Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83643.t1 | XP_003619448.1 | 85.5 | 248 | 23 | 2 | 1 | 248 | 1 | 235 | 1.20E-107 | 399.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83643.t1 | Q9XFM6 | 65.3 | 199 | 67 | 2 | 1 | 197 | 1 | 199 | 1.1e-66 | 254.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83643.t1 | G7KLJ7 | 85.5 | 248 | 23 | 2 | 1 | 248 | 1 | 235 | 8.6e-108 | 399.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050971 | MS.gene83643 | -0.839648 | 1.40E-57 | -1.69E-46 |
MS.gene052077 | MS.gene83643 | -0.811667 | 6.24E-51 | -1.69E-46 |
MS.gene058503 | MS.gene83643 | -0.802705 | 4.94E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83643.t1 | MTR_6g054890 | 90.726 | 248 | 10 | 2 | 1 | 248 | 1 | 235 | 1.13e-162 | 449 |
MS.gene83643.t1 | MTR_1g100727 | 65.587 | 247 | 55 | 5 | 2 | 247 | 3 | 220 | 5.08e-105 | 303 |
MS.gene83643.t1 | MTR_6g027160 | 50.000 | 158 | 71 | 2 | 18 | 168 | 17 | 173 | 2.12e-49 | 161 |
MS.gene83643.t1 | MTR_3g105860 | 54.639 | 97 | 44 | 0 | 72 | 168 | 2 | 98 | 1.16e-33 | 117 |
MS.gene83643.t1 | MTR_3g081290 | 38.947 | 95 | 58 | 0 | 74 | 168 | 36 | 130 | 1.32e-16 | 76.6 |
MS.gene83643.t1 | MTR_6g027060 | 53.333 | 60 | 28 | 0 | 107 | 166 | 27 | 86 | 3.24e-16 | 72.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83643.t1 | AT5G52240 | 65.327 | 199 | 67 | 2 | 1 | 197 | 1 | 199 | 6.05e-90 | 265 |
MS.gene83643.t1 | AT3G48890 | 62.500 | 216 | 66 | 4 | 1 | 205 | 1 | 212 | 8.40e-89 | 263 |
MS.gene83643.t1 | AT5G52240 | 72.515 | 171 | 45 | 2 | 1 | 169 | 1 | 171 | 1.02e-85 | 253 |
MS.gene83643.t1 | AT2G24940 | 49.485 | 97 | 49 | 0 | 72 | 168 | 2 | 98 | 7.05e-28 | 102 |
MS.gene83643.t1 | AT4G14965 | 33.333 | 150 | 79 | 4 | 19 | 168 | 9 | 137 | 3.66e-16 | 75.9 |
MS.gene83643.t1 | AT4G14965 | 33.553 | 152 | 79 | 5 | 19 | 170 | 9 | 138 | 2.08e-15 | 72.8 |
Find 66 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCTCTTCTTATGGCTATTA+AGG | 0.121148 | 6.3:-51798535 | MS.gene83643:CDS |
AGATTGGGAATACAAGTTTA+TGG | 0.246130 | 6.3:-51794879 | MS.gene83643:CDS |
GCCATAAGAAGAGGCTTATC+AGG | 0.272018 | 6.3:+51798543 | None:intergenic |
TAGCATCCTTCCCGGCAAAT+AGG | 0.286515 | 6.3:+51794990 | None:intergenic |
CCCTGATAAGCCTCTTCTTA+TGG | 0.307238 | 6.3:-51798544 | MS.gene83643:CDS |
TTGTACTTCCATGGCGTTGA+TGG | 0.315497 | 6.3:+51798658 | None:intergenic |
GGACCTTATGCCCTATTTGC+CGG | 0.321058 | 6.3:-51795001 | MS.gene83643:CDS |
CCTCTTCTTATGGCTATTAA+GGG | 0.334021 | 6.3:-51798534 | MS.gene83643:CDS |
GATTGGGAATACAAGTTTAT+GGG | 0.351933 | 6.3:-51794878 | MS.gene83643:CDS |
AACTCGAGGCCTTGCAAGAT+TGG | 0.357451 | 6.3:-51794895 | MS.gene83643:CDS |
GGAGAGTGAAGAACGTTGTT+GGG | 0.357652 | 6.3:+51798739 | None:intergenic |
AAACCATGGCACTTCAACTA+TGG | 0.369321 | 6.3:-51798803 | None:intergenic |
GTGGATGCTGGTTTAGTTGC+TGG | 0.372746 | 6.3:+51794818 | None:intergenic |
AAGAGACTTTGCTGCTGAAA+TGG | 0.381552 | 6.3:-51798637 | MS.gene83643:CDS |
TACATCATCACAAGCCTATT+CGG | 0.384924 | 6.3:-51798693 | MS.gene83643:CDS |
TGCAAGGCCTCGAGTTCAAA+TGG | 0.392186 | 6.3:+51794902 | None:intergenic |
CGCTCTGCTAGCATCCTTCC+CGG | 0.397245 | 6.3:+51794982 | None:intergenic |
TTATCTGCATCAACACTTGA+AGG | 0.401195 | 6.3:+51794620 | None:intergenic |
GACTACTATGGCTTCTTTGA+AGG | 0.414638 | 6.3:+51798776 | None:intergenic |
AGCATCCTTCCCGGCAAATA+GGG | 0.423670 | 6.3:+51794991 | None:intergenic |
ATCTGAACAGGTGGTTTAAG+AGG | 0.436047 | 6.3:+51798612 | None:intergenic |
ACTCGAGGCCTTGCAAGATT+GGG | 0.451994 | 6.3:-51794894 | MS.gene83643:CDS |
GTAACTTCACCGATCTGAAC+AGG | 0.455668 | 6.3:+51798600 | None:intergenic |
GATCTAACCGGAGACATATC+AGG | 0.457965 | 6.3:-51794932 | MS.gene83643:CDS |
GAAGGTTCACCGGTGGATGC+TGG | 0.459222 | 6.3:+51794806 | None:intergenic |
AGGAGAGTGAAGAACGTTGT+TGG | 0.461819 | 6.3:+51798738 | None:intergenic |
GACCTTATGCCCTATTTGCC+GGG | 0.468252 | 6.3:-51795000 | MS.gene83643:CDS |
TTCCCGGCAAATAGGGCATA+AGG | 0.473620 | 6.3:+51794998 | None:intergenic |
ACCGGAGACATATCAGGTCT+TGG | 0.480853 | 6.3:-51794926 | MS.gene83643:CDS |
AGTTACTGAAGAAGAACTTA+AGG | 0.482409 | 6.3:-51798583 | MS.gene83643:CDS |
GGGTATCTGAGGAACCGAAT+AGG | 0.486037 | 6.3:+51798679 | None:intergenic |
TGTACTTCCATGGCGTTGAT+GGG | 0.492424 | 6.3:+51798659 | None:intergenic |
TTTGAAGAGAAAGATCTAAC+CGG | 0.497111 | 6.3:-51794944 | MS.gene83643:CDS |
TCTATGATGTTTCTCAAAGC+AGG | 0.504107 | 6.3:-51798506 | MS.gene83643:intron |
ATGGGAAAGTACGTAAAGGT+TGG | 0.509504 | 6.3:-51794860 | MS.gene83643:CDS |
GAGGCCAGTGTAGACTACTA+TGG | 0.509582 | 6.3:+51798764 | None:intergenic |
AAGTGTTGATGCAGATAAAG+AGG | 0.518551 | 6.3:-51794615 | MS.gene83643:CDS |
TAGAAGCTTCAACAACATCA+TGG | 0.520744 | 6.3:+51794699 | None:intergenic |
TGAAGAACGTTGTTGGGGAG+AGG | 0.529925 | 6.3:+51798745 | None:intergenic |
CAAAGTCTCTTGTACTTCCA+TGG | 0.535643 | 6.3:+51798649 | None:intergenic |
GAAGAACTTAAGGATTATGA+TGG | 0.536243 | 6.3:-51798573 | MS.gene83643:CDS |
TGACCATAGTTGAAGTGCCA+TGG | 0.544016 | 6.3:+51798800 | None:intergenic |
GCAAGGCCTCGAGTTCAAAT+GGG | 0.554029 | 6.3:+51794903 | None:intergenic |
GCCAAGACCTGATATGTCTC+CGG | 0.558754 | 6.3:+51794925 | None:intergenic |
TTATGCCCTATTTGCCGGGA+AGG | 0.560061 | 6.3:-51794996 | MS.gene83643:CDS |
TTAACAGGTGCAGTTTCAGA+AGG | 0.571648 | 6.3:+51794659 | None:intergenic |
AGTTGATTCTGAAGGTTCAC+CGG | 0.572919 | 6.3:+51794796 | None:intergenic |
CTTGTATTCCCAATCTTGCA+AGG | 0.573953 | 6.3:+51794886 | None:intergenic |
CCCTTAATAGCCATAAGAAG+AGG | 0.575683 | 6.3:+51798534 | None:intergenic |
TTACGAGAAGTTGATTCTGA+AGG | 0.576686 | 6.3:+51794788 | None:intergenic |
GTAGTAGAGTGTGAAGAGAA+TGG | 0.577698 | 6.3:+51798713 | None:intergenic |
TCTTGGCCCATTTGAACTCG+AGG | 0.581468 | 6.3:-51794909 | MS.gene83643:CDS |
CTTAAACCACCTGTTCAGAT+CGG | 0.598824 | 6.3:-51798609 | MS.gene83643:CDS |
CCATAAGAAGAGGCTTATCA+GGG | 0.603905 | 6.3:+51798544 | None:intergenic |
GTTTATGGGAAAGTACGTAA+AGG | 0.604681 | 6.3:-51794864 | MS.gene83643:CDS |
TAGAAGCTTCAGCAGTGTGG+CGG | 0.609561 | 6.3:+51794735 | None:intergenic |
TCAGATACCCATCAACGCCA+TGG | 0.610793 | 6.3:-51798666 | MS.gene83643:CDS |
GAGAGTGAAGAACGTTGTTG+GGG | 0.620338 | 6.3:+51798740 | None:intergenic |
TGATTCTGAAGGTTCACCGG+TGG | 0.622007 | 6.3:+51794799 | None:intergenic |
GCAACTAAACCAGCATCCAC+CGG | 0.627683 | 6.3:-51794815 | MS.gene83643:CDS |
GAAGCCATAGTAGTCTACAC+TGG | 0.649365 | 6.3:-51798768 | MS.gene83643:CDS |
AGAGTGTGAAGAGAATGGCG+AGG | 0.652365 | 6.3:+51798718 | None:intergenic |
ATGGCGTTGATGGGTATCTG+AGG | 0.654869 | 6.3:+51798668 | None:intergenic |
AATAGGGCATAAGGTCCACC+CGG | 0.663060 | 6.3:+51795007 | None:intergenic |
GTGTAGAAGCTTCAGCAGTG+TGG | 0.680329 | 6.3:+51794732 | None:intergenic |
ACTTCACCGATCTGAACAGG+TGG | 0.700649 | 6.3:+51798603 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTTAAAAATACCAATT+TGG | + | chr6.3:51796227-51796246 | None:intergenic | 10.0% |
!! | ATCAAAAAAACAAAAAAAAA+AGG | + | chr6.3:51794953-51794972 | None:intergenic | 10.0% |
!! | ATTAGATATAAATTAAAAAG+TGG | - | chr6.3:51796379-51796398 | MS.gene83643:intron | 10.0% |
!! | GTTAATAATAAAATTATGAA+AGG | + | chr6.3:51795910-51795929 | None:intergenic | 10.0% |
!! | TAAATGATTAAATAACAAAT+TGG | + | chr6.3:51796284-51796303 | None:intergenic | 10.0% |
!! | TAATAATAAAATTATGAAAG+GGG | + | chr6.3:51795908-51795927 | None:intergenic | 10.0% |
!!! | AAATTGATTTTAGTTAAAAT+TGG | - | chr6.3:51795691-51795710 | MS.gene83643:intron | 10.0% |
!!! | AATTGATTTTAGTTAAAATT+GGG | - | chr6.3:51795692-51795711 | MS.gene83643:intron | 10.0% |
!!! | TAAGATAAATAATTTGTATT+TGG | - | chr6.3:51795234-51795253 | MS.gene83643:intron | 10.0% |
!! | AAAATCACAAAAAACAAAAA+GGG | + | chr6.3:51794981-51795000 | None:intergenic | 15.0% |
!! | ATATAAATTAAAAAGTGGTT+AGG | - | chr6.3:51796384-51796403 | MS.gene83643:intron | 15.0% |
!! | TAATCAAATAGATTATTGTT+GGG | - | chr6.3:51796256-51796275 | MS.gene83643:intron | 15.0% |
!! | TATTCAATATTTGACAATAA+TGG | + | chr6.3:51798092-51798111 | None:intergenic | 15.0% |
!!! | ATTCTATTGATTTTTCTTTT+TGG | - | chr6.3:51798309-51798328 | MS.gene83643:intron | 15.0% |
!!! | ATTTTAACGATAGATTTTTT+AGG | - | chr6.3:51796144-51796163 | MS.gene83643:intron | 15.0% |
!!! | CACATTTGATATTTTTTTAA+AGG | + | chr6.3:51796111-51796130 | None:intergenic | 15.0% |
!!! | TTTTAACGATAGATTTTTTA+GGG | - | chr6.3:51796145-51796164 | MS.gene83643:intron | 15.0% |
!! | AAAAATTTAGTCTCAAATCT+AGG | + | chr6.3:51797328-51797347 | None:intergenic | 20.0% |
!! | AAAATGGAAGATTGAATAAA+TGG | + | chr6.3:51796958-51796977 | None:intergenic | 20.0% |
!! | AAGGTAAAATGATTTATGTT+TGG | + | chr6.3:51795599-51795618 | None:intergenic | 20.0% |
!! | AATCAAATAGATTATTGTTG+GGG | - | chr6.3:51796257-51796276 | MS.gene83643:intron | 20.0% |
!! | ATTATAGTGAACAAGAAAAA+AGG | + | chr6.3:51797941-51797960 | None:intergenic | 20.0% |
!! | ATTGAAATTGAATCAATTCA+TGG | + | chr6.3:51796609-51796628 | None:intergenic | 20.0% |
!! | CAAAAACAATAAAAATTGAG+AGG | + | chr6.3:51798068-51798087 | None:intergenic | 20.0% |
!! | CAAAATCACAAAAAACAAAA+AGG | + | chr6.3:51794982-51795001 | None:intergenic | 20.0% |
!! | CATAGACTAATTTATGTATT+AGG | + | chr6.3:51796706-51796725 | None:intergenic | 20.0% |
!! | GATTCATACCAAAAAAAAAA+TGG | + | chr6.3:51797687-51797706 | None:intergenic | 20.0% |
!! | GTAATCAAATAGATTATTGT+TGG | - | chr6.3:51796255-51796274 | MS.gene83643:intron | 20.0% |
!! | TCAAATTAGTCCATAATAAT+TGG | + | chr6.3:51796181-51796200 | None:intergenic | 20.0% |
!! | TCATTTAAGTCTCTTATATA+AGG | - | chr6.3:51797705-51797724 | MS.gene83643:intron | 20.0% |
!! | TTAACAAAAATCTGTCAAAA+AGG | + | chr6.3:51796479-51796498 | None:intergenic | 20.0% |
!! | TTGAAAATTGTCAAATTATC+AGG | + | chr6.3:51796004-51796023 | None:intergenic | 20.0% |
!!! | AAATAACAGAAATGTGTTTT+TGG | + | chr6.3:51795810-51795829 | None:intergenic | 20.0% |
!!! | AAATGAACCAAAATTGATTT+TGG | + | chr6.3:51795418-51795437 | None:intergenic | 20.0% |
!!! | AACACATTTCTGTTATTTTT+TGG | - | chr6.3:51795812-51795831 | MS.gene83643:intron | 20.0% |
!!! | AATAACAGAAATGTGTTTTT+GGG | + | chr6.3:51795809-51795828 | None:intergenic | 20.0% |
!!! | AATATGTTTTTATGTTTCTC+AGG | + | chr6.3:51796083-51796102 | None:intergenic | 20.0% |
!!! | AATGAAGTCATTTTCAATTA+CGG | + | chr6.3:51796443-51796462 | None:intergenic | 20.0% |
!!! | ACACATTTCTGTTATTTTTT+GGG | - | chr6.3:51795813-51795832 | MS.gene83643:intron | 20.0% |
!!! | AGTTTTTATTCTATGTTTAG+AGG | - | chr6.3:51796879-51796898 | MS.gene83643:intron | 20.0% |
!!! | ATATGTTTTTATGTTTCTCA+GGG | + | chr6.3:51796082-51796101 | None:intergenic | 20.0% |
!!! | CTTTTTGTTTTTTGTGATTT+TGG | - | chr6.3:51794980-51794999 | MS.gene83643:CDS | 20.0% |
!!! | GTATTTTACTCCAATTATTA+TGG | - | chr6.3:51796168-51796187 | MS.gene83643:intron | 20.0% |
!!! | GTTTTCATCCATTTTTTTTT+TGG | - | chr6.3:51797676-51797695 | MS.gene83643:intron | 20.0% |
!!! | TAGTTTGTTTTATGATCTTT+TGG | - | chr6.3:51795139-51795158 | MS.gene83643:intron | 20.0% |
!!! | TGATTATGTAAAATTGATTC+TGG | + | chr6.3:51795640-51795659 | None:intergenic | 20.0% |
!!! | TTTAACGATAGATTTTTTAG+GGG | - | chr6.3:51796146-51796165 | MS.gene83643:intron | 20.0% |
!!! | TTTTCTACTTTTTACTCTAA+CGG | - | chr6.3:51796642-51796661 | MS.gene83643:intron | 20.0% |
! | AAAATTAAATGAAGGGTTGT+TGG | + | chr6.3:51797091-51797110 | None:intergenic | 25.0% |
! | AAACAATAAAAATTGAGAGG+TGG | + | chr6.3:51798065-51798084 | None:intergenic | 25.0% |
! | AACAATAAAAATTGAGAGGT+GGG | + | chr6.3:51798064-51798083 | None:intergenic | 25.0% |
! | AGAAAAGTGATTATTGTGTT+AGG | + | chr6.3:51797361-51797380 | None:intergenic | 25.0% |
! | AGAGTAAAAAGTAGAAAAAG+TGG | + | chr6.3:51796640-51796659 | None:intergenic | 25.0% |
! | AGATAAATCATGTGTATCTT+TGG | + | chr6.3:51795451-51795470 | None:intergenic | 25.0% |
! | ATTTGGATAGATTGATGTAA+AGG | - | chr6.3:51795251-51795270 | MS.gene83643:intron | 25.0% |
! | CAAAAAAAAGAAGGCTTATT+TGG | - | chr6.3:51796055-51796074 | MS.gene83643:intron | 25.0% |
! | CAAAAACAATTGTACATCTA+TGG | + | chr6.3:51795550-51795569 | None:intergenic | 25.0% |
! | GCTAAAATTGAGTTAGTTAA+AGG | + | chr6.3:51795618-51795637 | None:intergenic | 25.0% |
! | TACATGAAAATCATTGCAAA+AGG | - | chr6.3:51798277-51798296 | MS.gene83643:intron | 25.0% |
! | TTGGATAATAAGTGGAAATT+TGG | + | chr6.3:51797632-51797651 | None:intergenic | 25.0% |
! | TTGGTTAATAAGTGGAAATA+TGG | + | chr6.3:51796793-51796812 | None:intergenic | 25.0% |
!! | AGAATTGATTCTGACATATT+TGG | + | chr6.3:51795389-51795408 | None:intergenic | 25.0% |
!! | ATATATTTTCTATGCCACAA+AGG | + | chr6.3:51796580-51796599 | None:intergenic | 25.0% |
!! | TAGGTTGGAATTCAAAAATA+GGG | + | chr6.3:51797568-51797587 | None:intergenic | 25.0% |
!! | TCTTTTATCAGGATGTTTTA+TGG | - | chr6.3:51798377-51798396 | MS.gene83643:intron | 25.0% |
!! | TTCAGTTCTAGTCAAATTAA+GGG | - | chr6.3:51797380-51797399 | MS.gene83643:intron | 25.0% |
!!! | AACACTTTTAAAGTCCAAAT+TGG | - | chr6.3:51796210-51796229 | MS.gene83643:intron | 25.0% |
!!! | AAGTAGCAATTTGTTACTTT+AGG | + | chr6.3:51797965-51797984 | None:intergenic | 25.0% |
!!! | AATTTTGGTTCATTTAGAAG+TGG | - | chr6.3:51795423-51795442 | MS.gene83643:intron | 25.0% |
!!! | ACAATTGTTTTTGAGATGTT+TGG | - | chr6.3:51795557-51795576 | MS.gene83643:intron | 25.0% |
!!! | ATAAGCCTTCTTTTTTTTGT+CGG | + | chr6.3:51796054-51796073 | None:intergenic | 25.0% |
!!! | ATCTTCCATTTTTCAATGTT+TGG | - | chr6.3:51796309-51796328 | MS.gene83643:intron | 25.0% |
!!! | ATTTTTTTCAGCTGAATATG+CGG | - | chr6.3:51795054-51795073 | MS.gene83643:intron | 25.0% |
!!! | GATTTTGATTAAGAAGAAAG+TGG | - | chr6.3:51797030-51797049 | MS.gene83643:intron | 25.0% |
!!! | GTATTTTCATCACTTTTAAC+AGG | + | chr6.3:51798767-51798786 | None:intergenic | 25.0% |
!!! | TTATCTGATTTTAGTGTCTT+AGG | - | chr6.3:51795465-51795484 | MS.gene83643:intron | 25.0% |
!!! | TTTTTGTGATTTTGGAATCT+GGG | - | chr6.3:51794988-51795007 | MS.gene83643:CDS | 25.0% |
!!! | TTTTTTGTGATTTTGGAATC+TGG | - | chr6.3:51794987-51795006 | MS.gene83643:CDS | 25.0% |
AAATACCCAGAAAAGCAAAA+AGG | + | chr6.3:51795038-51795057 | None:intergenic | 30.0% | |
AACAGTATATTGTGCTACAA+GGG | + | chr6.3:51797246-51797265 | None:intergenic | 30.0% | |
ACAAAAATCTGTCAAAAAGG+TGG | + | chr6.3:51796476-51796495 | None:intergenic | 30.0% | |
ACAATAAAAATTGAGAGGTG+GGG | + | chr6.3:51798063-51798082 | None:intergenic | 30.0% | |
AGATTGGGAATACAAGTTTA+TGG | - | chr6.3:51798529-51798548 | MS.gene83643:CDS | 30.0% | |
AGTTACTGAAGAAGAACTTA+AGG | - | chr6.3:51794825-51794844 | MS.gene83643:CDS | 30.0% | |
ATTTGAAGATTGGAATTGGT+GGG | - | chr6.3:51795943-51795962 | MS.gene83643:intron | 30.0% | |
CTTGAAATGCATATTCTACT+TGG | - | chr6.3:51798156-51798175 | MS.gene83643:intron | 30.0% | |
GAAGAACTTAAGGATTATGA+TGG | - | chr6.3:51794835-51794854 | MS.gene83643:CDS | 30.0% | |
GACAATAATTTCTTAAAGGG+AGG | + | chr6.3:51798040-51798059 | None:intergenic | 30.0% | |
GATGATTTGAAGATTGGAAT+TGG | - | chr6.3:51795939-51795958 | MS.gene83643:intron | 30.0% | |
GATTAAGAAGAAAGTGGTTA+AGG | - | chr6.3:51797036-51797055 | MS.gene83643:intron | 30.0% | |
GATTGGGAATACAAGTTTAT+GGG | - | chr6.3:51798530-51798549 | MS.gene83643:CDS | 30.0% | |
GCTACATATGTAATCAAAAG+AGG | - | chr6.3:51795862-51795881 | MS.gene83643:intron | 30.0% | |
GGATGAAAACCTTGAATTAT+TGG | + | chr6.3:51797666-51797685 | None:intergenic | 30.0% | |
GGGGACAATAATTTCTTAAA+GGG | + | chr6.3:51798043-51798062 | None:intergenic | 30.0% | |
TAACAGTATATTGTGCTACA+AGG | + | chr6.3:51797247-51797266 | None:intergenic | 30.0% | |
TAACATTAAGTCTCAAATCC+AGG | + | chr6.3:51796673-51796692 | None:intergenic | 30.0% | |
TTTGAAGAGAAAGATCTAAC+CGG | - | chr6.3:51798464-51798483 | MS.gene83643:intron | 30.0% | |
! | AAATTAGTCTATGTCACTTC+TGG | - | chr6.3:51796713-51796732 | MS.gene83643:intron | 30.0% |
! | ACCTATCCTTTTCAAACTAA+GGG | - | chr6.3:51796928-51796947 | MS.gene83643:intron | 30.0% |
! | AGCTTTGATGATTTGAAGAT+TGG | - | chr6.3:51795933-51795952 | MS.gene83643:intron | 30.0% |
! | CTAGGTTGGAATTCAAAAAT+AGG | + | chr6.3:51797569-51797588 | None:intergenic | 30.0% |
! | CTTCAGTTCTAGTCAAATTA+AGG | - | chr6.3:51797379-51797398 | MS.gene83643:intron | 30.0% |
! | CTTTTGCTTATTGAACAACT+TGG | + | chr6.3:51796818-51796837 | None:intergenic | 30.0% |
! | GTTTAAAGAATTGATTCTGC+CGG | + | chr6.3:51795342-51795361 | None:intergenic | 30.0% |
! | TACACCTCCAAAATCAATTT+TGG | - | chr6.3:51795408-51795427 | MS.gene83643:intron | 30.0% |
! | TACCTATCCTTTTCAAACTA+AGG | - | chr6.3:51796927-51796946 | MS.gene83643:intron | 30.0% |
! | TAGTCTAAAAATTAGTCTGC+TGG | - | chr6.3:51797586-51797605 | MS.gene83643:intron | 30.0% |
! | TGCAATGATTTTCATGTACA+TGG | + | chr6.3:51798275-51798294 | None:intergenic | 30.0% |
! | TGTTTTCTGCAATGATTGTT+TGG | - | chr6.3:51795495-51795514 | MS.gene83643:intron | 30.0% |
!! | AGCAGACTAATTTTTAGACT+AGG | + | chr6.3:51797587-51797606 | None:intergenic | 30.0% |
!! | ATAGAACCTTTTTGCTTTTC+TGG | - | chr6.3:51795029-51795048 | MS.gene83643:intron | 30.0% |
!! | GACTAATTTTTAGACTAGGT+TGG | + | chr6.3:51797583-51797602 | None:intergenic | 30.0% |
!! | TAGAACCTTTTTGCTTTTCT+GGG | - | chr6.3:51795030-51795049 | MS.gene83643:intron | 30.0% |
!! | TCTTCCATTTTTCAATGTTC+TGG | - | chr6.3:51796967-51796986 | MS.gene83643:intron | 30.0% |
!! | TGAACCAAAATTGATTTTGG+AGG | + | chr6.3:51795415-51795434 | None:intergenic | 30.0% |
!!! | ATTTTTAAGACCTAATGTGC+AGG | - | chr6.3:51797773-51797792 | MS.gene83643:intron | 30.0% |
!!! | CTGTTATTTTTTGGGATCTT+GGG | - | chr6.3:51795821-51795840 | MS.gene83643:intron | 30.0% |
!!! | TAAGCCTTCTTTTTTTTGTC+GGG | + | chr6.3:51796053-51796072 | None:intergenic | 30.0% |
!!! | TCTGTTATTTTTTGGGATCT+TGG | - | chr6.3:51795820-51795839 | MS.gene83643:intron | 30.0% |
AAACTAAGTAAGCCCTAATG+AGG | + | chr6.3:51796357-51796376 | None:intergenic | 35.0% | |
AAAGGATGCAAGAATGAAGA+AGG | + | chr6.3:51797923-51797942 | None:intergenic | 35.0% | |
AAATCAAGCAAAGCCTAATG+AGG | + | chr6.3:51797015-51797034 | None:intergenic | 35.0% | |
AAATTGGGATGAATGTGAAG+TGG | - | chr6.3:51795707-51795726 | MS.gene83643:intron | 35.0% | |
AAGAATGAAGAAGGAAACGT+GGG | + | chr6.3:51797914-51797933 | None:intergenic | 35.0% | |
AAGTTAAAGCCACGTAATAC+TGG | + | chr6.3:51796515-51796534 | None:intergenic | 35.0% | |
AATACCACCATTTGAAAGCT+CGG | + | chr6.3:51797492-51797511 | None:intergenic | 35.0% | |
ATGATTTCCGAGCTTTCAAA+TGG | - | chr6.3:51797482-51797501 | MS.gene83643:intron | 35.0% | |
ATTATTGGACAACTTGGTCT+TGG | + | chr6.3:51797651-51797670 | None:intergenic | 35.0% | |
ATTTCTTAAAGGGAGGTCAA+AGG | + | chr6.3:51798033-51798052 | None:intergenic | 35.0% | |
CAATAAAAATTGAGAGGTGG+GGG | + | chr6.3:51798062-51798081 | None:intergenic | 35.0% | |
CAGAGGAAGAAAAAGTTGTT+TGG | + | chr6.3:51797298-51797317 | None:intergenic | 35.0% | |
CCAAGTTGTCCAATAATTCA+AGG | - | chr6.3:51797654-51797673 | MS.gene83643:intron | 35.0% | |
CCTCTTCTTATGGCTATTAA+GGG | - | chr6.3:51794874-51794893 | MS.gene83643:CDS | 35.0% | |
CCTTGAATTATTGGACAACT+TGG | + | chr6.3:51797657-51797676 | None:intergenic | 35.0% | |
CTTATTGAACAACTTGGTCT+TGG | + | chr6.3:51796812-51796831 | None:intergenic | 35.0% | |
GATTTGAAGATTGGAATTGG+TGG | - | chr6.3:51795942-51795961 | MS.gene83643:intron | 35.0% | |
GGGGGACAATAATTTCTTAA+AGG | + | chr6.3:51798044-51798063 | None:intergenic | 35.0% | |
GGTTGGAACTATCAAAAAGT+CGG | - | chr6.3:51798565-51798584 | MS.gene83643:CDS | 35.0% | |
GTGGACCAAACATTGAAAAA+TGG | + | chr6.3:51796317-51796336 | None:intergenic | 35.0% | |
GTTCTAGTCAAATTAAGGGT+TGG | - | chr6.3:51797384-51797403 | MS.gene83643:intron | 35.0% | |
TAAGAAGAAAGTGGTTAAGG+TGG | - | chr6.3:51797039-51797058 | MS.gene83643:intron | 35.0% | |
TACATCATCACAAGCCTATT+CGG | - | chr6.3:51794715-51794734 | MS.gene83643:CDS | 35.0% | |
TAGAAGCTTCAACAACATCA+TGG | + | chr6.3:51798712-51798731 | None:intergenic | 35.0% | |
TCTATGATGTTTCTCAAAGC+AGG | - | chr6.3:51794902-51794921 | MS.gene83643:CDS | 35.0% | |
TGGACCAGAACATTGAAAAA+TGG | + | chr6.3:51796974-51796993 | None:intergenic | 35.0% | |
TTATCTGCATCAACACTTGA+AGG | + | chr6.3:51798791-51798810 | None:intergenic | 35.0% | |
TTGTCCCGACAAAAAAAAGA+AGG | - | chr6.3:51796046-51796065 | MS.gene83643:intron | 35.0% | |
! | ACAACATCATGGTTTTCATG+AGG | + | chr6.3:51798701-51798720 | None:intergenic | 35.0% |
! | ACCCTTAGTTTGAAAAGGAT+AGG | + | chr6.3:51796932-51796951 | None:intergenic | 35.0% |
! | ATCCTTTTCAAACTAAGGGT+TGG | - | chr6.3:51796932-51796951 | MS.gene83643:intron | 35.0% |
! | GTTTATGGGAAAGTACGTAA+AGG | - | chr6.3:51798544-51798563 | MS.gene83643:CDS | 35.0% |
! | TAGAGGTCTTAGCTTTCTTT+AGG | - | chr6.3:51796896-51796915 | MS.gene83643:intron | 35.0% |
! | TATCAGGATGTTTTATGGAC+CGG | - | chr6.3:51798382-51798401 | MS.gene83643:intron | 35.0% |
! | TTACGAGAAGTTGATTCTGA+AGG | + | chr6.3:51798623-51798642 | None:intergenic | 35.0% |
!! | AAGTGTTGATGCAGATAAAG+AGG | - | chr6.3:51798793-51798812 | MS.gene83643:CDS | 35.0% |
!! | ACTTGGTCTTGGATAATAAG+TGG | + | chr6.3:51797640-51797659 | None:intergenic | 35.0% |
!! | ACTTGGTCTTGGTTAATAAG+TGG | + | chr6.3:51796801-51796820 | None:intergenic | 35.0% |
!! | ATTTTTGACTCCTCCAAAAG+TGG | + | chr6.3:51795523-51795542 | None:intergenic | 35.0% |
!! | GTGTTGTTTGTCAATGTGTT+AGG | - | chr6.3:51797799-51797818 | MS.gene83643:intron | 35.0% |
!! | TATGTTTGGTTCTACTCTAG+CGG | + | chr6.3:51795585-51795604 | None:intergenic | 35.0% |
!! | TGATTGTTTGGTTCCACTTT+TGG | - | chr6.3:51795507-51795526 | MS.gene83643:intron | 35.0% |
!!! | GTGTTTTTGGGTTCATATCA+TGG | + | chr6.3:51795797-51795816 | None:intergenic | 35.0% |
!!! | TCAGAAGGAGTATTTTCATG+AGG | + | chr6.3:51798737-51798756 | None:intergenic | 35.0% |
!!! | TGCGGTTAAGGTTTTTTTCT+TGG | - | chr6.3:51795072-51795091 | MS.gene83643:intron | 35.0% |
AAAGGGAGGTCAAAGGTAAA+CGG | + | chr6.3:51798026-51798045 | None:intergenic | 40.0% | |
AAGAGACTTTGCTGCTGAAA+TGG | - | chr6.3:51794771-51794790 | MS.gene83643:CDS | 40.0% | |
AAGCTACAAATCCTAGCTTC+CGG | - | chr6.3:51795320-51795339 | MS.gene83643:intron | 40.0% | |
ACAACACATACCTGCACATT+AGG | + | chr6.3:51797786-51797805 | None:intergenic | 40.0% | |
ATCTGAACAGGTGGTTTAAG+AGG | + | chr6.3:51794799-51794818 | None:intergenic | 40.0% | |
ATTTCCGAGCTTTCAAATGG+TGG | - | chr6.3:51797485-51797504 | MS.gene83643:intron | 40.0% | |
CAAAGTCTCTTGTACTTCCA+TGG | + | chr6.3:51794762-51794781 | None:intergenic | 40.0% | |
CAAATCACACCAGTATTACG+TGG | - | chr6.3:51796503-51796522 | MS.gene83643:intron | 40.0% | |
CAAGAATGAAGAAGGAAACG+TGG | + | chr6.3:51797915-51797934 | None:intergenic | 40.0% | |
CAATTAGTAGACACAGCTCA+TGG | - | chr6.3:51798117-51798136 | MS.gene83643:intron | 40.0% | |
CATGACAAGTAAGGAGGAAT+AGG | - | chr6.3:51797738-51797757 | MS.gene83643:intron | 40.0% | |
CCATAAGAAGAGGCTTATCA+GGG | + | chr6.3:51794867-51794886 | None:intergenic | 40.0% | |
CCCTTAATAGCCATAAGAAG+AGG | + | chr6.3:51794877-51794896 | None:intergenic | 40.0% | |
CCTGATAAAAGACACATCAC+AGG | + | chr6.3:51798369-51798388 | None:intergenic | 40.0% | |
CTATGCCACAAAGGTCTATT+TGG | + | chr6.3:51796571-51796590 | None:intergenic | 40.0% | |
CTTAAACCACCTGTTCAGAT+CGG | - | chr6.3:51794799-51794818 | MS.gene83643:CDS | 40.0% | |
CTTGTATTCCCAATCTTGCA+AGG | + | chr6.3:51798525-51798544 | None:intergenic | 40.0% | |
GACTACTATGGCTTCTTTGA+AGG | + | chr6.3:51794635-51794654 | None:intergenic | 40.0% | |
GATGTTTCTCAAAGCAGGTA+TGG | - | chr6.3:51794907-51794926 | MS.gene83643:CDS | 40.0% | |
GCCTCTTCTTATGGCTATTA+AGG | - | chr6.3:51794873-51794892 | MS.gene83643:CDS | 40.0% | |
GTAGTAGAGTGTGAAGAGAA+TGG | + | chr6.3:51794698-51794717 | None:intergenic | 40.0% | |
GTATGTGTGCATGACAAGTA+AGG | - | chr6.3:51797729-51797748 | MS.gene83643:intron | 40.0% | |
GTCAACCAAATAGACCTTTG+TGG | - | chr6.3:51796563-51796582 | MS.gene83643:intron | 40.0% | |
TTAACAGGTGCAGTTTCAGA+AGG | + | chr6.3:51798752-51798771 | None:intergenic | 40.0% | |
TTCAGCTGAATATGCGGTTA+AGG | - | chr6.3:51795060-51795079 | MS.gene83643:intron | 40.0% | |
TTTACTCTAACGGTCAATCC+TGG | - | chr6.3:51796652-51796671 | MS.gene83643:intron | 40.0% | |
! | AGTTGATTCTGAAGGTTCAC+CGG | + | chr6.3:51798615-51798634 | None:intergenic | 40.0% |
! | ATCAGGATGTTTTATGGACC+GGG | - | chr6.3:51798383-51798402 | MS.gene83643:intron | 40.0% |
! | ATGGGAAAGTACGTAAAGGT+TGG | - | chr6.3:51798548-51798567 | MS.gene83643:CDS | 40.0% |
! | CCTGTGATGTGTCTTTTATC+AGG | - | chr6.3:51798366-51798385 | MS.gene83643:intron | 40.0% |
! | TTTTGCATCCAACCCTTAGT+TGG | + | chr6.3:51796740-51796759 | None:intergenic | 40.0% |
!! | TTGTTTGGTTCCACTTTTGG+AGG | - | chr6.3:51795510-51795529 | MS.gene83643:intron | 40.0% |
AAGCAAAGCCTAATGAGGCT+AGG | + | chr6.3:51797010-51797029 | None:intergenic | 45.0% | |
AAGTAAGCCCTAATGAGGCT+AGG | + | chr6.3:51796352-51796371 | None:intergenic | 45.0% | |
AGGAGAGTGAAGAACGTTGT+TGG | + | chr6.3:51794673-51794692 | None:intergenic | 45.0% | |
CAAATCTAGGCTTGAGTCAG+AGG | + | chr6.3:51797315-51797334 | None:intergenic | 45.0% | |
CCCTGATAAGCCTCTTCTTA+TGG | - | chr6.3:51794864-51794883 | MS.gene83643:CDS | 45.0% | |
GAAGCCATAGTAGTCTACAC+TGG | - | chr6.3:51794640-51794659 | MS.gene83643:CDS | 45.0% | |
GAGAGTGAAGAACGTTGTTG+GGG | + | chr6.3:51794671-51794690 | None:intergenic | 45.0% | |
GATACCTCTAAGTGTGTGTC+TGG | + | chr6.3:51795755-51795774 | None:intergenic | 45.0% | |
GATCTAACCGGAGACATATC+AGG | - | chr6.3:51798476-51798495 | MS.gene83643:intron | 45.0% | |
GCCATAAGAAGAGGCTTATC+AGG | + | chr6.3:51794868-51794887 | None:intergenic | 45.0% | |
GGAAACGTGGGATCAAACTT+AGG | + | chr6.3:51797902-51797921 | None:intergenic | 45.0% | |
GGAGAGTGAAGAACGTTGTT+GGG | + | chr6.3:51794672-51794691 | None:intergenic | 45.0% | |
GTAACTTCACCGATCTGAAC+AGG | + | chr6.3:51794811-51794830 | None:intergenic | 45.0% | |
GTCACTTCTGGTCCAACTAA+GGG | - | chr6.3:51796725-51796744 | MS.gene83643:intron | 45.0% | |
TGAACCAGACACACACTTAG+AGG | - | chr6.3:51795748-51795767 | MS.gene83643:intron | 45.0% | |
TGTGTGCATGACAAGTAAGG+AGG | - | chr6.3:51797732-51797751 | MS.gene83643:intron | 45.0% | |
TTGTGCTACAAGGGTCTACT+TGG | + | chr6.3:51797237-51797256 | None:intergenic | 45.0% | |
! | AATTGATTCTGCCGGAAGCT+AGG | + | chr6.3:51795334-51795353 | None:intergenic | 45.0% |
! | GGCCAACCCTTAGTTTGAAA+AGG | + | chr6.3:51796937-51796956 | None:intergenic | 45.0% |
! | TGTCACTTCTGGTCCAACTA+AGG | - | chr6.3:51796724-51796743 | MS.gene83643:intron | 45.0% |
! | TTGTACTTCCATGGCGTTGA+TGG | + | chr6.3:51794753-51794772 | None:intergenic | 45.0% |
!! | TGTACTTCCATGGCGTTGAT+GGG | + | chr6.3:51794752-51794771 | None:intergenic | 45.0% |
!! | AAAAAAAAAAAATTAAATGA+AGG | + | chr6.3:51797099-51797118 | None:intergenic | 5.0% |
!! | AAAAAAAAAAATTAAATGAA+GGG | + | chr6.3:51797098-51797117 | None:intergenic | 5.0% |
!! | TTAATAATAAAATTATGAAA+GGG | + | chr6.3:51795909-51795928 | None:intergenic | 5.0% |
!!! | TTATTTTTTAACATAATTTT+TGG | + | chr6.3:51797523-51797542 | None:intergenic | 5.0% |
AACTCGAGGCCTTGCAAGAT+TGG | - | chr6.3:51798513-51798532 | MS.gene83643:CDS | 50.0% | |
AAGCCATTGTAGTCGCTGCT+CGG | - | chr6.3:51797541-51797560 | MS.gene83643:intron | 50.0% | |
AATAGGGCATAAGGTCCACC+CGG | + | chr6.3:51798404-51798423 | None:intergenic | 50.0% | |
ACCGGAGACATATCAGGTCT+TGG | - | chr6.3:51798482-51798501 | MS.gene83643:intron | 50.0% | |
ACTCGAGGCCTTGCAAGATT+GGG | - | chr6.3:51798514-51798533 | MS.gene83643:CDS | 50.0% | |
ACTTCACCGATCTGAACAGG+TGG | + | chr6.3:51794808-51794827 | None:intergenic | 50.0% | |
AGAGTGTGAAGAGAATGGCG+AGG | + | chr6.3:51794693-51794712 | None:intergenic | 50.0% | |
AGCATCCTTCCCGGCAAATA+GGG | + | chr6.3:51798420-51798439 | None:intergenic | 50.0% | |
CTGCTGTACCTAGCCTCATT+AGG | - | chr6.3:51796999-51797018 | MS.gene83643:intron | 50.0% | |
CTTCTGGTCCAACTAAGGGT+TGG | - | chr6.3:51796729-51796748 | MS.gene83643:intron | 50.0% | |
GACCTTATGCCCTATTTGCC+GGG | - | chr6.3:51798408-51798427 | MS.gene83643:intron | 50.0% | |
GAGGCCAGTGTAGACTACTA+TGG | + | chr6.3:51794647-51794666 | None:intergenic | 50.0% | |
GCAAGGCCTCGAGTTCAAAT+GGG | + | chr6.3:51798508-51798527 | None:intergenic | 50.0% | |
GCCAAGACCTGATATGTCTC+CGG | + | chr6.3:51798486-51798505 | None:intergenic | 50.0% | |
GGACCTTATGCCCTATTTGC+CGG | - | chr6.3:51798407-51798426 | MS.gene83643:intron | 50.0% | |
GGGTATCTGAGGAACCGAAT+AGG | + | chr6.3:51794732-51794751 | None:intergenic | 50.0% | |
GTGTAGAAGCTTCAGCAGTG+TGG | + | chr6.3:51798679-51798698 | None:intergenic | 50.0% | |
TAGAAGCTTCAGCAGTGTGG+CGG | + | chr6.3:51798676-51798695 | None:intergenic | 50.0% | |
TAGCATCCTTCCCGGCAAAT+AGG | + | chr6.3:51798421-51798440 | None:intergenic | 50.0% | |
TCAAGATGTCGTAGTGCAGC+TGG | + | chr6.3:51797992-51798011 | None:intergenic | 50.0% | |
TCAGATACCCATCAACGCCA+TGG | - | chr6.3:51794742-51794761 | MS.gene83643:CDS | 50.0% | |
TCTTGGCCCATTTGAACTCG+AGG | - | chr6.3:51798499-51798518 | MS.gene83643:intron | 50.0% | |
TGAAGAACGTTGTTGGGGAG+AGG | + | chr6.3:51794666-51794685 | None:intergenic | 50.0% | |
TGCAAGGCCTCGAGTTCAAA+TGG | + | chr6.3:51798509-51798528 | None:intergenic | 50.0% | |
TGCTGTGCCTAGCCTCATTA+GGG | - | chr6.3:51796342-51796361 | MS.gene83643:intron | 50.0% | |
TTATGCCCTATTTGCCGGGA+AGG | - | chr6.3:51798412-51798431 | MS.gene83643:intron | 50.0% | |
TTCCCGGCAAATAGGGCATA+AGG | + | chr6.3:51798413-51798432 | None:intergenic | 50.0% | |
! | AGGATGTTTTATGGACCGGG+TGG | - | chr6.3:51798386-51798405 | MS.gene83643:intron | 50.0% |
!! | ATGGCGTTGATGGGTATCTG+AGG | + | chr6.3:51794743-51794762 | None:intergenic | 50.0% |
CTGCTGTGCCTAGCCTCATT+AGG | - | chr6.3:51796341-51796360 | MS.gene83643:intron | 55.0% | |
GGCTAGGTACAGCAGAAGTG+TGG | + | chr6.3:51796994-51797013 | None:intergenic | 55.0% | |
! | GCAGTGTGGCGGTTTTCATG+AGG | + | chr6.3:51798665-51798684 | None:intergenic | 55.0% |
CGCTCTGCTAGCATCCTTCC+CGG | + | chr6.3:51798429-51798448 | None:intergenic | 60.0% | |
GGACCGAGCAGCGACTACAA+TGG | + | chr6.3:51797547-51797566 | None:intergenic | 60.0% | |
GGCTAGGCACAGCAGAAGTG+TGG | + | chr6.3:51796336-51796355 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 51794610 | 51798820 | 51794610 | ID=MS.gene83643 |
chr6.3 | mRNA | 51794610 | 51798820 | 51794610 | ID=MS.gene83643.t1;Parent=MS.gene83643 |
chr6.3 | exon | 51798507 | 51798820 | 51798507 | ID=MS.gene83643.t1.exon1;Parent=MS.gene83643.t1 |
chr6.3 | CDS | 51798507 | 51798820 | 51798507 | ID=cds.MS.gene83643.t1;Parent=MS.gene83643.t1 |
chr6.3 | exon | 51794610 | 51795042 | 51794610 | ID=MS.gene83643.t1.exon2;Parent=MS.gene83643.t1 |
chr6.3 | CDS | 51794610 | 51795042 | 51794610 | ID=cds.MS.gene83643.t1;Parent=MS.gene83643.t1 |
Gene Sequence |
Protein sequence |