Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83845.t1 | XP_003624635.1 | 99.6 | 1118 | 5 | 0 | 1 | 1118 | 1 | 1118 | 0.00E+00 | 2155.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83845.t1 | Q8BKC5 | 36.3 | 1111 | 657 | 16 | 28 | 1118 | 17 | 1096 | 9.0e-188 | 659.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83845.t1 | A5XEM2 | 99.6 | 1118 | 5 | 0 | 1 | 1118 | 1 | 1118 | 0.0e+00 | 2155.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049209 | MS.gene83845 | 0.832599 | 8.62E-56 | -1.69E-46 |
| MS.gene059007 | MS.gene83845 | 0.821681 | 3.55E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83845.t1 | MTR_7g085820 | 99.642 | 1118 | 4 | 0 | 1 | 1118 | 1 | 1118 | 0.0 | 2290 |
| MS.gene83845.t1 | MTR_8g085950 | 79.784 | 1113 | 220 | 3 | 7 | 1118 | 9 | 1117 | 0.0 | 1759 |
| MS.gene83845.t1 | MTR_2g006750 | 25.819 | 1069 | 698 | 25 | 19 | 1065 | 2 | 997 | 5.18e-88 | 307 |
| MS.gene83845.t1 | MTR_3g064930 | 27.202 | 1022 | 651 | 36 | 19 | 1013 | 77 | 1032 | 2.44e-73 | 264 |
| MS.gene83845.t1 | MTR_3g064980 | 25.353 | 1061 | 726 | 25 | 43 | 1087 | 103 | 1113 | 4.46e-73 | 265 |
| MS.gene83845.t1 | MTR_3g064910 | 45.532 | 235 | 126 | 1 | 884 | 1118 | 529 | 761 | 8.54e-62 | 226 |
| MS.gene83845.t1 | MTR_3g064910 | 28.835 | 541 | 347 | 18 | 37 | 552 | 48 | 575 | 1.74e-46 | 180 |
| MS.gene83845.t1 | MTR_3g064940 | 24.512 | 922 | 599 | 27 | 25 | 909 | 64 | 925 | 9.54e-43 | 169 |
| MS.gene83845.t1 | MTR_3g065010 | 24.554 | 896 | 577 | 22 | 38 | 911 | 103 | 921 | 1.16e-42 | 169 |
| MS.gene83845.t1 | MTR_7g098920 | 59.677 | 124 | 16 | 3 | 893 | 1012 | 6 | 99 | 5.41e-36 | 133 |
| MS.gene83845.t1 | MTR_3g064935 | 44.898 | 98 | 53 | 1 | 990 | 1087 | 38 | 134 | 1.15e-20 | 90.1 |
| MS.gene83845.t1 | MTR_8g099855 | 37.500 | 144 | 72 | 3 | 945 | 1087 | 258 | 384 | 4.01e-20 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83845.t1 | AT5G19820 | 74.373 | 1116 | 280 | 4 | 4 | 1118 | 6 | 1116 | 0.0 | 1713 |
| MS.gene83845.t1 | AT4G27640 | 24.748 | 1091 | 745 | 22 | 22 | 1095 | 5 | 1036 | 1.73e-82 | 291 |
Find 282 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGCTCTTTCATGCTTTC+TGG | -0.040025 | 7.4:-21683838 | None:intergenic |
| GTGGACATGGTGCGTGTTTC+GGG | 0.106441 | 7.4:-21677071 | None:intergenic |
| TGTAAAGCTTCCACCAAATT+TGG | 0.127943 | 7.4:-21682805 | None:intergenic |
| TCTTCTCAGGCAGCTGTTTA+TGG | 0.130988 | 7.4:+21685119 | MS.gene83845:intron |
| TGATTATATAATTCCAAATT+TGG | 0.146239 | 7.4:+21682792 | MS.gene83845:CDS |
| CTTCATGGAAGTAAAATTTA+AGG | 0.147973 | 7.4:-21682562 | None:intergenic |
| GTGAGAGAGTTTGAGGATTA+AGG | 0.166281 | 7.4:-21677027 | None:intergenic |
| CATTTGTAATATTAGGTTTC+AGG | 0.184402 | 7.4:+21678278 | MS.gene83845:intron |
| AAATAAGGTACTAAAATATC+TGG | 0.209428 | 7.4:-21680037 | None:intergenic |
| TTATGTTGCTACAGATATTA+TGG | 0.209828 | 7.4:+21684943 | MS.gene83845:intron |
| GGTGGACATGGTGCGTGTTT+CGG | 0.228644 | 7.4:-21677072 | None:intergenic |
| TGAATTGCTGCCAACTTATT+TGG | 0.239895 | 7.4:+21678758 | MS.gene83845:CDS |
| GGGCAATTGTCCACAGATTT+GGG | 0.246478 | 7.4:+21679196 | MS.gene83845:CDS |
| ATGGTGCGTGTTTCGGGGTT+AGG | 0.249043 | 7.4:-21677065 | None:intergenic |
| TGGGCAATTGTCCACAGATT+TGG | 0.253832 | 7.4:+21679195 | MS.gene83845:CDS |
| TCTCTGATGACCTCGCTTCT+TGG | 0.257887 | 7.4:+21677273 | MS.gene83845:CDS |
| GCGCAATTGGCGCATTATAT+TGG | 0.268215 | 7.4:+21677374 | MS.gene83845:CDS |
| GGACATGAGGTTTGTGATTA+GGG | 0.272045 | 7.4:-21676937 | None:intergenic |
| AGCATCAAAGTCCTCTTCTT+TGG | 0.274091 | 7.4:-21683865 | None:intergenic |
| GAGGCGAGAGAGCGTGCTCC+TGG | 0.277486 | 7.4:+21678528 | MS.gene83845:CDS |
| TTGACTGAGGCATTGAATTC+TGG | 0.283347 | 7.4:+21678327 | MS.gene83845:CDS |
| GCAGGTGATGACAAAGAATT+TGG | 0.302259 | 7.4:+21679096 | MS.gene83845:intron |
| CTGCCTTCCTAACTTCTTCA+TGG | 0.303161 | 7.4:-21682577 | None:intergenic |
| CTAAGTTGCTTGCCTATAAA+AGG | 0.312335 | 7.4:+21686410 | MS.gene83845:CDS |
| CTCACAATCCCATCCAAATA+AGG | 0.313213 | 7.4:-21680052 | None:intergenic |
| CTTCTCAGGCAGCTGTTTAT+GGG | 0.313525 | 7.4:+21685120 | MS.gene83845:intron |
| GTTAGGAAGGCAGCAGCTTC+AGG | 0.319059 | 7.4:+21682587 | MS.gene83845:CDS |
| GCACAAATGGCTCTAATTCT+AGG | 0.322349 | 7.4:+21676891 | MS.gene83845:CDS |
| TTTACTTCCATGAAGAAGTT+AGG | 0.325716 | 7.4:+21682570 | MS.gene83845:CDS |
| TGGAAAGATATTGATTGTTA+TGG | 0.326132 | 7.4:-21686626 | None:intergenic |
| TGCTAGATTGGCGATTGCTT+GGG | 0.326637 | 7.4:+21684037 | MS.gene83845:intron |
| GAGTTTGAGGATTAAGGAAT+CGG | 0.328747 | 7.4:-21677021 | None:intergenic |
| TGGTGCGTGTTTCGGGGTTA+GGG | 0.332020 | 7.4:-21677064 | None:intergenic |
| GGTTATTTATCTCAGGTATC+AGG | 0.333202 | 7.4:+21683744 | MS.gene83845:intron |
| AGATCAGATAAAGAACTTAT+AGG | 0.333704 | 7.4:+21686603 | MS.gene83845:intron |
| GCCCACCGCACCCGAGGGTT+TGG | 0.335815 | 7.4:-21679157 | None:intergenic |
| AGATAGACTTTCAATTGCTT+TGG | 0.339365 | 7.4:+21678707 | MS.gene83845:CDS |
| CCTGTCACGGTCGGATGAAT+TGG | 0.340721 | 7.4:-21677525 | None:intergenic |
| TTGGGAACGTTGGTCGTTGA+TGG | 0.340981 | 7.4:-21676961 | None:intergenic |
| TTCCAATGATGCTAGGCTTC+AGG | 0.345498 | 7.4:+21677331 | MS.gene83845:CDS |
| CAAACTTCTTGTACTCCTTC+AGG | 0.347009 | 7.4:+21680075 | MS.gene83845:CDS |
| CAGGCAGCTGTTTATGGGGT+TGG | 0.353036 | 7.4:+21685125 | MS.gene83845:intron |
| CGGAGAGTGGATTGAGTTGA+AGG | 0.356862 | 7.4:-21677158 | None:intergenic |
| AGATTTGGGGCCAGACTTGC+AGG | 0.357142 | 7.4:+21679210 | MS.gene83845:CDS |
| GATAGACTTTCAATTGCTTT+GGG | 0.359150 | 7.4:+21678708 | MS.gene83845:CDS |
| CTCCTGAAGCCTAGCATCAT+TGG | 0.367008 | 7.4:-21677333 | None:intergenic |
| GAACTTCTCATTGAGCTTGC+TGG | 0.367665 | 7.4:+21678378 | MS.gene83845:CDS |
| AACTTCTCATTGAGCTTGCT+GGG | 0.371868 | 7.4:+21678379 | MS.gene83845:CDS |
| GATAATGCTGTTTCAGCTCT+TGG | 0.372944 | 7.4:+21685466 | MS.gene83845:CDS |
| GTTGGTGTCTGTGCCGAGTT+TGG | 0.373481 | 7.4:+21685143 | MS.gene83845:CDS |
| GTTGCTTGTGTTCGCGCAAT+TGG | 0.377292 | 7.4:+21677361 | MS.gene83845:CDS |
| TGGATTTGATTGGTTCTTGA+TGG | 0.378559 | 7.4:-21677202 | None:intergenic |
| TTCATGCTTTCTGGATGAAC+TGG | 0.379901 | 7.4:-21683829 | None:intergenic |
| TTTGCTGAAGACAACAGTTC+TGG | 0.380717 | 7.4:-21682709 | None:intergenic |
| CGGGGTTAGGGGAAGTGTGG+AGG | 0.380917 | 7.4:-21677052 | None:intergenic |
| CGATCAAAACCAGGCACAAA+TGG | 0.382121 | 7.4:+21676878 | MS.gene83845:CDS |
| TTATGCTATCACGGTGGAAC+TGG | 0.382701 | 7.4:-21685498 | None:intergenic |
| GGAGGAGGTGAGAGAGTTTG+AGG | 0.383052 | 7.4:-21677034 | None:intergenic |
| TGGACATGAGGTTTGTGATT+AGG | 0.384621 | 7.4:-21676938 | None:intergenic |
| TGGGCGGCTATAAATGCAAT+TGG | 0.394396 | 7.4:+21679175 | MS.gene83845:CDS |
| ATATCACCACTTAGTGCTTC+CGG | 0.396365 | 7.4:+21679237 | MS.gene83845:CDS |
| CTGTTGGAAAAGAGAAGTTC+AGG | 0.396414 | 7.4:+21680841 | MS.gene83845:CDS |
| ATTATGTGCGGGGACTGATT+TGG | 0.397041 | 7.4:+21686780 | MS.gene83845:CDS |
| TGATATTTATCCTGCAAGTC+TGG | 0.398002 | 7.4:-21679220 | None:intergenic |
| GAAGCTATGCGACACCGTTT+CGG | 0.399962 | 7.4:+21677232 | MS.gene83845:CDS |
| AGCAATGGAGTGTATTAGTT+TGG | 0.400859 | 7.4:+21680809 | MS.gene83845:CDS |
| TCCAAAACAATTAGGATGAT+AGG | 0.406142 | 7.4:-21686930 | None:intergenic |
| GTCACTGCAACAATCTCAAC+TGG | 0.407046 | 7.4:+21681052 | MS.gene83845:CDS |
| GAGTAGACAATTGAGGAAGT+AGG | 0.408750 | 7.4:-21677403 | None:intergenic |
| ACTGTTGTCTTCAGCAAAAT+CGG | 0.411583 | 7.4:+21682714 | MS.gene83845:CDS |
| GCATGACCTTCTTTGTTCAA+TGG | 0.413646 | 7.4:+21686457 | MS.gene83845:CDS |
| AGTAGACAATTGAGGAAGTA+GGG | 0.415176 | 7.4:-21677402 | None:intergenic |
| GTGTATTAGTTTGGTAGGTA+TGG | 0.417445 | 7.4:+21680818 | MS.gene83845:CDS |
| CTAGGCTTTGCAAGTGCCTC+GGG | 0.424997 | 7.4:+21681243 | MS.gene83845:CDS |
| GAGACTAGTAACTACGGATT+TGG | 0.426002 | 7.4:+21678672 | MS.gene83845:CDS |
| CGCACCCGAGGGTTTGGATC+AGG | 0.426653 | 7.4:-21679151 | None:intergenic |
| GGTTGCAGGTTGTTCCAGCC+TGG | 0.427510 | 7.4:+21686387 | MS.gene83845:intron |
| TATGTCATCAGGCGTGGGCT+AGG | 0.428774 | 7.4:+21681225 | MS.gene83845:intron |
| GGTTAGGGGAAGTGTGGAGG+AGG | 0.428933 | 7.4:-21677049 | None:intergenic |
| GAAATTTGTGCAAGCATGTT+GGG | 0.429694 | 7.4:+21682927 | MS.gene83845:CDS |
| TTTGGAGCATGTATTATCAA+TGG | 0.431536 | 7.4:+21679114 | MS.gene83845:CDS |
| TTAGTGCTTCCGGCATTAGC+TGG | 0.434177 | 7.4:+21679247 | MS.gene83845:CDS |
| GCTAGGCTTTGCAAGTGCCT+CGG | 0.435027 | 7.4:+21681242 | MS.gene83845:CDS |
| TTCTTAACGATGGATTTGAT+TGG | 0.437781 | 7.4:-21677212 | None:intergenic |
| ATCCAAACCCTCGGGTGCGG+TGG | 0.438594 | 7.4:+21679155 | MS.gene83845:CDS |
| TAGTGCTGCTACTTCCTCTT+CGG | 0.440238 | 7.4:+21677451 | MS.gene83845:CDS |
| GTTCAGGGACGATGCCAAAC+AGG | 0.443445 | 7.4:+21680857 | MS.gene83845:CDS |
| AAAAGAAGCGGAAGCAAGTC+AGG | 0.444656 | 7.4:-21677296 | None:intergenic |
| ACTAATACACTCCATTGCTT+TGG | 0.446076 | 7.4:-21680805 | None:intergenic |
| CTCACCGCAGCATGCCAAGC+AGG | 0.448315 | 7.4:-21678630 | None:intergenic |
| AGAAGAAGGGACTCGCCATT+TGG | 0.448470 | 7.4:+21678479 | MS.gene83845:CDS |
| GGCATGACAAAACCCATGTA+TGG | 0.449433 | 7.4:-21681278 | None:intergenic |
| CTTATTTGGCTGCCCCTGAA+TGG | 0.450857 | 7.4:+21678772 | MS.gene83845:CDS |
| AGTTTGAGGATTAAGGAATC+GGG | 0.451683 | 7.4:-21677020 | None:intergenic |
| TGTGCTAATGAATTTGTTGT+TGG | 0.452880 | 7.4:+21678593 | MS.gene83845:CDS |
| TATAGGCAAGCAACTTAGCC+AGG | 0.454237 | 7.4:-21686405 | None:intergenic |
| GAGAAGAAGAGAACGGAGAG+TGG | 0.454619 | 7.4:-21677171 | None:intergenic |
| CTTGCACAAATTTCTACCTC+TGG | 0.455019 | 7.4:-21682918 | None:intergenic |
| GTGCTAGATTGGCGATTGCT+TGG | 0.457692 | 7.4:+21684036 | MS.gene83845:intron |
| ATCTAGATGAAAAGCAAGTA+AGG | 0.458320 | 7.4:+21683772 | MS.gene83845:CDS |
| CCAATTCATCCGACCGTGAC+AGG | 0.458336 | 7.4:+21677525 | MS.gene83845:CDS |
| CAGTTTGTAAAGAAGTTGTT+TGG | 0.458846 | 7.4:+21678570 | MS.gene83845:CDS |
| GAATTTGTTGTTGGATATTG+AGG | 0.461520 | 7.4:+21678602 | MS.gene83845:CDS |
| CAGGCTTAAGTTGTGCAGAC+TGG | 0.467586 | 7.4:-21681310 | None:intergenic |
| AATAAGGTACTAAAATATCT+GGG | 0.467659 | 7.4:-21680036 | None:intergenic |
| TTTCAACCATTGAACAAAGA+AGG | 0.467766 | 7.4:-21686463 | None:intergenic |
| ATTATCAGAATGCTGTGCAT+TGG | 0.469285 | 7.4:-21685431 | None:intergenic |
| TGGATTGAGTTGAAGGGGAG+AGG | 0.469956 | 7.4:-21677151 | None:intergenic |
| GGCAAGCAACTTAGCCAGGC+TGG | 0.471152 | 7.4:-21686401 | None:intergenic |
| GACTTTCAATTGCTTTGGGC+GGG | 0.473563 | 7.4:+21678712 | MS.gene83845:CDS |
| TTGCAAGCTTCAAGCAAGAA+TGG | 0.473957 | 7.4:-21684976 | None:intergenic |
| GGCAGCAATTCAGACGCAAC+TGG | 0.474296 | 7.4:-21678747 | None:intergenic |
| GCAGGACTTCCTCCCATACA+TGG | 0.476423 | 7.4:+21681265 | MS.gene83845:CDS |
| TGGAAAGCAGATGGTTCAAG+AGG | 0.476999 | 7.4:+21680531 | MS.gene83845:CDS |
| CTTCTACAGAGGCACTTTCA+AGG | 0.478037 | 7.4:+21685386 | MS.gene83845:intron |
| CAGGTTGAAGCTAGGGTAGA+AGG | 0.478075 | 7.4:-21686865 | None:intergenic |
| ACTCTCGGGGATAAAAGAAT+AGG | 0.482856 | 7.4:+21682336 | MS.gene83845:CDS |
| AATGTCATCAAATATACAAA+TGG | 0.487724 | 7.4:-21684761 | None:intergenic |
| CTTACTTATGAGCTGCTTCG+CGG | 0.490569 | 7.4:-21684795 | None:intergenic |
| GACGAAAGCTCTTCAAAGAA+AGG | 0.491643 | 7.4:-21684094 | None:intergenic |
| GAATTAGAGCCATTTGTGCC+TGG | 0.493360 | 7.4:-21676887 | None:intergenic |
| GATTCGAAGTGGGTTGAATC+CGG | 0.493509 | 7.4:-21676915 | None:intergenic |
| GGTGCGTGTTTCGGGGTTAG+GGG | 0.494918 | 7.4:-21677063 | None:intergenic |
| TTATCAGAATGCTGTGCATT+GGG | 0.497165 | 7.4:-21685430 | None:intergenic |
| AGAAATTTGTGCAAGCATGT+TGG | 0.498176 | 7.4:+21682926 | MS.gene83845:CDS |
| CATATAGGTTGCTTCCACAT+TGG | 0.499173 | 7.4:+21682532 | MS.gene83845:intron |
| AGGTGATTTAATCGAGGCTA+AGG | 0.501348 | 7.4:+21686430 | MS.gene83845:CDS |
| AGGCAAATTGTTGACATTGT+TGG | 0.502918 | 7.4:+21678423 | MS.gene83845:CDS |
| GACCAGTGTCTTGGAGGAGA+AGG | 0.504137 | 7.4:+21682365 | MS.gene83845:CDS |
| TTGCTACGCTGATGAGTTGA+AGG | 0.504595 | 7.4:+21682410 | MS.gene83845:CDS |
| GAGGATTAAGGAATCGGGAT+AGG | 0.504738 | 7.4:-21677015 | None:intergenic |
| AGGCATTAAGACCAGTGTCT+TGG | 0.504923 | 7.4:+21682356 | MS.gene83845:CDS |
| CGCACTGAATGAATGCATAC+AGG | 0.505412 | 7.4:+21682950 | MS.gene83845:CDS |
| TGTGATTAGGGATTCGAAGT+GGG | 0.507731 | 7.4:-21676925 | None:intergenic |
| AGCATTGAAACCATTACTCT+CGG | 0.515898 | 7.4:+21682321 | MS.gene83845:intron |
| ACGATGACCAGGTTGAAGCT+AGG | 0.518865 | 7.4:-21686873 | None:intergenic |
| CATTAAGACCAGTGTCTTGG+AGG | 0.520829 | 7.4:+21682359 | MS.gene83845:CDS |
| AAACCCTCGGGTGCGGTGGG+CGG | 0.521210 | 7.4:+21679159 | MS.gene83845:CDS |
| AGCAAAATCGGCTATAGAGA+AGG | 0.523446 | 7.4:+21682726 | MS.gene83845:CDS |
| CAACAAACTCAATAGCCAAA+TGG | 0.523533 | 7.4:-21678494 | None:intergenic |
| GGAGAGTGGATTGAGTTGAA+GGG | 0.524186 | 7.4:-21677157 | None:intergenic |
| ATGGAGTGTATTAGTTTGGT+AGG | 0.525634 | 7.4:+21680813 | MS.gene83845:CDS |
| AATTGCAGAGGGTTGTTCAA+AGG | 0.526620 | 7.4:+21678830 | MS.gene83845:CDS |
| TCCAAACCCTCGGGTGCGGT+GGG | 0.527222 | 7.4:+21679156 | MS.gene83845:CDS |
| CAGTCAATGTCTGCATCATG+AGG | 0.527836 | 7.4:-21678311 | None:intergenic |
| TTCTTTGTTCAATGGTTGAA+AGG | 0.529928 | 7.4:+21686465 | MS.gene83845:CDS |
| TTCTCAGGCAGCTGTTTATG+GGG | 0.531178 | 7.4:+21685121 | MS.gene83845:intron |
| AGGCGAGAGAGCGTGCTCCT+GGG | 0.532344 | 7.4:+21678529 | MS.gene83845:CDS |
| GCATTGAAACCATTACTCTC+GGG | 0.533758 | 7.4:+21682322 | MS.gene83845:intron |
| GGGTTACTTCCAATGATGCT+AGG | 0.533828 | 7.4:+21677324 | MS.gene83845:CDS |
| GCTTTGCAAGTGCCTCGGGC+AGG | 0.534139 | 7.4:+21681247 | MS.gene83845:CDS |
| TGGTCAAGAGGCAACTGCAC+AGG | 0.535935 | 7.4:+21678347 | MS.gene83845:CDS |
| GAGGCTGAGTCATTAGAAGA+AGG | 0.539348 | 7.4:+21678465 | MS.gene83845:CDS |
| TCCGGCATTAGCTGGAGCCA+TGG | 0.539722 | 7.4:+21679255 | MS.gene83845:CDS |
| AGCAGAGAGAGCCAAAGAAG+AGG | 0.540126 | 7.4:+21683854 | MS.gene83845:CDS |
| GCGTGAGATGACGACGGAGG+AGG | 0.540424 | 7.4:-21677097 | None:intergenic |
| GAGAGTGGATTGAGTTGAAG+GGG | 0.541926 | 7.4:-21677156 | None:intergenic |
| CATTTCCTGATCCAAACCCT+CGG | 0.542062 | 7.4:+21679146 | MS.gene83845:CDS |
| TAGTAACTACGGATTTGGTC+AGG | 0.542717 | 7.4:+21678677 | MS.gene83845:CDS |
| GCAAAATCGGCTATAGAGAA+GGG | 0.543836 | 7.4:+21682727 | MS.gene83845:CDS |
| GAAAACAGATCCACCAAACT+CGG | 0.543899 | 7.4:-21685156 | None:intergenic |
| ATTTCCTGATCCAAACCCTC+GGG | 0.544085 | 7.4:+21679147 | MS.gene83845:CDS |
| TTGAGGGTGCAACGATGACC+AGG | 0.544184 | 7.4:-21686884 | None:intergenic |
| CGATGACCAGGTTGAAGCTA+GGG | 0.546350 | 7.4:-21686872 | None:intergenic |
| GGTGTCTGTGCCGAGTTTGG+TGG | 0.546933 | 7.4:+21685146 | MS.gene83845:CDS |
| CTGATCCAAACCCTCGGGTG+CGG | 0.549434 | 7.4:+21679152 | MS.gene83845:CDS |
| AATGGCTCTAATTCTAGGAC+CGG | 0.549460 | 7.4:+21676896 | MS.gene83845:CDS |
| AGTTTGGTAGGTATGGCTGT+TGG | 0.550737 | 7.4:+21680825 | MS.gene83845:CDS |
| ATTGCTGGTTATACCTGTCA+CGG | 0.550941 | 7.4:-21677538 | None:intergenic |
| ACAGCATTCTGATAATGTAA+TGG | 0.552103 | 7.4:+21685438 | MS.gene83845:CDS |
| GGGCGGCTATAAATGCAATT+GGG | 0.552920 | 7.4:+21679176 | MS.gene83845:CDS |
| TCAGGGGCAGCCAAATAAGT+TGG | 0.553225 | 7.4:-21678768 | None:intergenic |
| GGCAATTCTCCTTTCCTCTG+AGG | 0.555040 | 7.4:-21684740 | None:intergenic |
| CTGAGCCACGTTTCCTGCGG+AGG | 0.555443 | 7.4:+21678403 | MS.gene83845:CDS |
| TTGGCATGCTGCGGTGAGCG+AGG | 0.555498 | 7.4:+21678635 | MS.gene83845:CDS |
| TGTCAACAATTTGCCTCCGC+AGG | 0.556267 | 7.4:-21678416 | None:intergenic |
| GAATGAAGAGTAGACAATTG+AGG | 0.556981 | 7.4:-21677410 | None:intergenic |
| GCTGATGTAATTGACACGTC+AGG | 0.557042 | 7.4:-21681329 | None:intergenic |
| AACAACTTCTTTACAAACTG+CGG | 0.559246 | 7.4:-21678567 | None:intergenic |
| TTATATAATTCCAAATTTGG+TGG | 0.559998 | 7.4:+21682795 | MS.gene83845:CDS |
| ATCAGTCGCTGATTCTTCAC+AGG | 0.561950 | 7.4:+21680573 | MS.gene83845:CDS |
| TCCATGGCTCCAGCTAATGC+CGG | 0.563505 | 7.4:-21679256 | None:intergenic |
| TGAGTGTTCAGATGTTCGAC+AGG | 0.565579 | 7.4:+21685002 | MS.gene83845:CDS |
| CTTCCATGAAGAAGTTAGGA+AGG | 0.568668 | 7.4:+21682574 | MS.gene83845:CDS |
| TTTCGGGGTTAGGGGAAGTG+TGG | 0.570235 | 7.4:-21677055 | None:intergenic |
| ATGATGTAGATATTATGTGC+GGG | 0.570591 | 7.4:+21686769 | MS.gene83845:intron |
| GAAAGGGAACTTACAAACAT+AGG | 0.571714 | 7.4:-21684127 | None:intergenic |
| TGAGTTGAAGGGGAGAGGTG+TGG | 0.572248 | 7.4:-21677146 | None:intergenic |
| TGGAAGTAAAATTTAAGGAG+AGG | 0.574089 | 7.4:-21682557 | None:intergenic |
| ATAGCCGCCCACCGCACCCG+AGG | 0.574957 | 7.4:-21679163 | None:intergenic |
| AGCGTGCTCCTGGGATGATG+AGG | 0.575247 | 7.4:+21678538 | MS.gene83845:CDS |
| GCTAGATTGGCGATTGCTTG+GGG | 0.575752 | 7.4:+21684038 | MS.gene83845:intron |
| AGCAGAAGCGAGTTCCGAAA+CGG | 0.576464 | 7.4:-21677246 | None:intergenic |
| CAAGTCTGGCCCCAAATCTG+TGG | 0.576849 | 7.4:-21679206 | None:intergenic |
| GAAGTGCAAGTTGTTGTTGA+GGG | 0.578046 | 7.4:-21686900 | None:intergenic |
| ACCTGTCTTCCAGGAGCCAG+AGG | 0.578090 | 7.4:+21682902 | MS.gene83845:intron |
| GGCATTGAATTCTGGTCAAG+AGG | 0.578146 | 7.4:+21678335 | MS.gene83845:CDS |
| TTCTTCTAATGACTCAGCCT+CGG | 0.578657 | 7.4:-21678463 | None:intergenic |
| AGCCTCGGCAATCTGCAGCA+TGG | 0.581379 | 7.4:-21678448 | None:intergenic |
| CTTCTACCCTAGCTTCAACC+TGG | 0.583452 | 7.4:+21686866 | MS.gene83845:CDS |
| GAAATTGATACTTGCAGCAA+GGG | 0.585035 | 7.4:-21677489 | None:intergenic |
| TATGCTTCGTGCCAAAGCAA+TGG | 0.585169 | 7.4:+21680794 | MS.gene83845:CDS |
| ATGCCAACCTGGTCAATCCA+AGG | 0.585232 | 7.4:-21682444 | None:intergenic |
| GTCGCATAGCTTCTTAACGA+TGG | 0.586119 | 7.4:-21677222 | None:intergenic |
| GGCAATTGTCCACAGATTTG+GGG | 0.586673 | 7.4:+21679197 | MS.gene83845:CDS |
| TAGCCGCCCACCGCACCCGA+GGG | 0.589983 | 7.4:-21679162 | None:intergenic |
| AGACTTTCAATTGCTTTGGG+CGG | 0.591625 | 7.4:+21678711 | MS.gene83845:CDS |
| AGGCTGAGTCATTAGAAGAA+GGG | 0.592282 | 7.4:+21678466 | MS.gene83845:CDS |
| TACGCTGATGAGTTGAAGGA+AGG | 0.594226 | 7.4:+21682414 | MS.gene83845:CDS |
| GCATGACAAAACCCATGTAT+GGG | 0.594926 | 7.4:-21681277 | None:intergenic |
| TGATAGCATAAATGCAGCAC+AGG | 0.595998 | 7.4:+21685510 | MS.gene83845:CDS |
| GCACTTGCACAAATTGCAGA+GGG | 0.597196 | 7.4:+21678819 | MS.gene83845:CDS |
| AGCCTTCTCCTCCAAGACAC+TGG | 0.597210 | 7.4:-21682367 | None:intergenic |
| GAGTAACTGACCTCCAACAA+GGG | 0.597739 | 7.4:-21685183 | None:intergenic |
| TGCACTTGCACAAATTGCAG+AGG | 0.597774 | 7.4:+21678818 | MS.gene83845:CDS |
| CAGGACTTCCTCCCATACAT+GGG | 0.597797 | 7.4:+21681266 | MS.gene83845:CDS |
| AGTCAATGTCTGCATCATGA+GGG | 0.598271 | 7.4:-21678310 | None:intergenic |
| AAGACAAAACCTCAGAGGAA+AGG | 0.598498 | 7.4:+21684731 | MS.gene83845:CDS |
| ACGGAGGAGGATGGTGGACA+TGG | 0.599090 | 7.4:-21677084 | None:intergenic |
| TGATCCTGCTTGGCATGCTG+CGG | 0.600005 | 7.4:+21678626 | MS.gene83845:CDS |
| GGAACGTTGGTCGTTGATGG+TGG | 0.600639 | 7.4:-21676958 | None:intergenic |
| TTGTGATTAGGGATTCGAAG+TGG | 0.600736 | 7.4:-21676926 | None:intergenic |
| TGTTGGAAAAGAGAAGTTCA+GGG | 0.601486 | 7.4:+21680842 | MS.gene83845:CDS |
| ATAGAGAAGGGGCAGTCACA+AGG | 0.604230 | 7.4:+21682739 | MS.gene83845:CDS |
| AAGTTGTGCAGACTGGAGCA+AGG | 0.604837 | 7.4:-21681303 | None:intergenic |
| AAACAATTAGGATGATAGGA+TGG | 0.605832 | 7.4:-21686926 | None:intergenic |
| TGTAACATGTAACTCGCGGT+TGG | 0.607384 | 7.4:-21681086 | None:intergenic |
| GGTAACTTCCTCATCATCCC+AGG | 0.608657 | 7.4:-21678546 | None:intergenic |
| GTGCTGCATTTATGCTATCA+CGG | 0.611301 | 7.4:-21685507 | None:intergenic |
| TGTGCAGACTGGAGCAAGGG+AGG | 0.611908 | 7.4:-21681299 | None:intergenic |
| ATTATAGAGTGGAAAGCAGA+TGG | 0.615282 | 7.4:+21680522 | MS.gene83845:intron |
| TGAAGAAAGAGAACTACTCA+AGG | 0.616789 | 7.4:+21683887 | MS.gene83845:CDS |
| TCAAGAGGCAACTGCACAGG+AGG | 0.618446 | 7.4:+21678350 | MS.gene83845:CDS |
| GGCGTTGAACGATCAAAACC+AGG | 0.620419 | 7.4:+21676869 | MS.gene83845:CDS |
| GGACTGAGCCACGTTTCCTG+CGG | 0.621090 | 7.4:+21678400 | MS.gene83845:CDS |
| ATTTGCCTCCGCAGGAAACG+TGG | 0.621262 | 7.4:-21678408 | None:intergenic |
| ATTGATACTTGCAGCAAGGG+CGG | 0.621696 | 7.4:-21677486 | None:intergenic |
| AATTTGATGAAGATGATGAC+AGG | 0.621774 | 7.4:+21681366 | MS.gene83845:CDS |
| GAGATGACGACGGAGGAGGA+TGG | 0.621924 | 7.4:-21677093 | None:intergenic |
| CGAAATTGATACTTGCAGCA+AGG | 0.622904 | 7.4:-21677490 | None:intergenic |
| TGAGTAACTGACCTCCAACA+AGG | 0.625252 | 7.4:-21685184 | None:intergenic |
| GCTGGTGAGACTAGTAACTA+CGG | 0.626383 | 7.4:+21678666 | MS.gene83845:CDS |
| GTGAGCGAGGATGATGATGC+TGG | 0.627605 | 7.4:+21678648 | MS.gene83845:CDS |
| GAGATGAGAGAAGAAGAGAA+CGG | 0.627726 | 7.4:-21677178 | None:intergenic |
| AGTTGTGCAGACTGGAGCAA+GGG | 0.630199 | 7.4:-21681302 | None:intergenic |
| GTCAATGTCTGCATCATGAG+GGG | 0.630206 | 7.4:-21678309 | None:intergenic |
| TGAAGTGCAAGTTGTTGTTG+AGG | 0.630485 | 7.4:-21686901 | None:intergenic |
| ATATTGAGGATGATCCTGCT+TGG | 0.630778 | 7.4:+21678616 | MS.gene83845:CDS |
| GGTCGTTGATGGTGGACATG+AGG | 0.631868 | 7.4:-21676950 | None:intergenic |
| ATGACGACGGAGGAGGATGG+TGG | 0.632074 | 7.4:-21677090 | None:intergenic |
| TATGATGTAGATATTATGTG+CGG | 0.632192 | 7.4:+21686768 | MS.gene83845:intron |
| GCAAGTCAGGCCAAGAAGCG+AGG | 0.632791 | 7.4:-21677283 | None:intergenic |
| CATTGAAACCATTACTCTCG+GGG | 0.635821 | 7.4:+21682323 | MS.gene83845:CDS |
| CTGGTTATACCTGTCACGGT+CGG | 0.638624 | 7.4:-21677534 | None:intergenic |
| AAAGTGCAAACCTGTACTCG+AGG | 0.643138 | 7.4:-21679292 | None:intergenic |
| TGGACATGGTGCGTGTTTCG+GGG | 0.644346 | 7.4:-21677070 | None:intergenic |
| CAAAATCGGCTATAGAGAAG+GGG | 0.649523 | 7.4:+21682728 | MS.gene83845:CDS |
| TGATGTAGATATTATGTGCG+GGG | 0.651326 | 7.4:+21686770 | MS.gene83845:intron |
| TGCCATGCTGCAGATTGCCG+AGG | 0.655913 | 7.4:+21678446 | MS.gene83845:CDS |
| TGACAAAACCCATGTATGGG+AGG | 0.656396 | 7.4:-21681274 | None:intergenic |
| ATAAGGTACTAAAATATCTG+GGG | 0.656506 | 7.4:-21680035 | None:intergenic |
| TTTGGTGGAAGCTTTACACA+AGG | 0.658617 | 7.4:+21682810 | MS.gene83845:CDS |
| TATAAAAGGTGATTTAATCG+AGG | 0.661157 | 7.4:+21686424 | MS.gene83845:CDS |
| CTAATGCCGGAAGCACTAAG+TGG | 0.661368 | 7.4:-21679243 | None:intergenic |
| AGTAACTGACCTCCAACAAG+GGG | 0.665562 | 7.4:-21685182 | None:intergenic |
| AAAGCAAGTAAGGAGCATTG+TGG | 0.670200 | 7.4:+21683782 | MS.gene83845:CDS |
| GGAAAGCAGATGGTTCAAGA+GGG | 0.674345 | 7.4:+21680532 | MS.gene83845:CDS |
| TACTTGTAACATGTAACTCG+CGG | 0.676630 | 7.4:-21681090 | None:intergenic |
| AGATGAAAGAGTCGTCGTGG+TGG | 0.677354 | 7.4:-21677121 | None:intergenic |
| GTTTGTTGTTACACTTGCTG+AGG | 0.679801 | 7.4:+21678509 | MS.gene83845:CDS |
| GGCAATACGAACATCCGAAG+AGG | 0.686647 | 7.4:-21677465 | None:intergenic |
| GGGTAAAGACAAAACCTCAG+AGG | 0.692614 | 7.4:+21684726 | MS.gene83845:intron |
| TTTAAGGAGAGGAACCAATG+TGG | 0.693314 | 7.4:-21682546 | None:intergenic |
| CAACTGAACAAACTGTGAGT+CGG | 0.697226 | 7.4:+21686803 | MS.gene83845:CDS |
| GGCGCGTGAGATGACGACGG+AGG | 0.701509 | 7.4:-21677100 | None:intergenic |
| CATGATGCAGACATTGACTG+AGG | 0.701645 | 7.4:+21678314 | MS.gene83845:CDS |
| ATGGGAGGAAGTCCTGCCCG+AGG | 0.705946 | 7.4:-21681259 | None:intergenic |
| CAAGTGCAACGAGTGCAGCA+TGG | 0.707450 | 7.4:-21678803 | None:intergenic |
| GTTGAAGCTAGGGTAGAAGG+CGG | 0.717344 | 7.4:-21686862 | None:intergenic |
| GATAGATGAAAGAGTCGTCG+TGG | 0.754182 | 7.4:-21677124 | None:intergenic |
| GGTGGCGCGTGAGATGACGA+CGG | 0.767695 | 7.4:-21677103 | None:intergenic |
| CTGCATTTATGCTATCACGG+TGG | 0.809952 | 7.4:-21685504 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 21676867 | 21686942 | 21676867 | ID=MS.gene83845 |
| chr7.4 | mRNA | 21676867 | 21686942 | 21676867 | ID=MS.gene83845.t1;Parent=MS.gene83845 |
| chr7.4 | exon | 21676867 | 21677546 | 21676867 | ID=MS.gene83845.t1.exon1;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21676867 | 21677546 | 21676867 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21678293 | 21678851 | 21678293 | ID=MS.gene83845.t1.exon2;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21678293 | 21678851 | 21678293 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21679100 | 21679303 | 21679100 | ID=MS.gene83845.t1.exon3;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21679100 | 21679303 | 21679100 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21679992 | 21680096 | 21679992 | ID=MS.gene83845.t1.exon4;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21679992 | 21680096 | 21679992 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21680529 | 21680594 | 21680529 | ID=MS.gene83845.t1.exon5;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21680529 | 21680594 | 21680529 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21680714 | 21680878 | 21680714 | ID=MS.gene83845.t1.exon6;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21680714 | 21680878 | 21680714 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21681035 | 21681109 | 21681035 | ID=MS.gene83845.t1.exon7;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21681035 | 21681109 | 21681035 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21681236 | 21681387 | 21681236 | ID=MS.gene83845.t1.exon8;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21681236 | 21681387 | 21681236 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21682323 | 21682458 | 21682323 | ID=MS.gene83845.t1.exon9;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21682323 | 21682458 | 21682323 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21682539 | 21682608 | 21682539 | ID=MS.gene83845.t1.exon10;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21682539 | 21682608 | 21682539 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21682704 | 21682831 | 21682704 | ID=MS.gene83845.t1.exon11;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21682704 | 21682831 | 21682704 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21682915 | 21682971 | 21682915 | ID=MS.gene83845.t1.exon12;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21682915 | 21682971 | 21682915 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21683759 | 21683944 | 21683759 | ID=MS.gene83845.t1.exon13;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21683759 | 21683944 | 21683759 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21684043 | 21684135 | 21684043 | ID=MS.gene83845.t1.exon14;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21684043 | 21684135 | 21684043 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21684727 | 21684812 | 21684727 | ID=MS.gene83845.t1.exon15;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21684727 | 21684812 | 21684727 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21684957 | 21685023 | 21684957 | ID=MS.gene83845.t1.exon16;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21684957 | 21685023 | 21684957 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21685128 | 21685194 | 21685128 | ID=MS.gene83845.t1.exon17;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21685128 | 21685194 | 21685128 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21685395 | 21685531 | 21685395 | ID=MS.gene83845.t1.exon18;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21685395 | 21685531 | 21685395 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21686395 | 21686486 | 21686395 | ID=MS.gene83845.t1.exon19;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21686395 | 21686486 | 21686395 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21686605 | 21686671 | 21686605 | ID=MS.gene83845.t1.exon20;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21686605 | 21686671 | 21686605 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| chr7.4 | exon | 21686778 | 21686942 | 21686778 | ID=MS.gene83845.t1.exon21;Parent=MS.gene83845.t1 |
| chr7.4 | CDS | 21686778 | 21686942 | 21686778 | ID=cds.MS.gene83845.t1;Parent=MS.gene83845.t1 |
| Gene Sequence |
| Protein sequence |
