AlfalfaGEDB | MS.gene054486

M. sativa cultivar XinJiangDaYe / MS.gene054486

KEGG: K08237
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054486.t1	XP_013442848.1	81.6	472	25	1	1	410	1	472	9.80E-208	732.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054486.t1	Q9AR73	39.4	469	215	6	1	405	1	464	7.1e-90	332.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054486.t1	A0A072TJ24	81.6	472	25	1	1	410	1	472	7.0e-208	732.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049488	MS.gene054486	0.800753	1.24E-48	-1.69E-46
MS.gene053505	MS.gene054486	0.815992	6.96E-52	-1.69E-46
MS.gene053813	MS.gene054486	0.829192	5.91E-55	-1.69E-46
MS.gene053873	MS.gene054486	0.807252	5.53E-50	-1.69E-46
MS.gene054486	MS.gene055486	0.814992	1.16E-51	-1.69E-46
MS.gene054486	MS.gene055909	0.86632	3.11E-65	-1.69E-46
MS.gene054486	MS.gene055911	0.867326	1.49E-65	-1.69E-46
MS.gene054486	MS.gene05601	0.852316	5.00E-61	-1.69E-46
MS.gene054486	MS.gene056511	0.815718	8.01E-52	-1.69E-46
MS.gene054486	MS.gene056942	0.811983	5.33E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054486.t1	MTR_0078s0010	94.659	337	18	0	1	337	1	337	0.0	660
MS.gene054486.t1	MTR_0078s0010	90.541	74	7	0	337	410	399	472	3.34e-34	132
MS.gene054486.t1	MTR_7g047030	92.878	337	24	0	1	337	1	337	0.0	649
MS.gene054486.t1	MTR_7g047030	89.189	74	8	0	337	410	399	472	1.18e-33	131
MS.gene054486.t1	MTR_7g047270	92.878	337	24	0	1	337	1	337	0.0	649
MS.gene054486.t1	MTR_7g047270	89.189	74	8	0	337	410	399	472	1.18e-33	131
MS.gene054486.t1	MTR_0184s0040	85.163	337	50	0	1	337	16	352	0.0	583
MS.gene054486.t1	MTR_0184s0040	69.863	73	21	1	337	409	414	485	1.19e-23	103
MS.gene054486.t1	MTR_0078s0190	85.163	337	50	0	1	337	16	352	0.0	583
MS.gene054486.t1	MTR_0078s0190	69.863	73	21	1	337	409	414	485	1.19e-23	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054486.t1	AT4G01070	47.198	339	175	4	2	338	4	340	2.47e-101	305
MS.gene054486.t1	AT4G01070	47.041	338	175	4	2	337	4	339	2.37e-99	304
MS.gene054486.t1	AT1G01390	46.746	338	176	4	2	337	4	339	8.69e-98	300
MS.gene054486.t1	AT1G01390	46.746	338	176	4	2	337	21	356	1.23e-97	300
MS.gene054486.t1	AT1G01420	45.266	338	181	4	2	337	4	339	7.13e-94	290
MS.gene054486.t1	AT1G01420	45.266	338	181	4	2	337	7	342	7.76e-94	290
MS.gene054486.t1	AT5G66690	32.665	349	201	11	6	337	7	338	1.34e-51	180
MS.gene054486.t1	AT3G50740	33.913	345	207	11	6	337	7	343	2.90e-51	179
MS.gene054486.t1	AT2G18570	31.195	343	209	11	6	335	5	333	2.29e-48	171
MS.gene054486.t1	AT5G26310	32.081	346	207	9	6	337	7	338	5.24e-48	171

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Find 67 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAAGTTTATGTTTGG+TGG	0.393290	7.4:+56246388	None:intergenic
AAAGATGATTAAGTGTGTGA+TGG	0.637223	7.4:-56245309	MS.gene054486:CDS
AAAGTACAAAAGCTGAACAA+GGG	0.678258	7.4:+56246155	None:intergenic
AAGCTGAACAAGGGAAGTAA+AGG	0.507190	7.4:+56246164	None:intergenic
AAGTCTTGTTTATTGATTGG+TGG	0.545745	7.4:+56246361	None:intergenic
AATAAACAAGACTTACCTCA+AGG	0.612341	7.4:-56246352	MS.gene054486:CDS
AATACAAACTATTTCACACT+TGG	0.521278	7.4:-56245198	MS.gene054486:CDS
AATTGCTGATAAATTTGCAT+TGG	0.486451	7.4:-56246227	MS.gene054486:CDS
ACACATCCTGGTAACTTTAT+AGG	0.232228	7.4:+56246067	None:intergenic
ACAGTAACAAAAGATAGATC+AGG	0.513854	7.4:-56246019	MS.gene054486:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATGATTAAGTGTGTGA+TGG	-	chr7.4:56246419-56246438	MS.gene054486:CDS	30.0%
AAAGTACAAAAGCTGAACAA+GGG	+	chr7.4:56245576-56245595	None:intergenic	30.0%
AATAAACAAGACTTACCTCA+AGG	-	chr7.4:56245376-56245395	MS.gene054486:intron	30.0%
AATGCTGTTATGTTATGTGA+TGG	-	chr7.4:56246333-56246352	MS.gene054486:CDS	30.0%
ACAGTAACAAAAGATAGATC+AGG	-	chr7.4:56245709-56245728	MS.gene054486:CDS	30.0%
AGACAAAGAATTGAACTCTT+TGG	+	chr7.4:56245542-56245561	None:intergenic	30.0%
ATGCAAGTGACATGAAAATT+TGG	+	chr7.4:56245265-56245284	None:intergenic	30.0%
ATTTGAAGATGATGAGATTG+TGG	-	chr7.4:56246380-56246399	MS.gene054486:CDS	30.0%
CTTGATCCAATTTGTGTAAT+GGG	+	chr7.4:56245883-56245902	None:intergenic	30.0%
TCAGCAATTATAGCAACTAA+AGG	+	chr7.4:56245490-56245509	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	56245166	56246584	56245166	ID=MS.gene054486
chr7.4	mRNA	56245166	56246584	56245166	ID=MS.gene054486.t1;Parent=MS.gene054486
chr7.4	exon	56245573	56246584	56245573	ID=MS.gene054486.t1.exon1;Parent=MS.gene054486.t1
chr7.4	CDS	56245573	56246584	56245573	ID=cds.MS.gene054486.t1;Parent=MS.gene054486.t1
chr7.4	exon	56245166	56245386	56245166	ID=MS.gene054486.t1.exon2;Parent=MS.gene054486.t1
chr7.4	CDS	56245166	56245386	56245166	ID=cds.MS.gene054486.t1;Parent=MS.gene054486.t1

Gene Sequence

>MS.gene054486

ATGGCAAAAACAACTCACATAGCTGTTATTTCAAGCCCTGGTTTCAGCCACATAGCCCCAATAGTAGAATTCTCCAAAAGATTAGTCACAAATCATCCAAATTTTCATGTCACTTGCATCATTCCCTCACTTGGTTCACTACCAGATTCATCAAAATCATACCTTGAAACAATTCCACCAAACATAAACTTAGTTTTTCTTCCACCAATCAATAAACAAGACTTACCTCAAGGAGTATACCCAGGAATCCTAATTCAACTCACAGTTACACGCTCTCTACCATCAATTCATGAAGCTCTCAAATCAATATATTCAAAAGCACCTTTAGTTGCTATAATTGCTGATAAATTTGCATTGGAAGCACTAGATTTTGCCAAAGAGTTCAATTCTTTGTCTTACCTTTACTTCCCTTGTTCAGCTTTTGTACTTTCTTTTTATTTACATTGGCCAAAACTTGATGAAGAGGTTTCATGTAAATACAAAGAATTACAAGAACCTATAAAGTTACCAGGATGTGTACCAATCAATGGTATTGATCTTCATACAGTAACAAAAGATAGATCAGGTCAAGCTTACAAAATGTATCTTCAACGTGCTAAAGGTATGTATTTTGTTGATGGAATCTTGTTTAACAGTTTCTTTGCATTAGAATCAAGTGCTATAAAAGCATTGGAACAACATGGTGATGGAAAAATCAGTTTTTTTCCTGTGGGACCCATTACACAAATTGGATCAAGCAACAATGATGTTGTTGGTGATGAACTTGAATGTTTGAAATGGATGAAAAACCAACCACAAAATTCTGTTTTGTATGTTTCTTTTGGAAGTGGTGGAACACTTTCTCAAAGACAAATGAATGAACTAGCTTTTGGTTTGGAATTGAGTGGTCAAAGATTCATTTGGGTTGTGAGACAACCAAGTGATTCAGTTAGTGCTGCTTATCTTGAAGATGCAAATGGAGATCCACTGAAATTTTTACCTACAGGGTTTTTGGAAAGAACCAAAGAAAAAGGTTTGATTTTGCCATCATGGGCACCTCAAGTTGAAATACTAAAGCAAAATTCTGTTGGTGGATTTTTAAGTCATTGTGGTTGGAATTCAACTTTGGAAAGTATACAAGAGGGGGTGCCAATGGTAGCTTGGCCATTGTTTGCCGAACAAGCAATGAATGCTGTTATGTTATGTGATGGTCTTAAAGTGGCTTTAAGGTTGAAATTTGAAGATGATGAGATTGTGGTAAAGGAGAAAATTGCAAAGATGATTAAGTGTGTGATGGAAGGGGAAGAAGGTAAAGCAATGCGTGATAGAATGAAGAATTTAAGAGAATCTGCTGCTATGGCATTGAAAGTCAAAGATGGTTCTTCAATACAAACTATTTCACACTTGGCTACTCAATTGGAAAAGATTGGTGGGATTTAG

Protein sequence

>MS.gene054486.t1

MAKTTHIAVISSPGFSHIAPIVEFSKRLVTNHPNFHVTCIIPSLGSLPDSSKSYLETIPPNINLVFLPPINKQDLPQGVYPGILIQLTVTRSLPSIHEALKSIYSKAPLVAIIADKFALEALDFAKEFNSLSYLYFPCSAFVLSFYLHWPKLDEEVSCKYKELQEPIKLPGCVPINGIDLHTVTKDRSGQAYKMYLQRAKGMYFVDGILFNSFFALESSAIKALEQHGDGKISFFPVGPITQIGSSNNDVVGDELECLKWMKNQPQNSVLYVSFGSGGTLSQRQMNELAFGLELSGQRFIWVVRQPSDSVSAAYLEDANGDPLKFLPTGFLERTKEKVALRLKFEDDEIVVKEKIAKMIKCVMEGEEGKAMRDRMKNLRESAAMALKVKDGSSIQTISHLATQLEKIGGI