AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83793

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83793.t1 MTR_3g026290 80.296 406 34 3 1 406 1 360 1.33e-178 501
MS.gene83793.t1 MTR_3g026330 76.601 406 33 4 1 406 1 344 5.98e-164 464
MS.gene83793.t1 MTR_3g026230 70.111 271 53 7 1 268 1 246 4.19e-86 262
MS.gene83793.t1 MTR_3g026230 61.538 260 63 6 149 406 28 252 6.75e-62 200
MS.gene83793.t1 MTR_3g026160 60.811 222 41 7 1 221 1 177 3.57e-55 181
MS.gene83793.t1 MTR_3g026160 69.128 149 32 3 199 344 40 177 1.21e-39 140
MS.gene83793.t1 MTR_3g026160 67.066 167 24 7 106 268 39 178 7.13e-38 135
MS.gene83793.t1 MTR_3g026160 71.429 140 35 3 153 289 40 177 7.87e-37 132
MS.gene83793.t1 MTR_3g026160 61.250 160 36 4 261 406 37 184 9.39e-33 122
MS.gene83793.t1 MTR_3g026160 69.355 124 30 3 284 399 30 153 2.14e-28 110
MS.gene83793.t1 MTR_3g026240 47.222 108 44 2 1 97 1 106 1.26e-19 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83793.t1 AT5G09530 55.665 406 128 9 3 398 7 370 1.05e-87 271
MS.gene83793.t1 AT5G09530 63.497 326 89 7 80 399 39 340 2.10e-80 252
MS.gene83793.t1 AT5G09530 61.702 235 69 3 183 400 39 269 7.16e-58 194
MS.gene83793.t1 AT5G09530 66.972 109 36 0 291 399 33 141 9.50e-27 110
MS.gene83793.t1 AT5G09520 59.804 102 32 2 191 292 34 126 1.94e-19 84.3
MS.gene83793.t1 AT5G09520 55.238 105 42 1 291 395 31 130 2.10e-19 84.3
MS.gene83793.t1 AT5G09520 60.000 100 28 3 104 203 39 126 4.56e-17 77.8
MS.gene83793.t1 AT5G09520 53.922 102 42 1 272 373 34 130 4.49e-16 74.7
MS.gene83793.t1 AT5G09520 54.808 104 40 2 237 340 34 130 9.77e-16 73.9
MS.gene83793.t1 AT5G09520 41.509 159 49 6 3 157 8 126 5.44e-15 71.6
MS.gene83793.t1 AT5G09520 60.256 78 26 1 322 399 40 112 6.62e-15 71.6
MS.gene83793.t1 AT5G09520 53.774 106 40 4 169 274 34 130 6.69e-15 71.6
MS.gene83793.t1 AT5G09520 56.818 88 33 1 288 375 39 121 4.25e-14 69.3
MS.gene83793.t1 AT5G09520 47.200 125 35 2 123 247 34 127 4.97e-14 68.9
MS.gene83793.t1 AT5G09520 54.167 96 34 3 163 255 39 127 3.93e-13 66.6
MS.gene83793.t1 AT5G09520 48.696 115 41 3 215 329 34 130 3.69e-12 63.9

Find 122 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCTAGCTTAGGCGATTC+AGG 0.199188 3.2:+16570774 None:intergenic
AGTTCAGGCTTTGGCATTTC+AGG 0.201344 3.2:+16570432 None:intergenic
ATTTCTAGATTTGGCATTTC+AGG 0.202496 3.2:+16570879 None:intergenic
TGCTCTAGCTTAGGTGATTC+AGG 0.217501 3.2:+16570498 None:intergenic
CTCGGGGACTTTAGGGAGTT+TGG 0.229602 3.2:+16570113 None:intergenic
TCAGGTACTTTAGGAATTTC+AGG 0.229861 3.2:+16570450 None:intergenic
TCAGGTACTTTAGGAATTTC+AGG 0.229861 3.2:+16570588 None:intergenic
TCATGTACTTTAGGAATTTC+AGG 0.236813 3.2:+16570726 None:intergenic
TTAGGTAACTCGGGGACTTT+AGG 0.244084 3.2:+16570105 None:intergenic
TTTGGCATTTCATGTACTTT+AGG 0.253187 3.2:+16570717 None:intergenic
TAGTTCAGGCTTTGGTAATT+CGG 0.273135 3.2:+16570845 None:intergenic
AGTTCATGCTTTGGCATTTC+AGG 0.274795 3.2:+16570570 None:intergenic
TTTGGCATTTCAGGTACTTT+AGG 0.274955 3.2:+16570579 None:intergenic
TTTGGAGTTTCTGGGACTTT+AGG 0.275111 3.2:+16569973 None:intergenic
TTAGGTAACTCTGGTACTTT+AGG 0.280417 3.2:+16570039 None:intergenic
TTTGGCATTTCAGGTACTTT+AGG 0.284794 3.2:+16570441 None:intergenic
TCAGGTAACTCAGGGGCTTT+AGG 0.287190 3.2:+16570303 None:intergenic
TTAGGGAATTCAGGGGCTTT+AGG 0.292740 3.2:+16570369 None:intergenic
TTTGGTAATTCGGGCCCTTT+AGG 0.297052 3.2:+16570855 None:intergenic
ACTTTAGGGAGTTTGGGTTT+TGG 0.297248 3.2:+16570120 None:intergenic
ACATCTGACTTAGGGAATTC+AGG 0.298308 3.2:+16570360 None:intergenic
AGCTCGGGTTTCGGCAGTTC+AGG 0.300108 3.2:+16570393 None:intergenic
ACTTTAGGAATTTCAGGTTT+TGG 0.302466 3.2:+16570732 None:intergenic
TTCAGGCACATTTGGTAAAT+CGG 0.304010 3.2:+16570896 None:intergenic
TTAGGTAATTCAGGAACTTT+AGG 0.308829 3.2:+16570171 None:intergenic
ACTTTAGGTAGCTCAGGTTT+TGG 0.309843 3.2:+16569988 None:intergenic
ACATTTGGTAAATCGGGTTT+TGG 0.313066 3.2:+16570903 None:intergenic
ACATCAGGCTTTGGTAATTC+AGG 0.321267 3.2:+16570951 None:intergenic
ACTTTAGGAATTTCAGGTTT+TGG 0.325465 3.2:+16570456 None:intergenic
ACTTTAGGAATTTCAGGTTT+TGG 0.325465 3.2:+16570594 None:intergenic
CCTTTAGGAATTTCTAGATT+TGG 0.339409 3.2:+16570870 None:intergenic
ACCTGAACCAGGGCTATCTA+AGG 0.350632 3.2:-16570286 MS.gene83793:CDS
TAGGTAACTCGGGGACTTTA+GGG 0.367520 3.2:+16570106 None:intergenic
ACCTTTGGAAAATCCGGCTT+TGG 0.368373 3.2:+16570975 None:intergenic
AACTCAGGTTTAGGTAATTC+AGG 0.368433 3.2:+16570162 None:intergenic
AGTTCAGGCTTTGGTAATTC+GGG 0.369186 3.2:+16570846 None:intergenic
ATCTTAGGAACATCAGGCTT+TGG 0.370059 3.2:+16570942 None:intergenic
ACGTTAAACTTAGGTAGTTC+AGG 0.370780 3.2:+16570417 None:intergenic
TTTGGCATTTCAGGCACATT+TGG 0.373772 3.2:+16570888 None:intergenic
AACTTAGGCAGTTCATGCTT+TGG 0.374362 3.2:+16570561 None:intergenic
AACTTAGGCAGTTCATGCTT+TGG 0.374362 3.2:+16570699 None:intergenic
AACTTAGGTAGTTCAGGCTT+TGG 0.376104 3.2:+16570423 None:intergenic
TCGGGGACTTTAGGGAGTTT+GGG 0.388929 3.2:+16570114 None:intergenic
ACCTTAGGCTGCTCTAGTTT+AGG 0.391315 3.2:+16570087 None:intergenic
TCAGGTACCTTTGGAAAATC+CGG 0.391950 3.2:+16570969 None:intergenic
CAATTCAGGAACGCTAAACT+TGG 0.395082 3.2:+16570821 None:intergenic
AATCCAGGTAAAGAAGGTTT+TGG 0.398471 3.2:+16570999 None:intergenic
TTTGGTAATTCAGGTACCTT+TGG 0.398494 3.2:+16570960 None:intergenic
ACGCTAAACTTGGGTAGTTC+AGG 0.399917 3.2:+16570831 None:intergenic
AGTGATTGTCGACAAATTGA+TGG 0.403257 3.2:+16571139 None:intergenic
ACCTTAGATAGCCCTGGTTC+AGG 0.405930 3.2:+16570285 None:intergenic
GCTTTAGGAAGCTCGTGTTT+TGG 0.406146 3.2:+16570318 None:intergenic
AATAGTAACACAAGGGTTGC+CGG 0.407920 3.2:-16571083 MS.gene83793:CDS
AGAGGTGGAAAATCAAGTTT+TGG 0.411861 3.2:+16571023 None:intergenic
AACTCAGGAACATTAATCTT+AGG 0.412261 3.2:+16570927 None:intergenic
GCTTTAGGAAGCTCGGGTTT+CGG 0.416557 3.2:+16570384 None:intergenic
TTTGTCAATTCAGGAACCTT+AGG 0.417258 3.2:+16570072 None:intergenic
GTGGTGGTTGGAACGACTTT+TGG 0.422489 3.2:+16569955 None:intergenic
CTCTGGTACTTTAGGAATCT+CGG 0.423668 3.2:+16570047 None:intergenic
TTTGGAAGTTCAGGAACCTT+AGG 0.429270 3.2:+16570336 None:intergenic
ATCCTAGGCAACTCAGGTTT+AGG 0.429295 3.2:+16570153 None:intergenic
CTACCAAAACCTTCTTTACC+TGG 0.433416 3.2:-16571002 MS.gene83793:CDS
AACTTGGGTAGTTCAGGCTT+TGG 0.435785 3.2:+16570837 None:intergenic
TCAGGCACATTTGGTAAATC+GGG 0.440966 3.2:+16570897 None:intergenic
TCTGGGACTTTAGGTAGCTC+AGG 0.441189 3.2:+16569982 None:intergenic
TTTGGCAATTCAGGAACCTT+AGG 0.442441 3.2:+16570474 None:intergenic
TTTGGCAATTCAGGAACCTT+AGG 0.442441 3.2:+16570612 None:intergenic
TTTGGCAATTCAGGAACCTT+AGG 0.442441 3.2:+16570750 None:intergenic
TTCAGGGGCTTTAGGAAGCT+CGG 0.447743 3.2:+16570377 None:intergenic
CATCTGACTTAGGGAATTCA+GGG 0.453396 3.2:+16570361 None:intergenic
ACATTAATCTTAGGAACATC+AGG 0.453646 3.2:+16570936 None:intergenic
TTTGGAAATTCAGGAACCTT+AGG 0.453696 3.2:+16570006 None:intergenic
ATAGTAACACAAGGGTTGCC+GGG 0.455490 3.2:-16571082 MS.gene83793:CDS
ACCTTAGGCAATTCTAGCTT+AGG 0.455532 3.2:+16570021 None:intergenic
TTTGGCATTTCGGGAATCCT+AGG 0.456930 3.2:+16570138 None:intergenic
CTGCTCTAGTTTAGGTAACT+CGG 0.471107 3.2:+16570095 None:intergenic
GCTCTAGCTTAGGTGATTCA+AGG 0.473311 3.2:+16570637 None:intergenic
TGCTCTAGTTTAGGTAACTC+GGG 0.474750 3.2:+16570096 None:intergenic
GCTCTAGCTTAGGTGATTCA+GGG 0.478301 3.2:+16570499 None:intergenic
CAAATCTAGAAATTCCTAAA+GGG 0.482792 3.2:-16570869 MS.gene83793:CDS
ACCTTAGGAACATCTGACTT+AGG 0.486210 3.2:+16570351 None:intergenic
GCTCTAGCTTAGGCGATTCA+GGG 0.491699 3.2:+16570775 None:intergenic
CCAAATCTAGAAATTCCTAA+AGG 0.493421 3.2:-16570870 MS.gene83793:CDS
AATTCAGGAACATTAAACTT+AGG 0.497894 3.2:+16570546 None:intergenic
AATTCAGGAACATTAAACTT+AGG 0.497894 3.2:+16570684 None:intergenic
CCCTAAGTCAGATGTTCCTA+AGG 0.498430 3.2:-16570352 MS.gene83793:CDS
GCCCCTGAGTTACCTGAACC+AGG 0.500616 3.2:-16570297 MS.gene83793:CDS
TTTGGTAATCCAGGTAAAGA+AGG 0.505110 3.2:+16570993 None:intergenic
CCTTAGGAACATCTGACTTA+GGG 0.506378 3.2:+16570352 None:intergenic
TCAGGGGCTTTAGGAAGCTC+GGG 0.506602 3.2:+16570378 None:intergenic
AGTTCAGGAACGTTAAACTT+AGG 0.511063 3.2:+16570408 None:intergenic
TCAGGAACTTTAGGCAACTC+AGG 0.512033 3.2:+16570180 None:intergenic
CTCTAGAAGATTGCGTGCCC+CGG 0.517761 3.2:+16571064 None:intergenic
AGCCCTGGTTCAGGTAACTC+AGG 0.518284 3.2:+16570294 None:intergenic
AATTGTGGCTTAGGTAACTC+AGG 0.521409 3.2:+16570228 None:intergenic
TTTACCTGGATTACCAAAGC+CGG 0.524521 3.2:-16570988 MS.gene83793:CDS
ACCTTAGGCTGCTCTAGCTT+AGG 0.528580 3.2:+16570489 None:intergenic
ACCTTAGGCTGCTCTAGCTT+AGG 0.528580 3.2:+16570627 None:intergenic
CCAACTTAAGGCGTGGTGGT+TGG 0.535712 3.2:+16569943 None:intergenic
TCGGGAATCCTAGGCAACTC+AGG 0.539174 3.2:+16570147 None:intergenic
AATTCTAGCTTAGGTAACTC+TGG 0.540159 3.2:+16570030 None:intergenic
TCAGAAACCTTAGATAGCCC+TGG 0.540598 3.2:+16570279 None:intergenic
TACCTAAACCTGAGTTGCCT+AGG 0.549181 3.2:-16570155 MS.gene83793:CDS
AAATCCGGCTTTGGTAATCC+AGG 0.555429 3.2:+16570984 None:intergenic
GCCCTGGTTCAGGTAACTCA+GGG 0.558910 3.2:+16570295 None:intergenic
ACCTTAGGCTGCTCTAGCTT+AGG 0.562022 3.2:+16570765 None:intergenic
ACCTAAGCTAGAATTGCCTA+AGG 0.583284 3.2:-16570022 MS.gene83793:CDS
ACCTAAGCTAGAGCAGCCTA+AGG 0.584617 3.2:-16570490 MS.gene83793:CDS
ACCTAAGCTAGAGCAGCCTA+AGG 0.584617 3.2:-16570628 MS.gene83793:CDS
GCCTAAGCTAGAGCAGCCTA+AGG 0.592632 3.2:-16570766 MS.gene83793:CDS
AATTCAGGAACGCTAAACTT+GGG 0.618805 3.2:+16570822 None:intergenic
ACCTAAACTAGAGCAGCCTA+AGG 0.623761 3.2:-16570088 MS.gene83793:CDS
CCCCTGAGTTACCTGAACCA+GGG 0.624156 3.2:-16570296 MS.gene83793:CDS
TAGTAACACAAGGGTTGCCG+GGG 0.629976 3.2:-16571081 MS.gene83793:CDS
ATTGTGGCTTAGGTAACTCA+GGG 0.633142 3.2:+16570229 None:intergenic
TCAAGTTCCAACTTAAGGCG+TGG 0.634459 3.2:+16569936 None:intergenic
TGTCAACAAATAGTAACACA+AGG 0.643639 3.2:-16571091 MS.gene83793:CDS
AGTTCCAACTTAAGGCGTGG+TGG 0.650607 3.2:+16569939 None:intergenic
GTCAACAAATAGTAACACAA+GGG 0.665196 3.2:-16571090 MS.gene83793:CDS
ATCTGACTTAGGGAATTCAG+GGG 0.668720 3.2:+16570362 None:intergenic
GCTCTAGTTTAGGTAACTCG+GGG 0.677089 3.2:+16570097 None:intergenic
CCCTGGTTCAGGTAACTCAG+GGG 0.713469 3.2:+16570296 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AATTCAGGAACATTAAACTT+AGG + chr3.2:16570413-16570432 None:intergenic 25.0%
! CAAATCTAGAAATTCCTAAA+GGG - chr3.2:16570225-16570244 MS.gene83793:CDS 25.0%
AACTCAGGAACATTAATCTT+AGG + chr3.2:16570170-16570189 None:intergenic 30.0%
ACATTAATCTTAGGAACATC+AGG + chr3.2:16570161-16570180 None:intergenic 30.0%
CCAAATCTAGAAATTCCTAA+AGG - chr3.2:16570224-16570243 MS.gene83793:CDS 30.0%
GTCAACAAATAGTAACACAA+GGG - chr3.2:16570004-16570023 MS.gene83793:CDS 30.0%
TGTCAACAAATAGTAACACA+AGG - chr3.2:16570003-16570022 MS.gene83793:CDS 30.0%
TTAGGTAATTCAGGAACTTT+AGG + chr3.2:16570926-16570945 None:intergenic 30.0%
TTTGGCATTTCATGTACTTT+AGG + chr3.2:16570380-16570399 None:intergenic 30.0%
! ATTTCTAGATTTGGCATTTC+AGG + chr3.2:16570218-16570237 None:intergenic 30.0%
! CCTTTAGGAATTTCTAGATT+TGG + chr3.2:16570227-16570246 None:intergenic 30.0%
! TCATGTACTTTAGGAATTTC+AGG + chr3.2:16570371-16570390 None:intergenic 30.0%
! TTAGGTGATTCAAGGATTTT+AGG + chr3.2:16570452-16570471 None:intergenic 30.0%
! TTTGTCAATTCAGGAGTTTT+AGG + chr3.2:16570893-16570912 None:intergenic 30.0%
!! ATTTTAGGCAATTCAGGTTT+TGG + chr3.2:16570845-16570864 None:intergenic 30.0%
!! TTCAAGGATTTTAGGTAGTT+CGG + chr3.2:16570444-16570463 None:intergenic 30.0%
!! TTTGTCGACAATCACTTTTA+CGG - chr3.2:16569962-16569981 MS.gene83793:CDS 30.0%
!!! ACTTTAGGAATTTCAGGTTT+TGG + chr3.2:16570365-16570384 None:intergenic 30.0%
AACTCAGGTTTAGGTAATTC+AGG + chr3.2:16570935-16570954 None:intergenic 35.0%
AATTCAGGAACGCTAAACTT+GGG + chr3.2:16570275-16570294 None:intergenic 35.0%
ACGTTAAACTTAGGTAGTTC+AGG + chr3.2:16570680-16570699 None:intergenic 35.0%
AGTGATTGTCGACAAATTGA+TGG + chr3.2:16569958-16569977 None:intergenic 35.0%
AGTTCAGGAACGTTAAACTT+AGG + chr3.2:16570689-16570708 None:intergenic 35.0%
TTAGGTAACTCTGGTACTTT+AGG + chr3.2:16571058-16571077 None:intergenic 35.0%
TTCAGGCACATTTGGTAAAT+CGG + chr3.2:16570201-16570220 None:intergenic 35.0%
TTTGGAAATTCAGGAACCTT+AGG + chr3.2:16571091-16571110 None:intergenic 35.0%
TTTGTCAATTCAGGAACCTT+AGG + chr3.2:16571025-16571044 None:intergenic 35.0%
! AATCCAGGTAAAGAAGGTTT+TGG + chr3.2:16570098-16570117 None:intergenic 35.0%
! ACATTTGGTAAATCGGGTTT+TGG + chr3.2:16570194-16570213 None:intergenic 35.0%
! AGAGGTGGAAAATCAAGTTT+TGG + chr3.2:16570074-16570093 None:intergenic 35.0%
! ATCTCGGATTTTGTCAATTC+AGG + chr3.2:16571034-16571053 None:intergenic 35.0%
! TAGTTCAGGCTTTGGTAATT+CGG + chr3.2:16570252-16570271 None:intergenic 35.0%
! TCAGGTACTTTAGGAATTTC+AGG + chr3.2:16570509-16570528 None:intergenic 35.0%
! TTAGGTAACTCAGGGATTTT+AGG + chr3.2:16570860-16570879 None:intergenic 35.0%
! TTAGGTGATTCAGGGATTTT+AGG + chr3.2:16570590-16570609 None:intergenic 35.0%
! TTTGGCATTTCAGGTACTTT+AGG + chr3.2:16570518-16570537 None:intergenic 35.0%
! TTTGGTAATCCAGGTAAAGA+AGG + chr3.2:16570104-16570123 None:intergenic 35.0%
! TTTGGTAATTCAGGTACCTT+TGG + chr3.2:16570137-16570156 None:intergenic 35.0%
!! AACTCAGGTTTTGTCAATTC+AGG + chr3.2:16570902-16570921 None:intergenic 35.0%
!! AATTCTAGCTTAGGTAACTC+TGG + chr3.2:16571067-16571086 None:intergenic 35.0%
!! ATTTTAGGTAGTTCGGGTTT+TGG + chr3.2:16570437-16570456 None:intergenic 35.0%
!! TCAAGGATTTTAGGTAGTTC+GGG + chr3.2:16570443-16570462 None:intergenic 35.0%
!! TTCAGGGATTTTAGGTAGTT+CGG + chr3.2:16570582-16570601 None:intergenic 35.0%
!!! ATTTCAGGTTTTGGCAATTC+AGG + chr3.2:16570356-16570375 None:intergenic 35.0%
AACTTAGGCAGTTCATGCTT+TGG + chr3.2:16570398-16570417 None:intergenic 40.0%
AACTTAGGTAGTTCAGGCTT+TGG + chr3.2:16570674-16570693 None:intergenic 40.0%
AATAGTAACACAAGGGTTGC+CGG - chr3.2:16570011-16570030 MS.gene83793:CDS 40.0%
AATTGTGGCTTAGGTAACTC+AGG + chr3.2:16570869-16570888 None:intergenic 40.0%
ACATCTGACTTAGGGAATTC+AGG + chr3.2:16570737-16570756 None:intergenic 40.0%
ACCTAAGCTAGAATTGCCTA+AGG - chr3.2:16571072-16571091 MS.gene83793:CDS 40.0%
ACCTTAGGAACATCTGACTT+AGG + chr3.2:16570746-16570765 None:intergenic 40.0%
AGTTCATGCTTTGGCATTTC+AGG + chr3.2:16570389-16570408 None:intergenic 40.0%
ATCTGACTTAGGGAATTCAG+GGG + chr3.2:16570735-16570754 None:intergenic 40.0%
ATCTTAGGAACATCAGGCTT+TGG + chr3.2:16570155-16570174 None:intergenic 40.0%
ATTGTGGCTTAGGTAACTCA+GGG + chr3.2:16570868-16570887 None:intergenic 40.0%
CAATTCAGGAACGCTAAACT+TGG + chr3.2:16570276-16570295 None:intergenic 40.0%
CATCTGACTTAGGGAATTCA+GGG + chr3.2:16570736-16570755 None:intergenic 40.0%
CCTTAGGAACATCTGACTTA+GGG + chr3.2:16570745-16570764 None:intergenic 40.0%
CTACCAAAACCTTCTTTACC+TGG - chr3.2:16570092-16570111 MS.gene83793:CDS 40.0%
TCAGGCACATTTGGTAAATC+GGG + chr3.2:16570200-16570219 None:intergenic 40.0%
TTTACCTGGATTACCAAAGC+CGG - chr3.2:16570106-16570125 MS.gene83793:CDS 40.0%
TTTGGAAGTTCAGGAACCTT+AGG + chr3.2:16570761-16570780 None:intergenic 40.0%
TTTGGCAATTCAGGAACCTT+AGG + chr3.2:16570347-16570366 None:intergenic 40.0%
TTTGGCATTTCAGGCACATT+TGG + chr3.2:16570209-16570228 None:intergenic 40.0%
! ACATCAGGCTTTGGTAATTC+AGG + chr3.2:16570146-16570165 None:intergenic 40.0%
! ACTTTAGGTAGCTCAGGTTT+TGG + chr3.2:16571109-16571128 None:intergenic 40.0%
! AGTTCAGGCTTTGGTAATTC+GGG + chr3.2:16570251-16570270 None:intergenic 40.0%
! CTCTGGTACTTTAGGAATCT+CGG + chr3.2:16571050-16571069 None:intergenic 40.0%
! CTGCTCTAGTTTAGGTAACT+CGG + chr3.2:16571002-16571021 None:intergenic 40.0%
! TCAGGGATTTTAGGCAATTC+AGG + chr3.2:16570851-16570870 None:intergenic 40.0%
! TCAGGTACCTTTGGAAAATC+CGG + chr3.2:16570128-16570147 None:intergenic 40.0%
! TGCTCTAGTTTAGGTAACTC+GGG + chr3.2:16571001-16571020 None:intergenic 40.0%
! TTAGGCGATTCAGGGATTTT+AGG + chr3.2:16570314-16570333 None:intergenic 40.0%
!! AAAGAAGGTTTTGGTAGAGG+TGG + chr3.2:16570089-16570108 None:intergenic 40.0%
!! ACCTTAGGCAATTCTAGCTT+AGG + chr3.2:16571076-16571095 None:intergenic 40.0%
!! ACTTTAGGGAGTTTGGGTTT+TGG + chr3.2:16570977-16570996 None:intergenic 40.0%
!! AGTTTGGGTTTTGGCATTTC+GGG + chr3.2:16570968-16570987 None:intergenic 40.0%
!! ATTTTAGGTAGCTCGGGTTT+TGG + chr3.2:16570299-16570318 None:intergenic 40.0%
!! GAGTTTGGGTTTTGGCATTT+CGG + chr3.2:16570969-16570988 None:intergenic 40.0%
!! GGTAAAGAAGGTTTTGGTAG+AGG + chr3.2:16570092-16570111 None:intergenic 40.0%
!! GGTGGAAAATCAAGTTTTGG+AGG + chr3.2:16570071-16570090 None:intergenic 40.0%
!! GTTTTAGGCAATTGTGGCTT+AGG + chr3.2:16570878-16570897 None:intergenic 40.0%
!! TCAGGGATTTTAGGTAGTTC+GGG + chr3.2:16570581-16570600 None:intergenic 40.0%
!! TTCAGGGATTTTAGGTAGCT+CGG + chr3.2:16570306-16570325 None:intergenic 40.0%
!! TTTGGAGTTTCTGGGACTTT+AGG + chr3.2:16571124-16571143 None:intergenic 40.0%
!!! AAATCAAGTTTTGGAGGCTG+AGG + chr3.2:16570065-16570084 None:intergenic 40.0%
!!! AGCTCAGGTTTTGGAAATTC+AGG + chr3.2:16571100-16571119 None:intergenic 40.0%
!!! GAACGACTTTTGGAGTTTCT+GGG + chr3.2:16571132-16571151 None:intergenic 40.0%
!!! TCAGGAGTTTTAGGCAATTG+TGG + chr3.2:16570884-16570903 None:intergenic 40.0%
AACTTGGGTAGTTCAGGCTT+TGG + chr3.2:16570260-16570279 None:intergenic 45.0%
ACCTAAACTAGAGCAGCCTA+AGG - chr3.2:16571006-16571025 MS.gene83793:CDS 45.0%
ACGCTAAACTTGGGTAGTTC+AGG + chr3.2:16570266-16570285 None:intergenic 45.0%
ATAGTAACACAAGGGTTGCC+GGG - chr3.2:16570012-16570031 MS.gene83793:CDS 45.0%
ATCCTAGGCAACTCAGGTTT+AGG + chr3.2:16570944-16570963 None:intergenic 45.0%
CCCTAAGTCAGATGTTCCTA+AGG - chr3.2:16570742-16570761 MS.gene83793:CDS 45.0%
TACCTAAACCTGAGTTGCCT+AGG - chr3.2:16570939-16570958 MS.gene83793:CDS 45.0%
TAGGTAACTCGGGGACTTTA+GGG + chr3.2:16570991-16571010 None:intergenic 45.0%
TCAGAAACCTTAGATAGCCC+TGG + chr3.2:16570818-16570837 None:intergenic 45.0%
TCAGGAACTTTAGGCAACTC+AGG + chr3.2:16570917-16570936 None:intergenic 45.0%
TTAGGGAATTCAGGGGCTTT+AGG + chr3.2:16570728-16570747 None:intergenic 45.0%
TTAGGTAACTCGGGGACTTT+AGG + chr3.2:16570992-16571011 None:intergenic 45.0%
TTTGGCATTTCGGGAATCCT+AGG + chr3.2:16570959-16570978 None:intergenic 45.0%
! AAATCCGGCTTTGGTAATCC+AGG + chr3.2:16570113-16570132 None:intergenic 45.0%
! ACCAAAGCCGGATTTTCCAA+AGG - chr3.2:16570118-16570137 MS.gene83793:CDS 45.0%
! ACCTTAGGCTGCTCTAGTTT+AGG + chr3.2:16571010-16571029 None:intergenic 45.0%
! ACCTTTGGAAAATCCGGCTT+TGG + chr3.2:16570122-16570141 None:intergenic 45.0%
! AGTTCAGGCTTTGGCATTTC+AGG + chr3.2:16570665-16570684 None:intergenic 45.0%
! GCTCTAGCTTAGGTGATTCA+AGG + chr3.2:16570460-16570479 None:intergenic 45.0%
! GCTCTAGCTTAGGTGATTCA+GGG + chr3.2:16570460-16570479 None:intergenic 45.0%
! GCTCTAGTTTAGGTAACTCG+GGG + chr3.2:16571000-16571019 None:intergenic 45.0%
! TGCTCTAGCTTAGGTGATTC+AGG + chr3.2:16570461-16570480 None:intergenic 45.0%
! TTTGGTAATTCGGGCCCTTT+AGG + chr3.2:16570242-16570261 None:intergenic 45.0%
!! AAATCGGGTTTTGGCAACTC+AGG + chr3.2:16570185-16570204 None:intergenic 45.0%
!! AGTTCGGGTTTTGGCAATTC+AGG + chr3.2:16570428-16570447 None:intergenic 45.0%
!! TCAGGGATTTTAGGTAGCTC+GGG + chr3.2:16570305-16570324 None:intergenic 45.0%
!!! AGCTCGTGTTTTGGAAGTTC+AGG + chr3.2:16570770-16570789 None:intergenic 45.0%
!!! GCTTTAGGAAGCTCGTGTTT+TGG + chr3.2:16570779-16570798 None:intergenic 45.0%
!!! GGAACGACTTTTGGAGTTTC+TGG + chr3.2:16571133-16571152 None:intergenic 45.0%
ACCTAAGCTAGAGCAGCCTA+AGG - chr3.2:16570466-16570485 MS.gene83793:CDS 50.0%
ACCTGAACCAGGGCTATCTA+AGG - chr3.2:16570808-16570827 MS.gene83793:CDS 50.0%
ACCTTAGATAGCCCTGGTTC+AGG + chr3.2:16570812-16570831 None:intergenic 50.0%
TAGTAACACAAGGGTTGCCG+GGG - chr3.2:16570013-16570032 MS.gene83793:CDS 50.0%
TCAGGTAACTCAGGGGCTTT+AGG + chr3.2:16570794-16570813 None:intergenic 50.0%
! ACCTTAGGCTGCTCTAGCTT+AGG + chr3.2:16570332-16570351 None:intergenic 50.0%
! GCTCTAGCTTAGGCGATTCA+GGG + chr3.2:16570322-16570341 None:intergenic 50.0%
! GTGGTGGTTGGAACGACTTT+TGG + chr3.2:16571142-16571161 None:intergenic 50.0%
! TCGGGGACTTTAGGGAGTTT+GGG + chr3.2:16570983-16571002 None:intergenic 50.0%
! TCTGGGACTTTAGGTAGCTC+AGG + chr3.2:16571115-16571134 None:intergenic 50.0%
! TGCTCTAGCTTAGGCGATTC+AGG + chr3.2:16570323-16570342 None:intergenic 50.0%
!! AGCTCGGGTTTTGGCAATTC+AGG + chr3.2:16570290-16570309 None:intergenic 50.0%
!! GCTTTAGGAAGCTCGGGTTT+CGG + chr3.2:16570713-16570732 None:intergenic 50.0%
!! TTCAGGGGCTTTAGGAAGCT+CGG + chr3.2:16570720-16570739 None:intergenic 50.0%
AGCCCTGGTTCAGGTAACTC+AGG + chr3.2:16570803-16570822 None:intergenic 55.0%
CCCCTGAGTTACCTGAACCA+GGG - chr3.2:16570798-16570817 MS.gene83793:CDS 55.0%
CCCTGGTTCAGGTAACTCAG+GGG + chr3.2:16570801-16570820 None:intergenic 55.0%
GCCCTGGTTCAGGTAACTCA+GGG + chr3.2:16570802-16570821 None:intergenic 55.0%
GCCTAAGCTAGAGCAGCCTA+AGG - chr3.2:16570328-16570347 MS.gene83793:CDS 55.0%
TCGGGAATCCTAGGCAACTC+AGG + chr3.2:16570950-16570969 None:intergenic 55.0%
! CTCGGGGACTTTAGGGAGTT+TGG + chr3.2:16570984-16571003 None:intergenic 55.0%
! CTCTAGAAGATTGCGTGCCC+CGG + chr3.2:16570033-16570052 None:intergenic 55.0%
!! TCAGGGGCTTTAGGAAGCTC+GGG + chr3.2:16570719-16570738 None:intergenic 55.0%
AGCTCGGGTTTCGGCAGTTC+AGG + chr3.2:16570704-16570723 None:intergenic 60.0%
GCCCCTGAGTTACCTGAACC+AGG - chr3.2:16570797-16570816 MS.gene83793:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 16569948 16571168 16569948 ID=MS.gene83793
chr3.2 mRNA 16569948 16571168 16569948 ID=MS.gene83793.t1;Parent=MS.gene83793
chr3.2 exon 16569948 16571168 16569948 ID=MS.gene83793.t1.exon1;Parent=MS.gene83793.t1
chr3.2 CDS 16569948 16571168 16569948 ID=cds.MS.gene83793.t1;Parent=MS.gene83793.t1
Gene Sequence

>MS.gene83793

ATGGCTTCCATCAATTTGTCGACAATCACTTTTACGGTTATGTTTCTAGCTTTATTGTCAACAAATAGTAACACAAGGGTTGCCGGGGCACGCAATCTTCTAGAGTCAAACATACCTCAGCCTCCAAAACTTGATTTTCCACCTCTACCAAAACCTTCTTTACCTGGATTACCAAAGCCGGATTTTCCAAAGGTACCTGAATTACCAAAGCCTGATGTTCCTAAGATTAATGTTCCTGAGTTGCCAAAACCCGATTTACCAAATGTGCCTGAAATGCCAAATCTAGAAATTCCTAAAGGGCCCGAATTACCAAAGCCTGAACTACCCAAGTTTAGCGTTCCTGAATTGCCAAAACCCGAGCTACCTAAAATCCCTGAATCGCCTAAGCTAGAGCAGCCTAAGGTTCCTGAATTGCCAAAACCTGAAATTCCTAAAGTACATGAAATGCCAAAGCATGAACTGCCTAAGTTTAATGTTCCTGAATTGCCAAAACCCGAACTACCTAAAATCCTTGAATCACCTAAGCTAGAGCAGCCTAAGGTTCCTGAATTGCCAAAACCTGAAATTCCTAAAGTACCTGAAATGCCAAAGCATGAACTGCCTAAGTTTAATGTTCCTGAATTGCCAAAACCCGAACTACCTAAAATCCCTGAATCACCTAAGCTAGAGCAGCCTAAGGTTCCTGAATTGCCAAAACCTGAAATTCCTAAAGTACCTGAAATGCCAAAGCCTGAACTACCTAAGTTTAACGTTCCTGAACTGCCGAAACCCGAGCTTCCTAAAGCCCCTGAATTCCCTAAGTCAGATGTTCCTAAGGTTCCTGAACTTCCAAAACACGAGCTTCCTAAAGCCCCTGAGTTACCTGAACCAGGGCTATCTAAGGTTTCTGAATTGCCAAAACCTGAATTGCCTAAAATCCCTGAGTTACCTAAGCCACAATTGCCTAAAACTCCTGAATTGACAAAACCTGAGTTGCCTAAAGTTCCTGAATTACCTAAACCTGAGTTGCCTAGGATTCCCGAAATGCCAAAACCCAAACTCCCTAAAGTCCCCGAGTTACCTAAACTAGAGCAGCCTAAGGTTCCTGAATTGACAAAATCCGAGATTCCTAAAGTACCAGAGTTACCTAAGCTAGAATTGCCTAAGGTTCCTGAATTTCCAAAACCTGAGCTACCTAAAGTCCCAGAAACTCCAAAAGTCGTTCCAACCACCACGCCTTAA
Protein sequence

>MS.gene83793.t1

MASINLSTITFTVMFLALLSTNSNTRVAGARNLLESNIPQPPKLDFPPLPKPSLPGLPKPDFPKVPELPKPDVPKINVPELPKPDLPNVPEMPNLEIPKGPELPKPELPKFSVPELPKPELPKIPESPKLEQPKVPELPKPEIPKVHEMPKHELPKFNVPELPKPELPKILESPKLEQPKVPELPKPEIPKVPEMPKHELPKFNVPELPKPELPKIPESPKLEQPKVPELPKPEIPKVPEMPKPELPKFNVPELPKPELPKAPEFPKSDVPKVPELPKHELPKAPELPEPGLSKVSELPKPELPKIPELPKPQLPKTPELTKPELPKVPELPKPELPRIPEMPKPKLPKVPELPKLEQPKVPELTKSEIPKVPELPKLELPKVPEFPKPELPKVPETPKVVPTTTP