Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83930.t1 | KEH22586.1 | 100 | 121 | 0 | 0 | 1 | 121 | 9 | 129 | 1.50E-63 | 251.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83930.t1 | Q9SFV2 | 81.8 | 121 | 22 | 0 | 1 | 121 | 200 | 320 | 2.4e-54 | 212.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83930.t1 | A0A072TZF1 | 100.0 | 121 | 0 | 0 | 1 | 121 | 9 | 129 | 1.1e-63 | 251.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051716 | MS.gene83930 | 0.870408 | 1.49E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGCTTCCCTTTGGATTC+TGG | 0.178993 | 7.3:-49876993 | None:intergenic |
| CTCTCTGACCTTTGTGGTCC+TGG | 0.263806 | 7.3:+49874977 | MS.gene83930:CDS |
| GTGTTGATGACAAAATGTTC+TGG | 0.375561 | 7.3:-49877047 | None:intergenic |
| TAATCTTCAGCTTCAACAAC+TGG | 0.425736 | 7.3:+49874919 | MS.gene83930:CDS |
| GCCATACCAAGGCTTCCCTT+TGG | 0.445854 | 7.3:-49877000 | None:intergenic |
| CTCCAGAGTGACACGGCCCT+TGG | 0.446782 | 7.3:-49877075 | None:intergenic |
| TGGATAAGTATAGCGGTGTT+TGG | 0.449914 | 7.3:+49876922 | MS.gene83930:CDS |
| ATGGCTTACTTATGCTACTA+AGG | 0.470651 | 7.3:+49877018 | MS.gene83930:CDS |
| AATGTCCTCTCTGACCTTTG+TGG | 0.471044 | 7.3:+49874971 | MS.gene83930:CDS |
| ACCTTTGTGGTCCTGGAGAG+TGG | 0.489556 | 7.3:+49874984 | MS.gene83930:CDS |
| TTTCTTACCTGCAGATAAGA+AGG | 0.494097 | 7.3:+49874862 | None:intergenic |
| CAGAATCCAAAGGGAAGCCT+TGG | 0.507519 | 7.3:+49876994 | MS.gene83930:CDS |
| TCCATAGGCATCCACTCTCC+AGG | 0.509243 | 7.3:-49874995 | None:intergenic |
| TGTTGATGACAAAATGTTCT+GGG | 0.513383 | 7.3:-49877046 | None:intergenic |
| GTCCAAGGGCCGTGTCACTC+TGG | 0.516913 | 7.3:+49877073 | MS.gene83930:CDS |
| TTTGGCACCATGGTAGAGTA+AGG | 0.524810 | 7.3:+49876940 | MS.gene83930:CDS |
| TGTCATCAACACAAGGTCCA+AGG | 0.532387 | 7.3:+49877058 | MS.gene83930:CDS |
| TCCAAAGGGAAGCCTTGGTA+TGG | 0.543849 | 7.3:+49876999 | MS.gene83930:CDS |
| TCCTGGAGAGTGGATGCCTA+TGG | 0.551597 | 7.3:+49874994 | MS.gene83930:CDS |
| GTCATCAACACAAGGTCCAA+GGG | 0.568455 | 7.3:+49877059 | MS.gene83930:CDS |
| ACAGCATGAAGTTTCTCCAT+AGG | 0.587132 | 7.3:-49875010 | None:intergenic |
| GGTCTTGTCCAGAATCCAAA+GGG | 0.593387 | 7.3:+49876985 | MS.gene83930:CDS |
| GTCAGAGAGGACATTAGCTA+CGG | 0.595279 | 7.3:-49874963 | None:intergenic |
| TATAGCGGTGTTTGGCACCA+TGG | 0.596762 | 7.3:+49876930 | MS.gene83930:CDS |
| GCTTCAACAACTGGAAGAGA+AGG | 0.599134 | 7.3:+49874928 | MS.gene83930:CDS |
| GGTATCTCACATCAGAGGAA+TGG | 0.604584 | 7.3:+49876964 | MS.gene83930:CDS |
| CCTGCAGATAAGAAGGCAGA+AGG | 0.612129 | 7.3:+49874869 | None:intergenic |
| ATCAGCATCACGATCTACAC+GGG | 0.612476 | 7.3:-49874897 | None:intergenic |
| TATCAGCATCACGATCTACA+CGG | 0.630462 | 7.3:-49874898 | None:intergenic |
| TGGTCTTGTCCAGAATCCAA+AGG | 0.639302 | 7.3:+49876984 | MS.gene83930:CDS |
| AGCATAAGTAAGCCATACCA+AGG | 0.652862 | 7.3:-49877011 | None:intergenic |
| AAGGAGGTATCTCACATCAG+AGG | 0.661349 | 7.3:+49876959 | MS.gene83930:CDS |
| GATACCTCCTTACTCTACCA+TGG | 0.665056 | 7.3:-49876947 | None:intergenic |
| TATGGAGAAACTTCATGCTG+TGG | 0.675962 | 7.3:+49875012 | MS.gene83930:CDS |
| AAACAAACTCCAGAGTGACA+CGG | 0.680205 | 7.3:-49877082 | None:intergenic |
| TCCACTCTCCAGGACCACAA+AGG | 0.684843 | 7.3:-49874985 | None:intergenic |
| GGCACCATGGTAGAGTAAGG+AGG | 0.693530 | 7.3:+49876943 | MS.gene83930:CDS |
| CAGTTGCTGGATAAGTATAG+CGG | 0.697694 | 7.3:+49876915 | MS.gene83930:intron |
| CAGGACCACAAAGGTCAGAG+AGG | 0.722830 | 7.3:-49874976 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATAAAAAGCTTAAT+AGG | + | chr7.3:49875962-49875981 | MS.gene83930:intron | 10.0% |
| !! | AACTTCAAAAATATCAATAA+TGG | + | chr7.3:49875931-49875950 | MS.gene83930:intron | 15.0% |
| !! | TTAAATGACTTGATTAATAA+GGG | + | chr7.3:49876422-49876441 | MS.gene83930:intron | 15.0% |
| !!! | AAGTTTTATCCTTAAAAAAT+AGG | - | chr7.3:49876662-49876681 | None:intergenic | 15.0% |
| !!! | ATTTTAAACTATACATCATA+TGG | - | chr7.3:49876598-49876617 | None:intergenic | 15.0% |
| !!! | ATTTTTTAAGGATAAAACTT+AGG | + | chr7.3:49876662-49876681 | MS.gene83930:intron | 15.0% |
| !! | GTTAAATGACTTGATTAATA+AGG | + | chr7.3:49876421-49876440 | MS.gene83930:intron | 20.0% |
| !! | TAAATAATGAATTCTTACGA+AGG | + | chr7.3:49875842-49875861 | MS.gene83930:intron | 20.0% |
| !! | TAAGGCTTATTTAATTAAAC+AGG | - | chr7.3:49876033-49876052 | None:intergenic | 20.0% |
| !! | TATTAGAGAAACTATTTAGA+AGG | + | chr7.3:49875387-49875406 | MS.gene83930:intron | 20.0% |
| !! | TGATATATGATAGAACATTA+TGG | + | chr7.3:49875440-49875459 | MS.gene83930:intron | 20.0% |
| !! | TTATTTAGTAGCTGATATAT+TGG | - | chr7.3:49875878-49875897 | None:intergenic | 20.0% |
| !! | TTGTGTTTGTAATTAAAAGA+TGG | + | chr7.3:49876295-49876314 | MS.gene83930:intron | 20.0% |
| !! | TTTACTTTATTATCCATACT+TGG | + | chr7.3:49876394-49876413 | MS.gene83930:intron | 20.0% |
| !!! | CATAAAATAGGCTTTTAAAT+AGG | - | chr7.3:49875739-49875758 | None:intergenic | 20.0% |
| ! | AAATGACAATATTAGAGAGT+TGG | + | chr7.3:49875267-49875286 | MS.gene83930:intron | 25.0% |
| ! | AATGACAATATTAGAGAGTT+GGG | + | chr7.3:49875268-49875287 | MS.gene83930:intron | 25.0% |
| ! | ATATAAAAAGCTTAATAGGC+CGG | + | chr7.3:49875966-49875985 | MS.gene83930:intron | 25.0% |
| ! | ATATAGGGCAAAACTTATTA+AGG | + | chr7.3:49875792-49875811 | MS.gene83930:intron | 25.0% |
| ! | CACGTTTATAAAATCACAAA+AGG | - | chr7.3:49875085-49875104 | None:intergenic | 25.0% |
| ! | CTAAATAACCAATCATATGA+AGG | + | chr7.3:49875890-49875909 | MS.gene83930:intron | 25.0% |
| ! | GGACCAATAAATAAACTAAT+TGG | + | chr7.3:49876443-49876462 | MS.gene83930:intron | 25.0% |
| ! | TATATGATAGAACATTATGG+CGG | + | chr7.3:49875443-49875462 | MS.gene83930:intron | 25.0% |
| ! | TCATTTAACTATTCCAAGTA+TGG | - | chr7.3:49876410-49876429 | None:intergenic | 25.0% |
| !! | CAGCCAATTAGTTTATTTAT+TGG | - | chr7.3:49876449-49876468 | None:intergenic | 25.0% |
| !! | CTATTGGATTCTAAAAATGT+AGG | - | chr7.3:49876171-49876190 | None:intergenic | 25.0% |
| !! | GATTAAAACATTCCCAATTT+TGG | - | chr7.3:49876237-49876256 | None:intergenic | 25.0% |
| !! | TAAAAGCCTATTTTATGCTA+AGG | + | chr7.3:49875742-49875761 | MS.gene83930:intron | 25.0% |
| !! | TAATAAGTTTTGCCCTATAT+AGG | - | chr7.3:49875792-49875811 | None:intergenic | 25.0% |
| !! | TTTGGGATTTATCCAAAATT+GGG | + | chr7.3:49876222-49876241 | MS.gene83930:intron | 25.0% |
| !!! | ATACACAGACCTATTTTTTA+AGG | + | chr7.3:49876650-49876669 | MS.gene83930:intron | 25.0% |
| !!! | ATTTTAATGTGTTCCAAACA+TGG | - | chr7.3:49876348-49876367 | None:intergenic | 25.0% |
| AACACTCAGAGATTAAACAA+AGG | - | chr7.3:49876881-49876900 | None:intergenic | 30.0% | |
| ACATTATCATAGGGTATGTT+TGG | + | chr7.3:49876472-49876491 | MS.gene83930:intron | 30.0% | |
| AGAAACTATTTAGAAGGATC+TGG | + | chr7.3:49875393-49875412 | MS.gene83930:intron | 30.0% | |
| ATGACAATATTAGAGAGTTG+GGG | + | chr7.3:49875269-49875288 | MS.gene83930:intron | 30.0% | |
| CAAACATATTTGTGTGCTTT+AGG | - | chr7.3:49875818-49875837 | None:intergenic | 30.0% | |
| GTTTCTCTAATAGTGTTTCT+AGG | - | chr7.3:49875379-49875398 | None:intergenic | 30.0% | |
| TAAGGATAAAACTTAGGTAC+AGG | + | chr7.3:49876668-49876687 | MS.gene83930:intron | 30.0% | |
| TCACTAGAATTCTACATGAA+AGG | + | chr7.3:49875557-49875576 | MS.gene83930:intron | 30.0% | |
| ! | AACATTTTGTCATCAACACA+AGG | + | chr7.3:49877051-49877070 | MS.gene83930:CDS | 30.0% |
| ! | ATGGTTAATAAGAAGTGTGA+AGG | - | chr7.3:49876752-49876771 | None:intergenic | 30.0% |
| ! | GTTGCAAAAAGTGCAAAATA+TGG | - | chr7.3:49876771-49876790 | None:intergenic | 30.0% |
| ! | TACGATTTGATTTCCATGTT+TGG | + | chr7.3:49876332-49876351 | MS.gene83930:intron | 30.0% |
| ! | TGGTTAATAAGAAGTGTGAA+GGG | - | chr7.3:49876751-49876770 | None:intergenic | 30.0% |
| !! | CTTTGGGATTTATCCAAAAT+TGG | + | chr7.3:49876221-49876240 | MS.gene83930:intron | 30.0% |
| !! | TGTTGATGACAAAATGTTCT+GGG | - | chr7.3:49877049-49877068 | None:intergenic | 30.0% |
| AAAAAGCCTATTAAGCCCAT+CGG | - | chr7.3:49875993-49876012 | None:intergenic | 35.0% | |
| AACACAAGCCTTCATATGAT+TGG | - | chr7.3:49875901-49875920 | None:intergenic | 35.0% | |
| AAGCAATATCCCACTAAATG+AGG | - | chr7.3:49875489-49875508 | None:intergenic | 35.0% | |
| AATATCCCACTAAATGAGGT+AGG | - | chr7.3:49875485-49875504 | None:intergenic | 35.0% | |
| ATGGCTTACTTATGCTACTA+AGG | + | chr7.3:49877018-49877037 | MS.gene83930:CDS | 35.0% | |
| ATGTAACCTACCTCATTTAG+TGG | + | chr7.3:49875476-49875495 | MS.gene83930:intron | 35.0% | |
| ATGTAAGCCTACTCCTATAT+AGG | + | chr7.3:49875776-49875795 | MS.gene83930:intron | 35.0% | |
| ATGTAGAGTCAAATCACTAG+AGG | + | chr7.3:49875343-49875362 | MS.gene83930:intron | 35.0% | |
| CTGAATCAACTTCTACTCTT+GGG | + | chr7.3:49876194-49876213 | MS.gene83930:intron | 35.0% | |
| TAATCTTCAGCTTCAACAAC+TGG | + | chr7.3:49874919-49874938 | MS.gene83930:CDS | 35.0% | |
| TAATTAAACAGGCCAGACTA+AGG | - | chr7.3:49876022-49876041 | None:intergenic | 35.0% | |
| TACGCTTAATTTACTCGTGT+TGG | - | chr7.3:49875191-49875210 | None:intergenic | 35.0% | |
| TAGAAAAGGTGGTAGAAACT+TGG | + | chr7.3:49875304-49875323 | MS.gene83930:intron | 35.0% | |
| TATCATAGGGTATGTTTGGA+CGG | + | chr7.3:49876476-49876495 | MS.gene83930:intron | 35.0% | |
| TCTAGTGACAGCAACTAAAA+TGG | - | chr7.3:49875545-49875564 | None:intergenic | 35.0% | |
| TGATGCATCTCACATACATT+TGG | + | chr7.3:49876623-49876642 | MS.gene83930:intron | 35.0% | |
| TGGCTGCAAACATTATCATA+GGG | + | chr7.3:49876463-49876482 | MS.gene83930:intron | 35.0% | |
| TGTAACCTACCTCATTTAGT+GGG | + | chr7.3:49875477-49875496 | MS.gene83930:intron | 35.0% | |
| TGTAAGCCTACTCCTATATA+GGG | + | chr7.3:49875777-49875796 | MS.gene83930:intron | 35.0% | |
| TTGGCTGCAAACATTATCAT+AGG | + | chr7.3:49876462-49876481 | MS.gene83930:intron | 35.0% | |
| ! | AGGCTTTTAAATAGGCTTTC+AGG | - | chr7.3:49875731-49875750 | None:intergenic | 35.0% |
| ! | GAAGTTGATTCAGGAACTAT+TGG | - | chr7.3:49876187-49876206 | None:intergenic | 35.0% |
| ! | GGAGATTAATGAGTTGGATA+GGG | + | chr7.3:49875414-49875433 | MS.gene83930:intron | 35.0% |
| ! | TCTACCACCTTTTCTACAAT+AGG | - | chr7.3:49875300-49875319 | None:intergenic | 35.0% |
| ! | TGGAGATTAATGAGTTGGAT+AGG | + | chr7.3:49875413-49875432 | MS.gene83930:intron | 35.0% |
| !! | GTGTTGATGACAAAATGTTC+TGG | - | chr7.3:49877050-49877069 | None:intergenic | 35.0% |
| !!! | TCTGAGTGTTGCTTTGTTTT+TGG | + | chr7.3:49876891-49876910 | MS.gene83930:intron | 35.0% |
| AAAAATGTAGGTGACGCCTA+GGG | - | chr7.3:49876159-49876178 | None:intergenic | 40.0% | |
| AAAAGCCTATTAAGCCCATC+GGG | - | chr7.3:49875992-49876011 | None:intergenic | 40.0% | |
| AAACAAACTCCAGAGTGACA+CGG | - | chr7.3:49877085-49877104 | None:intergenic | 40.0% | |
| AACGTGAATGAGTAGCAGAA+AGG | + | chr7.3:49875099-49875118 | MS.gene83930:intron | 40.0% | |
| ACAGCATGAAGTTTCTCCAT+AGG | - | chr7.3:49875013-49875032 | None:intergenic | 40.0% | |
| AGCACCTATTGTAGAAAAGG+TGG | + | chr7.3:49875293-49875312 | MS.gene83930:intron | 40.0% | |
| AGCATAAGTAAGCCATACCA+AGG | - | chr7.3:49877014-49877033 | None:intergenic | 40.0% | |
| AGGATGTTACGTTGGATATG+TGG | + | chr7.3:49875220-49875239 | MS.gene83930:intron | 40.0% | |
| AGTTAGGCCTTAAATAGGCT+AGG | + | chr7.3:49876096-49876115 | MS.gene83930:intron | 40.0% | |
| CACGAGTAAATTAAGCGTAG+TGG | + | chr7.3:49875192-49875211 | MS.gene83930:intron | 40.0% | |
| CAGTTGCTGGATAAGTATAG+CGG | + | chr7.3:49876915-49876934 | MS.gene83930:intron | 40.0% | |
| CCTCGAAAATGAGCATATGA+CGG | - | chr7.3:49875676-49875695 | None:intergenic | 40.0% | |
| CCTGAATCAACTTCTACTCT+TGG | + | chr7.3:49876193-49876212 | MS.gene83930:intron | 40.0% | |
| CCTTATAAAAAGCTTGAGCC+TGG | + | chr7.3:49876048-49876067 | MS.gene83930:intron | 40.0% | |
| CTCGAAAATGAGCATATGAC+GGG | - | chr7.3:49875675-49875694 | None:intergenic | 40.0% | |
| GGATCTGGAGATTAATGAGT+TGG | + | chr7.3:49875408-49875427 | MS.gene83930:intron | 40.0% | |
| GGTAGCACCTATTGTAGAAA+AGG | + | chr7.3:49875290-49875309 | MS.gene83930:intron | 40.0% | |
| GTCAGGCCTTAGCATAAAAT+AGG | - | chr7.3:49875751-49875770 | None:intergenic | 40.0% | |
| TAAAAATGTAGGTGACGCCT+AGG | - | chr7.3:49876160-49876179 | None:intergenic | 40.0% | |
| TAAGACCGGCAATGTTGTAT+GGG | + | chr7.3:49875142-49875161 | MS.gene83930:intron | 40.0% | |
| TAGAGTCAAATCACTAGAGG+CGG | + | chr7.3:49875346-49875365 | MS.gene83930:intron | 40.0% | |
| TATCAGCATCACGATCTACA+CGG | - | chr7.3:49874901-49874920 | None:intergenic | 40.0% | |
| TATGGAGAAACTTCATGCTG+TGG | + | chr7.3:49875012-49875031 | MS.gene83930:CDS | 40.0% | |
| TATGTCCCATACAACATTGC+CGG | - | chr7.3:49875150-49875169 | None:intergenic | 40.0% | |
| TCTACTCTTGGGTAGTCTTT+GGG | + | chr7.3:49876205-49876224 | MS.gene83930:intron | 40.0% | |
| TGGATAAGTATAGCGGTGTT+TGG | + | chr7.3:49876922-49876941 | MS.gene83930:CDS | 40.0% | |
| TGGCCTACTTCAAAAATGCT+AGG | + | chr7.3:49875631-49875650 | MS.gene83930:intron | 40.0% | |
| TTCTACTCTTGGGTAGTCTT+TGG | + | chr7.3:49876204-49876223 | MS.gene83930:intron | 40.0% | |
| ! | AATTAAGCGTAGTGGAGATG+AGG | + | chr7.3:49875200-49875219 | MS.gene83930:intron | 40.0% |
| ! | AGCCTATTTAAGGCCTAACT+CGG | - | chr7.3:49876096-49876115 | None:intergenic | 40.0% |
| ! | ATCAGGCCTTTAAAAAGGTC+AGG | - | chr7.3:49875704-49875723 | None:intergenic | 40.0% |
| ! | CCAAGAGTAGAAGTTGATTC+AGG | - | chr7.3:49876196-49876215 | None:intergenic | 40.0% |
| ! | CCAGGCTCAAGCTTTTTATA+AGG | - | chr7.3:49876051-49876070 | None:intergenic | 40.0% |
| ! | GCCTTGTTAATAAACGAGCT+GGG | + | chr7.3:49876070-49876089 | MS.gene83930:intron | 40.0% |
| ! | GCTTCATCAGGCCTTTAAAA+AGG | - | chr7.3:49875709-49875728 | None:intergenic | 40.0% |
| ! | GTTTTGCCCTATATAGGAGT+AGG | - | chr7.3:49875786-49875805 | None:intergenic | 40.0% |
| ! | TATGTTTGGACGGAAGGTTT+TGG | + | chr7.3:49876486-49876505 | MS.gene83930:intron | 40.0% |
| !! | AATTCTACATGAAAGGCGTC+AGG | + | chr7.3:49875564-49875583 | MS.gene83930:intron | 40.0% |
| !! | ATGAGCATATGACGGGTAAT+AGG | - | chr7.3:49875668-49875687 | None:intergenic | 40.0% |
| !! | ATTCTACATGAAAGGCGTCA+GGG | + | chr7.3:49875565-49875584 | MS.gene83930:intron | 40.0% |
| !!! | AGGCCTAGCATTTTTGAAGT+AGG | - | chr7.3:49875637-49875656 | None:intergenic | 40.0% |
| !!! | CTTTGTTTTTGGTCAGTTGC+TGG | + | chr7.3:49876902-49876921 | MS.gene83930:intron | 40.0% |
| !!! | TAGCATTTTTGAAGTAGGCC+AGG | - | chr7.3:49875632-49875651 | None:intergenic | 40.0% |
| AAAATGTAGGTGACGCCTAG+GGG | - | chr7.3:49876158-49876177 | None:intergenic | 45.0% | |
| AAGTGTGAAGGGCAGTTATC+AGG | - | chr7.3:49876740-49876759 | None:intergenic | 45.0% | |
| AATGTCCTCTCTGACCTTTG+TGG | + | chr7.3:49874971-49874990 | MS.gene83930:CDS | 45.0% | |
| AGGTGGTAGAAACTTGGCTT+AGG | + | chr7.3:49875310-49875329 | MS.gene83930:intron | 45.0% | |
| ATAGGCTTTCAGGCTTCATC+AGG | - | chr7.3:49875721-49875740 | None:intergenic | 45.0% | |
| ATAGGGTATGTTTGGACGGA+AGG | + | chr7.3:49876480-49876499 | MS.gene83930:intron | 45.0% | |
| ATCAGCATCACGATCTACAC+GGG | - | chr7.3:49874900-49874919 | None:intergenic | 45.0% | |
| GATACCTCCTTACTCTACCA+TGG | - | chr7.3:49876950-49876969 | None:intergenic | 45.0% | |
| GCCCAGCTCGTTTATTAACA+AGG | - | chr7.3:49876074-49876093 | None:intergenic | 45.0% | |
| GCTCGTTTATTAACAAGGCC+AGG | - | chr7.3:49876069-49876088 | None:intergenic | 45.0% | |
| GCTTCAACAACTGGAAGAGA+AGG | + | chr7.3:49874928-49874947 | MS.gene83930:CDS | 45.0% | |
| GGTATCTCACATCAGAGGAA+TGG | + | chr7.3:49876964-49876983 | MS.gene83930:CDS | 45.0% | |
| GTAAGACCGGCAATGTTGTA+TGG | + | chr7.3:49875141-49875160 | MS.gene83930:intron | 45.0% | |
| GTAGGCTTACATGTGTTGTC+AGG | - | chr7.3:49875768-49875787 | None:intergenic | 45.0% | |
| GTCAGAGAGGACATTAGCTA+CGG | - | chr7.3:49874966-49874985 | None:intergenic | 45.0% | |
| GTCATCAACACAAGGTCCAA+GGG | + | chr7.3:49877059-49877078 | MS.gene83930:CDS | 45.0% | |
| GTCTCGTACAGTTGTAAGAC+CGG | + | chr7.3:49875128-49875147 | MS.gene83930:intron | 45.0% | |
| TGAAGGGCAGTTATCAGGTT+TGG | - | chr7.3:49876735-49876754 | None:intergenic | 45.0% | |
| TGGAGATGAGGATGTTACGT+TGG | + | chr7.3:49875212-49875231 | MS.gene83930:intron | 45.0% | |
| TGGTAGAAACTTGGCTTAGG+TGG | + | chr7.3:49875313-49875332 | MS.gene83930:intron | 45.0% | |
| TGTCATCAACACAAGGTCCA+AGG | + | chr7.3:49877058-49877077 | MS.gene83930:CDS | 45.0% | |
| TTTGGCACCATGGTAGAGTA+AGG | + | chr7.3:49876940-49876959 | MS.gene83930:CDS | 45.0% | |
| ! | CCGTCATATGCTCATTTTCG+AGG | + | chr7.3:49875673-49875692 | MS.gene83930:intron | 45.0% |
| ! | GCCTGACCTGACCTTTTTAA+AGG | + | chr7.3:49875695-49875714 | MS.gene83930:intron | 45.0% |
| ! | GCCTTTAAAAAGGTCAGGTC+AGG | - | chr7.3:49875699-49875718 | None:intergenic | 45.0% |
| ! | GGTCTTGTCCAGAATCCAAA+GGG | + | chr7.3:49876985-49877004 | MS.gene83930:CDS | 45.0% |
| !! | AAGGAGGTATCTCACATCAG+AGG | + | chr7.3:49876959-49876978 | MS.gene83930:CDS | 45.0% |
| !! | CTTTTTCGCAAGCCTTAGTC+TGG | + | chr7.3:49876007-49876026 | MS.gene83930:intron | 45.0% |
| !! | GGCCTTGTTAATAAACGAGC+TGG | + | chr7.3:49876069-49876088 | MS.gene83930:intron | 45.0% |
| !! | TGGTCTTGTCCAGAATCCAA+AGG | + | chr7.3:49876984-49877003 | MS.gene83930:CDS | 45.0% |
| !!! | TTTGGACGGAAGGTTTTGGA+GGG | + | chr7.3:49876490-49876509 | MS.gene83930:intron | 45.0% |
| !!! | TTTTGAAGTAGGCCAGGCTT+AGG | - | chr7.3:49875626-49875645 | None:intergenic | 45.0% |
| AAAAATGCTAGGCCTGAGCC+TGG | + | chr7.3:49875642-49875661 | MS.gene83930:intron | 50.0% | |
| CAAGGCTTCCCTTTGGATTC+TGG | - | chr7.3:49876996-49877015 | None:intergenic | 50.0% | |
| CAGAATCCAAAGGGAAGCCT+TGG | + | chr7.3:49876994-49877013 | MS.gene83930:CDS | 50.0% | |
| CCTACGGCCTAGCCTATTTA+AGG | - | chr7.3:49876106-49876125 | None:intergenic | 50.0% | |
| CCTTAAATAGGCTAGGCCGT+AGG | + | chr7.3:49876103-49876122 | MS.gene83930:intron | 50.0% | |
| GGCCGAGTTAGGCCTTAAAT+AGG | + | chr7.3:49876091-49876110 | MS.gene83930:intron | 50.0% | |
| TATAGCGGTGTTTGGCACCA+TGG | + | chr7.3:49876930-49876949 | MS.gene83930:CDS | 50.0% | |
| TCCAAAGGGAAGCCTTGGTA+TGG | + | chr7.3:49876999-49877018 | MS.gene83930:CDS | 50.0% | |
| !! | AAAGGCGTCAGGGTGGAAAT+GGG | + | chr7.3:49875575-49875594 | MS.gene83930:intron | 50.0% |
| !! | CATATGACGGGTAATAGGCC+AGG | - | chr7.3:49875663-49875682 | None:intergenic | 50.0% |
| !! | GTTTGGACGGAAGGTTTTGG+AGG | + | chr7.3:49876489-49876508 | MS.gene83930:intron | 50.0% |
| !!! | TTGGACGGAAGGTTTTGGAG+GGG | + | chr7.3:49876491-49876510 | MS.gene83930:intron | 50.0% |
| ACCTTTGTGGTCCTGGAGAG+TGG | + | chr7.3:49874984-49875003 | MS.gene83930:CDS | 55.0% | |
| CAGGACCACAAAGGTCAGAG+AGG | - | chr7.3:49874979-49874998 | None:intergenic | 55.0% | |
| CTCTCTGACCTTTGTGGTCC+TGG | + | chr7.3:49874977-49874996 | MS.gene83930:CDS | 55.0% | |
| GCCATACCAAGGCTTCCCTT+TGG | - | chr7.3:49877003-49877022 | None:intergenic | 55.0% | |
| GGCACCATGGTAGAGTAAGG+AGG | + | chr7.3:49876943-49876962 | MS.gene83930:CDS | 55.0% | |
| GGCTTAGGCCTTACAAAGCC+CGG | - | chr7.3:49875611-49875630 | None:intergenic | 55.0% | |
| TAAACGAGCTGGGCCGAGTT+AGG | + | chr7.3:49876080-49876099 | MS.gene83930:intron | 55.0% | |
| TCCACTCTCCAGGACCACAA+AGG | - | chr7.3:49874988-49875007 | None:intergenic | 55.0% | |
| TCCATAGGCATCCACTCTCC+AGG | - | chr7.3:49874998-49875017 | None:intergenic | 55.0% | |
| TCCTGGAGAGTGGATGCCTA+TGG | + | chr7.3:49874994-49875013 | MS.gene83930:CDS | 55.0% | |
| ! | GGCTTTGTAAGGCCTAAGCC+TGG | + | chr7.3:49875611-49875630 | MS.gene83930:intron | 55.0% |
| !! | CTACATGAAAGGCGTCAGGG+TGG | + | chr7.3:49875568-49875587 | MS.gene83930:intron | 55.0% |
| !! | GAAAGGCGTCAGGGTGGAAA+TGG | + | chr7.3:49875574-49875593 | MS.gene83930:intron | 55.0% |
| !!! | ACGGAAGGTTTTGGAGGGGA+GGG | + | chr7.3:49876495-49876514 | MS.gene83930:intron | 55.0% |
| ACGGGTAATAGGCCAGGCTC+AGG | - | chr7.3:49875657-49875676 | None:intergenic | 60.0% | |
| AGCTTAATAGGCCGGCCCGA+TGG | + | chr7.3:49875974-49875993 | MS.gene83930:intron | 60.0% | |
| ATGTAGGTGACGCCTAGGGG+TGG | - | chr7.3:49876155-49876174 | None:intergenic | 60.0% | |
| GCCTATTAAGCCCATCGGGC+CGG | - | chr7.3:49875988-49876007 | None:intergenic | 60.0% | |
| GCTTAATAGGCCGGCCCGAT+GGG | + | chr7.3:49875975-49875994 | MS.gene83930:intron | 60.0% | |
| TGACGCCTAGGGGTGGGAAT+AGG | - | chr7.3:49876148-49876167 | None:intergenic | 60.0% | |
| TGTAGGTGACGCCTAGGGGT+GGG | - | chr7.3:49876154-49876173 | None:intergenic | 60.0% | |
| ! | CGTCAGGGTGGAAATGGGCT+AGG | + | chr7.3:49875580-49875599 | MS.gene83930:intron | 60.0% |
| !! | AGGGTGGAAATGGGCTAGGC+CGG | + | chr7.3:49875584-49875603 | MS.gene83930:intron | 60.0% |
| !!! | GACGGAAGGTTTTGGAGGGG+AGG | + | chr7.3:49876494-49876513 | MS.gene83930:intron | 60.0% |
| AATAGGCCAGGCCGTCCGAC+AGG | - | chr7.3:49876131-49876150 | None:intergenic | 65.0% | |
| AGGCCTTACAAAGCCCGGCC+CGG | - | chr7.3:49875606-49875625 | None:intergenic | 65.0% | |
| ATAGGCCAGGCCGTCCGACA+GGG | - | chr7.3:49876130-49876149 | None:intergenic | 65.0% | |
| CCTAGGGGTGGGAATAGGCC+AGG | - | chr7.3:49876143-49876162 | None:intergenic | 65.0% | |
| CCTGGCCTATTCCCACCCCT+AGG | + | chr7.3:49876140-49876159 | MS.gene83930:intron | 65.0% | |
| CTCCAGAGTGACACGGCCCT+TGG | - | chr7.3:49877078-49877097 | None:intergenic | 65.0% | |
| ! | GCCGGCCCGATGGGCTTAAT+AGG | + | chr7.3:49875984-49876003 | MS.gene83930:intron | 65.0% |
| ! | GTCCAAGGGCCGTGTCACTC+TGG | + | chr7.3:49877073-49877092 | MS.gene83930:CDS | 65.0% |
| !! | GGGTGGAAATGGGCTAGGCC+GGG | + | chr7.3:49875585-49875604 | MS.gene83930:intron | 65.0% |
| GCTAGGCCGTAGGCCCCTGT+CGG | + | chr7.3:49876113-49876132 | MS.gene83930:intron | 70.0% | |
| TAGGCCAGGCCGTCCGACAG+GGG | - | chr7.3:49876129-49876148 | None:intergenic | 70.0% | |
| ! | AGGCCGGGCCGGGCTTTGTA+AGG | + | chr7.3:49875600-49875619 | MS.gene83930:intron | 70.0% |
| !! | GAAATGGGCTAGGCCGGGCC+GGG | + | chr7.3:49875590-49875609 | MS.gene83930:intron | 70.0% |
| !! | GGAAATGGGCTAGGCCGGGC+CGG | + | chr7.3:49875589-49875608 | MS.gene83930:intron | 70.0% |
| GGCCGTAGGCCCCTGTCGGA+CGG | + | chr7.3:49876117-49876136 | MS.gene83930:intron | 75.0% | |
| GGCCGTCCGACAGGGGCCTA+CGG | - | chr7.3:49876122-49876141 | None:intergenic | 75.0% | |
| TAGGCCCCTGTCGGACGGCC+TGG | + | chr7.3:49876122-49876141 | MS.gene83930:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 49874876 | 49877127 | 49874876 | ID=MS.gene83930 |
| chr7.3 | mRNA | 49874876 | 49877127 | 49874876 | ID=MS.gene83930.t1;Parent=MS.gene83930 |
| chr7.3 | exon | 49874876 | 49875033 | 49874876 | ID=MS.gene83930.t1.exon1;Parent=MS.gene83930.t1 |
| chr7.3 | CDS | 49874876 | 49875033 | 49874876 | ID=cds.MS.gene83930.t1;Parent=MS.gene83930.t1 |
| chr7.3 | exon | 49876918 | 49877127 | 49876918 | ID=MS.gene83930.t1.exon2;Parent=MS.gene83930.t1 |
| chr7.3 | CDS | 49876918 | 49877127 | 49876918 | ID=cds.MS.gene83930.t1;Parent=MS.gene83930.t1 |
| Gene Sequence |
| Protein sequence |
