Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051716.t1 | KEH22586.1 | 100 | 129 | 0 | 0 | 1 | 129 | 1 | 129 | 9.60E-69 | 269.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051716.t1 | Q9SFV2 | 81.1 | 122 | 23 | 0 | 8 | 129 | 199 | 320 | 6.8e-55 | 214.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051716.t1 | A0A072TZF1 | 100.0 | 129 | 0 | 0 | 1 | 129 | 1 | 129 | 6.9e-69 | 269.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050985 | MS.gene051716 | 0.848507 | 5.86E-60 | -1.69E-46 |
| MS.gene051716 | MS.gene063161 | 0.801392 | 9.20E-49 | -1.69E-46 |
| MS.gene051716 | MS.gene06786 | 0.82803 | 1.13E-54 | -1.69E-46 |
| MS.gene051716 | MS.gene06835 | 0.803356 | 3.63E-49 | -1.69E-46 |
| MS.gene051716 | MS.gene073207 | 0.811551 | 6.62E-51 | -1.69E-46 |
| MS.gene051716 | MS.gene07417 | 0.811634 | 6.35E-51 | -1.69E-46 |
| MS.gene051716 | MS.gene46990 | 0.818609 | 1.79E-52 | -1.69E-46 |
| MS.gene051716 | MS.gene83930 | 0.870408 | 1.49E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051716.t1 | MTR_7g055863 | 100.000 | 129 | 0 | 0 | 1 | 129 | 1 | 129 | 2.89e-93 | 265 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051716.t1 | AT3G07220 | 81.148 | 122 | 23 | 0 | 8 | 129 | 199 | 320 | 5.68e-70 | 213 |
Find 44 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGCTTCCCTTTGGATTC+TGG | 0.178993 | 7.3:-49772557 | None:intergenic |
| CTCTCTGACCTTTGTGGTCC+TGG | 0.263806 | 7.3:+49770531 | MS.gene051716:CDS |
| ATGTTTCTTTCTCCAGTCCT+AGG | 0.407473 | 7.3:+49770352 | MS.gene051716:CDS |
| CTCCAGGGTGACACGGCCCT+TGG | 0.421058 | 7.3:-49772639 | None:intergenic |
| TAATCTTCAGCTTCAACAAC+TGG | 0.425736 | 7.3:+49770473 | MS.gene051716:CDS |
| GCCATACCAAGGCTTCCCTT+TGG | 0.445854 | 7.3:-49772564 | None:intergenic |
| TGGATAAGTATAGCGGTGTT+TGG | 0.449914 | 7.3:+49772486 | MS.gene051716:CDS |
| GTGTTGATGACAAAATGTTC+CGG | 0.456468 | 7.3:-49772611 | None:intergenic |
| ATGGCTTACTTATGCTACTA+AGG | 0.470651 | 7.3:+49772582 | MS.gene051716:CDS |
| AATGTCCTCTCTGACCTTTG+TGG | 0.471044 | 7.3:+49770525 | MS.gene051716:CDS |
| TGTTGATGACAAAATGTTCC+GGG | 0.478076 | 7.3:-49772610 | None:intergenic |
| ACCTTTGTGGTCCTGGAGAG+TGG | 0.489556 | 7.3:+49770538 | MS.gene051716:CDS |
| TTTCTTACCTGCAGATAAGA+AGG | 0.494097 | 7.3:+49770416 | MS.gene051716:intron |
| CAGAATCCAAAGGGAAGCCT+TGG | 0.507519 | 7.3:+49772558 | MS.gene051716:CDS |
| TCCATAGGCATCCACTCTCC+AGG | 0.509243 | 7.3:-49770549 | None:intergenic |
| TTTGGCACCATGGTAGAGTA+AGG | 0.524810 | 7.3:+49772504 | MS.gene051716:CDS |
| TGTCATCAACACAAGGTCCA+AGG | 0.532387 | 7.3:+49772622 | MS.gene051716:CDS |
| TCCAAAGGGAAGCCTTGGTA+TGG | 0.543849 | 7.3:+49772563 | MS.gene051716:CDS |
| GCCAAGATCCAACCTAGGAC+TGG | 0.544817 | 7.3:-49770364 | None:intergenic |
| TCCTGGAGAGTGGATGCCTA+TGG | 0.551597 | 7.3:+49770548 | MS.gene051716:CDS |
| GTCCAAGGGCCGTGTCACCC+TGG | 0.553411 | 7.3:+49772637 | MS.gene051716:CDS |
| GTCATCAACACAAGGTCCAA+GGG | 0.568455 | 7.3:+49772623 | MS.gene051716:CDS |
| AGACAAGAGAAACAAACTCC+AGG | 0.571443 | 7.3:-49772655 | None:intergenic |
| ACAGCATGAAGTTTCTCCAT+AGG | 0.587132 | 7.3:-49770564 | None:intergenic |
| GGTCTTGTCCAGAATCCAAA+GGG | 0.593387 | 7.3:+49772549 | MS.gene051716:CDS |
| GTCAGAGAGGACATTAGCTA+CGG | 0.595279 | 7.3:-49770517 | None:intergenic |
| TATAGCGGTGTTTGGCACCA+TGG | 0.596762 | 7.3:+49772494 | MS.gene051716:CDS |
| GCTTCAACAACTGGAAGAGA+AGG | 0.599134 | 7.3:+49770482 | MS.gene051716:CDS |
| GGTATCTCACATCAGAGGAA+TGG | 0.604584 | 7.3:+49772528 | MS.gene051716:CDS |
| GACAAGAGAAACAAACTCCA+GGG | 0.611994 | 7.3:-49772654 | None:intergenic |
| CCTGCAGATAAGAAGGCAGA+AGG | 0.612129 | 7.3:+49770423 | MS.gene051716:intron |
| ATCAGCATCACGATCTACAC+GGG | 0.612476 | 7.3:-49770451 | None:intergenic |
| AAACAAACTCCAGGGTGACA+CGG | 0.612740 | 7.3:-49772646 | None:intergenic |
| TATCAGCATCACGATCTACA+CGG | 0.630462 | 7.3:-49770452 | None:intergenic |
| TGGTCTTGTCCAGAATCCAA+AGG | 0.639302 | 7.3:+49772548 | MS.gene051716:CDS |
| AGCATAAGTAAGCCATACCA+AGG | 0.652862 | 7.3:-49772575 | None:intergenic |
| AAGGAGGTATCTCACATCAG+AGG | 0.661349 | 7.3:+49772523 | MS.gene051716:CDS |
| TATGCTACTAAGGAAATACC+CGG | 0.664324 | 7.3:+49772592 | MS.gene051716:CDS |
| GATACCTCCTTACTCTACCA+TGG | 0.665056 | 7.3:-49772511 | None:intergenic |
| TATGGAGAAACTTCATGCTG+TGG | 0.675962 | 7.3:+49770566 | MS.gene051716:CDS |
| TCCACTCTCCAGGACCACAA+AGG | 0.684843 | 7.3:-49770539 | None:intergenic |
| GGCACCATGGTAGAGTAAGG+AGG | 0.693530 | 7.3:+49772507 | MS.gene051716:CDS |
| CAGTTGCTGGATAAGTATAG+CGG | 0.697694 | 7.3:+49772479 | MS.gene051716:intron |
| CAGGACCACAAAGGTCAGAG+AGG | 0.722830 | 7.3:-49770530 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTAAAAGAATAAAAGA+TGG | + | chr7.3:49771280-49771299 | MS.gene051716:intron | 10.0% |
| !! | TCAAATATATTTGAAAATAT+AGG | + | chr7.3:49771617-49771636 | MS.gene051716:intron | 10.0% |
| !!! | ATTTTAAACTATATATCATA+TGG | - | chr7.3:49772166-49772185 | None:intergenic | 10.0% |
| !! | TTAAATGACTTGATTAATAA+GGG | + | chr7.3:49771408-49771427 | MS.gene051716:intron | 15.0% |
| !! | AATTGTGATATGAAGAAATA+AGG | - | chr7.3:49771809-49771828 | None:intergenic | 20.0% |
| !! | GTTAAATGACTTGATTAATA+AGG | + | chr7.3:49771407-49771426 | MS.gene051716:intron | 20.0% |
| !! | TATTAGAGAAACTATTTAGA+AGG | + | chr7.3:49770944-49770963 | MS.gene051716:intron | 20.0% |
| !! | TGATATATGATAGAACATTA+TGG | + | chr7.3:49770997-49771016 | MS.gene051716:intron | 20.0% |
| !! | TTTGTAACATTAAAACAAAG+TGG | + | chr7.3:49772027-49772046 | MS.gene051716:intron | 20.0% |
| !!! | CAGTCAATTATTTTAGTTAT+TGG | - | chr7.3:49771435-49771454 | None:intergenic | 20.0% |
| ! | AACAACATTTCTGTATTCTA+AGG | - | chr7.3:49771694-49771713 | None:intergenic | 25.0% |
| ! | ACAACATTTCTGTATTCTAA+GGG | - | chr7.3:49771693-49771712 | None:intergenic | 25.0% |
| ! | CATTTAACTATTCCAAGTAT+GGG | - | chr7.3:49771395-49771414 | None:intergenic | 25.0% |
| ! | TATATGATAGAACATTATGG+CGG | + | chr7.3:49771000-49771019 | MS.gene051716:intron | 25.0% |
| ! | TCATTTAACTATTCCAAGTA+TGG | - | chr7.3:49771396-49771415 | None:intergenic | 25.0% |
| ! | TTTAACAACCTTAATTGACA+TGG | + | chr7.3:49770393-49770412 | MS.gene051716:intron | 25.0% |
| ! | TTTGCTTAAGGAAAAAACTT+AGG | + | chr7.3:49772231-49772250 | MS.gene051716:intron | 25.0% |
| !! | CTATTGGATTCTAAAAATGT+AGG | - | chr7.3:49771145-49771164 | None:intergenic | 25.0% |
| !! | GATTAAAACATTCCCAATTT+TGG | - | chr7.3:49771211-49771230 | None:intergenic | 25.0% |
| !! | GTTTCTCTAATAGTTTTTCT+AGG | - | chr7.3:49770936-49770955 | None:intergenic | 25.0% |
| !! | TGTTTAATAAGAAGTGTGAA+GGG | - | chr7.3:49772320-49772339 | None:intergenic | 25.0% |
| !! | TTTGGGATTTATCCAAAATT+GGG | + | chr7.3:49771196-49771215 | MS.gene051716:intron | 25.0% |
| !! | TTTTTAATGTGTTCCAAACA+TGG | - | chr7.3:49771333-49771352 | None:intergenic | 25.0% |
| !!! | AGTTTTTTCCTTAAGCAAAT+AGG | - | chr7.3:49772230-49772249 | None:intergenic | 25.0% |
| !!! | TTTTTAGAATCCAATAGTTC+CGG | + | chr7.3:49771148-49771167 | MS.gene051716:intron | 25.0% |
| AAATTACATAACCAGATGAC+TGG | - | chr7.3:49771731-49771750 | None:intergenic | 30.0% | |
| AACACTCAGAGATAAAACAA+AGG | - | chr7.3:49772445-49772464 | None:intergenic | 30.0% | |
| AACCTTGTTGATGCTTATAA+AGG | - | chr7.3:49772006-49772025 | None:intergenic | 30.0% | |
| ACATTATCATAGGGTATGTT+TGG | + | chr7.3:49771458-49771477 | MS.gene051716:intron | 30.0% | |
| AGAAACTATTTAGAAGGATC+TGG | + | chr7.3:49770950-49770969 | MS.gene051716:intron | 30.0% | |
| AGAACTATGCATGAAATGAA+CGG | + | chr7.3:49771964-49771983 | MS.gene051716:intron | 30.0% | |
| AGTGGAAATGTTGAAAATAG+TGG | + | chr7.3:49772045-49772064 | MS.gene051716:intron | 30.0% | |
| ATGACAATATTAGAGAGAGT+TGG | + | chr7.3:49770824-49770843 | MS.gene051716:intron | 30.0% | |
| GTAAGAAACCATGTCAATTA+AGG | - | chr7.3:49770404-49770423 | None:intergenic | 30.0% | |
| TAAGATCAGCAATGTTGTAT+GGG | + | chr7.3:49770697-49770716 | MS.gene051716:intron | 30.0% | |
| TAGAAAAGATGGTAGAAACT+TGG | + | chr7.3:49770861-49770880 | MS.gene051716:intron | 30.0% | |
| TGACAATATTAGAGAGAGTT+GGG | + | chr7.3:49770825-49770844 | MS.gene051716:intron | 30.0% | |
| TGACTGCAAACATTATCATA+GGG | + | chr7.3:49771449-49771468 | MS.gene051716:intron | 30.0% | |
| TTCCTTTATAAGCATCAACA+AGG | + | chr7.3:49772001-49772020 | MS.gene051716:intron | 30.0% | |
| TTGACTGCAAACATTATCAT+AGG | + | chr7.3:49771448-49771467 | MS.gene051716:intron | 30.0% | |
| TTTACGTTATTACCCATACT+TGG | + | chr7.3:49771380-49771399 | MS.gene051716:intron | 30.0% | |
| ! | AACATTTTGTCATCAACACA+AGG | + | chr7.3:49772615-49772634 | MS.gene051716:CDS | 30.0% |
| ! | ATAGTTGCAAAAAGTGCAAA+AGG | - | chr7.3:49772343-49772362 | None:intergenic | 30.0% |
| ! | CATATCACAATTTTCATGCA+AGG | + | chr7.3:49771817-49771836 | MS.gene051716:intron | 30.0% |
| ! | GAAATGTTGAAAATAGTGGA+AGG | + | chr7.3:49772049-49772068 | MS.gene051716:intron | 30.0% |
| ! | GTGTTTAATAAGAAGTGTGA+AGG | - | chr7.3:49772321-49772340 | None:intergenic | 30.0% |
| ! | GTTATGTAATTTAGAGTCCT+AGG | + | chr7.3:49771739-49771758 | MS.gene051716:intron | 30.0% |
| ! | TAATTTAGAGTCCTAGGATT+GGG | + | chr7.3:49771745-49771764 | MS.gene051716:intron | 30.0% |
| ! | TCTACCATCTTTTCTACAAT+AGG | - | chr7.3:49770857-49770876 | None:intergenic | 30.0% |
| !! | CTTTGGGATTTATCCAAAAT+TGG | + | chr7.3:49771195-49771214 | MS.gene051716:intron | 30.0% |
| AACATGAATGAGTAGCAGAA+AGG | + | chr7.3:49770654-49770673 | MS.gene051716:intron | 35.0% | |
| ACATGACATGACAAGAATAC+TGG | - | chr7.3:49772395-49772414 | None:intergenic | 35.0% | |
| AGCACCTATTGTAGAAAAGA+TGG | + | chr7.3:49770850-49770869 | MS.gene051716:intron | 35.0% | |
| ATACCTTTCATGCAGAATTC+TGG | - | chr7.3:49771120-49771139 | None:intergenic | 35.0% | |
| ATGGCTTACTTATGCTACTA+AGG | + | chr7.3:49772582-49772601 | MS.gene051716:CDS | 35.0% | |
| ATTCCTAACTATTGCTCATC+TGG | + | chr7.3:49771883-49771902 | MS.gene051716:intron | 35.0% | |
| CTAAGGGAATCAGACTTTAA+GGG | - | chr7.3:49771677-49771696 | None:intergenic | 35.0% | |
| GACAATATTAGAGAGAGTTG+GGG | + | chr7.3:49770826-49770845 | MS.gene051716:intron | 35.0% | |
| GTAAGATCAGCAATGTTGTA+TGG | + | chr7.3:49770696-49770715 | MS.gene051716:intron | 35.0% | |
| TAATCTTCAGCTTCAACAAC+TGG | + | chr7.3:49770473-49770492 | MS.gene051716:CDS | 35.0% | |
| TACGCTTAATTTACTCGTGT+TGG | - | chr7.3:49770746-49770765 | None:intergenic | 35.0% | |
| TATCATAGGGTATGTTTGGA+TGG | + | chr7.3:49771462-49771481 | MS.gene051716:intron | 35.0% | |
| TATGCTACTAAGGAAATACC+CGG | + | chr7.3:49772592-49772611 | MS.gene051716:CDS | 35.0% | |
| TCAAACCGTAAATCAACTCA+AGG | - | chr7.3:49771307-49771326 | None:intergenic | 35.0% | |
| TCTAAGGGAATCAGACTTTA+AGG | - | chr7.3:49771678-49771697 | None:intergenic | 35.0% | |
| TGATGCATCTCAAATGCATT+TGG | + | chr7.3:49772191-49772210 | MS.gene051716:intron | 35.0% | |
| TTCACAGACCTATTTGCTTA+AGG | + | chr7.3:49772219-49772238 | MS.gene051716:intron | 35.0% | |
| TTTCTTACCTGCAGATAAGA+AGG | + | chr7.3:49770416-49770435 | MS.gene051716:intron | 35.0% | |
| ! | CACAATTTTCATGCAAGGAT+GGG | + | chr7.3:49771822-49771841 | MS.gene051716:intron | 35.0% |
| ! | GGAGATTAATGAGTTGGATA+GGG | + | chr7.3:49770971-49770990 | MS.gene051716:intron | 35.0% |
| ! | GTAATTTAGAGTCCTAGGAT+TGG | + | chr7.3:49771744-49771763 | MS.gene051716:intron | 35.0% |
| ! | TACGGTTTGATTTCCATGTT+TGG | + | chr7.3:49771317-49771336 | MS.gene051716:intron | 35.0% |
| ! | TCACAATTTTCATGCAAGGA+TGG | + | chr7.3:49771821-49771840 | MS.gene051716:intron | 35.0% |
| ! | TGGAGATTAATGAGTTGGAT+AGG | + | chr7.3:49770970-49770989 | MS.gene051716:intron | 35.0% |
| !! | ATGGACCTTGAGTTGATTTA+CGG | + | chr7.3:49771299-49771318 | MS.gene051716:intron | 35.0% |
| !! | GTGTTGATGACAAAATGTTC+CGG | - | chr7.3:49772614-49772633 | None:intergenic | 35.0% |
| !! | TGTTGATGACAAAATGTTCC+GGG | - | chr7.3:49772613-49772632 | None:intergenic | 35.0% |
| !!! | TCTGAGTGTTGCTTTGTTTT+TGG | + | chr7.3:49772455-49772474 | MS.gene051716:intron | 35.0% |
| AAGCAATATCCCACTAAGTG+AGG | - | chr7.3:49771046-49771065 | None:intergenic | 40.0% | |
| AAGTGTGAAGGGAAGTTATC+AGG | - | chr7.3:49772309-49772328 | None:intergenic | 40.0% | |
| AATATCCCACTAAGTGAGGT+AGG | - | chr7.3:49771042-49771061 | None:intergenic | 40.0% | |
| ACAGCATGAAGTTTCTCCAT+AGG | - | chr7.3:49770567-49770586 | None:intergenic | 40.0% | |
| AGACAAGAGAAACAAACTCC+AGG | - | chr7.3:49772658-49772677 | None:intergenic | 40.0% | |
| AGATGGTAGAAACTTGGCTT+AGG | + | chr7.3:49770867-49770886 | MS.gene051716:intron | 40.0% | |
| AGCATAAGTAAGCCATACCA+AGG | - | chr7.3:49772578-49772597 | None:intergenic | 40.0% | |
| AGGATGTTACGTTGGATATG+TGG | + | chr7.3:49770775-49770794 | MS.gene051716:intron | 40.0% | |
| ATAGGGTATGTTTGGATGGA+GGG | + | chr7.3:49771466-49771485 | MS.gene051716:intron | 40.0% | |
| ATGCAGAGTCAAATCACTAG+AGG | + | chr7.3:49770900-49770919 | MS.gene051716:intron | 40.0% | |
| ATGTAACCTACCTCACTTAG+TGG | + | chr7.3:49771033-49771052 | MS.gene051716:intron | 40.0% | |
| ATGTTTCTTTCTCCAGTCCT+AGG | + | chr7.3:49770352-49770371 | MS.gene051716:CDS | 40.0% | |
| CACGAGTAAATTAAGCGTAG+TGG | + | chr7.3:49770747-49770766 | MS.gene051716:intron | 40.0% | |
| CAGTTGCTGGATAAGTATAG+CGG | + | chr7.3:49772479-49772498 | MS.gene051716:intron | 40.0% | |
| CGGAATCAACTTCTACTCTT+GGG | + | chr7.3:49771168-49771187 | MS.gene051716:intron | 40.0% | |
| CTACCAGATGAGCAATAGTT+AGG | - | chr7.3:49771889-49771908 | None:intergenic | 40.0% | |
| GACAAGAGAAACAAACTCCA+GGG | - | chr7.3:49772657-49772676 | None:intergenic | 40.0% | |
| GAGCTATGACTAATCAGTAC+AGG | - | chr7.3:49771774-49771793 | None:intergenic | 40.0% | |
| GGATCTGGAGATTAATGAGT+TGG | + | chr7.3:49770965-49770984 | MS.gene051716:intron | 40.0% | |
| TATCAGCATCACGATCTACA+CGG | - | chr7.3:49770455-49770474 | None:intergenic | 40.0% | |
| TATGGAGAAACTTCATGCTG+TGG | + | chr7.3:49770566-49770585 | MS.gene051716:CDS | 40.0% | |
| TCACCAGAATTCTGCATGAA+AGG | + | chr7.3:49771114-49771133 | MS.gene051716:intron | 40.0% | |
| TCTACTCTTGGGTAGTCTTT+GGG | + | chr7.3:49771179-49771198 | MS.gene051716:intron | 40.0% | |
| TCTGGTGACAGCAACTAAAA+TGG | - | chr7.3:49771102-49771121 | None:intergenic | 40.0% | |
| TGGATAAGTATAGCGGTGTT+TGG | + | chr7.3:49772486-49772505 | MS.gene051716:CDS | 40.0% | |
| TGTAACCTACCTCACTTAGT+GGG | + | chr7.3:49771034-49771053 | MS.gene051716:intron | 40.0% | |
| TTAAAGCCAAGATCCAACCT+AGG | - | chr7.3:49770372-49770391 | None:intergenic | 40.0% | |
| TTCTACTCTTGGGTAGTCTT+TGG | + | chr7.3:49771178-49771197 | MS.gene051716:intron | 40.0% | |
| ! | AATTAAGCGTAGTGGAGATG+AGG | + | chr7.3:49770755-49770774 | MS.gene051716:intron | 40.0% |
| ! | CAGACTTTAAGGGTCTGTTT+GGG | - | chr7.3:49771667-49771686 | None:intergenic | 40.0% |
| ! | CCAAGAGTAGAAGTTGATTC+CGG | - | chr7.3:49771170-49771189 | None:intergenic | 40.0% |
| ! | GAAGTTGATTCCGGAACTAT+TGG | - | chr7.3:49771161-49771180 | None:intergenic | 40.0% |
| ! | TATGTTTGGATGGAGGGTTT+TGG | + | chr7.3:49771472-49771491 | MS.gene051716:intron | 40.0% |
| ! | TCAGACTTTAAGGGTCTGTT+TGG | - | chr7.3:49771668-49771687 | None:intergenic | 40.0% |
| !!! | CTTTGTTTTTGGTCAGTTGC+TGG | + | chr7.3:49772466-49772485 | MS.gene051716:intron | 40.0% |
| AAACAAACTCCAGGGTGACA+CGG | - | chr7.3:49772649-49772668 | None:intergenic | 45.0% | |
| AATGTCCTCTCTGACCTTTG+TGG | + | chr7.3:49770525-49770544 | MS.gene051716:CDS | 45.0% | |
| AGTACAGGTAACCCAATCCT+AGG | - | chr7.3:49771759-49771778 | None:intergenic | 45.0% | |
| ATCAGCATCACGATCTACAC+GGG | - | chr7.3:49770454-49770473 | None:intergenic | 45.0% | |
| ATGCATAGTTCTCACCTACG+TGG | - | chr7.3:49771956-49771975 | None:intergenic | 45.0% | |
| CAGAGTCAAATCACTAGAGG+CGG | + | chr7.3:49770903-49770922 | MS.gene051716:intron | 45.0% | |
| CATAGGGTATGTTTGGATGG+AGG | + | chr7.3:49771465-49771484 | MS.gene051716:intron | 45.0% | |
| CCGGAATCAACTTCTACTCT+TGG | + | chr7.3:49771167-49771186 | MS.gene051716:intron | 45.0% | |
| CGTAGTCATAACCAGTCATC+TGG | + | chr7.3:49771717-49771736 | MS.gene051716:intron | 45.0% | |
| GATACCTCCTTACTCTACCA+TGG | - | chr7.3:49772514-49772533 | None:intergenic | 45.0% | |
| GCTTCAACAACTGGAAGAGA+AGG | + | chr7.3:49770482-49770501 | MS.gene051716:CDS | 45.0% | |
| GGTATCTCACATCAGAGGAA+TGG | + | chr7.3:49772528-49772547 | MS.gene051716:CDS | 45.0% | |
| GTCAGAGAGGACATTAGCTA+CGG | - | chr7.3:49770520-49770539 | None:intergenic | 45.0% | |
| GTCATCAACACAAGGTCCAA+GGG | + | chr7.3:49772623-49772642 | MS.gene051716:CDS | 45.0% | |
| TGAAGGGAAGTTATCAGGTC+TGG | - | chr7.3:49772304-49772323 | None:intergenic | 45.0% | |
| TGCATAGTTCTCACCTACGT+GGG | - | chr7.3:49771955-49771974 | None:intergenic | 45.0% | |
| TGGAGATGAGGATGTTACGT+TGG | + | chr7.3:49770767-49770786 | MS.gene051716:intron | 45.0% | |
| TGGTAGAAACTTGGCTTAGG+TGG | + | chr7.3:49770870-49770889 | MS.gene051716:intron | 45.0% | |
| TGTCATCAACACAAGGTCCA+AGG | + | chr7.3:49772622-49772641 | MS.gene051716:CDS | 45.0% | |
| TTCTTTCTCCAGTCCTAGGT+TGG | + | chr7.3:49770356-49770375 | MS.gene051716:intron | 45.0% | |
| TTTAAGGGTCTGTTTGGGAG+GGG | - | chr7.3:49771662-49771681 | None:intergenic | 45.0% | |
| TTTATACAACCCACCCACGT+AGG | + | chr7.3:49771939-49771958 | MS.gene051716:intron | 45.0% | |
| TTTGGCACCATGGTAGAGTA+AGG | + | chr7.3:49772504-49772523 | MS.gene051716:CDS | 45.0% | |
| ! | ACTTTAAGGGTCTGTTTGGG+AGG | - | chr7.3:49771664-49771683 | None:intergenic | 45.0% |
| ! | CTTTAAGGGTCTGTTTGGGA+GGG | - | chr7.3:49771663-49771682 | None:intergenic | 45.0% |
| ! | GGTCTTGTCCAGAATCCAAA+GGG | + | chr7.3:49772549-49772568 | MS.gene051716:CDS | 45.0% |
| !! | AAGGAGGTATCTCACATCAG+AGG | + | chr7.3:49772523-49772542 | MS.gene051716:CDS | 45.0% |
| !! | TGGTCTTGTCCAGAATCCAA+AGG | + | chr7.3:49772548-49772567 | MS.gene051716:CDS | 45.0% |
| !!! | TTTGGATGGAGGGTTTTGGA+GGG | + | chr7.3:49771476-49771495 | MS.gene051716:intron | 45.0% |
| ATAGTTCTCACCTACGTGGG+TGG | - | chr7.3:49771952-49771971 | None:intergenic | 50.0% | |
| CAAGGCTTCCCTTTGGATTC+TGG | - | chr7.3:49772560-49772579 | None:intergenic | 50.0% | |
| CAGAATCCAAAGGGAAGCCT+TGG | + | chr7.3:49772558-49772577 | MS.gene051716:CDS | 50.0% | |
| CCTGCAGATAAGAAGGCAGA+AGG | + | chr7.3:49770423-49770442 | MS.gene051716:intron | 50.0% | |
| CCTTCTGCCTTCTTATCTGC+AGG | - | chr7.3:49770426-49770445 | None:intergenic | 50.0% | |
| CTTGTTGCTCTCTGTGGAGA+AGG | + | chr7.3:49772116-49772135 | MS.gene051716:intron | 50.0% | |
| TAGTTCTCACCTACGTGGGT+GGG | - | chr7.3:49771951-49771970 | None:intergenic | 50.0% | |
| TATAGCGGTGTTTGGCACCA+TGG | + | chr7.3:49772494-49772513 | MS.gene051716:CDS | 50.0% | |
| TCCAAAGGGAAGCCTTGGTA+TGG | + | chr7.3:49772563-49772582 | MS.gene051716:CDS | 50.0% | |
| ! | CTGCTACTTGTTGCTCTCTG+TGG | + | chr7.3:49772110-49772129 | MS.gene051716:intron | 50.0% |
| ! | TCCAGTCCTAGGTTGGATCT+TGG | + | chr7.3:49770363-49770382 | MS.gene051716:intron | 50.0% |
| !! | GTTTGGATGGAGGGTTTTGG+AGG | + | chr7.3:49771475-49771494 | MS.gene051716:intron | 50.0% |
| !!! | TTGGATGGAGGGTTTTGGAG+GGG | + | chr7.3:49771477-49771496 | MS.gene051716:intron | 50.0% |
| ACCTTTGTGGTCCTGGAGAG+TGG | + | chr7.3:49770538-49770557 | MS.gene051716:CDS | 55.0% | |
| CAGGACCACAAAGGTCAGAG+AGG | - | chr7.3:49770533-49770552 | None:intergenic | 55.0% | |
| CTCTCTGACCTTTGTGGTCC+TGG | + | chr7.3:49770531-49770550 | MS.gene051716:CDS | 55.0% | |
| GCCAAGATCCAACCTAGGAC+TGG | - | chr7.3:49770367-49770386 | None:intergenic | 55.0% | |
| GCCATACCAAGGCTTCCCTT+TGG | - | chr7.3:49772567-49772586 | None:intergenic | 55.0% | |
| GGCACCATGGTAGAGTAAGG+AGG | + | chr7.3:49772507-49772526 | MS.gene051716:CDS | 55.0% | |
| TCCACTCTCCAGGACCACAA+AGG | - | chr7.3:49770542-49770561 | None:intergenic | 55.0% | |
| TCCATAGGCATCCACTCTCC+AGG | - | chr7.3:49770552-49770571 | None:intergenic | 55.0% | |
| TCCTGGAGAGTGGATGCCTA+TGG | + | chr7.3:49770548-49770567 | MS.gene051716:CDS | 55.0% | |
| !!! | ATGGAGGGTTTTGGAGGGGA+GGG | + | chr7.3:49771481-49771500 | MS.gene051716:intron | 55.0% |
| AAGGGTCTGTTTGGGAGGGG+AGG | - | chr7.3:49771659-49771678 | None:intergenic | 60.0% | |
| AGGGTCTGTTTGGGAGGGGA+GGG | - | chr7.3:49771658-49771677 | None:intergenic | 60.0% | |
| TGTTTGGGAGGGGAGGGCTT+CGG | - | chr7.3:49771652-49771671 | None:intergenic | 60.0% | |
| !!! | GATGGAGGGTTTTGGAGGGG+AGG | + | chr7.3:49771480-49771499 | MS.gene051716:intron | 60.0% |
| CTCCAGGGTGACACGGCCCT+TGG | - | chr7.3:49772642-49772661 | None:intergenic | 70.0% | |
| GTCCAAGGGCCGTGTCACCC+TGG | + | chr7.3:49772637-49772656 | MS.gene051716:CDS | 70.0% | |
| TGGGAGGGGAGGGCTTCGGA+GGG | - | chr7.3:49771648-49771667 | None:intergenic | 70.0% | |
| TTGGGAGGGGAGGGCTTCGG+AGG | - | chr7.3:49771649-49771668 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 49770352 | 49772691 | 49770352 | ID=MS.gene051716 |
| chr7.3 | mRNA | 49770352 | 49772691 | 49770352 | ID=MS.gene051716.t1;Parent=MS.gene051716 |
| chr7.3 | exon | 49770352 | 49770373 | 49770352 | ID=MS.gene051716.t1.exon1;Parent=MS.gene051716.t1 |
| chr7.3 | CDS | 49770352 | 49770373 | 49770352 | ID=cds.MS.gene051716.t1;Parent=MS.gene051716.t1 |
| chr7.3 | exon | 49770430 | 49770587 | 49770430 | ID=MS.gene051716.t1.exon2;Parent=MS.gene051716.t1 |
| chr7.3 | CDS | 49770430 | 49770587 | 49770430 | ID=cds.MS.gene051716.t1;Parent=MS.gene051716.t1 |
| chr7.3 | exon | 49772482 | 49772691 | 49772482 | ID=MS.gene051716.t1.exon3;Parent=MS.gene051716.t1 |
| chr7.3 | CDS | 49772482 | 49772691 | 49772482 | ID=cds.MS.gene051716.t1;Parent=MS.gene051716.t1 |
| Gene Sequence |
| Protein sequence |
