Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83429.t1 | XP_013449504.1 | 97.5 | 279 | 7 | 0 | 3 | 281 | 50 | 328 | 1.10E-152 | 549.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83429.t1 | Q9LU39 | 25.4 | 244 | 154 | 8 | 41 | 276 | 61 | 284 | 1.7e-10 | 68.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83429.t1 | A0A072U1J2 | 97.5 | 279 | 7 | 0 | 3 | 281 | 50 | 328 | 7.6e-153 | 549.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050315 | MS.gene83429 | 0.820223 | 7.68E-53 | -1.69E-46 |
| MS.gene050747 | MS.gene83429 | 0.80217 | 6.37E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene83429 | 0.802839 | 4.64E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene83429 | 0.841117 | 5.77E-58 | -1.69E-46 |
| MS.gene052414 | MS.gene83429 | 0.802165 | 6.39E-49 | -1.69E-46 |
| MS.gene052982 | MS.gene83429 | 0.816794 | 4.60E-52 | -1.69E-46 |
| MS.gene054920 | MS.gene83429 | 0.810344 | 1.21E-50 | -1.69E-46 |
| MS.gene055539 | MS.gene83429 | 0.846402 | 2.22E-59 | -1.69E-46 |
| MS.gene055741 | MS.gene83429 | 0.802506 | 5.43E-49 | -1.69E-46 |
| MS.gene055744 | MS.gene83429 | 0.80178 | 7.66E-49 | -1.69E-46 |
| MS.gene056514 | MS.gene83429 | 0.813807 | 2.12E-51 | -1.69E-46 |
| MS.gene058090 | MS.gene83429 | 0.807098 | 5.97E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene83429 | 0.846057 | 2.76E-59 | -1.69E-46 |
| MS.gene058948 | MS.gene83429 | 0.821064 | 4.92E-53 | -1.69E-46 |
| MS.gene059868 | MS.gene83429 | 0.800169 | 1.64E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83429.t1 | MTR_7g085670 | 97.491 | 279 | 7 | 0 | 3 | 281 | 50 | 328 | 0.0 | 563 |
| MS.gene83429.t1 | MTR_7g085670 | 97.740 | 177 | 4 | 0 | 3 | 179 | 50 | 226 | 8.87e-126 | 358 |
| MS.gene83429.t1 | MTR_4g007990 | 28.571 | 245 | 149 | 12 | 36 | 268 | 135 | 365 | 1.92e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83429.t1 | AT3G03890 | 76.357 | 258 | 61 | 0 | 20 | 277 | 62 | 319 | 3.59e-148 | 418 |
| MS.gene83429.t1 | AT3G03890 | 75.000 | 244 | 61 | 0 | 20 | 263 | 62 | 305 | 6.54e-138 | 391 |
| MS.gene83429.t1 | AT1G51560 | 27.626 | 257 | 136 | 12 | 36 | 268 | 141 | 371 | 1.10e-17 | 82.4 |
| MS.gene83429.t1 | AT3G21140 | 29.084 | 251 | 140 | 11 | 36 | 268 | 137 | 367 | 1.50e-17 | 82.0 |
Find 66 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACACAAATCGTACAACTTT+TGG | 0.244472 | 7.2:+22119431 | None:intergenic |
| TCCTAAATGTTCAGTGCTTT+TGG | 0.253580 | 7.2:-22119877 | MS.gene83429:CDS |
| GGCCATACGAGCTGCATATT+TGG | 0.255255 | 7.2:-22119606 | MS.gene83429:CDS |
| CTTTGCTGACATAATAGATT+TGG | 0.270171 | 7.2:-22118395 | MS.gene83429:CDS |
| CGAGACATCCCAATGCGTTT+TGG | 0.271589 | 7.2:-22119583 | MS.gene83429:CDS |
| GCCAAAAGCACTGAACATTT+AGG | 0.293730 | 7.2:+22119876 | None:intergenic |
| GGTGTTGCCACAGCTTTGTT+AGG | 0.347039 | 7.2:-22119407 | MS.gene83429:CDS |
| CGGTTATCCATCAGGATCTA+TGG | 0.347934 | 7.2:-22120302 | MS.gene83429:CDS |
| ATGAATCAGGTTGTTTCCTC+TGG | 0.356396 | 7.2:-22121410 | MS.gene83429:intron |
| TCAATTAATTCAAGCTCATC+AGG | 0.370693 | 7.2:-22121357 | MS.gene83429:intron |
| GGCTTGGAAAACTGAGCAAT+GGG | 0.383757 | 7.2:+22118688 | None:intergenic |
| GCCACAGCTTTGTTAGGATC+AGG | 0.395641 | 7.2:-22119401 | MS.gene83429:CDS |
| TCCTGAAGATAGGACTGATT+TGG | 0.404816 | 7.2:-22119847 | MS.gene83429:CDS |
| CAACTTGAGGCTTGGCAGCT+TGG | 0.406436 | 7.2:+22117890 | None:intergenic |
| ACAGTTCGAATTTCTTCAAC+TGG | 0.411436 | 7.2:+22120918 | None:intergenic |
| TCTTCGACTTCAGAGTTTAC+CGG | 0.413103 | 7.2:-22118739 | MS.gene83429:intron |
| TCGTCTAGGTTTCAATGTTA+AGG | 0.415391 | 7.2:-22118371 | MS.gene83429:intron |
| AAGTCGCTCACTGCTAATAT+AGG | 0.415949 | 7.2:+22120250 | None:intergenic |
| TGCTGATTTGTACTCATCTC+CGG | 0.430709 | 7.2:+22118720 | None:intergenic |
| TCTTACTTTCTATCTTCTGC+AGG | 0.436757 | 7.2:+22118046 | None:intergenic |
| TGGCTAGAGATCCTGAAGAT+AGG | 0.437357 | 7.2:-22119857 | MS.gene83429:CDS |
| GCAGCACTGGACCTCAGTTC+CGG | 0.448145 | 7.2:-22118515 | MS.gene83429:intron |
| AGGTACCTGAGTAGTGGATT+GGG | 0.448889 | 7.2:+22121616 | None:intergenic |
| TTATATTCAGGTACCTGAAA+AGG | 0.458927 | 7.2:-22119636 | MS.gene83429:intron |
| CTGTACTTTGCAGGACTTAG+CGG | 0.469481 | 7.2:-22119904 | MS.gene83429:intron |
| AAGTATGACGGTTATCCATC+AGG | 0.473161 | 7.2:-22120310 | MS.gene83429:CDS |
| CTCGTAATGAAGGTTGACTT+TGG | 0.474484 | 7.2:-22119479 | MS.gene83429:intron |
| GATTAATACCGCTACTGGCT+TGG | 0.477699 | 7.2:+22118672 | None:intergenic |
| AAAGTTACCCAAAACGCATT+GGG | 0.484421 | 7.2:+22119575 | None:intergenic |
| TTTCTATCTTCTGCAGGTCG+AGG | 0.484803 | 7.2:+22118052 | None:intergenic |
| GAGGTACCTGAGTAGTGGAT+TGG | 0.486138 | 7.2:+22121615 | None:intergenic |
| CGCCAAATATGCAGCTCGTA+TGG | 0.487531 | 7.2:+22119604 | None:intergenic |
| TTAGAGATTAATACCGCTAC+TGG | 0.492574 | 7.2:+22118667 | None:intergenic |
| CTAAAGCGATTGTGCAGCAC+TGG | 0.493445 | 7.2:-22118528 | MS.gene83429:CDS |
| TTGGTTCAATGCGTACAAAT+CGG | 0.494738 | 7.2:+22119450 | None:intergenic |
| CGACTTGGCAGTTCATTCAA+AGG | 0.496656 | 7.2:-22120233 | MS.gene83429:intron |
| TTCTATCTTCTGCAGGTCGA+GGG | 0.497692 | 7.2:+22118053 | None:intergenic |
| GACTTTGCATGTGATGCAAA+TGG | 0.502893 | 7.2:-22120277 | MS.gene83429:CDS |
| ACCAAATCAGTCCTATCTTC+AGG | 0.507307 | 7.2:+22119846 | None:intergenic |
| AAAAGTTACCCAAAACGCAT+TGG | 0.512742 | 7.2:+22119574 | None:intergenic |
| AAAGTTGTACGATTTGTGTC+AGG | 0.512754 | 7.2:-22119428 | MS.gene83429:CDS |
| AACAGAAACCTTCGAGAATG+TGG | 0.529578 | 7.2:+22120866 | None:intergenic |
| GTATCAATCAACTTGAGGCT+TGG | 0.543974 | 7.2:+22117882 | None:intergenic |
| TCTTCTGCAGGTCGAGGGAA+AGG | 0.546658 | 7.2:+22118058 | None:intergenic |
| TAGATGTATCAATCAACTTG+AGG | 0.555292 | 7.2:+22117877 | None:intergenic |
| ATAATAGATTTGGATCGTCT+AGG | 0.558053 | 7.2:-22118385 | MS.gene83429:CDS |
| GGTACCTGAAAAGGATAAAG+AGG | 0.559008 | 7.2:-22119627 | MS.gene83429:CDS |
| TGGCTTGGAAAACTGAGCAA+TGG | 0.563411 | 7.2:+22118687 | None:intergenic |
| TTCTTCCCAATCCACTACTC+AGG | 0.566362 | 7.2:-22121621 | MS.gene83429:intron |
| GTTCGAATTTCTTCAACTGG+TGG | 0.572856 | 7.2:+22120921 | None:intergenic |
| GACGCTCTCCACATTCTCGA+AGG | 0.577675 | 7.2:-22120874 | MS.gene83429:intron |
| TCCCACGTAGACTACGATCA+AGG | 0.587187 | 7.2:+22120895 | None:intergenic |
| AAATAGAGGTACCTGAGTAG+TGG | 0.589705 | 7.2:+22121610 | None:intergenic |
| CAGGTCGAGGGAAAGGCACA+CGG | 0.592459 | 7.2:+22118065 | None:intergenic |
| TATATTAGCAGTGAGCGACT+TGG | 0.593728 | 7.2:-22120248 | MS.gene83429:CDS |
| AAGTCAACCATAGATCCTGA+TGG | 0.598237 | 7.2:+22120295 | None:intergenic |
| ACAGCTTTGTTAGGATCAGG+AGG | 0.602593 | 7.2:-22119398 | MS.gene83429:intron |
| GTCCTTGATCGTAGTCTACG+TGG | 0.607414 | 7.2:-22120897 | MS.gene83429:CDS |
| TTTGACACGCAGAAGTATGA+CGG | 0.611261 | 7.2:-22120322 | MS.gene83429:intron |
| TCCTTGATCGTAGTCTACGT+GGG | 0.641535 | 7.2:-22120896 | MS.gene83429:CDS |
| AAGGGGACATACCGGAACTG+AGG | 0.652484 | 7.2:+22118504 | None:intergenic |
| TCCTGATCCTAACAAAGCTG+TGG | 0.652822 | 7.2:+22119400 | None:intergenic |
| TCGCACATGAACAAAGATCA+CGG | 0.675086 | 7.2:-22118559 | MS.gene83429:CDS |
| GATTTGGTGATCACTATCCA+CGG | 0.676849 | 7.2:-22119831 | MS.gene83429:CDS |
| GCTTGGAAAACTGAGCAATG+GGG | 0.731088 | 7.2:+22118689 | None:intergenic |
| TTACAAAGATAGCGTCACCG+TGG | 0.762471 | 7.2:+22119814 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAACTGTAAATTATTA+TGG | - | chr7.2:22118795-22118814 | MS.gene83429:intron | 10.0% |
| !! | ATTTGATAAATAATAGTAAA+AGG | + | chr7.2:22119789-22119808 | None:intergenic | 10.0% |
| !! | CTATTGAATAATAATTAATT+GGG | - | chr7.2:22117968-22117987 | MS.gene83429:intron | 10.0% |
| !! | TATATTAAAAGAGAAAATTT+GGG | + | chr7.2:22120920-22120939 | None:intergenic | 10.0% |
| !! | TTATATTAAAAGAGAAAATT+TGG | + | chr7.2:22120921-22120940 | None:intergenic | 10.0% |
| !! | AAGAAATAATGTATAACTAA+TGG | + | chr7.2:22119751-22119770 | None:intergenic | 15.0% |
| !! | AATATTATCATGTAAACATA+GGG | - | chr7.2:22120266-22120285 | MS.gene83429:CDS | 15.0% |
| !! | ACTATTATTTATCAAATGAT+TGG | - | chr7.2:22119792-22119811 | MS.gene83429:intron | 15.0% |
| !! | CCAATTAATTATTATTCAAT+AGG | + | chr7.2:22117970-22117989 | None:intergenic | 15.0% |
| !! | CCTATTGAATAATAATTAAT+TGG | - | chr7.2:22117967-22117986 | MS.gene83429:intron | 15.0% |
| !! | TGCATAAAAAAGAATATATA+AGG | - | chr7.2:22120581-22120600 | MS.gene83429:intron | 15.0% |
| !!! | TATTTATTGCTTTTCTTTTA+GGG | - | chr7.2:22121576-22121595 | MS.gene83429:intron | 15.0% |
| !!! | TGAAATTTTGTTTTAGTAAT+TGG | - | chr7.2:22119132-22119151 | MS.gene83429:intron | 15.0% |
| !!! | TTTTAGTTAAGTTTTGATTT+TGG | + | chr7.2:22120416-22120435 | None:intergenic | 15.0% |
| !!! | TTTTTAACAATAAACTTTGA+GGG | + | chr7.2:22119339-22119358 | None:intergenic | 15.0% |
| !!! | TTTTTTAACAATAAACTTTG+AGG | + | chr7.2:22119340-22119359 | None:intergenic | 15.0% |
| !! | AAAAAAAAACAGCATATTGT+AGG | + | chr7.2:22121528-22121547 | None:intergenic | 20.0% |
| !! | AATAGGTTCAAAGAAAAAAA+GGG | + | chr7.2:22117953-22117972 | None:intergenic | 20.0% |
| !! | AATTGAATGTGTATAATTTC+AGG | - | chr7.2:22118520-22118539 | MS.gene83429:CDS | 20.0% |
| !! | AATTTGTGAACTTGTATAAA+TGG | - | chr7.2:22119416-22119435 | MS.gene83429:CDS | 20.0% |
| !! | ATAATAGAATCATTATACGA+AGG | - | chr7.2:22119831-22119850 | MS.gene83429:CDS | 20.0% |
| !! | ATACACATGAAATTAACTTA+TGG | + | chr7.2:22120711-22120730 | None:intergenic | 20.0% |
| !! | CAATATTATCATGTAAACAT+AGG | - | chr7.2:22120265-22120284 | MS.gene83429:CDS | 20.0% |
| !! | TAATAGAATCATTATACGAA+GGG | - | chr7.2:22119832-22119851 | MS.gene83429:CDS | 20.0% |
| !! | TAATTAATTAATGTGATTCG+TGG | - | chr7.2:22118081-22118100 | MS.gene83429:CDS | 20.0% |
| !! | TTTAAAAATCACCTACAAAT+TGG | - | chr7.2:22121261-22121280 | MS.gene83429:intron | 20.0% |
| !!! | AAGATTGATTTATGTTAATG+GGG | - | chr7.2:22118543-22118562 | MS.gene83429:CDS | 20.0% |
| !!! | ATAATCATTTTTTTTTAGGC+TGG | - | chr7.2:22121405-22121424 | MS.gene83429:intron | 20.0% |
| !!! | ATTTTATTCCACTCATAAAA+AGG | + | chr7.2:22120244-22120263 | None:intergenic | 20.0% |
| !!! | CTATTTATTGCTTTTCTTTT+AGG | - | chr7.2:22121575-22121594 | MS.gene83429:intron | 20.0% |
| !!! | GAAGATTGATTTATGTTAAT+GGG | - | chr7.2:22118542-22118561 | MS.gene83429:CDS | 20.0% |
| !!! | TTTTATTCCACTCATAAAAA+GGG | + | chr7.2:22120243-22120262 | None:intergenic | 20.0% |
| ! | AAATAAAAGACAAGATGAGA+AGG | + | chr7.2:22119176-22119195 | None:intergenic | 25.0% |
| ! | AAATATCTTTCCATTACTTC+AGG | - | chr7.2:22120662-22120681 | MS.gene83429:intron | 25.0% |
| ! | AATAGAATCATTATACGAAG+GGG | - | chr7.2:22119833-22119852 | MS.gene83429:CDS | 25.0% |
| ! | ACATCATATTTGATATAAGC+TGG | - | chr7.2:22121493-22121512 | MS.gene83429:intron | 25.0% |
| ! | ACTTCTACAAAAATCAATGA+AGG | + | chr7.2:22118317-22118336 | None:intergenic | 25.0% |
| ! | ATAGTCCTGAAATTATATTC+AGG | - | chr7.2:22119869-22119888 | MS.gene83429:CDS | 25.0% |
| ! | ATGTAAACTTCACATAAGAT+GGG | + | chr7.2:22118726-22118745 | None:intergenic | 25.0% |
| ! | ATTAAAAGAGAAAATTTGGG+TGG | + | chr7.2:22120917-22120936 | None:intergenic | 25.0% |
| ! | ATTAACTTATGGTTCATAGA+TGG | + | chr7.2:22120700-22120719 | None:intergenic | 25.0% |
| ! | ATTATAACTGTTAAGATGAC+CGG | + | chr7.2:22119527-22119546 | None:intergenic | 25.0% |
| ! | ATTTCAGAAAAGTTCATGTT+AGG | + | chr7.2:22120373-22120392 | None:intergenic | 25.0% |
| ! | CAATAGGTTCAAAGAAAAAA+AGG | + | chr7.2:22117954-22117973 | None:intergenic | 25.0% |
| ! | CAGTGAAGATTTCAATTTAA+TGG | + | chr7.2:22119087-22119106 | None:intergenic | 25.0% |
| ! | GATTTCTTTATCCAATTTGT+AGG | + | chr7.2:22121275-22121294 | None:intergenic | 25.0% |
| ! | GTATATAGTATGATCAAGAA+AGG | - | chr7.2:22121048-22121067 | MS.gene83429:intron | 25.0% |
| ! | TAAGTAAAAATACTGCCTAA+AGG | + | chr7.2:22121229-22121248 | None:intergenic | 25.0% |
| ! | TCATACTATATACTGTACAA+CGG | + | chr7.2:22121041-22121060 | None:intergenic | 25.0% |
| !! | AAGATTAGATTTGACTTCAT+CGG | - | chr7.2:22119380-22119399 | MS.gene83429:intron | 25.0% |
| !! | GGAAGATTGATTTATGTTAA+TGG | - | chr7.2:22118541-22118560 | MS.gene83429:CDS | 25.0% |
| !! | TTTAGTTGTTGTTGTTCATA+GGG | + | chr7.2:22119015-22119034 | None:intergenic | 25.0% |
| !!! | GCAATCTTTTAATTTGTTTG+TGG | + | chr7.2:22119570-22119589 | None:intergenic | 25.0% |
| !!! | TTTATTTTTAACATCACCAG+AGG | + | chr7.2:22118126-22118145 | None:intergenic | 25.0% |
| !!! | TTTTAGTTGTTGTTGTTCAT+AGG | + | chr7.2:22119016-22119035 | None:intergenic | 25.0% |
| AAAAATACTGCCTAAAGGTA+TGG | + | chr7.2:22121224-22121243 | None:intergenic | 30.0% | |
| AAATGAACTACTCGTAATGA+AGG | - | chr7.2:22120028-22120047 | MS.gene83429:intron | 30.0% | |
| AAGGGAAATGTTTCATACTA+TGG | + | chr7.2:22120225-22120244 | None:intergenic | 30.0% | |
| AGAAAAGTTCATGTTAGGAA+AGG | + | chr7.2:22120368-22120387 | None:intergenic | 30.0% | |
| AGCTATACAAATCAGTGTAA+GGG | + | chr7.2:22118684-22118703 | None:intergenic | 30.0% | |
| AGGTACCTGAATATAATTTC+AGG | + | chr7.2:22119877-22119896 | None:intergenic | 30.0% | |
| AGTTTATTTGCCATACCTTT+AGG | - | chr7.2:22121211-22121230 | MS.gene83429:intron | 30.0% | |
| ATAATAGATTTGGATCGTCT+AGG | - | chr7.2:22121132-22121151 | MS.gene83429:intron | 30.0% | |
| ATCAAGAAATCAACAGCTTT+AGG | + | chr7.2:22120458-22120477 | None:intergenic | 30.0% | |
| CATACTATATACTGTACAAC+GGG | + | chr7.2:22121040-22121059 | None:intergenic | 30.0% | |
| CATGTAAACTTCACATAAGA+TGG | + | chr7.2:22118727-22118746 | None:intergenic | 30.0% | |
| CTAAATTGACAGAAGCTAAT+GGG | + | chr7.2:22118356-22118375 | None:intergenic | 30.0% | |
| CTTTGAACATTACAAATGCT+GGG | - | chr7.2:22118890-22118909 | MS.gene83429:intron | 30.0% | |
| CTTTGCTGACATAATAGATT+TGG | - | chr7.2:22121122-22121141 | MS.gene83429:intron | 30.0% | |
| TCAAGAAATCAACAGCTTTA+GGG | + | chr7.2:22120457-22120476 | None:intergenic | 30.0% | |
| TCAATTAATTCAAGCTCATC+AGG | - | chr7.2:22118160-22118179 | MS.gene83429:intron | 30.0% | |
| TCTTTGAACATTACAAATGC+TGG | - | chr7.2:22118889-22118908 | MS.gene83429:intron | 30.0% | |
| TGTAAACTTCACATAAGATG+GGG | + | chr7.2:22118725-22118744 | None:intergenic | 30.0% | |
| TTATAACTGTTAAGATGACC+GGG | + | chr7.2:22119526-22119545 | None:intergenic | 30.0% | |
| TTATATTCAGGTACCTGAAA+AGG | - | chr7.2:22119881-22119900 | MS.gene83429:CDS | 30.0% | |
| TTATGTTAATGGGGTTATTG+TGG | - | chr7.2:22118552-22118571 | MS.gene83429:CDS | 30.0% | |
| ! | AACATTTCCCTTTTTATGAG+TGG | - | chr7.2:22120233-22120252 | MS.gene83429:intron | 30.0% |
| ! | CAATTTTAAACTACCAGCAA+GGG | + | chr7.2:22118505-22118524 | None:intergenic | 30.0% |
| ! | CATTATAGTTGATACCTTGA+AGG | - | chr7.2:22120296-22120315 | MS.gene83429:CDS | 30.0% |
| ! | TATTGTTTTCTGTACTTTGC+AGG | - | chr7.2:22119604-22119623 | MS.gene83429:CDS | 30.0% |
| ! | TCAATTTTAAACTACCAGCA+AGG | + | chr7.2:22118506-22118525 | None:intergenic | 30.0% |
| ! | TGTAAATTATTATGGTGCCA+TGG | - | chr7.2:22118803-22118822 | MS.gene83429:intron | 30.0% |
| !! | GTTAATTTGCTGTTAATGCT+GGG | - | chr7.2:22120167-22120186 | MS.gene83429:intron | 30.0% |
| !! | TGAAAACTGTACTTGTTATC+TGG | - | chr7.2:22120545-22120564 | MS.gene83429:intron | 30.0% |
| !!! | TGGGGATATTGAAGTTTTTT+TGG | - | chr7.2:22118933-22118952 | MS.gene83429:intron | 30.0% |
| !!! | TTTTTTTAGGCTGGTTATCA+GGG | - | chr7.2:22121414-22121433 | MS.gene83429:intron | 30.0% |
| !!! | TTTTTTTTAGGCTGGTTATC+AGG | - | chr7.2:22121413-22121432 | MS.gene83429:intron | 30.0% |
| AAAAGTTACCCAAAACGCAT+TGG | + | chr7.2:22119946-22119965 | None:intergenic | 35.0% | |
| AAAGTTACCCAAAACGCATT+GGG | + | chr7.2:22119945-22119964 | None:intergenic | 35.0% | |
| AAAGTTGTACGATTTGTGTC+AGG | - | chr7.2:22120089-22120108 | MS.gene83429:intron | 35.0% | |
| AATATGGCTGTTAACTTTCC+TGG | - | chr7.2:22118830-22118849 | MS.gene83429:intron | 35.0% | |
| ACAGTTCGAATTTCTTCAAC+TGG | + | chr7.2:22118602-22118621 | None:intergenic | 35.0% | |
| AGAGAAGAGTGAAGAAATAG+AGG | + | chr7.2:22117924-22117943 | None:intergenic | 35.0% | |
| ATACAAATCAGTGTAAGGGT+AGG | + | chr7.2:22118680-22118699 | None:intergenic | 35.0% | |
| ATGATCAAATAAGAGAGGCA+TGG | - | chr7.2:22118913-22118932 | MS.gene83429:intron | 35.0% | |
| ATTAACCAACAAGAGTAGTG+AGG | + | chr7.2:22120153-22120172 | None:intergenic | 35.0% | |
| CAGAGAGGTGAATTACAAAA+TGG | + | chr7.2:22118195-22118214 | None:intergenic | 35.0% | |
| CAGCTATACAAATCAGTGTA+AGG | + | chr7.2:22118685-22118704 | None:intergenic | 35.0% | |
| CATGCAGTATATGATCAGAA+AGG | + | chr7.2:22119114-22119133 | None:intergenic | 35.0% | |
| CCTAAATTGACAGAAGCTAA+TGG | + | chr7.2:22118357-22118376 | None:intergenic | 35.0% | |
| TAAAAGACAAGATGAGAAGG+AGG | + | chr7.2:22119173-22119192 | None:intergenic | 35.0% | |
| TCGTCTAGGTTTCAATGTTA+AGG | - | chr7.2:22121146-22121165 | MS.gene83429:intron | 35.0% | |
| TCTTACTTTCTATCTTCTGC+AGG | + | chr7.2:22121474-22121493 | None:intergenic | 35.0% | |
| TGATTCGTGGTTTATGAATC+AGG | - | chr7.2:22118094-22118113 | MS.gene83429:CDS | 35.0% | |
| TGTTAATGCTGGGATATGTT+TGG | - | chr7.2:22120177-22120196 | MS.gene83429:intron | 35.0% | |
| TTAGAGATTAATACCGCTAC+TGG | + | chr7.2:22120853-22120872 | None:intergenic | 35.0% | |
| TTCACATAAGATGGGGAAAA+AGG | + | chr7.2:22118718-22118737 | None:intergenic | 35.0% | |
| TTGGTTCAATGCGTACAAAT+CGG | + | chr7.2:22120070-22120089 | None:intergenic | 35.0% | |
| ! | AAAACAAACTCTAGCCTTCA+AGG | + | chr7.2:22120313-22120332 | None:intergenic | 35.0% |
| ! | CATTTTGTAATTCACCTCTC+TGG | - | chr7.2:22118193-22118212 | MS.gene83429:intron | 35.0% |
| ! | CCATTAGCTTCTGTCAATTT+AGG | - | chr7.2:22118354-22118373 | MS.gene83429:intron | 35.0% |
| ! | GACACAAATCGTACAACTTT+TGG | + | chr7.2:22120089-22120108 | None:intergenic | 35.0% |
| ! | GATTTGACTTCATCGGAAAT+AGG | - | chr7.2:22119387-22119406 | MS.gene83429:intron | 35.0% |
| ! | TCCTAAATGTTCAGTGCTTT+TGG | - | chr7.2:22119640-22119659 | MS.gene83429:intron | 35.0% |
| ! | TGATCAAATAAGAGAGGCAT+GGG | - | chr7.2:22118914-22118933 | MS.gene83429:intron | 35.0% |
| ! | TTGTTGTTGTTCATAGGGAA+GGG | + | chr7.2:22119010-22119029 | None:intergenic | 35.0% |
| !! | AAATTATTATGGTGCCATGG+TGG | - | chr7.2:22118806-22118825 | MS.gene83429:intron | 35.0% |
| !! | GGTTAATTTGCTGTTAATGC+TGG | - | chr7.2:22120166-22120185 | MS.gene83429:intron | 35.0% |
| !! | TATTGACTTAGGCTTGTCAA+AGG | - | chr7.2:22119454-22119473 | MS.gene83429:CDS | 35.0% |
| AACAGAAACCTTCGAGAATG+TGG | + | chr7.2:22118654-22118673 | None:intergenic | 40.0% | |
| AAGTATGACGGTTATCCATC+AGG | - | chr7.2:22119207-22119226 | MS.gene83429:intron | 40.0% | |
| AAGTCAACCATAGATCCTGA+TGG | + | chr7.2:22119225-22119244 | None:intergenic | 40.0% | |
| AAGTCGCTCACTGCTAATAT+AGG | + | chr7.2:22119270-22119289 | None:intergenic | 40.0% | |
| AATGCTGGGATATGTTTGGA+AGG | - | chr7.2:22120181-22120200 | MS.gene83429:intron | 40.0% | |
| ACCAAATCAGTCCTATCTTC+AGG | + | chr7.2:22119674-22119693 | None:intergenic | 40.0% | |
| ATATACTGTACAACGGGCAA+GGG | + | chr7.2:22121034-22121053 | None:intergenic | 40.0% | |
| ATGCTGGGATATGTTTGGAA+GGG | - | chr7.2:22120182-22120201 | MS.gene83429:intron | 40.0% | |
| CCTAAGTCAATACTGTGTGA+TGG | + | chr7.2:22119446-22119465 | None:intergenic | 40.0% | |
| CTGGGATGATCAAATAAGAG+AGG | - | chr7.2:22118908-22118927 | MS.gene83429:intron | 40.0% | |
| CTTGCTCATTCCTGAAGTAA+TGG | + | chr7.2:22120675-22120694 | None:intergenic | 40.0% | |
| GACTTTGCATGTGATGCAAA+TGG | - | chr7.2:22119240-22119259 | MS.gene83429:intron | 40.0% | |
| GGTACCTGAAAAGGATAAAG+AGG | - | chr7.2:22119890-22119909 | MS.gene83429:CDS | 40.0% | |
| GTTAACCTCACTACTCTTGT+TGG | - | chr7.2:22120145-22120164 | MS.gene83429:intron | 40.0% | |
| GTTCGAATTTCTTCAACTGG+TGG | + | chr7.2:22118599-22118618 | None:intergenic | 40.0% | |
| TAGAAGCTAAAATCCCTTGC+TGG | - | chr7.2:22118489-22118508 | MS.gene83429:intron | 40.0% | |
| TATATACTGTACAACGGGCA+AGG | + | chr7.2:22121035-22121054 | None:intergenic | 40.0% | |
| TATATTAGCAGTGAGCGACT+TGG | - | chr7.2:22119269-22119288 | MS.gene83429:intron | 40.0% | |
| TCCTGAAGATAGGACTGATT+TGG | - | chr7.2:22119670-22119689 | MS.gene83429:intron | 40.0% | |
| TCGCACATGAACAAAGATCA+CGG | - | chr7.2:22120958-22120977 | MS.gene83429:intron | 40.0% | |
| TCTTCGACTTCAGAGTTTAC+CGG | - | chr7.2:22120778-22120797 | MS.gene83429:intron | 40.0% | |
| TGACTGAATTGATCATCTGC+AGG | - | chr7.2:22121095-22121114 | MS.gene83429:intron | 40.0% | |
| ! | AGTCAATACTGTGTGATGGA+TGG | + | chr7.2:22119442-22119461 | None:intergenic | 40.0% |
| ! | ATGAATCAGGTTGTTTCCTC+TGG | - | chr7.2:22118107-22118126 | MS.gene83429:intron | 40.0% |
| ! | ATGGCCTCTTTATCCTTTTC+AGG | + | chr7.2:22119897-22119916 | None:intergenic | 40.0% |
| ! | CTCGTAATGAAGGTTGACTT+TGG | - | chr7.2:22120038-22120057 | MS.gene83429:intron | 40.0% |
| ! | GATCAAATAAGAGAGGCATG+GGG | - | chr7.2:22118915-22118934 | MS.gene83429:intron | 40.0% |
| ! | GTTGTTGTTGTTCATAGGGA+AGG | + | chr7.2:22119011-22119030 | None:intergenic | 40.0% |
| ! | TGACTTTTGTTCATACCCCA+AGG | - | chr7.2:22118973-22118992 | MS.gene83429:intron | 40.0% |
| ! | TTTGACACGCAGAAGTATGA+CGG | - | chr7.2:22119195-22119214 | MS.gene83429:intron | 40.0% |
| !! | AAATAGAGGTACCTGAGTAG+TGG | + | chr7.2:22117910-22117929 | None:intergenic | 40.0% |
| !! | AAGGGTGTTTACAGTTCCTT+GGG | + | chr7.2:22118992-22119011 | None:intergenic | 40.0% |
| !! | ACTTATCTAGAAGGCACTTC+TGG | - | chr7.2:22118220-22118239 | MS.gene83429:intron | 40.0% |
| !! | AGCTGTTGATTTCTTGATGC+TGG | - | chr7.2:22120460-22120479 | MS.gene83429:intron | 40.0% |
| !! | CCATCACACAGTATTGACTT+AGG | - | chr7.2:22119443-22119462 | MS.gene83429:CDS | 40.0% |
| !! | CTTATCTAGAAGGCACTTCT+GGG | - | chr7.2:22118221-22118240 | MS.gene83429:intron | 40.0% |
| !! | GATTTGGTGATCACTATCCA+CGG | - | chr7.2:22119686-22119705 | MS.gene83429:intron | 40.0% |
| !! | GCCAAAAGCACTGAACATTT+AGG | + | chr7.2:22119644-22119663 | None:intergenic | 40.0% |
| !! | TCTGGAAGCACTTATCTAGA+AGG | - | chr7.2:22118211-22118230 | MS.gene83429:intron | 40.0% |
| !! | TGCTGATTTGTACTCATCTC+CGG | + | chr7.2:22120800-22120819 | None:intergenic | 40.0% |
| !!! | GAAGGCTAGAGTTTGTTTTG+CGG | - | chr7.2:22120314-22120333 | MS.gene83429:intron | 40.0% |
| CGGTTATCCATCAGGATCTA+TGG | - | chr7.2:22119215-22119234 | MS.gene83429:intron | 45.0% | |
| CTAGATAAGTGCTTCCAGAG+AGG | + | chr7.2:22118210-22118229 | None:intergenic | 45.0% | |
| CTGAATTGATCATCTGCAGG+TGG | - | chr7.2:22121098-22121117 | MS.gene83429:intron | 45.0% | |
| CTGTACTTTGCAGGACTTAG+CGG | - | chr7.2:22119613-22119632 | MS.gene83429:CDS | 45.0% | |
| GCTTGGAAAACTGAGCAATG+GGG | + | chr7.2:22120831-22120850 | None:intergenic | 45.0% | |
| GGCTTGGAAAACTGAGCAAT+GGG | + | chr7.2:22120832-22120851 | None:intergenic | 45.0% | |
| GTTAATGGGGTTATTGTGGC+AGG | - | chr7.2:22118556-22118575 | MS.gene83429:CDS | 45.0% | |
| TAACAGCCATATTGCCACCA+TGG | + | chr7.2:22118823-22118842 | None:intergenic | 45.0% | |
| TATACTGTACAACGGGCAAG+GGG | + | chr7.2:22121033-22121052 | None:intergenic | 45.0% | |
| TCCTGATCCTAACAAAGCTG+TGG | + | chr7.2:22120120-22120139 | None:intergenic | 45.0% | |
| TCCTTGATCGTAGTCTACGT+GGG | - | chr7.2:22118621-22118640 | MS.gene83429:intron | 45.0% | |
| TGGCTAGAGATCCTGAAGAT+AGG | - | chr7.2:22119660-22119679 | MS.gene83429:intron | 45.0% | |
| TTACAAAGATAGCGTCACCG+TGG | + | chr7.2:22119706-22119725 | None:intergenic | 45.0% | |
| TTCTATCTTCTGCAGGTCGA+GGG | + | chr7.2:22121467-22121486 | None:intergenic | 45.0% | |
| TTCTTCCCAATCCACTACTC+AGG | - | chr7.2:22117896-22117915 | MS.gene83429:CDS | 45.0% | |
| TTGATTTCTTGATGCTGGCG+TGG | - | chr7.2:22120465-22120484 | MS.gene83429:intron | 45.0% | |
| TTTCTATCTTCTGCAGGTCG+AGG | + | chr7.2:22121468-22121487 | None:intergenic | 45.0% | |
| ! | AGGGTGTTTACAGTTCCTTG+GGG | + | chr7.2:22118991-22119010 | None:intergenic | 45.0% |
| ! | CGACTTGGCAGTTCATTCAA+AGG | - | chr7.2:22119284-22119303 | MS.gene83429:intron | 45.0% |
| ! | GAGACATCCCAATGCGTTTT+GGG | - | chr7.2:22119935-22119954 | MS.gene83429:intron | 45.0% |
| ! | GATTAATACCGCTACTGGCT+TGG | + | chr7.2:22120848-22120867 | None:intergenic | 45.0% |
| ! | TCAGTTTTCCAAGCCAGTAG+CGG | - | chr7.2:22120837-22120856 | MS.gene83429:intron | 45.0% |
| ! | TGGCTTGGAAAACTGAGCAA+TGG | + | chr7.2:22120833-22120852 | None:intergenic | 45.0% |
| !! | ACAGCTTTGTTAGGATCAGG+AGG | - | chr7.2:22120119-22120138 | MS.gene83429:intron | 45.0% |
| !! | AGGTACCTGAGTAGTGGATT+GGG | + | chr7.2:22117904-22117923 | None:intergenic | 45.0% |
| !! | GAAGGGTGTTTACAGTTCCT+TGG | + | chr7.2:22118993-22119012 | None:intergenic | 45.0% |
| !!! | TAAAATAATCATTTTTTTTT+AGG | - | chr7.2:22121401-22121420 | MS.gene83429:CDS | 5.0% |
| !!! | TCAATTAAAATATTTTTTAT+TGG | - | chr7.2:22120630-22120649 | MS.gene83429:intron | 5.0% |
| AGTGAAAGCTACTCCAGACC+AGG | + | chr7.2:22118851-22118870 | None:intergenic | 50.0% | |
| CGCCAAATATGCAGCTCGTA+TGG | + | chr7.2:22119916-22119935 | None:intergenic | 50.0% | |
| CTAAAGCGATTGTGCAGCAC+TGG | - | chr7.2:22120989-22121008 | MS.gene83429:intron | 50.0% | |
| CTGTGTGGATGCTGTAAAGC+AGG | - | chr7.2:22120337-22120356 | MS.gene83429:intron | 50.0% | |
| GGCCATACGAGCTGCATATT+TGG | - | chr7.2:22119911-22119930 | MS.gene83429:intron | 50.0% | |
| GGCTGTTAACTTTCCTGGTC+TGG | - | chr7.2:22118835-22118854 | MS.gene83429:intron | 50.0% | |
| GTCCTTGATCGTAGTCTACG+TGG | - | chr7.2:22118620-22118639 | MS.gene83429:intron | 50.0% | |
| TCATGTCTTCAACCTGCTCC+CGG | - | chr7.2:22119505-22119524 | MS.gene83429:intron | 50.0% | |
| TCCCACGTAGACTACGATCA+AGG | + | chr7.2:22118625-22118644 | None:intergenic | 50.0% | |
| ! | CGAGACATCCCAATGCGTTT+TGG | - | chr7.2:22119934-22119953 | MS.gene83429:intron | 50.0% |
| ! | GGTCTGGAGTAGCTTTCACT+AGG | - | chr7.2:22118851-22118870 | MS.gene83429:intron | 50.0% |
| !! | ATGGTGCCATGGTGGCAATA+TGG | - | chr7.2:22118814-22118833 | MS.gene83429:intron | 50.0% |
| !! | GAGGTACCTGAGTAGTGGAT+TGG | + | chr7.2:22117905-22117924 | None:intergenic | 50.0% |
| !! | GCCACAGCTTTGTTAGGATC+AGG | - | chr7.2:22120116-22120135 | MS.gene83429:intron | 50.0% |
| !! | GGTGTTGCCACAGCTTTGTT+AGG | - | chr7.2:22120110-22120129 | MS.gene83429:intron | 50.0% |
| !!! | GAGTTTGTTTTGCGGCTGTG+TGG | - | chr7.2:22120322-22120341 | MS.gene83429:intron | 50.0% |
| AAGGGGACATACCGGAACTG+AGG | + | chr7.2:22121016-22121035 | None:intergenic | 55.0% | |
| CAACTTGAGGCTTGGCAGCT+TGG | + | chr7.2:22121630-22121649 | None:intergenic | 55.0% | |
| CTGTTAAGATGACCGGGAGC+AGG | + | chr7.2:22119520-22119539 | None:intergenic | 55.0% | |
| GACGCTCTCCACATTCTCGA+AGG | - | chr7.2:22118643-22118662 | MS.gene83429:intron | 55.0% | |
| TCTTCTGCAGGTCGAGGGAA+AGG | + | chr7.2:22121462-22121481 | None:intergenic | 55.0% | |
| CAACGGGCAAGGGGACATAC+CGG | + | chr7.2:22121024-22121043 | None:intergenic | 60.0% | |
| ! | CAGGTCGAGGGAAAGGCACA+CGG | + | chr7.2:22121455-22121474 | None:intergenic | 60.0% |
| ! | GCAGCACTGGACCTCAGTTC+CGG | - | chr7.2:22121002-22121021 | MS.gene83429:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 22117885 | 22121654 | 22117885 | ID=MS.gene83429 |
| chr7.2 | mRNA | 22117885 | 22121654 | 22117885 | ID=MS.gene83429.t1;Parent=MS.gene83429 |
| chr7.2 | exon | 22121622 | 22121654 | 22121622 | ID=MS.gene83429.t1.exon1;Parent=MS.gene83429.t1 |
| chr7.2 | CDS | 22121622 | 22121654 | 22121622 | ID=cds.MS.gene83429.t1;Parent=MS.gene83429.t1 |
| chr7.2 | exon | 22121358 | 22121423 | 22121358 | ID=MS.gene83429.t1.exon2;Parent=MS.gene83429.t1 |
| chr7.2 | CDS | 22121358 | 22121423 | 22121358 | ID=cds.MS.gene83429.t1;Parent=MS.gene83429.t1 |
| chr7.2 | exon | 22120875 | 22120961 | 22120875 | ID=MS.gene83429.t1.exon3;Parent=MS.gene83429.t1 |
| chr7.2 | CDS | 22120875 | 22120961 | 22120875 | ID=cds.MS.gene83429.t1;Parent=MS.gene83429.t1 |
| chr7.2 | exon | 22120234 | 22120332 | 22120234 | ID=MS.gene83429.t1.exon4;Parent=MS.gene83429.t1 |
| chr7.2 | CDS | 22120234 | 22120332 | 22120234 | ID=cds.MS.gene83429.t1;Parent=MS.gene83429.t1 |
| chr7.2 | exon | 22119818 | 22119913 | 22119818 | ID=MS.gene83429.t1.exon5;Parent=MS.gene83429.t1 |
| chr7.2 | CDS | 22119818 | 22119913 | 22119818 | ID=cds.MS.gene83429.t1;Parent=MS.gene83429.t1 |
| chr7.2 | exon | 22119583 | 22119648 | 22119583 | ID=MS.gene83429.t1.exon6;Parent=MS.gene83429.t1 |
| chr7.2 | CDS | 22119583 | 22119648 | 22119583 | ID=cds.MS.gene83429.t1;Parent=MS.gene83429.t1 |
| chr7.2 | exon | 22119399 | 22119489 | 22119399 | ID=MS.gene83429.t1.exon7;Parent=MS.gene83429.t1 |
| chr7.2 | CDS | 22119399 | 22119489 | 22119399 | ID=cds.MS.gene83429.t1;Parent=MS.gene83429.t1 |
| chr7.2 | exon | 22118681 | 22118748 | 22118681 | ID=MS.gene83429.t1.exon8;Parent=MS.gene83429.t1 |
| chr7.2 | CDS | 22118681 | 22118748 | 22118681 | ID=cds.MS.gene83429.t1;Parent=MS.gene83429.t1 |
| chr7.2 | exon | 22118516 | 22118581 | 22118516 | ID=MS.gene83429.t1.exon9;Parent=MS.gene83429.t1 |
| chr7.2 | CDS | 22118516 | 22118581 | 22118516 | ID=cds.MS.gene83429.t1;Parent=MS.gene83429.t1 |
| chr7.2 | exon | 22118372 | 22118422 | 22118372 | ID=MS.gene83429.t1.exon10;Parent=MS.gene83429.t1 |
| chr7.2 | CDS | 22118372 | 22118422 | 22118372 | ID=cds.MS.gene83429.t1;Parent=MS.gene83429.t1 |
| chr7.2 | exon | 22118052 | 22118116 | 22118052 | ID=MS.gene83429.t1.exon11;Parent=MS.gene83429.t1 |
| chr7.2 | CDS | 22118052 | 22118116 | 22118052 | ID=cds.MS.gene83429.t1;Parent=MS.gene83429.t1 |
| chr7.2 | exon | 22117885 | 22117942 | 22117885 | ID=MS.gene83429.t1.exon12;Parent=MS.gene83429.t1 |
| chr7.2 | CDS | 22117885 | 22117942 | 22117885 | ID=cds.MS.gene83429.t1;Parent=MS.gene83429.t1 |
| Gene Sequence |
| Protein sequence |
