Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83458.t1 | XP_024640893.1 | 99.3 | 401 | 3 | 0 | 1 | 401 | 1 | 401 | 8.90E-238 | 832.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83458.t1 | Q6DBP4 | 68.3 | 397 | 124 | 1 | 5 | 401 | 3 | 397 | 1.3e-168 | 594.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83458.t1 | A0A396HMS2 | 99.2 | 391 | 3 | 0 | 1 | 391 | 1 | 391 | 2.0e-231 | 810.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054486 | MS.gene83458 | 0.814859 | 1.24E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83458.t1 | MTR_8g072000 | 70.886 | 395 | 112 | 2 | 1 | 394 | 1 | 393 | 0.0 | 602 |
| MS.gene83458.t1 | MTR_8g072000 | 70.886 | 395 | 112 | 2 | 1 | 394 | 32 | 424 | 0.0 | 601 |
| MS.gene83458.t1 | MTR_8g072010 | 66.497 | 394 | 130 | 1 | 1 | 394 | 1 | 392 | 0.0 | 579 |
| MS.gene83458.t1 | MTR_5g042650 | 69.521 | 397 | 117 | 1 | 1 | 397 | 1 | 393 | 0.0 | 575 |
| MS.gene83458.t1 | MTR_7g110900 | 54.098 | 366 | 166 | 1 | 29 | 394 | 52 | 415 | 3.55e-157 | 449 |
| MS.gene83458.t1 | MTR_7g110900 | 54.247 | 365 | 165 | 1 | 29 | 393 | 52 | 414 | 9.45e-157 | 450 |
| MS.gene83458.t1 | MTR_1g085620 | 54.247 | 365 | 165 | 1 | 29 | 393 | 40 | 402 | 2.54e-155 | 444 |
| MS.gene83458.t1 | MTR_7g111280 | 53.973 | 365 | 166 | 1 | 29 | 393 | 56 | 418 | 2.60e-151 | 434 |
| MS.gene83458.t1 | MTR_4g124320 | 53.699 | 365 | 167 | 1 | 29 | 393 | 58 | 420 | 3.53e-149 | 429 |
| MS.gene83458.t1 | MTR_1g085070 | 52.406 | 374 | 160 | 3 | 22 | 394 | 46 | 402 | 4.86e-147 | 423 |
| MS.gene83458.t1 | MTR_1g101000 | 52.291 | 371 | 174 | 2 | 28 | 395 | 38 | 408 | 3.02e-145 | 419 |
| MS.gene83458.t1 | MTR_1g101000 | 52.291 | 371 | 174 | 2 | 28 | 395 | 38 | 408 | 4.81e-145 | 419 |
| MS.gene83458.t1 | MTR_1g101020 | 51.359 | 368 | 176 | 2 | 28 | 392 | 38 | 405 | 7.00e-142 | 410 |
| MS.gene83458.t1 | MTR_7g060760 | 46.575 | 365 | 191 | 1 | 29 | 393 | 57 | 417 | 7.48e-133 | 387 |
| MS.gene83458.t1 | MTR_1g101000 | 52.836 | 335 | 155 | 2 | 28 | 359 | 38 | 372 | 2.58e-129 | 377 |
| MS.gene83458.t1 | MTR_1g085620 | 52.843 | 299 | 139 | 1 | 95 | 393 | 1 | 297 | 1.56e-122 | 357 |
| MS.gene83458.t1 | MTR_4g124320 | 57.769 | 251 | 104 | 1 | 29 | 279 | 58 | 306 | 5.76e-108 | 321 |
| MS.gene83458.t1 | MTR_7g006750 | 57.025 | 121 | 46 | 1 | 149 | 263 | 440 | 560 | 2.31e-38 | 147 |
| MS.gene83458.t1 | MTR_1g036590 | 53.165 | 79 | 37 | 0 | 213 | 291 | 272 | 350 | 2.99e-20 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83458.t1 | AT4G19420 | 68.262 | 397 | 124 | 1 | 5 | 401 | 3 | 397 | 0.0 | 595 |
| MS.gene83458.t1 | AT4G19420 | 68.262 | 397 | 124 | 1 | 5 | 401 | 3 | 397 | 0.0 | 595 |
| MS.gene83458.t1 | AT4G19420 | 62.731 | 432 | 124 | 2 | 5 | 401 | 3 | 432 | 0.0 | 579 |
| MS.gene83458.t1 | AT4G19410 | 60.428 | 374 | 147 | 1 | 16 | 388 | 11 | 384 | 4.61e-179 | 504 |
| MS.gene83458.t1 | AT5G45280 | 57.292 | 384 | 158 | 3 | 9 | 388 | 3 | 384 | 1.01e-173 | 490 |
| MS.gene83458.t1 | AT4G19410 | 60.224 | 357 | 142 | 0 | 16 | 372 | 11 | 367 | 1.63e-168 | 482 |
| MS.gene83458.t1 | AT5G26670 | 56.011 | 366 | 159 | 1 | 29 | 394 | 53 | 416 | 3.52e-158 | 452 |
| MS.gene83458.t1 | AT3G62060 | 54.933 | 375 | 166 | 2 | 21 | 394 | 47 | 419 | 3.87e-157 | 449 |
| MS.gene83458.t1 | AT3G62060 | 54.667 | 375 | 167 | 2 | 21 | 394 | 47 | 419 | 3.61e-156 | 448 |
| MS.gene83458.t1 | AT3G05910 | 54.918 | 366 | 162 | 2 | 29 | 394 | 53 | 415 | 2.96e-154 | 442 |
| MS.gene83458.t1 | AT2G46930 | 53.005 | 366 | 170 | 1 | 29 | 394 | 53 | 416 | 2.28e-153 | 439 |
| MS.gene83458.t1 | AT1G57590 | 54.098 | 366 | 166 | 1 | 29 | 394 | 80 | 443 | 3.24e-152 | 438 |
| MS.gene83458.t1 | AT5G45280 | 59.672 | 305 | 118 | 2 | 9 | 310 | 3 | 305 | 6.62e-141 | 406 |
| MS.gene83458.t1 | AT5G23870 | 47.236 | 398 | 201 | 5 | 4 | 392 | 5 | 402 | 6.99e-137 | 398 |
| MS.gene83458.t1 | AT5G23870 | 47.236 | 398 | 201 | 5 | 4 | 392 | 5 | 402 | 6.99e-137 | 398 |
| MS.gene83458.t1 | AT5G23870 | 47.236 | 398 | 201 | 5 | 4 | 392 | 5 | 402 | 8.79e-137 | 398 |
| MS.gene83458.t1 | AT5G23870 | 47.236 | 398 | 201 | 5 | 4 | 392 | 5 | 402 | 1.17e-136 | 398 |
| MS.gene83458.t1 | AT1G09550 | 50.872 | 344 | 166 | 2 | 29 | 372 | 42 | 382 | 1.39e-132 | 386 |
| MS.gene83458.t1 | AT3G09410 | 47.814 | 366 | 190 | 1 | 29 | 393 | 61 | 426 | 1.63e-132 | 387 |
| MS.gene83458.t1 | AT4G19420 | 70.204 | 245 | 71 | 1 | 5 | 249 | 3 | 245 | 5.42e-129 | 373 |
| MS.gene83458.t1 | AT5G26670 | 55.000 | 300 | 133 | 1 | 95 | 394 | 1 | 298 | 3.66e-125 | 363 |
| MS.gene83458.t1 | AT5G26670 | 55.000 | 300 | 133 | 1 | 95 | 394 | 1 | 298 | 3.66e-125 | 363 |
| MS.gene83458.t1 | AT5G26670 | 55.000 | 300 | 133 | 1 | 95 | 394 | 1 | 298 | 3.66e-125 | 363 |
| MS.gene83458.t1 | AT3G09405 | 44.321 | 361 | 198 | 2 | 29 | 388 | 51 | 409 | 3.48e-117 | 347 |
| MS.gene83458.t1 | AT3G09410 | 47.112 | 329 | 173 | 1 | 29 | 356 | 61 | 389 | 3.99e-115 | 342 |
| MS.gene83458.t1 | AT3G05910 | 58.065 | 248 | 101 | 2 | 29 | 276 | 53 | 297 | 3.17e-104 | 311 |
| MS.gene83458.t1 | AT3G09405 | 44.040 | 302 | 166 | 2 | 88 | 388 | 3 | 302 | 2.51e-96 | 290 |
Find 75 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGTTAAAGTTAAATATTC+TGG | 0.238682 | 5.4:-17271297 | MS.gene83458:CDS |
| TACCATTTAGATAGGGGATT+TGG | 0.285592 | 5.4:-17270792 | MS.gene83458:CDS |
| TTCCAAATCCCCTATCTAAA+TGG | 0.292952 | 5.4:+17270790 | None:intergenic |
| GGTAAGGACAATCTATCTTA+TGG | 0.307887 | 5.4:+17268670 | None:intergenic |
| TGCAGTTATGGAAGATTTGC+TGG | 0.318102 | 5.4:-17270206 | MS.gene83458:CDS |
| CACCAGCTTACCATTTAGAT+AGG | 0.372207 | 5.4:-17270800 | MS.gene83458:CDS |
| ACCGATACGTCTTGCGAGAA+AGG | 0.388612 | 5.4:+17270593 | None:intergenic |
| CATTTCACTTTAGCTCCTCT+TGG | 0.394413 | 5.4:+17270006 | None:intergenic |
| GTTATTTAAAATTCCTGAAA+AGG | 0.396090 | 5.4:+17270537 | None:intergenic |
| AAATATTCTGGTGTTTGTAC+TGG | 0.409501 | 5.4:-17271285 | MS.gene83458:CDS |
| AGAGTCTATGAACATTCCTT+TGG | 0.414577 | 5.4:+17269027 | None:intergenic |
| GTTAACAGAAGGGATGTATC+TGG | 0.420364 | 5.4:-17269863 | MS.gene83458:intron |
| ATGAAATGAATCTATACTCC+TGG | 0.429111 | 5.4:+17268600 | None:intergenic |
| TTAGATAGGGGATTTGGAAC+AGG | 0.432017 | 5.4:-17270786 | MS.gene83458:CDS |
| CCCCTATCTAAATGGTAAGC+TGG | 0.447683 | 5.4:+17270798 | None:intergenic |
| AGTCTTGAAGTGCATGATCT+AGG | 0.448651 | 5.4:+17269626 | None:intergenic |
| CTACAATTGGAACAGAATCA+AGG | 0.450624 | 5.4:-17270413 | MS.gene83458:CDS |
| GCCTTTCTCGCAAGACGTAT+CGG | 0.457301 | 5.4:-17270594 | MS.gene83458:CDS |
| ATGTTCCTTGCATTTCAGTT+TGG | 0.458452 | 5.4:+17268990 | None:intergenic |
| CTACAACAGGCTATTATCTC+AGG | 0.458717 | 5.4:-17270087 | MS.gene83458:intron |
| GTTAGGTTCATCTAAGCATA+TGG | 0.460202 | 5.4:-17270572 | MS.gene83458:CDS |
| CTCAAGAGTGCGGTATCAAA+AGG | 0.465683 | 5.4:-17271221 | MS.gene83458:CDS |
| TAGTAGTGACTCTCCATCAT+TGG | 0.466285 | 5.4:-17268963 | MS.gene83458:CDS |
| CAGTTGGTTAGTTCAATTTG+AGG | 0.473805 | 5.4:-17270757 | MS.gene83458:intron |
| GAATTGTAGATTTCTACAAT+TGG | 0.474249 | 5.4:-17270426 | MS.gene83458:intron |
| ATTTGTGATATAACATATTG+AGG | 0.475401 | 5.4:+17269488 | None:intergenic |
| TCTCGCAAGACGTATCGGTT+AGG | 0.476074 | 5.4:-17270589 | MS.gene83458:CDS |
| ATCTCAGGATGTTCAGCTGG+TGG | 0.479723 | 5.4:-17270072 | MS.gene83458:CDS |
| GCCGCATTCACAAGGAAGAT+TGG | 0.480970 | 5.4:+17269458 | None:intergenic |
| CTTACCGTCTTGGCCAATGA+TGG | 0.481283 | 5.4:+17268950 | None:intergenic |
| ATGGAAGATTTGCTGGCAAA+GGG | 0.486962 | 5.4:-17270199 | MS.gene83458:CDS |
| GAATATTTAACTTTAACCAT+TGG | 0.493963 | 5.4:+17271300 | None:intergenic |
| GCTCACAAACTTACCAGCCT+TGG | 0.497601 | 5.4:+17269599 | None:intergenic |
| TTTGTGATATAACATATTGA+GGG | 0.498922 | 5.4:+17269489 | None:intergenic |
| ATTATCTCAGGATGTTCAGC+TGG | 0.500171 | 5.4:-17270075 | MS.gene83458:CDS |
| ACCAGCTTACCATTTAGATA+GGG | 0.500291 | 5.4:-17270799 | MS.gene83458:CDS |
| CTGCTGATCCTCGTGGACAC+TGG | 0.507401 | 5.4:-17269257 | MS.gene83458:CDS |
| AGTGTGGCTTCTTACCGTCT+TGG | 0.513249 | 5.4:+17268940 | None:intergenic |
| TTCAAGACTCAGTCCAAGGC+TGG | 0.518055 | 5.4:-17269612 | MS.gene83458:intron |
| TTACGCGTTGATAAAGTAAC+CGG | 0.521826 | 5.4:+17269972 | None:intergenic |
| TTGCAAAAGCTGTAGCAGAC+TGG | 0.525590 | 5.4:-17268713 | MS.gene83458:CDS |
| CTCTCCATCATTGGCCAAGA+CGG | 0.529374 | 5.4:-17268954 | MS.gene83458:intron |
| TATGGAAGATTTGCTGGCAA+AGG | 0.533137 | 5.4:-17270200 | MS.gene83458:CDS |
| TTAAGGGCATTGACTGCTGT+AGG | 0.537327 | 5.4:-17269061 | MS.gene83458:CDS |
| CCACGAGGATCAGCAGCTCC+CGG | 0.537672 | 5.4:+17269264 | None:intergenic |
| AACAGGAGACAGTTTAATCC+AGG | 0.539572 | 5.4:-17270517 | MS.gene83458:intron |
| CCAGCTTACCATTTAGATAG+GGG | 0.540002 | 5.4:-17270798 | MS.gene83458:CDS |
| TTGGAACAGGAATTAACAGT+TGG | 0.547070 | 5.4:-17270773 | MS.gene83458:CDS |
| ACCAATCTTCCTTGTGAATG+CGG | 0.548127 | 5.4:-17269459 | MS.gene83458:CDS |
| GTGAAATGCCTCTCAGATGC+CGG | 0.552096 | 5.4:-17269991 | MS.gene83458:CDS |
| TGAATGCGGCATACGACTCA+TGG | 0.554322 | 5.4:-17269445 | MS.gene83458:CDS |
| TGAAATGAATCTATACTCCT+GGG | 0.560580 | 5.4:+17268601 | None:intergenic |
| CAACTCGGATTGCAAGGGTA+AGG | 0.564647 | 5.4:+17268654 | None:intergenic |
| GCACTCTTGAGTAAAGTGAT+TGG | 0.568437 | 5.4:+17271233 | None:intergenic |
| TGCGGCATACGACTCATGGC+AGG | 0.571149 | 5.4:-17269441 | MS.gene83458:intron |
| TCTCAGGATGTTCAGCTGGT+GGG | 0.573812 | 5.4:-17270071 | MS.gene83458:CDS |
| ATTGACTGCTTCCACATCAC+CGG | 0.575655 | 5.4:+17270363 | None:intergenic |
| GTTTGTACTGGTATTGCTGA+AGG | 0.583325 | 5.4:-17271273 | MS.gene83458:CDS |
| GTAACTAAGTTGCACTTCAG+AGG | 0.593861 | 5.4:-17270244 | MS.gene83458:CDS |
| AGTCGTATGCCGCATTCACA+AGG | 0.594968 | 5.4:+17269450 | None:intergenic |
| CACTGCCAAACTGAAATGCA+AGG | 0.595547 | 5.4:-17268995 | MS.gene83458:CDS |
| GTATTGCTGAAGGTAGAAGC+TGG | 0.595965 | 5.4:-17271263 | MS.gene83458:CDS |
| CTATCTAAATGGTAAGCTGG+TGG | 0.599663 | 5.4:+17270801 | None:intergenic |
| AAACTGAAATGCAAGGAACA+TGG | 0.604137 | 5.4:-17268988 | MS.gene83458:CDS |
| GCACTTCAAGACTCAGTCCA+AGG | 0.614843 | 5.4:-17269616 | MS.gene83458:CDS |
| AGAACACAAGATTAAGCCAA+TGG | 0.614911 | 5.4:-17271316 | MS.gene83458:CDS |
| GTAGGAAACTCTACATCCAA+AGG | 0.616333 | 5.4:-17269043 | MS.gene83458:CDS |
| CCGGGAGCTGCTGATCCTCG+TGG | 0.625720 | 5.4:-17269264 | MS.gene83458:CDS |
| AGTGCGGTATCAAAAGGAGC+CGG | 0.625776 | 5.4:-17271215 | MS.gene83458:intron |
| AATCAACTAGATCTAATGCA+AGG | 0.629815 | 5.4:-17269198 | MS.gene83458:intron |
| ATCAAGGTTAGATATTGTGA+CGG | 0.630613 | 5.4:-17270397 | MS.gene83458:CDS |
| CAGCTGTGCCAGTGTCCACG+AGG | 0.670610 | 5.4:+17269249 | None:intergenic |
| TTTGAACCACAAGAAAACCC+AGG | 0.673553 | 5.4:-17268618 | MS.gene83458:CDS |
| TAAAGTAACCGGCATCTGAG+AGG | 0.680860 | 5.4:+17269983 | None:intergenic |
| AATCACTTTACTCAAGAGTG+CGG | 0.706525 | 5.4:-17271231 | MS.gene83458:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATTATTAGAACAAAAAT+TGG | + | chr5.4:17269482-17269501 | None:intergenic | 15.0% |
| !! | CAATTATTAGAACAAAAATT+GGG | + | chr5.4:17269481-17269500 | None:intergenic | 15.0% |
| !! | GAATCAAATACAATTATTTA+AGG | + | chr5.4:17270037-17270056 | None:intergenic | 15.0% |
| !!! | ATTTCAATTTCAATTTTGTT+AGG | - | chr5.4:17269284-17269303 | MS.gene83458:CDS | 15.0% |
| !!! | TAAGTTTTAACAAAATTCAA+AGG | - | chr5.4:17269595-17269614 | MS.gene83458:intron | 15.0% |
| !!! | TTTCAATTTCAATTTTGTTA+GGG | - | chr5.4:17269285-17269304 | MS.gene83458:CDS | 15.0% |
| !! | ATGGTTAAAGTTAAATATTC+TGG | - | chr5.4:17268634-17268653 | MS.gene83458:CDS | 20.0% |
| !! | ATTTGTGATATAACATATTG+AGG | + | chr5.4:17270446-17270465 | None:intergenic | 20.0% |
| !! | TCAAAACACTAATTTATTGA+TGG | + | chr5.4:17269221-17269240 | None:intergenic | 20.0% |
| !! | TTTGTGATATAACATATTGA+GGG | + | chr5.4:17270445-17270464 | None:intergenic | 20.0% |
| !!! | AAAATCAGACTAGAATATTT+TGG | + | chr5.4:17270244-17270263 | None:intergenic | 20.0% |
| !!! | AAAGTATCATTCAAATGAAA+AGG | + | chr5.4:17270197-17270216 | None:intergenic | 20.0% |
| !!! | AAGAATTTTTAATGCAGTTA+TGG | - | chr5.4:17269713-17269732 | MS.gene83458:intron | 20.0% |
| !!! | CTTTAGAACACAATTTTTAA+GGG | - | chr5.4:17270854-17270873 | MS.gene83458:intron | 20.0% |
| !!! | GAATATTTAACTTTAACCAT+TGG | + | chr5.4:17268634-17268653 | None:intergenic | 20.0% |
| !!! | GTTATTTAAAATTCCTGAAA+AGG | + | chr5.4:17269397-17269416 | None:intergenic | 20.0% |
| !!! | TGAATTTTGTTAAAACTTAC+TGG | + | chr5.4:17269594-17269613 | None:intergenic | 20.0% |
| !!! | TTGATTTTTATGACAATTCT+TGG | - | chr5.4:17269237-17269256 | MS.gene83458:CDS | 20.0% |
| !!! | TTTCAGGAATTTTAAATAAC+AGG | - | chr5.4:17269397-17269416 | MS.gene83458:intron | 20.0% |
| ! | AAAAAAGGAATTGCAAATGT+AGG | + | chr5.4:17270372-17270391 | None:intergenic | 25.0% |
| ! | AAATTTCATCTGAAAAGAAG+AGG | + | chr5.4:17269641-17269660 | None:intergenic | 25.0% |
| ! | AATAATATGACGTGTAAATC+AGG | - | chr5.4:17269665-17269684 | MS.gene83458:intron | 25.0% |
| ! | AATGCATAAAGTCAGTTATT+CGG | + | chr5.4:17271178-17271197 | None:intergenic | 25.0% |
| ! | AATTTCATCTGAAAAGAAGA+GGG | + | chr5.4:17269640-17269659 | None:intergenic | 25.0% |
| ! | ACACAAAATAGTTATATGCT+TGG | + | chr5.4:17271123-17271142 | None:intergenic | 25.0% |
| ! | ATAAATAACAGCACCAAAAA+AGG | + | chr5.4:17270387-17270406 | None:intergenic | 25.0% |
| ! | ATATCCAGGTTTCATTAATT+TGG | + | chr5.4:17270166-17270185 | None:intergenic | 25.0% |
| ! | GAATTGTAGATTTCTACAAT+TGG | - | chr5.4:17269505-17269524 | MS.gene83458:intron | 25.0% |
| ! | TATCCAGGTTTCATTAATTT+GGG | + | chr5.4:17270165-17270184 | None:intergenic | 25.0% |
| ! | TTAAGGAACTTCAAAAGATT+AGG | + | chr5.4:17270020-17270039 | None:intergenic | 25.0% |
| ! | TTATGGAAAAAAGAATAGTG+TGG | + | chr5.4:17271010-17271029 | None:intergenic | 25.0% |
| !! | AATATGTTTCTGTTAACAGA+AGG | - | chr5.4:17270057-17270076 | MS.gene83458:CDS | 25.0% |
| !! | AATTTCAATTTTGTTAGGGA+GGG | - | chr5.4:17269289-17269308 | MS.gene83458:intron | 25.0% |
| !! | ATATGTTTCTGTTAACAGAA+GGG | - | chr5.4:17270058-17270077 | MS.gene83458:CDS | 25.0% |
| !! | CTTGGAAGATTCTATATTTT+TGG | - | chr5.4:17269255-17269274 | MS.gene83458:CDS | 25.0% |
| !! | GGATATCTCATGTTATTTAA+AGG | + | chr5.4:17270581-17270600 | None:intergenic | 25.0% |
| !! | TTTTCCATAATCTTTTTCCA+CGG | - | chr5.4:17271020-17271039 | MS.gene83458:intron | 25.0% |
| !!! | GCTTTAGAACACAATTTTTA+AGG | - | chr5.4:17270853-17270872 | MS.gene83458:intron | 25.0% |
| !!! | TAAATTTTGTGCAGTTTGTT+TGG | - | chr5.4:17269099-17269118 | MS.gene83458:intron | 25.0% |
| !!! | TACATTTGCAATTCCTTTTT+TGG | - | chr5.4:17270371-17270390 | MS.gene83458:CDS | 25.0% |
| !!! | TTTTTTTTCTTCATAACTGC+AGG | - | chr5.4:17270776-17270795 | MS.gene83458:CDS | 25.0% |
| AAATATTCTGGTGTTTGTAC+TGG | - | chr5.4:17268646-17268665 | MS.gene83458:CDS | 30.0% | |
| AACAGACAAACAGAAAAGTA+AGG | + | chr5.4:17268758-17268777 | None:intergenic | 30.0% | |
| AATCAACTAGATCTAATGCA+AGG | - | chr5.4:17270733-17270752 | MS.gene83458:intron | 30.0% | |
| ACAGTTTATGACAAGTTCAT+AGG | + | chr5.4:17268944-17268963 | None:intergenic | 30.0% | |
| ATAACATGAGATATCCAACA+AGG | - | chr5.4:17270585-17270604 | MS.gene83458:CDS | 30.0% | |
| ATCAAGGTTAGATATTGTGA+CGG | - | chr5.4:17269534-17269553 | MS.gene83458:intron | 30.0% | |
| ATTTACTAGCACAAAATACC+TGG | + | chr5.4:17269435-17269454 | None:intergenic | 30.0% | |
| ATTTCATCTGAAAAGAAGAG+GGG | + | chr5.4:17269639-17269658 | None:intergenic | 30.0% | |
| CTAGGTACATTTGGATAATT+TGG | + | chr5.4:17271069-17271088 | None:intergenic | 30.0% | |
| TAAGCACTTGTGAAAGTTTA+TGG | + | chr5.4:17268969-17268988 | None:intergenic | 30.0% | |
| TTTCCCAAATTAATGAAACC+TGG | - | chr5.4:17270159-17270178 | MS.gene83458:intron | 30.0% | |
| ! | AGGTATTTTGTGCTAGTAAA+TGG | - | chr5.4:17269434-17269453 | MS.gene83458:intron | 30.0% |
| ! | ATTTCAATTTTGTTAGGGAG+GGG | - | chr5.4:17269290-17269309 | MS.gene83458:intron | 30.0% |
| ! | CAATTTCAATTTTGTTAGGG+AGG | - | chr5.4:17269288-17269307 | MS.gene83458:intron | 30.0% |
| ! | TCCGTCTTTTCTTTCTAATA+GGG | - | chr5.4:17270266-17270285 | MS.gene83458:intron | 30.0% |
| ! | TTCCGTCTTTTCTTTCTAAT+AGG | - | chr5.4:17270265-17270284 | MS.gene83458:intron | 30.0% |
| ! | TTTACCATGACTTGATTTTC+AGG | - | chr5.4:17270831-17270850 | MS.gene83458:intron | 30.0% |
| !! | ATTAAGAACATTTTAGCACC+GGG | - | chr5.4:17270649-17270668 | MS.gene83458:intron | 30.0% |
| !! | GATTAAGAACATTTTAGCAC+CGG | - | chr5.4:17270648-17270667 | MS.gene83458:intron | 30.0% |
| !! | TAGCTTTAGTAGATTCTGTT+TGG | - | chr5.4:17268784-17268803 | MS.gene83458:intron | 30.0% |
| AAAAGGTCGAAAACATATCC+AGG | + | chr5.4:17270180-17270199 | None:intergenic | 35.0% | |
| AAACTGAAATGCAAGGAACA+TGG | - | chr5.4:17270943-17270962 | MS.gene83458:intron | 35.0% | |
| AAAGCCTGAAAATCAAGTCA+TGG | + | chr5.4:17270838-17270857 | None:intergenic | 35.0% | |
| AATCACTTTACTCAAGAGTG+CGG | - | chr5.4:17268700-17268719 | MS.gene83458:CDS | 35.0% | |
| ACCAGCTTACCATTTAGATA+GGG | - | chr5.4:17269132-17269151 | MS.gene83458:intron | 35.0% | |
| AGAACACAAGATTAAGCCAA+TGG | - | chr5.4:17268615-17268634 | MS.gene83458:CDS | 35.0% | |
| AGAGTCTATGAACATTCCTT+TGG | + | chr5.4:17270907-17270926 | None:intergenic | 35.0% | |
| AGCACAATCAAAGTCATGTT+TGG | + | chr5.4:17269021-17269040 | None:intergenic | 35.0% | |
| AGGAAAAAAGAACTCCTAAC+CGG | + | chr5.4:17268738-17268757 | None:intergenic | 35.0% | |
| ATGTTCCTTGCATTTCAGTT+TGG | + | chr5.4:17270944-17270963 | None:intergenic | 35.0% | |
| CTACAATTGGAACAGAATCA+AGG | - | chr5.4:17269518-17269537 | MS.gene83458:intron | 35.0% | |
| GCCCTATTAGAAAGAAAAGA+CGG | + | chr5.4:17270270-17270289 | None:intergenic | 35.0% | |
| GGTAAGGACAATCTATCTTA+TGG | + | chr5.4:17271264-17271283 | None:intergenic | 35.0% | |
| GTTAGGTTCATCTAAGCATA+TGG | - | chr5.4:17269359-17269378 | MS.gene83458:intron | 35.0% | |
| TACCATTTAGATAGGGGATT+TGG | - | chr5.4:17269139-17269158 | MS.gene83458:intron | 35.0% | |
| TTCCAAATCCCCTATCTAAA+TGG | + | chr5.4:17269144-17269163 | None:intergenic | 35.0% | |
| TTGGAACAGGAATTAACAGT+TGG | - | chr5.4:17269158-17269177 | MS.gene83458:intron | 35.0% | |
| TTTCATCTGAAAAGAAGAGG+GGG | + | chr5.4:17269638-17269657 | None:intergenic | 35.0% | |
| TTTCTTGTGGTTCAAAAACG+CGG | + | chr5.4:17271309-17271328 | None:intergenic | 35.0% | |
| TTTGGGAAATGATCAGAGTT+AGG | + | chr5.4:17270148-17270167 | None:intergenic | 35.0% | |
| ! | AAAACGCGGTTTTTACAACT+CGG | + | chr5.4:17271295-17271314 | None:intergenic | 35.0% |
| ! | CAGTTGGTTAGTTCAATTTG+AGG | - | chr5.4:17269174-17269193 | MS.gene83458:intron | 35.0% |
| ! | GCTAATCAAATTGCCTTTTC+AGG | - | chr5.4:17269381-17269400 | MS.gene83458:intron | 35.0% |
| ! | TTACGCGTTGATAAAGTAAC+CGG | + | chr5.4:17269962-17269981 | None:intergenic | 35.0% |
| ! | TTGATGGCAATCTGTAGAAA+AGG | + | chr5.4:17269205-17269224 | None:intergenic | 35.0% |
| ! | TTTCAATTTTGTTAGGGAGG+GGG | - | chr5.4:17269291-17269310 | MS.gene83458:intron | 35.0% |
| ! | TTTTACAACTCGGATTGCAA+GGG | + | chr5.4:17271285-17271304 | None:intergenic | 35.0% |
| ! | TTTTCATAAGCTTTCCCGAA+GGG | - | chr5.4:17268894-17268913 | MS.gene83458:intron | 35.0% |
| ! | TTTTTACAACTCGGATTGCA+AGG | + | chr5.4:17271286-17271305 | None:intergenic | 35.0% |
| !! | TTTTGTGCAGTTTGTTTGGA+TGG | - | chr5.4:17269103-17269122 | MS.gene83458:intron | 35.0% |
| AACAGGAGACAGTTTAATCC+AGG | - | chr5.4:17269414-17269433 | MS.gene83458:intron | 40.0% | |
| ACCAATCTTCCTTGTGAATG+CGG | - | chr5.4:17270472-17270491 | MS.gene83458:intron | 40.0% | |
| AGTATTTCCATTAGCCCTTC+GGG | + | chr5.4:17268911-17268930 | None:intergenic | 40.0% | |
| AGTCTTGAAGTGCATGATCT+AGG | + | chr5.4:17270308-17270327 | None:intergenic | 40.0% | |
| AGTGCAATTTCTTGAGGATC+AGG | + | chr5.4:17270617-17270636 | None:intergenic | 40.0% | |
| ATTATCTCAGGATGTTCAGC+TGG | - | chr5.4:17269856-17269875 | MS.gene83458:CDS | 40.0% | |
| CAAAGCAGTGCAATTTCTTG+AGG | + | chr5.4:17270623-17270642 | None:intergenic | 40.0% | |
| CACCAGCTTACCATTTAGAT+AGG | - | chr5.4:17269131-17269150 | MS.gene83458:intron | 40.0% | |
| CCAAATGTACCTAGATCCAA+CGG | - | chr5.4:17271075-17271094 | MS.gene83458:intron | 40.0% | |
| CCAGAACTTGTAACTACAAC+AGG | - | chr5.4:17269831-17269850 | MS.gene83458:CDS | 40.0% | |
| CCAGCTTACCATTTAGATAG+GGG | - | chr5.4:17269133-17269152 | MS.gene83458:intron | 40.0% | |
| CCTGTTGTAGTTACAAGTTC+TGG | + | chr5.4:17269834-17269853 | None:intergenic | 40.0% | |
| CGGCTACATGAGATATATGA+AGG | + | chr5.4:17271158-17271177 | None:intergenic | 40.0% | |
| CTACAACAGGCTATTATCTC+AGG | - | chr5.4:17269844-17269863 | MS.gene83458:CDS | 40.0% | |
| CTATCTAAATGGTAAGCTGG+TGG | + | chr5.4:17269133-17269152 | None:intergenic | 40.0% | |
| GAGTATTTCCATTAGCCCTT+CGG | + | chr5.4:17268912-17268931 | None:intergenic | 40.0% | |
| GCACTCTTGAGTAAAGTGAT+TGG | + | chr5.4:17268701-17268720 | None:intergenic | 40.0% | |
| GTAACTAAGTTGCACTTCAG+AGG | - | chr5.4:17269687-17269706 | MS.gene83458:intron | 40.0% | |
| GTAGGAAACTCTACATCCAA+AGG | - | chr5.4:17270888-17270907 | MS.gene83458:intron | 40.0% | |
| GTGCAATTTCTTGAGGATCA+GGG | + | chr5.4:17270616-17270635 | None:intergenic | 40.0% | |
| GTTAACAGAAGGGATGTATC+TGG | - | chr5.4:17270068-17270087 | MS.gene83458:CDS | 40.0% | |
| TAGTAGTGACTCTCCATCAT+TGG | - | chr5.4:17270968-17270987 | MS.gene83458:intron | 40.0% | |
| TCGGGAAAGCTTATGAAAAC+AGG | + | chr5.4:17268893-17268912 | None:intergenic | 40.0% | |
| TGCAGTTATGGAAGATTTGC+TGG | - | chr5.4:17269725-17269744 | MS.gene83458:intron | 40.0% | |
| TTTGAACCACAAGAAAACCC+AGG | - | chr5.4:17271313-17271332 | MS.gene83458:CDS | 40.0% | |
| ! | CATTTCACTTTAGCTCCTCT+TGG | + | chr5.4:17269928-17269947 | None:intergenic | 40.0% |
| ! | GTTTGTACTGGTATTGCTGA+AGG | - | chr5.4:17268658-17268677 | MS.gene83458:CDS | 40.0% |
| ! | GTTTTCATAAGCTTTCCCGA+AGG | - | chr5.4:17268893-17268912 | MS.gene83458:intron | 40.0% |
| ! | TATACTCCTGGGTTTTCTTG+TGG | + | chr5.4:17271322-17271341 | None:intergenic | 40.0% |
| ! | TTAGATAGGGGATTTGGAAC+AGG | - | chr5.4:17269145-17269164 | MS.gene83458:intron | 40.0% |
| !! | ATGGAAGATTTGCTGGCAAA+GGG | - | chr5.4:17269732-17269751 | MS.gene83458:intron | 40.0% |
| !! | TATGGAAGATTTGCTGGCAA+AGG | - | chr5.4:17269731-17269750 | MS.gene83458:intron | 40.0% |
| ATTGACTGCTTCCACATCAC+CGG | + | chr5.4:17269571-17269590 | None:intergenic | 45.0% | |
| CACTGCCAAACTGAAATGCA+AGG | - | chr5.4:17270936-17270955 | MS.gene83458:intron | 45.0% | |
| CCCCTATCTAAATGGTAAGC+TGG | + | chr5.4:17269136-17269155 | None:intergenic | 45.0% | |
| CCGTTGGATCTAGGTACATT+TGG | + | chr5.4:17271078-17271097 | None:intergenic | 45.0% | |
| CTCCTCTTGGAAAAAGAGCT+CGG | + | chr5.4:17269915-17269934 | None:intergenic | 45.0% | |
| CTGCAGAGTCGTTAGATTCA+AGG | - | chr5.4:17271043-17271062 | MS.gene83458:intron | 45.0% | |
| GCAGCCGTGGAAAAAGATTA+TGG | + | chr5.4:17271027-17271046 | None:intergenic | 45.0% | |
| GTATTGCTGAAGGTAGAAGC+TGG | - | chr5.4:17268668-17268687 | MS.gene83458:CDS | 45.0% | |
| TAAAGTAACCGGCATCTGAG+AGG | + | chr5.4:17269951-17269970 | None:intergenic | 45.0% | |
| TATGCTTGGATTCTTTGCCG+CGG | + | chr5.4:17271109-17271128 | None:intergenic | 45.0% | |
| TTGCAAAAGCTGTAGCAGAC+TGG | - | chr5.4:17271218-17271237 | MS.gene83458:CDS | 45.0% | |
| ! | AATTTTGTTAGGGAGGGGGA+TGG | - | chr5.4:17269295-17269314 | MS.gene83458:intron | 45.0% |
| ! | CTCAAGAGTGCGGTATCAAA+AGG | - | chr5.4:17268710-17268729 | MS.gene83458:CDS | 45.0% |
| ! | TGTGACGGTTCGTCTTTTAC+CGG | - | chr5.4:17269549-17269568 | MS.gene83458:intron | 45.0% |
| ! | TTCCGAGCTCTTTTTCCAAG+AGG | - | chr5.4:17269910-17269929 | MS.gene83458:intron | 45.0% |
| ! | TTCGTCTTTTACCGGTGATG+TGG | - | chr5.4:17269557-17269576 | MS.gene83458:intron | 45.0% |
| !! | TTAAGGGCATTGACTGCTGT+AGG | - | chr5.4:17270870-17270889 | MS.gene83458:intron | 45.0% |
| AAGCTTTCCCGAAGGGCTAA+TGG | - | chr5.4:17268901-17268920 | MS.gene83458:intron | 50.0% | |
| ACCGATACGTCTTGCGAGAA+AGG | + | chr5.4:17269341-17269360 | None:intergenic | 50.0% | |
| AGTCGTATGCCGCATTCACA+AGG | + | chr5.4:17270484-17270503 | None:intergenic | 50.0% | |
| AGTGCGGTATCAAAAGGAGC+CGG | - | chr5.4:17268716-17268735 | MS.gene83458:CDS | 50.0% | |
| AGTGTGGCTTCTTACCGTCT+TGG | + | chr5.4:17270994-17271013 | None:intergenic | 50.0% | |
| ATCTCAGGATGTTCAGCTGG+TGG | - | chr5.4:17269859-17269878 | MS.gene83458:intron | 50.0% | |
| CAACTCGGATTGCAAGGGTA+AGG | + | chr5.4:17271280-17271299 | None:intergenic | 50.0% | |
| CTCTCCATCATTGGCCAAGA+CGG | - | chr5.4:17270977-17270996 | MS.gene83458:intron | 50.0% | |
| CTTACCGTCTTGGCCAATGA+TGG | + | chr5.4:17270984-17271003 | None:intergenic | 50.0% | |
| GCACTTCAAGACTCAGTCCA+AGG | - | chr5.4:17270315-17270334 | MS.gene83458:intron | 50.0% | |
| GCCGCATTCACAAGGAAGAT+TGG | + | chr5.4:17270476-17270495 | None:intergenic | 50.0% | |
| GCCTTTCTCGCAAGACGTAT+CGG | - | chr5.4:17269337-17269356 | MS.gene83458:intron | 50.0% | |
| GCTCACAAACTTACCAGCCT+TGG | + | chr5.4:17270335-17270354 | None:intergenic | 50.0% | |
| GGTATCAAAAGGAGCCGGTT+AGG | - | chr5.4:17268721-17268740 | MS.gene83458:intron | 50.0% | |
| GTGAAATGCCTCTCAGATGC+CGG | - | chr5.4:17269940-17269959 | MS.gene83458:intron | 50.0% | |
| TCTCAGGATGTTCAGCTGGT+GGG | - | chr5.4:17269860-17269879 | MS.gene83458:intron | 50.0% | |
| TGAATGCGGCATACGACTCA+TGG | - | chr5.4:17270486-17270505 | MS.gene83458:intron | 50.0% | |
| TTCAAGACTCAGTCCAAGGC+TGG | - | chr5.4:17270319-17270338 | MS.gene83458:intron | 50.0% | |
| ! | GGATCAGGGAAAAGCCTTGT+TGG | + | chr5.4:17270602-17270621 | None:intergenic | 50.0% |
| !! | TCTCGCAAGACGTATCGGTT+AGG | - | chr5.4:17269342-17269361 | MS.gene83458:intron | 50.0% |
| ATCTAACGACTCTGCAGCCG+TGG | + | chr5.4:17271040-17271059 | None:intergenic | 55.0% | |
| CTGCTGATCCTCGTGGACAC+TGG | - | chr5.4:17270674-17270693 | MS.gene83458:intron | 60.0% | |
| GCTGCAGAGCCGTTGGATCT+AGG | + | chr5.4:17271087-17271106 | None:intergenic | 60.0% | |
| TGCGGCATACGACTCATGGC+AGG | - | chr5.4:17270490-17270509 | MS.gene83458:intron | 60.0% | |
| ATCCAACGGCTCTGCAGCCG+CGG | - | chr5.4:17271089-17271108 | MS.gene83458:intron | 65.0% | |
| CAGCTGTGCCAGTGTCCACG+AGG | + | chr5.4:17270685-17270704 | None:intergenic | 65.0% | |
| CCACGAGGATCAGCAGCTCC+CGG | + | chr5.4:17270670-17270689 | None:intergenic | 65.0% | |
| CCGGGAGCTGCTGATCCTCG+TGG | - | chr5.4:17270667-17270686 | MS.gene83458:intron | 70.0% | |
| TGCCGCGGCTGCAGAGCCGT+TGG | + | chr5.4:17271094-17271113 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 17268611 | 17271342 | 17268611 | ID=MS.gene83458 |
| chr5.4 | mRNA | 17268611 | 17271342 | 17268611 | ID=MS.gene83458.t1;Parent=MS.gene83458 |
| chr5.4 | exon | 17271216 | 17271342 | 17271216 | ID=MS.gene83458.t1.exon1;Parent=MS.gene83458.t1 |
| chr5.4 | CDS | 17271216 | 17271342 | 17271216 | ID=cds.MS.gene83458.t1;Parent=MS.gene83458.t1 |
| chr5.4 | exon | 17270758 | 17270840 | 17270758 | ID=MS.gene83458.t1.exon2;Parent=MS.gene83458.t1 |
| chr5.4 | CDS | 17270758 | 17270840 | 17270758 | ID=cds.MS.gene83458.t1;Parent=MS.gene83458.t1 |
| chr5.4 | exon | 17270518 | 17270647 | 17270518 | ID=MS.gene83458.t1.exon3;Parent=MS.gene83458.t1 |
| chr5.4 | CDS | 17270518 | 17270647 | 17270518 | ID=cds.MS.gene83458.t1;Parent=MS.gene83458.t1 |
| chr5.4 | exon | 17270360 | 17270439 | 17270360 | ID=MS.gene83458.t1.exon4;Parent=MS.gene83458.t1 |
| chr5.4 | CDS | 17270360 | 17270439 | 17270360 | ID=cds.MS.gene83458.t1;Parent=MS.gene83458.t1 |
| chr5.4 | exon | 17270180 | 17270266 | 17270180 | ID=MS.gene83458.t1.exon5;Parent=MS.gene83458.t1 |
| chr5.4 | CDS | 17270180 | 17270266 | 17270180 | ID=cds.MS.gene83458.t1;Parent=MS.gene83458.t1 |
| chr5.4 | exon | 17269976 | 17270100 | 17269976 | ID=MS.gene83458.t1.exon6;Parent=MS.gene83458.t1 |
| chr5.4 | CDS | 17269976 | 17270100 | 17269976 | ID=cds.MS.gene83458.t1;Parent=MS.gene83458.t1 |
| chr5.4 | exon | 17269817 | 17269877 | 17269817 | ID=MS.gene83458.t1.exon7;Parent=MS.gene83458.t1 |
| chr5.4 | CDS | 17269817 | 17269877 | 17269817 | ID=cds.MS.gene83458.t1;Parent=MS.gene83458.t1 |
| chr5.4 | exon | 17269613 | 17269666 | 17269613 | ID=MS.gene83458.t1.exon8;Parent=MS.gene83458.t1 |
| chr5.4 | CDS | 17269613 | 17269666 | 17269613 | ID=cds.MS.gene83458.t1;Parent=MS.gene83458.t1 |
| chr5.4 | exon | 17269442 | 17269519 | 17269442 | ID=MS.gene83458.t1.exon9;Parent=MS.gene83458.t1 |
| chr5.4 | CDS | 17269442 | 17269519 | 17269442 | ID=cds.MS.gene83458.t1;Parent=MS.gene83458.t1 |
| chr5.4 | exon | 17269199 | 17269304 | 17269199 | ID=MS.gene83458.t1.exon10;Parent=MS.gene83458.t1 |
| chr5.4 | CDS | 17269199 | 17269304 | 17269199 | ID=cds.MS.gene83458.t1;Parent=MS.gene83458.t1 |
| chr5.4 | exon | 17268955 | 17269100 | 17268955 | ID=MS.gene83458.t1.exon11;Parent=MS.gene83458.t1 |
| chr5.4 | CDS | 17268955 | 17269100 | 17268955 | ID=cds.MS.gene83458.t1;Parent=MS.gene83458.t1 |
| chr5.4 | exon | 17268611 | 17268739 | 17268611 | ID=MS.gene83458.t1.exon12;Parent=MS.gene83458.t1 |
| chr5.4 | CDS | 17268611 | 17268739 | 17268611 | ID=cds.MS.gene83458.t1;Parent=MS.gene83458.t1 |
| Gene Sequence |
| Protein sequence |
