 | 8.4:+32434512 | None:intergenic |
| TTTCCCAGTCGATTTATGTA+AGG | 0.418927 | 8.4:-32433050 | MS.gene83425:CDS |
| ACTACTCACAGAGGCCTAGA+AGG | 0.420676 | 8.4:-32433151 | MS.gene83425:CDS |
| ATCCAACAAAGAGCACCTTC+TGG | 0.440213 | 8.4:+32433223 | None:intergenic |
| CAGGGTTCCAAGCTCGAACT+TGG | 0.443497 | 8.4:+32434432 | None:intergenic |
| CGTCCTTCAAATCCCGGTAC+AGG | 0.449912 | 8.4:+32434413 | None:intergenic |
| TGGGAAACATGTCGGTAAAA+CGG | 0.451333 | 8.4:+32433066 | None:intergenic |
| AACCCTGTACCGGGATTTGA+AGG | 0.463413 | 8.4:-32434416 | MS.gene83425:CDS |
| GCTGTCCTTGCTGTTCATGT+AGG | 0.470553 | 8.4:-32432863 | MS.gene83425:CDS |
| AGACATTCCAAGTTCGAGCT+TGG | 0.474473 | 8.4:-32434439 | MS.gene83425:CDS |
| ATAAAATACAAAGACCAATC+AGG | 0.477833 | 8.4:+32433104 | None:intergenic |
| GATTTGCAGCTTCAAGATAT+GGG | 0.478619 | 8.4:-32432823 | MS.gene83425:CDS |
| ATTGTCCTTCATGCTACAAC+CGG | 0.496771 | 8.4:+32432955 | None:intergenic |
| TCGAGCTTGGAACCCTGTAC+CGG | 0.503496 | 8.4:-32434426 | MS.gene83425:CDS |
| ATGCCCTTACATAAATCGAC+TGG | 0.514730 | 8.4:+32433046 | None:intergenic |
| TTCCCAGTCGATTTATGTAA+GGG | 0.527584 | 8.4:-32433049 | MS.gene83425:CDS |
| TTGAATAACTTTGAGCACTC+AGG | 0.530890 | 8.4:-32434272 | MS.gene83425:CDS |
| CGAGCTTGGAACCCTGTACC+GGG | 0.537732 | 8.4:-32434425 | MS.gene83425:CDS |
| ACAAAGAGCACCTTCTGGCA+AGG | 0.545375 | 8.4:+32433228 | None:intergenic |
| CCCTGCTCTCAGAAAAGACA+AGG | 0.556320 | 8.4:-32434214 | MS.gene83425:intron |
| TTTGGCCCTATGCTACCGTC+CGG | 0.562144 | 8.4:-32432974 | MS.gene83425:CDS |
| ACATGTCGGTAAAACGGCTC+CGG | 0.564188 | 8.4:+32433072 | None:intergenic |
| CAAAGAGCACCTTCTGGCAA+GGG | 0.567003 | 8.4:+32433229 | None:intergenic |
| CTACAACCGGACGGTAGCAT+AGG | 0.567441 | 8.4:+32432968 | None:intergenic |
| TTGAGCCGTCCTTCAAATCC+CGG | 0.569317 | 8.4:+32434407 | None:intergenic |
| TCGAAGGAGAGTGAGGTTCG+TGG | 0.586812 | 8.4:-32432917 | MS.gene83425:CDS |
| ACCGTCCGGTTGTAGCATGA+AGG | 0.596841 | 8.4:-32432960 | MS.gene83425:CDS |
| GGCATTGCCATAACACTGCA+AGG | 0.598058 | 8.4:-32433028 | MS.gene83425:CDS |
| TGTTGTTACATGTCATTCGA+AGG | 0.601468 | 8.4:-32432933 | MS.gene83425:CDS |
| GTCCTTCAAATCCCGGTACA+GGG | 0.603842 | 8.4:+32434414 | None:intergenic |
| TACAACCGGACGGTAGCATA+GGG | 0.608425 | 8.4:+32432969 | None:intergenic |
| AGATATATTCCCTTGCCAGA+AGG | 0.617393 | 8.4:-32433238 | MS.gene83425:CDS |
| TCTTGAAGCTGCAAATCCAA+AGG | 0.618524 | 8.4:+32432829 | None:intergenic |
| AAATCGACTGGGAAACATGT+CGG | 0.624423 | 8.4:+32433058 | None:intergenic |
| ATGTCATTCGAAGGAGAGTG+AGG | 0.625750 | 8.4:-32432924 | MS.gene83425:CDS |
| CTGTACCGGGATTTGAAGGA+CGG | 0.627212 | 8.4:-32434412 | MS.gene83425:CDS |
| TGCCCTTACATAAATCGACT+GGG | 0.628576 | 8.4:+32433047 | None:intergenic |
| GACCAATCAGGAAGGCGAGG+AGG | 0.633883 | 8.4:+32433116 | None:intergenic |
| AAAGACCAATCAGGAAGGCG+AGG | 0.635504 | 8.4:+32433113 | None:intergenic |
| TCCTTCATGCTACAACCGGA+CGG | 0.644939 | 8.4:+32432959 | None:intergenic |
| AATACAAAGACCAATCAGGA+AGG | 0.661377 | 8.4:+32433108 | None:intergenic |
| ATACTCTGCAGTGAATGCTG+TGG | 0.693297 | 8.4:+32433195 | None:intergenic |
| AGGGCCAAAGAGAACAAAAG+CGG | 0.695971 | 8.4:+32432988 | None:intergenic |
| TAGTTCCTACATGAACAGCA+AGG | 0.707671 | 8.4:+32432858 | None:intergenic |
| TTTCATTCAACTACTCACAG+AGG | 0.714436 | 8.4:-32433160 | MS.gene83425:CDS |
| ATGGCATATATGGTGCTCTG+TGG | 0.727328 | 8.4:-32434483 | MS.gene83425:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTTTCCATTTTTTAT+TGG | + | chr8.4:32433531-32433550 | None:intergenic | 10.0% |
| !! | AAAATATATAACCAAGTTTA+AGG | + | chr8.4:32433812-32433831 | None:intergenic | 15.0% |
| !! | TTGTAATTACCAATAAAAAA+TGG | - | chr8.4:32433519-32433538 | MS.gene83425:intron | 15.0% |
| !! | AAATAAATAACCATAGCTTA+AGG | + | chr8.4:32434034-32434053 | None:intergenic | 20.0% |
| !! | AATAAACTAAGACTTAGTAA+AGG | + | chr8.4:32433459-32433478 | None:intergenic | 20.0% |
| !! | ATAATGCATGTGTTTAAATT+AGG | + | chr8.4:32433667-32433686 | None:intergenic | 20.0% |
| !! | ATGTTATTCTACATGTTATT+TGG | - | chr8.4:32433179-32433198 | MS.gene83425:CDS | 20.0% |
| !! | CTTATTTCCATTAACATTTA+AGG | - | chr8.4:32433953-32433972 | MS.gene83425:intron | 20.0% |
| !! | TTTACTAAGTCTTAGTTTAT+TGG | - | chr8.4:32433458-32433477 | MS.gene83425:intron | 20.0% |
| !!! | TATATATTTTCCATCTCTAA+GGG | - | chr8.4:32433822-32433841 | MS.gene83425:intron | 20.0% |
| !!! | TGTTATTCTACATGTTATTT+GGG | - | chr8.4:32433180-32433199 | MS.gene83425:CDS | 20.0% |
| !!! | TTATATATTTTCCATCTCTA+AGG | - | chr8.4:32433821-32433840 | MS.gene83425:intron | 20.0% |
| !!! | TTTATTTTATCCTTAAGCTA+TGG | - | chr8.4:32434021-32434040 | MS.gene83425:intron | 20.0% |
| ! | AAGCTATCCTTAAATGTTAA+TGG | + | chr8.4:32433963-32433982 | None:intergenic | 25.0% |
| ! | ACAGAATAAGATCAAATTAG+AGG | + | chr8.4:32434061-32434080 | None:intergenic | 25.0% |
| ! | ACAGTAAACAATATAAACTC+AGG | + | chr8.4:32433263-32433282 | None:intergenic | 25.0% |
| ! | AGAATAACATCATTAGTAGT+AGG | + | chr8.4:32433169-32433188 | None:intergenic | 25.0% |
| ! | ATAAAATACAAAGACCAATC+AGG | + | chr8.4:32434218-32434237 | None:intergenic | 25.0% |
| ! | TAAACACATGCATTATGTAA+TGG | - | chr8.4:32433671-32433690 | MS.gene83425:intron | 25.0% |
| ! | TATATTGTTTACTGTCTTCA+AGG | - | chr8.4:32433268-32433287 | MS.gene83425:intron | 25.0% |
| ! | TGTTATTCAGATAATGATCA+AGG | + | chr8.4:32433603-32433622 | None:intergenic | 25.0% |
| !! | GCTTATTTGAGTTTATCTAT+TGG | - | chr8.4:32433858-32433877 | MS.gene83425:intron | 25.0% |
| !! | GTTATTCTACATGTTATTTG+GGG | - | chr8.4:32433181-32433200 | MS.gene83425:CDS | 25.0% |
| !! | TGTATTTTATCTTCAATTGC+CGG | - | chr8.4:32434228-32434247 | MS.gene83425:CDS | 25.0% |
| !!! | GAACTCTATGTTATTTCATT+TGG | - | chr8.4:32432942-32432961 | MS.gene83425:CDS | 25.0% |
| !!! | TTTAGTTTTGAGTAAACACA+AGG | - | chr8.4:32433488-32433507 | MS.gene83425:intron | 25.0% |
| AATGATCAAGGAAGTGAAAA+TGG | + | chr8.4:32433591-32433610 | None:intergenic | 30.0% | |
| ACCAAGTTTAAGGACAAAAA+TGG | + | chr8.4:32433802-32433821 | None:intergenic | 30.0% | |
| ATGTGATAATACACACACTT+AGG | - | chr8.4:32433342-32433361 | MS.gene83425:intron | 30.0% | |
| CTCAAAGTTATTCAAGTAAG+TGG | + | chr8.4:32433042-32433061 | None:intergenic | 30.0% | |
| CTCAAATAAGCTTATGCAAA+CGG | + | chr8.4:32433849-32433868 | None:intergenic | 30.0% | |
| TACTCCAACAAGAAGAAATA+AGG | + | chr8.4:32432817-32432836 | None:intergenic | 30.0% | |
| TATTTCTTCTTGTTGGAGTA+TGG | - | chr8.4:32432817-32432836 | MS.gene83425:CDS | 30.0% | |
| TCAAATAAGCTTATGCAAAC+GGG | + | chr8.4:32433848-32433867 | None:intergenic | 30.0% | |
| TGAAAATGGAAAAGAAGGAA+AGG | + | chr8.4:32433577-32433596 | None:intergenic | 30.0% | |
| TTAGTAGTAGGTTGTGTTTA+AGG | + | chr8.4:32433157-32433176 | None:intergenic | 30.0% | |
| !! | CTTCTGATGTTTTTGATCTT+CGG | - | chr8.4:32433074-32433093 | MS.gene83425:CDS | 30.0% |
| !!! | ACACAACTGAAGTTTTTTGT+TGG | - | chr8.4:32433002-32433021 | MS.gene83425:CDS | 30.0% |
| AAGTGGAGTGTACAAATTCT+TGG | - | chr8.4:32433307-32433326 | MS.gene83425:intron | 35.0% | |
| AATACAAAGACCAATCAGGA+AGG | + | chr8.4:32434214-32434233 | None:intergenic | 35.0% | |
| ACAAGAAGAAATAAGGTTCC+AGG | + | chr8.4:32432810-32432829 | None:intergenic | 35.0% | |
| AGTGGAGTGTACAAATTCTT+GGG | - | chr8.4:32433308-32433327 | MS.gene83425:intron | 35.0% | |
| ATGCATACTTCATGCACATT+AGG | - | chr8.4:32433404-32433423 | MS.gene83425:intron | 35.0% | |
| ATGGAAAAGAAGGAAAGGAT+CGG | + | chr8.4:32433572-32433591 | None:intergenic | 35.0% | |
| GATTTGCAGCTTCAAGATAT+GGG | - | chr8.4:32434496-32434515 | MS.gene83425:CDS | 35.0% | |
| GGAAGTGAAAATGGAAAAGA+AGG | + | chr8.4:32433582-32433601 | None:intergenic | 35.0% | |
| TGCATACTTCATGCACATTA+GGG | - | chr8.4:32433405-32433424 | MS.gene83425:intron | 35.0% | |
| TGTTGTTACATGTCATTCGA+AGG | - | chr8.4:32434386-32434405 | MS.gene83425:CDS | 35.0% | |
| TTGAATAACTTTGAGCACTC+AGG | - | chr8.4:32433047-32433066 | MS.gene83425:CDS | 35.0% | |
| TTGTTGGAGTATGGCATATA+TGG | - | chr8.4:32432826-32432845 | MS.gene83425:CDS | 35.0% | |
| TTTCATTCAACTACTCACAG+AGG | - | chr8.4:32434159-32434178 | MS.gene83425:intron | 35.0% | |
| TTTGGGGAAAATAGATGCTA+TGG | - | chr8.4:32433197-32433216 | MS.gene83425:CDS | 35.0% | |
| ! | AAGCACTTGTTAGACTGTTT+GGG | - | chr8.4:32433884-32433903 | MS.gene83425:intron | 35.0% |
| ! | GAGATGGTAATGCTTATAAG+TGG | - | chr8.4:32433290-32433309 | MS.gene83425:intron | 35.0% |
| ! | GGAACCTTATTTCTTCTTGT+TGG | - | chr8.4:32432810-32432829 | MS.gene83425:CDS | 35.0% |
| ! | TAAGCACTTGTTAGACTGTT+TGG | - | chr8.4:32433883-32433902 | MS.gene83425:intron | 35.0% |
| ! | TTCCCAGTCGATTTATGTAA+GGG | - | chr8.4:32434270-32434289 | MS.gene83425:CDS | 35.0% |
| ! | TTTCCCAGTCGATTTATGTA+AGG | - | chr8.4:32434269-32434288 | MS.gene83425:CDS | 35.0% |
| !!! | CAACTGAAGTTTTTTGTTGG+TGG | - | chr8.4:32433005-32433024 | MS.gene83425:CDS | 35.0% |
| !!! | GCCATTTTTGTCCTTAAACT+TGG | - | chr8.4:32433798-32433817 | MS.gene83425:intron | 35.0% |
| AAATCGACTGGGAAACATGT+CGG | + | chr8.4:32434264-32434283 | None:intergenic | 40.0% | |
| AGATATATTCCCTTGCCAGA+AGG | - | chr8.4:32434081-32434100 | MS.gene83425:intron | 40.0% | |
| ATGCCCTTACATAAATCGAC+TGG | + | chr8.4:32434276-32434295 | None:intergenic | 40.0% | |
| ATTGTCCTTCATGCTACAAC+CGG | + | chr8.4:32434367-32434386 | None:intergenic | 40.0% | |
| CTCTCAGAAAAGACAAGGTT+AGG | - | chr8.4:32433110-32433129 | MS.gene83425:CDS | 40.0% | |
| GGACATGATAATAGCCTTCT+AGG | + | chr8.4:32434185-32434204 | None:intergenic | 40.0% | |
| GGATTTGCAGCTTCAAGATA+TGG | - | chr8.4:32434495-32434514 | MS.gene83425:CDS | 40.0% | |
| GTAGGAACTATAGCTTCCTT+TGG | - | chr8.4:32434474-32434493 | MS.gene83425:CDS | 40.0% | |
| GTTTACTGTCTTCAAGGAGA+TGG | - | chr8.4:32433274-32433293 | MS.gene83425:intron | 40.0% | |
| TAGTTCCTACATGAACAGCA+AGG | + | chr8.4:32434464-32434483 | None:intergenic | 40.0% | |
| TCTTGAAGCTGCAAATCCAA+AGG | + | chr8.4:32434493-32434512 | None:intergenic | 40.0% | |
| TGCCCTTACATAAATCGACT+GGG | + | chr8.4:32434275-32434294 | None:intergenic | 40.0% | |
| TGGGAAACATGTCGGTAAAA+CGG | + | chr8.4:32434256-32434275 | None:intergenic | 40.0% | |
| !! | AGGTGTTGTTGTTATGTTCC+TGG | - | chr8.4:32433130-32433149 | MS.gene83425:CDS | 40.0% |
| AATACCTCACCACTCTCATG+AGG | - | chr8.4:32433375-32433394 | MS.gene83425:intron | 45.0% | |
| AGACATTCCAAGTTCGAGCT+TGG | - | chr8.4:32432880-32432899 | MS.gene83425:CDS | 45.0% | |
| AGACTGTTTGGGAGAGCTTA+TGG | - | chr8.4:32433895-32433914 | MS.gene83425:intron | 45.0% | |
| AGGGCCAAAGAGAACAAAAG+CGG | + | chr8.4:32434334-32434353 | None:intergenic | 45.0% | |
| ATACTCTGCAGTGAATGCTG+TGG | + | chr8.4:32434127-32434146 | None:intergenic | 45.0% | |
| ATGGCATATATGGTGCTCTG+TGG | - | chr8.4:32432836-32432855 | MS.gene83425:CDS | 45.0% | |
| ATGTCATTCGAAGGAGAGTG+AGG | - | chr8.4:32434395-32434414 | MS.gene83425:CDS | 45.0% | |
| CATGACTTTCCTCATGAGAG+TGG | + | chr8.4:32433387-32433406 | None:intergenic | 45.0% | |
| CCAGATTCCTTGCAGTGTTA+TGG | + | chr8.4:32434301-32434320 | None:intergenic | 45.0% | |
| CCATAACACTGCAAGGAATC+TGG | - | chr8.4:32434298-32434317 | MS.gene83425:CDS | 45.0% | |
| GCTCGAACTTGGAATGTCTT+AGG | + | chr8.4:32432879-32432898 | None:intergenic | 45.0% | |
| GTAGGTTGTGTTTAAGGACC+AGG | + | chr8.4:32433151-32433170 | None:intergenic | 45.0% | |
| !! | ACCTTGTCTTTTCTGAGAGC+AGG | + | chr8.4:32433109-32433128 | None:intergenic | 45.0% |
| !! | ATCCAACAAAGAGCACCTTC+TGG | + | chr8.4:32434099-32434118 | None:intergenic | 45.0% |
| !! | CAGACCGCTTTTGTTCTCTT+TGG | - | chr8.4:32434327-32434346 | MS.gene83425:CDS | 45.0% |
| !! | CCTTGTCTTTTCTGAGAGCA+GGG | + | chr8.4:32433108-32433127 | None:intergenic | 45.0% |
| AAAGACCAATCAGGAAGGCG+AGG | + | chr8.4:32434209-32434228 | None:intergenic | 50.0% | |
| AACCCTGTACCGGGATTTGA+AGG | - | chr8.4:32432903-32432922 | MS.gene83425:CDS | 50.0% | |
| ACATGTCGGTAAAACGGCTC+CGG | + | chr8.4:32434250-32434269 | None:intergenic | 50.0% | |
| ACTACTCACAGAGGCCTAGA+AGG | - | chr8.4:32434168-32434187 | MS.gene83425:intron | 50.0% | |
| CCCTGCTCTCAGAAAAGACA+AGG | - | chr8.4:32433105-32433124 | MS.gene83425:CDS | 50.0% | |
| CTGTACCGGGATTTGAAGGA+CGG | - | chr8.4:32432907-32432926 | MS.gene83425:CDS | 50.0% | |
| CTTTCCTCATGAGAGTGGTG+AGG | + | chr8.4:32433382-32433401 | None:intergenic | 50.0% | |
| GGCATTGCCATAACACTGCA+AGG | - | chr8.4:32434291-32434310 | MS.gene83425:CDS | 50.0% | |
| GTCCTTCAAATCCCGGTACA+GGG | + | chr8.4:32432908-32432927 | None:intergenic | 50.0% | |
| TACAACCGGACGGTAGCATA+GGG | + | chr8.4:32434353-32434372 | None:intergenic | 50.0% | |
| TCCTTCATGCTACAACCGGA+CGG | + | chr8.4:32434363-32434382 | None:intergenic | 50.0% | |
| TGAAGGACGGCTCAAGTACT+TGG | - | chr8.4:32432920-32432939 | MS.gene83425:CDS | 50.0% | |
| TTGAGCCGTCCTTCAAATCC+CGG | + | chr8.4:32432915-32432934 | None:intergenic | 50.0% | |
| ! | GGAAAGGATCGGTGCTTGTT+TGG | + | chr8.4:32433561-32433580 | None:intergenic | 50.0% |
| !! | ACAAAGAGCACCTTCTGGCA+AGG | + | chr8.4:32434094-32434113 | None:intergenic | 50.0% |
| !! | CAAAGAGCACCTTCTGGCAA+GGG | + | chr8.4:32434093-32434112 | None:intergenic | 50.0% |
| !! | GCTGTCCTTGCTGTTCATGT+AGG | - | chr8.4:32434456-32434475 | MS.gene83425:CDS | 50.0% |
| !! | TGCCAGAAGGTGCTCTTTGT+TGG | - | chr8.4:32434094-32434113 | MS.gene83425:intron | 50.0% |
| ACCGTCCGGTTGTAGCATGA+AGG | - | chr8.4:32434359-32434378 | MS.gene83425:CDS | 55.0% | |
| CAGGGTTCCAAGCTCGAACT+TGG | + | chr8.4:32432890-32432909 | None:intergenic | 55.0% | |
| CGTCCTTCAAATCCCGGTAC+AGG | + | chr8.4:32432909-32432928 | None:intergenic | 55.0% | |
| CTACAACCGGACGGTAGCAT+AGG | + | chr8.4:32434354-32434373 | None:intergenic | 55.0% | |
| TCGAAGGAGAGTGAGGTTCG+TGG | - | chr8.4:32434402-32434421 | MS.gene83425:CDS | 55.0% | |
| TCGAGCTTGGAACCCTGTAC+CGG | - | chr8.4:32432893-32432912 | MS.gene83425:CDS | 55.0% | |
| TGCAAACGGGCCCTTAGAGA+TGG | + | chr8.4:32433835-32433854 | None:intergenic | 55.0% | |
| TTTGGCCCTATGCTACCGTC+CGG | - | chr8.4:32434345-32434364 | MS.gene83425:CDS | 55.0% | |
| CGAGCTTGGAACCCTGTACC+GGG | - | chr8.4:32432894-32432913 | MS.gene83425:CDS | 60.0% | |
| GACCAATCAGGAAGGCGAGG+AGG | + | chr8.4:32434206-32434225 | None:intergenic | 60.0% | |
| GTCCTCCTCGCCTTCCTGAT+TGG | - | chr8.4:32434201-32434220 | MS.gene83425:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 32432796 | 32434545 | 32432796 | ID=MS.gene83425 |
| chr8.4 | mRNA | 32432796 | 32434545 | 32432796 | ID=MS.gene83425.t1;Parent=MS.gene83425 |
| chr8.4 | exon | 32434215 | 32434545 | 32434215 | ID=MS.gene83425.t1.exon1;Parent=MS.gene83425.t1 |
| chr8.4 | CDS | 32434215 | 32434545 | 32434215 | ID=cds.MS.gene83425.t1;Parent=MS.gene83425.t1 |
| chr8.4 | exon | 32432796 | 32433258 | 32432796 | ID=MS.gene83425.t1.exon2;Parent=MS.gene83425.t1 |
| chr8.4 | CDS | 32432796 | 32433258 | 32432796 | ID=cds.MS.gene83425.t1;Parent=MS.gene83425.t1 |
| Gene Sequence |
| Protein sequence |
