Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83494.t1 | XP_003612482.1 | 94.8 | 135 | 6 | 1 | 1 | 135 | 1 | 134 | 3.10E-41 | 177.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83494.t1 | Q08747 | 48.6 | 74 | 36 | 2 | 60 | 133 | 124 | 195 | 2.6e-12 | 73.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83494.t1 | G7K408 | 94.8 | 135 | 6 | 1 | 1 | 135 | 1 | 134 | 2.2e-41 | 177.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene83494.t1 | TR | SWI/SNF-BAF60b |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056978 | MS.gene83494 | 0.805158 | 1.53E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene83494 | MS.gene73121 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83494.t1 | MTR_5g025500 | 97.037 | 135 | 3 | 1 | 1 | 135 | 1 | 134 | 5.37e-90 | 257 |
| MS.gene83494.t1 | MTR_5g005200 | 47.436 | 78 | 41 | 0 | 55 | 132 | 65 | 142 | 9.26e-24 | 89.7 |
| MS.gene83494.t1 | MTR_5g018010 | 42.857 | 84 | 47 | 1 | 52 | 135 | 184 | 266 | 1.48e-18 | 79.3 |
| MS.gene83494.t1 | MTR_5g018010 | 42.466 | 73 | 41 | 1 | 58 | 130 | 57 | 128 | 1.38e-17 | 76.6 |
| MS.gene83494.t1 | MTR_5g018010 | 45.946 | 74 | 39 | 1 | 62 | 135 | 271 | 343 | 1.84e-18 | 79.7 |
| MS.gene83494.t1 | MTR_5g018010 | 42.466 | 73 | 41 | 1 | 58 | 130 | 134 | 205 | 1.73e-17 | 77.0 |
| MS.gene83494.t1 | MTR_3g055330 | 37.374 | 99 | 61 | 1 | 34 | 132 | 138 | 235 | 2.80e-17 | 76.6 |
| MS.gene83494.t1 | MTR_3g055330 | 37.374 | 99 | 61 | 1 | 34 | 132 | 138 | 235 | 2.96e-17 | 76.3 |
| MS.gene83494.t1 | MTR_5g025520 | 37.662 | 77 | 48 | 0 | 55 | 131 | 26 | 102 | 3.18e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83494.t1 | AT2G35605 | 55.303 | 132 | 35 | 3 | 4 | 135 | 2 | 109 | 1.25e-39 | 129 |
| MS.gene83494.t1 | AT1G31760 | 60.606 | 99 | 38 | 1 | 37 | 134 | 13 | 111 | 2.25e-35 | 118 |
| MS.gene83494.t1 | AT3G03590 | 58.621 | 87 | 35 | 1 | 49 | 135 | 58 | 143 | 7.54e-32 | 110 |
| MS.gene83494.t1 | AT2G14880 | 43.860 | 114 | 60 | 1 | 19 | 132 | 32 | 141 | 4.40e-30 | 105 |
| MS.gene83494.t1 | AT4G34290 | 47.674 | 86 | 45 | 0 | 47 | 132 | 59 | 144 | 1.04e-28 | 102 |
| MS.gene83494.t1 | AT3G48600 | 53.165 | 79 | 36 | 1 | 54 | 131 | 33 | 111 | 9.55e-23 | 88.6 |
| MS.gene83494.t1 | AT3G48600 | 53.165 | 79 | 36 | 1 | 54 | 131 | 33 | 111 | 2.65e-22 | 88.6 |
| MS.gene83494.t1 | AT4G26810 | 39.362 | 94 | 55 | 1 | 44 | 135 | 6 | 99 | 5.09e-19 | 76.6 |
| MS.gene83494.t1 | AT4G26810 | 39.362 | 94 | 55 | 1 | 44 | 135 | 6 | 99 | 5.09e-19 | 76.6 |
| MS.gene83494.t1 | AT4G22360 | 38.318 | 107 | 62 | 2 | 29 | 132 | 167 | 272 | 1.71e-17 | 77.4 |
| MS.gene83494.t1 | AT4G22360 | 36.047 | 86 | 52 | 2 | 52 | 135 | 301 | 385 | 3.19e-11 | 59.7 |
| MS.gene83494.t1 | AT1G49520 | 41.975 | 81 | 46 | 1 | 51 | 131 | 246 | 325 | 3.08e-15 | 71.2 |
| MS.gene83494.t1 | AT1G49520 | 38.272 | 81 | 49 | 1 | 51 | 131 | 97 | 176 | 2.15e-14 | 68.9 |
| MS.gene83494.t1 | AT3G19080 | 46.774 | 62 | 33 | 0 | 51 | 112 | 259 | 320 | 1.31e-13 | 66.6 |
| MS.gene83494.t1 | AT3G19080 | 38.750 | 80 | 48 | 1 | 51 | 130 | 111 | 189 | 2.96e-12 | 62.8 |
| MS.gene83494.t1 | AT3G19080 | 46.774 | 62 | 33 | 0 | 51 | 112 | 259 | 320 | 2.23e-13 | 66.2 |
| MS.gene83494.t1 | AT3G19080 | 40.260 | 77 | 43 | 2 | 60 | 134 | 385 | 460 | 1.06e-12 | 63.9 |
| MS.gene83494.t1 | AT3G19080 | 38.750 | 80 | 48 | 1 | 51 | 130 | 111 | 189 | 5.05e-12 | 62.0 |
| MS.gene83494.t1 | AT3G19080 | 46.774 | 62 | 33 | 0 | 51 | 112 | 259 | 320 | 2.24e-13 | 66.2 |
| MS.gene83494.t1 | AT3G19080 | 40.260 | 77 | 43 | 2 | 60 | 134 | 387 | 462 | 1.06e-12 | 63.9 |
| MS.gene83494.t1 | AT3G19080 | 38.750 | 80 | 48 | 1 | 51 | 130 | 111 | 189 | 5.05e-12 | 62.0 |
| MS.gene83494.t1 | AT3G19080 | 46.774 | 62 | 33 | 0 | 51 | 112 | 259 | 320 | 2.24e-13 | 66.2 |
| MS.gene83494.t1 | AT3G19080 | 40.260 | 77 | 43 | 2 | 60 | 134 | 387 | 462 | 1.06e-12 | 63.9 |
| MS.gene83494.t1 | AT3G19080 | 38.750 | 80 | 48 | 1 | 51 | 130 | 111 | 189 | 5.05e-12 | 62.0 |
Find 37 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATCTCCTTCTTGTTATT+AGG | 0.242982 | 5.3:+15071811 | None:intergenic |
| CTGAAGCTGTTAAGAAAGTT+TGG | 0.251130 | 5.3:-15073010 | MS.gene83494:CDS |
| TTTATCTTTCCCATCGAAAA+TGG | 0.302387 | 5.3:+15071768 | None:intergenic |
| TTGGTGCGCCTGAAGTTTCT+AGG | 0.344233 | 5.3:-15073034 | MS.gene83494:CDS |
| TTCAGCTTGATTTCACGAAA+TGG | 0.371326 | 5.3:+15071710 | None:intergenic |
| TATCAAGCTGCAGAATCTTC+AGG | 0.384496 | 5.3:-15072982 | MS.gene83494:intron |
| TCTGAGCTCGGTAATTTCAT+TGG | 0.417141 | 5.3:-15073053 | MS.gene83494:CDS |
| GAAATGGGTAGCTAGCAATT+TGG | 0.423194 | 5.3:+15071726 | None:intergenic |
| AAGAAGGCGGCTGCATCCGC+CGG | 0.443418 | 5.3:-15073170 | MS.gene83494:CDS |
| TGAAGCTGTTAAGAAAGTTT+GGG | 0.446267 | 5.3:-15073009 | MS.gene83494:CDS |
| CAGAATGCTAATGGCGGCGG+CGG | 0.448004 | 5.3:-15073207 | MS.gene83494:CDS |
| ATTCGCCGGCAGAATGCTAA+TGG | 0.448608 | 5.3:-15073216 | MS.gene83494:CDS |
| GACGGTTGTGGATGCAGCTC+CGG | 0.455046 | 5.3:+15073151 | None:intergenic |
| GCTTCAGTCCTAGAAACTTC+AGG | 0.456584 | 5.3:+15073026 | None:intergenic |
| AGGGATACAGAAGGTAGTTC+CGG | 0.456709 | 5.3:-15073081 | MS.gene83494:CDS |
| TCAGCTTGATTTCACGAAAT+GGG | 0.467447 | 5.3:+15071711 | None:intergenic |
| CTAATGGCGGCGGCGGCGAA+AGG | 0.468371 | 5.3:-15073200 | MS.gene83494:CDS |
| AGCTAGCAATTTGGCAATCT+CGG | 0.474611 | 5.3:+15071735 | None:intergenic |
| GGCGAAAGGAGCCACGAAGA+AGG | 0.475511 | 5.3:-15073186 | MS.gene83494:CDS |
| CGGCAGAATGCTAATGGCGG+CGG | 0.488744 | 5.3:-15073210 | MS.gene83494:CDS |
| GAAAACCGCCGTGAAGAAAA+CGG | 0.489192 | 5.3:-15073123 | MS.gene83494:CDS |
| GGATGCAGCCGCCTTCTTCG+TGG | 0.510322 | 5.3:+15073175 | None:intergenic |
| CGCCGCCATTAGCATTCTGC+CGG | 0.516612 | 5.3:+15073211 | None:intergenic |
| TCGCGATCATGGCACCAGCT+AGG | 0.520628 | 5.3:-15073250 | None:intergenic |
| GCAGAATCCTAATAACAAGA+AGG | 0.524697 | 5.3:-15071818 | MS.gene83494:intron |
| GTTCCGGTCACTTCTGAGCT+CGG | 0.533521 | 5.3:-15073065 | MS.gene83494:CDS |
| AATGCTCCGAAAACCCTAGC+TGG | 0.551067 | 5.3:+15073236 | None:intergenic |
| TTTCGATGGGAAAGATAAAG+TGG | 0.555020 | 5.3:-15071764 | MS.gene83494:CDS |
| AACTACCTTCTGTATCCCTC+CGG | 0.556811 | 5.3:+15073085 | None:intergenic |
| GAAAGGAGCCACGAAGAAGG+CGG | 0.599028 | 5.3:-15073183 | MS.gene83494:CDS |
| CGCCGGCAGAATGCTAATGG+CGG | 0.604430 | 5.3:-15073213 | MS.gene83494:CDS |
| GGTTGTGGATGCAGCTCCGG+CGG | 0.606697 | 5.3:+15073154 | None:intergenic |
| ACGGTGACGAGCAAGAGTAC+CGG | 0.616079 | 5.3:-15073104 | MS.gene83494:CDS |
| TTACCGAGCTCAGAAGTGAC+CGG | 0.624475 | 5.3:+15073062 | None:intergenic |
| GTGACGAGCAAGAGTACCGG+AGG | 0.655721 | 5.3:-15073101 | MS.gene83494:CDS |
| GAGTACCGGAGGGATACAGA+AGG | 0.675343 | 5.3:-15073090 | MS.gene83494:CDS |
| TGACGAGCAAGAGTACCGGA+GGG | 0.724885 | 5.3:-15073100 | MS.gene83494:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGTTTATTTAAAAGAAA+AGG | - | chr5.3:15072560-15072579 | MS.gene83494:intron | 10.0% |
| !!! | TCATTTTCTTAAATTAATAT+CGG | - | chr5.3:15072483-15072502 | MS.gene83494:intron | 10.0% |
| !!! | ATGTAATAATAGTTTGAAAT+CGG | - | chr5.3:15072624-15072643 | MS.gene83494:intron | 15.0% |
| !! | AAGCTAAGGATATTATTTAT+AGG | + | chr5.3:15072815-15072834 | None:intergenic | 20.0% |
| !! | ATAACTAATGTAATCATTGT+TGG | - | chr5.3:15072873-15072892 | MS.gene83494:intron | 20.0% |
| !! | TTTGTTCTGTTATTAAATTG+TGG | - | chr5.3:15072971-15072990 | MS.gene83494:intron | 20.0% |
| !!! | ATTGTATTTTTGTCTCTTTT+TGG | - | chr5.3:15073072-15073091 | MS.gene83494:CDS | 20.0% |
| ! | AAGAGACAAAAATACAATAC+AGG | + | chr5.3:15073070-15073089 | None:intergenic | 25.0% |
| ! | ATTTAAGAAAGAGAAAAGGA+TGG | + | chr5.3:15072945-15072964 | None:intergenic | 25.0% |
| ! | GACAATTTAAGAAAGAGAAA+AGG | + | chr5.3:15072949-15072968 | None:intergenic | 25.0% |
| !! | AAAACTTTGATCAGGTTTTA+TGG | - | chr5.3:15072092-15072111 | MS.gene83494:intron | 25.0% |
| !!! | CAATTTTGATTAGTAGTAGA+TGG | - | chr5.3:15072758-15072777 | MS.gene83494:intron | 25.0% |
| !!! | TTATTTTGCGCTATTTGATT+TGG | - | chr5.3:15072117-15072136 | MS.gene83494:intron | 25.0% |
| AAACAAACATCTCAAAGCTA+AGG | + | chr5.3:15072829-15072848 | None:intergenic | 30.0% | |
| AGACAAAAATACAATACAGG+AGG | + | chr5.3:15073067-15073086 | None:intergenic | 30.0% | |
| CTGAATGAAAAACTTTGATC+AGG | - | chr5.3:15072084-15072103 | MS.gene83494:intron | 30.0% | |
| CTGAATGTAATCAAATGTGT+TGG | + | chr5.3:15072458-15072477 | None:intergenic | 30.0% | |
| TGAAGCTGTTAAGAAAGTTT+GGG | - | chr5.3:15071944-15071963 | MS.gene83494:intron | 30.0% | |
| TTTATCTTTCCCATCGAAAA+TGG | + | chr5.3:15073188-15073207 | None:intergenic | 30.0% | |
| TTTCAAAAATCACACGAAAC+AGG | + | chr5.3:15072259-15072278 | None:intergenic | 30.0% | |
| ! | AGTTTCTGTTGTCTGATTTT+TGG | - | chr5.3:15072667-15072686 | MS.gene83494:intron | 30.0% |
| ! | TGGTTATGATTTTCTTAAGC+AGG | - | chr5.3:15072778-15072797 | MS.gene83494:intron | 30.0% |
| !! | AAGATCTCCTTCTTGTTATT+AGG | + | chr5.3:15073145-15073164 | None:intergenic | 30.0% |
| !! | ATTGTTTGTTGTAATCGCAA+TGG | - | chr5.3:15072142-15072161 | MS.gene83494:intron | 30.0% |
| !! | ATTTTTGTCTCTTTTTGGTG+TGG | - | chr5.3:15073077-15073096 | MS.gene83494:CDS | 30.0% |
| !! | CTTTGAGATGTTTGTTTCTT+TGG | - | chr5.3:15072832-15072851 | MS.gene83494:intron | 30.0% |
| !!! | AATCGCAATGGTTTGTTTTA+GGG | - | chr5.3:15072154-15072173 | MS.gene83494:intron | 30.0% |
| !!! | TAATCGCAATGGTTTGTTTT+AGG | - | chr5.3:15072153-15072172 | MS.gene83494:intron | 30.0% |
| !!! | TTTTTTTCTGCTGTTCATAC+TGG | - | chr5.3:15072897-15072916 | MS.gene83494:intron | 30.0% |
| CTGAAGCTGTTAAGAAAGTT+TGG | - | chr5.3:15071943-15071962 | MS.gene83494:intron | 35.0% | |
| GCAGAATCCTAATAACAAGA+AGG | - | chr5.3:15073135-15073154 | MS.gene83494:CDS | 35.0% | |
| TCAGCTTGATTTCACGAAAT+GGG | + | chr5.3:15073245-15073264 | None:intergenic | 35.0% | |
| TCTGATGTTTGTGTTTGTGT+TGG | - | chr5.3:15072519-15072538 | MS.gene83494:intron | 35.0% | |
| TTTCGATGGGAAAGATAAAG+TGG | - | chr5.3:15073189-15073208 | MS.gene83494:CDS | 35.0% | |
| ! | AAACTGAAGACCATTTTCGA+TGG | - | chr5.3:15073175-15073194 | MS.gene83494:CDS | 35.0% |
| ! | AACTGAAGACCATTTTCGAT+GGG | - | chr5.3:15073176-15073195 | MS.gene83494:CDS | 35.0% |
| ! | TTATTGTTGTTGCGTTCATG+AGG | - | chr5.3:15072207-15072226 | MS.gene83494:intron | 35.0% |
| !! | TTCTGTTGTCTGATTTTTGG+AGG | - | chr5.3:15072670-15072689 | MS.gene83494:intron | 35.0% |
| AGCTAGCAATTTGGCAATCT+CGG | + | chr5.3:15073221-15073240 | None:intergenic | 40.0% | |
| ATCCAAGACAAACTATCCTG+CGG | + | chr5.3:15073032-15073051 | None:intergenic | 40.0% | |
| CACTTGACACTTCTGATTGA+AGG | - | chr5.3:15072392-15072411 | MS.gene83494:intron | 40.0% | |
| GAAATGGGTAGCTAGCAATT+TGG | + | chr5.3:15073230-15073249 | None:intergenic | 40.0% | |
| TATCAAGCTGCAGAATCTTC+AGG | - | chr5.3:15071971-15071990 | MS.gene83494:intron | 40.0% | |
| TCTGAGCTCGGTAATTTCAT+TGG | - | chr5.3:15071900-15071919 | MS.gene83494:intron | 40.0% | |
| TGGTGTGGCTGTTTACATAA+TGG | - | chr5.3:15073092-15073111 | MS.gene83494:CDS | 40.0% | |
| TTTCTTTGCGATGTTGCATC+TGG | - | chr5.3:15072324-15072343 | MS.gene83494:intron | 40.0% | |
| !! | AGAAGTGTCAAGTGTTATCG+AGG | + | chr5.3:15072386-15072405 | None:intergenic | 40.0% |
| !! | CAAATGTGTTGGTGTCATGT+CGG | + | chr5.3:15072447-15072466 | None:intergenic | 40.0% |
| !! | CAAGTTTGAGTTGTGCTATC+TGG | - | chr5.3:15072696-15072715 | MS.gene83494:intron | 40.0% |
| AAACTCTAGCCATCGCAACA+TGG | + | chr5.3:15072652-15072671 | None:intergenic | 45.0% | |
| AACTACCTTCTGTATCCCTC+CGG | + | chr5.3:15071871-15071890 | None:intergenic | 45.0% | |
| AGGGATACAGAAGGTAGTTC+CGG | - | chr5.3:15071872-15071891 | MS.gene83494:intron | 45.0% | |
| GAAAACCGCCGTGAAGAAAA+CGG | - | chr5.3:15071830-15071849 | MS.gene83494:intron | 45.0% | |
| GCTTCAGTCCTAGAAACTTC+AGG | + | chr5.3:15071930-15071949 | None:intergenic | 45.0% | |
| GTATATTGCTTAACAGCCGC+AGG | - | chr5.3:15073013-15073032 | MS.gene83494:CDS | 45.0% | |
| TAACCATCTCACCATCGCAA+GGG | + | chr5.3:15072738-15072757 | None:intergenic | 45.0% | |
| !! | TGTTTGTGTTGGTGCTGCAT+AGG | - | chr5.3:15072530-15072549 | MS.gene83494:intron | 45.0% |
| AAATCGGAGCCATGTTGCGA+TGG | - | chr5.3:15072640-15072659 | MS.gene83494:intron | 50.0% | |
| AATGCTCCGAAAACCCTAGC+TGG | + | chr5.3:15071720-15071739 | None:intergenic | 50.0% | |
| ACCATCGCAAGGGCTTCAAA+AGG | + | chr5.3:15072728-15072747 | None:intergenic | 50.0% | |
| ATTCGCCGGCAGAATGCTAA+TGG | - | chr5.3:15071737-15071756 | MS.gene83494:CDS | 50.0% | |
| CCATCGCAAGGGCTTCAAAA+GGG | + | chr5.3:15072727-15072746 | None:intergenic | 50.0% | |
| GTAACCATCTCACCATCGCA+AGG | + | chr5.3:15072739-15072758 | None:intergenic | 50.0% | |
| TTACCGAGCTCAGAAGTGAC+CGG | + | chr5.3:15071894-15071913 | None:intergenic | 50.0% | |
| TTGGTGCGCCTGAAGTTTCT+AGG | - | chr5.3:15071919-15071938 | MS.gene83494:intron | 50.0% | |
| ! | AGCCGCAGGATAGTTTGTCT+TGG | - | chr5.3:15073027-15073046 | MS.gene83494:CDS | 50.0% |
| ! | ATGGCACCAGCTAGGGTTTT+CGG | - | chr5.3:15071711-15071730 | MS.gene83494:CDS | 50.0% |
| ! | GCTCGTCACCGTTTTCTTCA+CGG | + | chr5.3:15071841-15071860 | None:intergenic | 50.0% |
| ! | GGTTTTCTTCACGACGGTTG+TGG | + | chr5.3:15071817-15071836 | None:intergenic | 50.0% |
| ! | TTGAAGGTGTGTCCATCGTC+CGG | - | chr5.3:15072408-15072427 | MS.gene83494:intron | 50.0% |
| !! | TGTCGGTGTCAAACACATGC+CGG | + | chr5.3:15072430-15072449 | None:intergenic | 50.0% |
| AAGCCCTTGCGATGGTGAGA+TGG | - | chr5.3:15072732-15072751 | MS.gene83494:intron | 55.0% | |
| GAAAGGAGCCACGAAGAAGG+CGG | - | chr5.3:15071770-15071789 | MS.gene83494:CDS | 55.0% | |
| GTCAAACACATGCCGGACGA+TGG | + | chr5.3:15072423-15072442 | None:intergenic | 55.0% | |
| GTTCCGGTCACTTCTGAGCT+CGG | - | chr5.3:15071888-15071907 | MS.gene83494:intron | 55.0% | |
| ! | ACGGTGACGAGCAAGAGTAC+CGG | - | chr5.3:15071849-15071868 | MS.gene83494:intron | 55.0% |
| ! | CACGGCGGTTTTCTTCACGA+CGG | + | chr5.3:15071823-15071842 | None:intergenic | 55.0% |
| ! | CGTCACCGTTTTCTTCACGG+CGG | + | chr5.3:15071838-15071857 | None:intergenic | 55.0% |
| !! | AGGGTTTTCGGAGCATTCGC+CGG | - | chr5.3:15071723-15071742 | MS.gene83494:CDS | 55.0% |
| !! | GAGTACCGGAGGGATACAGA+AGG | - | chr5.3:15071863-15071882 | MS.gene83494:intron | 55.0% |
| !! | TGACGAGCAAGAGTACCGGA+GGG | - | chr5.3:15071853-15071872 | MS.gene83494:intron | 55.0% |
| !!! | CCCTTTTGAAGCCCTTGCGA+TGG | - | chr5.3:15072724-15072743 | MS.gene83494:intron | 55.0% |
| CAGAATGCTAATGGCGGCGG+CGG | - | chr5.3:15071746-15071765 | MS.gene83494:CDS | 60.0% | |
| CGCCGCCATTAGCATTCTGC+CGG | + | chr5.3:15071745-15071764 | None:intergenic | 60.0% | |
| CGCCGGCAGAATGCTAATGG+CGG | - | chr5.3:15071740-15071759 | MS.gene83494:CDS | 60.0% | |
| CGGCAGAATGCTAATGGCGG+CGG | - | chr5.3:15071743-15071762 | MS.gene83494:CDS | 60.0% | |
| GACGGTTGTGGATGCAGCTC+CGG | + | chr5.3:15071805-15071824 | None:intergenic | 60.0% | |
| GGCGAAAGGAGCCACGAAGA+AGG | - | chr5.3:15071767-15071786 | MS.gene83494:CDS | 60.0% | |
| !! | GTGACGAGCAAGAGTACCGG+AGG | - | chr5.3:15071852-15071871 | MS.gene83494:intron | 60.0% |
| AAGAAGGCGGCTGCATCCGC+CGG | - | chr5.3:15071783-15071802 | MS.gene83494:CDS | 65.0% | |
| GGATGCAGCCGCCTTCTTCG+TGG | + | chr5.3:15071781-15071800 | None:intergenic | 65.0% | |
| GGTTGTGGATGCAGCTCCGG+CGG | + | chr5.3:15071802-15071821 | None:intergenic | 65.0% | |
| CTAATGGCGGCGGCGGCGAA+AGG | - | chr5.3:15071753-15071772 | MS.gene83494:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 15071711 | 15073264 | 15071711 | ID=MS.gene83494 |
| chr5.3 | mRNA | 15071711 | 15073264 | 15071711 | ID=MS.gene83494.t1;Parent=MS.gene83494 |
| chr5.3 | exon | 15072983 | 15073264 | 15072983 | ID=MS.gene83494.t1.exon1;Parent=MS.gene83494.t1 |
| chr5.3 | CDS | 15072983 | 15073264 | 15072983 | ID=cds.MS.gene83494.t1;Parent=MS.gene83494.t1 |
| chr5.3 | exon | 15071711 | 15071836 | 15071711 | ID=MS.gene83494.t1.exon2;Parent=MS.gene83494.t1 |
| chr5.3 | CDS | 15071711 | 15071836 | 15071711 | ID=cds.MS.gene83494.t1;Parent=MS.gene83494.t1 |
| Gene Sequence |
| Protein sequence |
