AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84147


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84147.t1 MTR_4g119422 49.189 370 143 8 7 336 3 367 1.48e-99 299
MS.gene84147.t1 MTR_4g131910 79.348 184 29 1 138 312 59 242 1.24e-92 276
MS.gene84147.t1 MTR_4g131910 89.157 83 8 1 1 83 1 82 7.54e-45 154
MS.gene84147.t1 MTR_4g119490 59.563 183 74 0 3 185 1 183 3.70e-63 200
MS.gene84147.t1 MTR_4g119450 54.144 181 83 0 3 183 1 181 1.43e-57 186
MS.gene84147.t1 MTR_4g119413 51.648 182 88 0 1 182 3 184 2.94e-57 196
MS.gene84147.t1 MTR_2g437390 52.198 182 87 0 1 182 1 182 5.18e-57 197
MS.gene84147.t1 MTR_4g119413 51.648 182 88 0 1 182 3 184 8.19e-57 197
MS.gene84147.t1 MTR_4g119930 54.645 183 80 1 4 186 6 185 1.75e-56 183
MS.gene84147.t1 MTR_4g119930 54.545 154 67 1 4 157 6 156 2.86e-46 155
MS.gene84147.t1 MTR_7g108340 44.693 179 99 0 4 182 3 181 9.49e-45 163
MS.gene84147.t1 MTR_4g119930 56.204 137 60 0 50 186 1 137 1.65e-41 142
MS.gene84147.t1 MTR_3g115680 39.535 172 90 4 16 183 18 179 6.07e-29 110
MS.gene84147.t1 MTR_4g131905 46.535 101 42 4 45 145 57 145 1.10e-17 79.3
MS.gene84147.t1 MTR_7g021400 39.130 138 74 2 203 334 5 138 2.30e-17 78.6
MS.gene84147.t1 MTR_5g022730 36.806 144 69 3 203 334 4 137 3.61e-17 78.2
MS.gene84147.t1 MTR_7g094150 39.130 138 74 2 203 334 5 138 3.69e-17 78.2
MS.gene84147.t1 MTR_4g033455 33.557 149 83 3 203 339 9 153 8.50e-17 77.0
MS.gene84147.t1 MTR_5g022710 36.111 144 70 3 203 334 4 137 8.62e-17 77.0
MS.gene84147.t1 MTR_4g032510 36.496 137 74 2 203 334 6 134 2.19e-16 75.9
MS.gene84147.t1 MTR_5g085030 34.783 138 81 2 203 334 4 138 3.39e-16 75.5
MS.gene84147.t1 MTR_4g032460 35.606 132 82 1 203 334 4 132 6.90e-16 74.3
MS.gene84147.t1 MTR_7g094170 37.681 138 76 2 203 334 5 138 8.58e-16 74.3
MS.gene84147.t1 MTR_4g032500 40.000 130 67 3 204 329 7 129 9.46e-16 73.9
MS.gene84147.t1 MTR_4g033460 33.333 138 82 2 203 334 9 142 2.93e-15 74.7
MS.gene84147.t1 MTR_4g032400 35.338 133 77 2 203 329 11 140 6.76e-15 72.0
MS.gene84147.t1 MTR_3g110048 35.000 140 79 2 203 334 5 140 1.27e-14 71.2
MS.gene84147.t1 MTR_7g094280 35.616 146 71 4 204 336 7 142 3.69e-14 69.7
MS.gene84147.t1 MTR_7g094120 35.211 142 76 4 203 334 6 141 4.87e-14 69.3
MS.gene84147.t1 MTR_8g056060 35.862 145 70 3 203 334 5 139 6.45e-14 68.9
MS.gene84147.t1 MTR_7g021380 36.232 138 78 2 203 334 5 138 2.50e-13 67.4
MS.gene84147.t1 MTR_8g468480 33.333 135 77 3 203 329 4 133 2.94e-13 67.4
MS.gene84147.t1 MTR_4g032450 36.522 115 63 2 200 308 20 130 3.69e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84147.t1 AT4G02570 50.838 179 88 0 4 182 3 181 1.28e-53 188
MS.gene84147.t1 AT4G02570 50.838 179 88 0 4 182 3 181 1.28e-53 188
MS.gene84147.t1 AT4G02570 50.838 179 88 0 4 182 3 181 1.28e-53 188
MS.gene84147.t1 AT4G02570 50.838 179 88 0 4 182 3 181 1.28e-53 188
MS.gene84147.t1 AT1G43140 43.258 178 101 0 1 178 9 186 7.60e-44 160
MS.gene84147.t1 AT1G59790 44.318 176 94 2 7 180 12 185 1.10e-41 149
MS.gene84147.t1 AT1G59790 44.318 176 94 2 7 180 12 185 1.24e-41 149
MS.gene84147.t1 AT1G02980 41.520 171 99 1 9 178 8 178 1.14e-36 140
MS.gene84147.t1 AT1G02980 41.520 171 99 1 9 178 8 178 1.14e-36 140
MS.gene84147.t1 AT1G59800 35.632 174 108 1 7 180 7 176 7.67e-29 112
MS.gene84147.t1 AT4G34210 33.824 136 82 2 203 334 3 134 1.32e-13 68.2
MS.gene84147.t1 AT1G75950 35.556 135 71 3 203 325 3 133 4.14e-13 67.0
MS.gene84147.t1 AT4G34470 33.088 136 83 2 203 334 3 134 2.30e-12 64.7
MS.gene84147.t1 AT2G03170 36.090 133 80 2 203 334 3 131 2.62e-12 64.3
MS.gene84147.t1 AT3G21850 35.294 136 81 3 203 334 3 135 2.88e-12 64.3
MS.gene84147.t1 AT3G21860 34.507 142 73 4 203 334 3 134 7.68e-11 60.5
MS.gene84147.t1 AT3G60020 31.655 139 85 3 202 334 1 135 9.61e-11 60.1

Find 76 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCATGGGATAAGAAATT+TGG 0.172220 8.2:-3122742 MS.gene84147:CDS
TTAATAGGTTCTGCCATCTT+TGG 0.264648 8.2:-3124513 MS.gene84147:intron
TGTACTTGTCGTATAGTTCT+AGG 0.281785 8.2:+3125071 None:intergenic
GTAATTGCAGGAAGAGAAAA+TGG 0.299795 8.2:-3123100 MS.gene84147:intron
ATCACTAACCAGATGGTAAA+AGG 0.309454 8.2:+3124334 None:intergenic
TTCAAGAATGTTGAGGAGTT+TGG 0.315163 8.2:+3125580 None:intergenic
TGTTCCTCAGGAGTGAAATT+AGG 0.316139 8.2:+3125545 None:intergenic
ATCTTCTCTTCTGCCCGTTT+CGG 0.316377 8.2:+3123543 None:intergenic
AGAGAAGGAAGTTTATATCT+TGG 0.318136 8.2:+3124377 None:intergenic
GGTTGTGTTTGAAGTTGATT+TGG 0.328338 8.2:-3123025 MS.gene84147:CDS
TGAGAGAACTGTTTAGAAAA+TGG 0.332902 8.2:-3124466 MS.gene84147:CDS
TGAAGATCATCCAGAGTTAT+AGG 0.337687 8.2:+3122805 None:intergenic
ATATTCTTACGTACGTATAT+AGG 0.352246 8.2:+3125516 None:intergenic
CTTCTTGAGCGGCATAGAAT+TGG 0.356922 8.2:+3122686 None:intergenic
CATAGTCATTAGGAGGCCTT+TGG 0.367248 8.2:+3125095 None:intergenic
TAATAGGTTCTGCCATCTTT+GGG 0.372638 8.2:-3124512 MS.gene84147:intron
AGAGATGAATAAAGAAATAC+TGG 0.372946 8.2:-3124197 MS.gene84147:CDS
ACTTTCTTTGATAAAACATC+TGG 0.378071 8.2:+3123069 None:intergenic
AAACTCCTCAACATTCTTGA+AGG 0.392226 8.2:-3125578 MS.gene84147:CDS
AACACTTGCAATTAAAGCAT+TGG 0.403799 8.2:-3123514 MS.gene84147:CDS
CAAAGGCCTCCTAATGACTA+TGG 0.405765 8.2:-3125094 MS.gene84147:CDS
CTCAGGAGTGAAATTAGGTT+CGG 0.406007 8.2:+3125550 None:intergenic
GTTGTGTTTGAAGTTGATTT+GGG 0.419950 8.2:-3123024 MS.gene84147:CDS
GTTTGAAGTTGATTTGGGTT+TGG 0.429981 8.2:-3123019 MS.gene84147:CDS
ATAGTCATTAGGAGGCCTTT+GGG 0.431046 8.2:+3125096 None:intergenic
GATGATCTTCATACATATGC+AGG 0.437688 8.2:-3122793 MS.gene84147:CDS
AGTTCTAGGCCATAGTCATT+AGG 0.438107 8.2:+3125085 None:intergenic
TAAACAGTTCTCTCAACAAA+AGG 0.442419 8.2:+3124474 None:intergenic
GCCATCTTTGGGAGAAAAGA+AGG 0.451898 8.2:-3124501 MS.gene84147:CDS
TATCAACTTAGAAGAAGGAT+TGG 0.452292 8.2:-3125624 MS.gene84147:CDS
ATTCACTTCATGAACAGAAA+TGG 0.455202 8.2:+3122930 None:intergenic
AGAGACTTGGGAACCTTGCA+TGG 0.478969 8.2:-3122756 MS.gene84147:CDS
TGATGTTGACCCTATAACTC+TGG 0.483537 8.2:-3122815 MS.gene84147:CDS
GAATTTATCAACTTAGAAGA+AGG 0.483555 8.2:-3125629 MS.gene84147:CDS
TCAGGAGTGAAATTAGGTTC+GGG 0.496733 8.2:+3125551 None:intergenic
TAGAATTGGACGAGTTCCTC+TGG 0.497801 8.2:+3122700 None:intergenic
GTATCCAGATTGATCCGAAA+CGG 0.501653 8.2:-3123557 MS.gene84147:intron
TCAACATCACCAATCGGAAT+CGG 0.502713 8.2:+3122955 None:intergenic
TATCCAGATTGATCCGAAAC+GGG 0.511511 8.2:-3123556 MS.gene84147:intron
ACTGGATGCTATAGTTGCTA+TGG 0.514027 8.2:-3124179 MS.gene84147:intron
GAAAGTCAACTTGGTAAGCT+CGG 0.520925 8.2:-3123052 MS.gene84147:CDS
CAAATTTCTTATCCCATGCA+AGG 0.522321 8.2:+3122743 None:intergenic
TCAACTTGGTAAGCTCGGAC+AGG 0.523618 8.2:-3123047 MS.gene84147:CDS
TATAGGTTAATGTGTTCCTC+AGG 0.531967 8.2:+3125533 None:intergenic
AGTATGTTGATCTCAAGGAC+TGG 0.535333 8.2:-3122852 MS.gene84147:CDS
GAAGATCATCCAGAGTTATA+GGG 0.538617 8.2:+3122806 None:intergenic
GAGACCATTCCGATTCCGAT+TGG 0.541494 8.2:-3122964 MS.gene84147:CDS
ATGGTATCAACATCACCAAT+CGG 0.541955 8.2:+3122949 None:intergenic
TTTATCAAAGAAAGTCAACT+TGG 0.543241 8.2:-3123061 MS.gene84147:CDS
AAGCTGGTTTCTTCAAGAGA+AGG 0.550231 8.2:+3124362 None:intergenic
GTATGTTGATCTCAAGGACT+GGG 0.555633 8.2:-3122851 MS.gene84147:CDS
ACAGAAGTATGTTGATCTCA+AGG 0.556799 8.2:-3122857 MS.gene84147:CDS
ATGGTAAAAGGATATGAAGC+TGG 0.562807 8.2:+3124346 None:intergenic
ATCACCAATCGGAATCGGAA+TGG 0.586243 8.2:+3122960 None:intergenic
GAAGTTTGAGTCTTCTTGAG+CGG 0.586794 8.2:+3122675 None:intergenic
CAGATTACATAGTTATGACC+AGG 0.588365 8.2:-3124442 MS.gene84147:CDS
AGAACTATACGACAAGTACA+AGG 0.591577 8.2:-3125068 MS.gene84147:CDS
TACTTGAAAATCGAGAGACT+TGG 0.593142 8.2:-3122769 MS.gene84147:CDS
CAACTTGGTAAGCTCGGACA+GGG 0.603846 8.2:-3123046 MS.gene84147:CDS
CTCAAGAATACACAAGGCAA+AGG 0.606376 8.2:-3123466 MS.gene84147:intron
ACTTGAAAATCGAGAGACTT+GGG 0.609483 8.2:-3122768 MS.gene84147:CDS
CTGTCAAGGTATGACGATGA+GGG 0.611547 8.2:-3125651 None:intergenic
GTCATTAGGAGGCCTTTGGG+TGG 0.615112 8.2:+3125099 None:intergenic
GAATAGCAAAATGTTGAGCA+TGG 0.627648 8.2:-3122911 MS.gene84147:CDS
CGATTGCTCAAGAATACACA+AGG 0.630865 8.2:-3123472 MS.gene84147:CDS
TCTGTCAAGGTATGACGATG+AGG 0.635757 8.2:-3125652 None:intergenic
GAGACTTGGGAACCTTGCAT+GGG 0.636934 8.2:-3122755 MS.gene84147:CDS
GTAAACCTTCAAGAATGTTG+AGG 0.636957 8.2:+3125573 None:intergenic
TCTAGGCCATAGTCATTAGG+AGG 0.637348 8.2:+3125088 None:intergenic
TCTTTGGGAGAAAAGAAGGA+TGG 0.647182 8.2:-3124497 MS.gene84147:CDS
GGATTGGAGACTATGCAGAA+AGG 0.648663 8.2:-3125608 MS.gene84147:CDS
AAATCTAAAGACTCTTCTCG+TGG 0.650288 8.2:+3122635 None:intergenic
ATGATCTTCATACATATGCA+GGG 0.656987 8.2:-3122792 MS.gene84147:CDS
CGAACCTAATTTCACTCCTG+AGG 0.662065 8.2:-3125549 MS.gene84147:CDS
TCTACAATATGTCCACCCAA+AGG 0.683184 8.2:-3125111 MS.gene84147:CDS
GATAAAAGACATGACACCAG+AGG 0.694992 8.2:-3122716 MS.gene84147:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATAATTGTATTAGAAA+CGG - chr8.2:3124222-3124241 MS.gene84147:intron 15.0%
!! AATACATCTTTCTTATTAAT+AGG - chr8.2:3123752-3123771 MS.gene84147:intron 15.0%
!! ATAACAAAGATTAAAACATA+AGG + chr8.2:3124656-3124675 None:intergenic 15.0%
!! CAAAAAAAAACTACATAATT+AGG + chr8.2:3124525-3124544 None:intergenic 15.0%
!!! AATTCTTTTGAAATATGTTT+TGG - chr8.2:3124899-3124918 MS.gene84147:intron 15.0%
!! AAAGAAATATTAGGATTCTT+TGG - chr8.2:3125055-3125074 MS.gene84147:CDS 20.0%
!! AAGTATCAAACATATAGAAA+TGG + chr8.2:3124140-3124159 None:intergenic 20.0%
!! AAGTATTTAGCGTTATTATT+GGG - chr8.2:3122905-3122924 MS.gene84147:CDS 20.0%
!! AGAAACTTTAATAATGTATC+TGG - chr8.2:3122842-3122861 MS.gene84147:CDS 20.0%
!! AGTATCAAACATATAGAAAT+GGG + chr8.2:3124139-3124158 None:intergenic 20.0%
!! AGTATTAGAAATTAGACTTA+AGG + chr8.2:3123622-3123641 None:intergenic 20.0%
!! ATCCTAATATTTCTTTATAG+TGG + chr8.2:3125051-3125070 None:intergenic 20.0%
!! GAAACTTTAATAATGTATCT+GGG - chr8.2:3122843-3122862 MS.gene84147:CDS 20.0%
!! GATTTATATATGACTATTTC+AGG - chr8.2:3125083-3125102 MS.gene84147:CDS 20.0%
!! TAAAAACAACGTAAACTAAA+AGG - chr8.2:3124288-3124307 MS.gene84147:intron 20.0%
!! TAAGTATTTAGCGTTATTAT+TGG - chr8.2:3122904-3122923 MS.gene84147:CDS 20.0%
!! TACCACTATAAAGAAATATT+AGG - chr8.2:3125046-3125065 MS.gene84147:CDS 20.0%
!! TATAAGTTCCAATTATACAA+CGG + chr8.2:3124365-3124384 None:intergenic 20.0%
!! TTATTATTGGGATAAAGATA+AGG - chr8.2:3122917-3122936 MS.gene84147:CDS 20.0%
!!! TGCATTACAATTTTTAGAAA+AGG + chr8.2:3123143-3123162 None:intergenic 20.0%
!!! TTAGTCTAGTTTTTTTAACT+TGG + chr8.2:3125150-3125169 None:intergenic 20.0%
!!! TTTTCTAAAAATTGTAATGC+AGG - chr8.2:3123142-3123161 MS.gene84147:intron 20.0%
! AAACTAGACTAAGATATTAG+TGG - chr8.2:3125158-3125177 MS.gene84147:intron 25.0%
! AAATGAATTAACACAACACA+AGG + chr8.2:3123118-3123137 None:intergenic 25.0%
! ACTTATGTCAAAAAGATTTG+AGG - chr8.2:3125285-3125304 MS.gene84147:intron 25.0%
! ACTTTCTTTGATAAAACATC+TGG + chr8.2:3125214-3125233 None:intergenic 25.0%
! AGAGATGAATAAAGAAATAC+TGG - chr8.2:3124083-3124102 MS.gene84147:intron 25.0%
! AGGTATTACTTACATTAACA+TGG - chr8.2:3123721-3123740 MS.gene84147:intron 25.0%
! ATAAGTTCCAATTATACAAC+GGG + chr8.2:3124364-3124383 None:intergenic 25.0%
! ATAATTGGAACTTATACAGT+GGG - chr8.2:3124369-3124388 MS.gene84147:CDS 25.0%
! ATATAAAACTGTATGGGAAA+GGG + chr8.2:3123487-3123506 None:intergenic 25.0%
! ATATTCTTACGTACGTATAT+AGG + chr8.2:3122767-3122786 None:intergenic 25.0%
! ATTAGAAATTAGACTTAAGG+AGG + chr8.2:3123619-3123638 None:intergenic 25.0%
! GAATTTATCAACTTAGAAGA+AGG - chr8.2:3122651-3122670 MS.gene84147:CDS 25.0%
! GGAATCATTGCTTAATAATT+GGG + chr8.2:3125129-3125148 None:intergenic 25.0%
! TAAAATTTCCATATCTAGCA+TGG - chr8.2:3124876-3124895 MS.gene84147:intron 25.0%
! TATAATTGGAACTTATACAG+TGG - chr8.2:3124368-3124387 MS.gene84147:CDS 25.0%
! TGCTATATTCAATCCAAATT+AGG - chr8.2:3124630-3124649 MS.gene84147:intron 25.0%
! TGGAATCATTGCTTAATAAT+TGG + chr8.2:3125130-3125149 None:intergenic 25.0%
! TTAAAACATAAGGCCTAATT+TGG + chr8.2:3124646-3124665 None:intergenic 25.0%
! TTACTTTCTCAAATAATCAC+CGG + chr8.2:3123343-3123362 None:intergenic 25.0%
! TTGACCATATAAAACTGTAT+GGG + chr8.2:3123493-3123512 None:intergenic 25.0%
! TTTAATCGTCAACTATCTAA+TGG - chr8.2:3124428-3124447 MS.gene84147:CDS 25.0%
! TTTATCAAAGAAAGTCAACT+TGG - chr8.2:3125219-3125238 MS.gene84147:intron 25.0%
! TTTGACCATATAAAACTGTA+TGG + chr8.2:3123494-3123513 None:intergenic 25.0%
!! GATAGCAAAATAATTTTGAG+AGG + chr8.2:3123866-3123885 None:intergenic 25.0%
!!! CTTTTGAAATATGTTTTGGT+CGG - chr8.2:3124903-3124922 MS.gene84147:intron 25.0%
!!! TGCTTCATTTTAATTATCTC+AGG - chr8.2:3124053-3124072 MS.gene84147:intron 25.0%
AAAGAATTCCATGCTAGATA+TGG + chr8.2:3124887-3124906 None:intergenic 30.0%
AACACTTGCAATTAAAGCAT+TGG - chr8.2:3124766-3124785 MS.gene84147:intron 30.0%
AAGATATTAGTGGTAATTGC+AGG - chr8.2:3125168-3125187 MS.gene84147:intron 30.0%
AGAGAAGGAAGTTTATATCT+TGG + chr8.2:3123906-3123925 None:intergenic 30.0%
ATATGAATTGTGCAGTTGAA+TGG - chr8.2:3124581-3124600 MS.gene84147:intron 30.0%
ATGATCTTCATACATATGCA+GGG - chr8.2:3125488-3125507 MS.gene84147:intron 30.0%
ATTCACTTCATGAACAGAAA+TGG + chr8.2:3125353-3125372 None:intergenic 30.0%
CATATAAAACTGTATGGGAA+AGG + chr8.2:3123488-3123507 None:intergenic 30.0%
CATGTTTAGCAAAATCCAAA+TGG + chr8.2:3123679-3123698 None:intergenic 30.0%
CTGGGAATAGAGTTTATTAA+AGG - chr8.2:3123034-3123053 MS.gene84147:CDS 30.0%
CTTCAAAGACCATTATATAC+TGG + chr8.2:3123584-3123603 None:intergenic 30.0%
GTAAGTAATACCTACACTAT+CGG + chr8.2:3123714-3123733 None:intergenic 30.0%
TAAACAGTTCTCTCAACAAA+AGG + chr8.2:3123809-3123828 None:intergenic 30.0%
TACACTTGCATTTGAGAAAA+AGG - chr8.2:3124454-3124473 MS.gene84147:CDS 30.0%
TATCAACTTAGAAGAAGGAT+TGG - chr8.2:3122656-3122675 MS.gene84147:CDS 30.0%
TCGTTAGGAAAATTGTATTC+AGG - chr8.2:3124935-3124954 MS.gene84147:intron 30.0%
TGAGAGAACTGTTTAGAAAA+TGG - chr8.2:3123814-3123833 MS.gene84147:intron 30.0%
TTATACAGTGGGAACTTATT+TGG - chr8.2:3124380-3124399 MS.gene84147:CDS 30.0%
TTATGTATGAGACTCTAGTT+TGG + chr8.2:3124984-3125003 None:intergenic 30.0%
! AATAATGTATCTGGGATTAG+TGG - chr8.2:3122851-3122870 MS.gene84147:CDS 30.0%
! ATGTGCTGTACACTTTATTT+AGG + chr8.2:3124268-3124287 None:intergenic 30.0%
! CATTTGGATTTTGCTAAACA+TGG - chr8.2:3123677-3123696 MS.gene84147:intron 30.0%
! GTTGTGTTTGAAGTTGATTT+GGG - chr8.2:3125256-3125275 MS.gene84147:intron 30.0%
! TAGTCTTGATAAACTCTTTC+AGG + chr8.2:3122943-3122962 None:intergenic 30.0%
! TCCTTCTCAAGATTTAAAAC+TGG + chr8.2:3125022-3125041 None:intergenic 30.0%
!! ACAGTTTTATATGGTCAAAG+TGG - chr8.2:3123495-3123514 MS.gene84147:CDS 30.0%
!! CAGTTTTATATGGTCAAAGT+GGG - chr8.2:3123496-3123515 MS.gene84147:CDS 30.0%
!! CTTTCCCATACAGTTTTATA+TGG - chr8.2:3123486-3123505 MS.gene84147:CDS 30.0%
!! TATTTTTACCATCCTTGGTA+GGG + chr8.2:3124335-3124354 None:intergenic 30.0%
!!! ACCAGTTTTAAATCTTGAGA+AGG - chr8.2:3125018-3125037 MS.gene84147:intron 30.0%
AAACTCCTCAACATTCTTGA+AGG - chr8.2:3122702-3122721 MS.gene84147:CDS 35.0%
AAGACCATTATATACTGGAC+AGG + chr8.2:3123579-3123598 None:intergenic 35.0%
AATTAGGTCAAGACACGTAA+AGG + chr8.2:3124509-3124528 None:intergenic 35.0%
ACTTGAAAATCGAGAGACTT+GGG - chr8.2:3125512-3125531 MS.gene84147:intron 35.0%
AGAACTATACGACAAGTACA+AGG - chr8.2:3123212-3123231 MS.gene84147:intron 35.0%
AGAGTTCATAAAGGGGAAAA+GGG + chr8.2:3124028-3124047 None:intergenic 35.0%
AGCAAACTCAGAGTTCATAA+AGG + chr8.2:3124037-3124056 None:intergenic 35.0%
ATCACTAACCAGATGGTAAA+AGG + chr8.2:3123949-3123968 None:intergenic 35.0%
ATGGTAAAAGGATATGAAGC+TGG + chr8.2:3123937-3123956 None:intergenic 35.0%
ATGGTATCAACATCACCAAT+CGG + chr8.2:3125334-3125353 None:intergenic 35.0%
CAAACTCAGAGTTCATAAAG+GGG + chr8.2:3124035-3124054 None:intergenic 35.0%
CAAATTTCTTATCCCATGCA+AGG + chr8.2:3125540-3125559 None:intergenic 35.0%
CAGATTACATAGTTATGACC+AGG - chr8.2:3123838-3123857 MS.gene84147:intron 35.0%
CTAACCCATCTTTACAAAAC+CGG + chr8.2:3122978-3122997 None:intergenic 35.0%
CTTGCATGGGATAAGAAATT+TGG - chr8.2:3125538-3125557 MS.gene84147:CDS 35.0%
GAAGACAAAAGAGCTATTAC+AGG + chr8.2:3124695-3124714 None:intergenic 35.0%
GAAGATCATCCAGAGTTATA+GGG + chr8.2:3125477-3125496 None:intergenic 35.0%
GAATAGCAAAATGTTGAGCA+TGG - chr8.2:3125369-3125388 MS.gene84147:intron 35.0%
GAATATCATCACTAACCAGA+TGG + chr8.2:3123956-3123975 None:intergenic 35.0%
GATGATCTTCATACATATGC+AGG - chr8.2:3125487-3125506 MS.gene84147:intron 35.0%
GATTAAAGTCAAGCATCTCT+TGG + chr8.2:3124415-3124434 None:intergenic 35.0%
GCAAACTCAGAGTTCATAAA+GGG + chr8.2:3124036-3124055 None:intergenic 35.0%
GTAAACCTTCAAGAATGTTG+AGG + chr8.2:3122710-3122729 None:intergenic 35.0%
GTAATTGCAGGAAGAGAAAA+TGG - chr8.2:3125180-3125199 MS.gene84147:intron 35.0%
TAATAGGTTCTGCCATCTTT+GGG - chr8.2:3123768-3123787 MS.gene84147:intron 35.0%
TACTTGAAAATCGAGAGACT+TGG - chr8.2:3125511-3125530 MS.gene84147:intron 35.0%
TATAGGTTAATGTGTTCCTC+AGG + chr8.2:3122750-3122769 None:intergenic 35.0%
TGAAGATCATCCAGAGTTAT+AGG + chr8.2:3125478-3125497 None:intergenic 35.0%
TGATATTATGTAGCACACAC+CGG - chr8.2:3123321-3123340 MS.gene84147:intron 35.0%
TGTACTTGTCGTATAGTTCT+AGG + chr8.2:3123212-3123231 None:intergenic 35.0%
TGTGAGTAAGCAAACAACTA+TGG + chr8.2:3123648-3123667 None:intergenic 35.0%
TTAATAGGTTCTGCCATCTT+TGG - chr8.2:3123767-3123786 MS.gene84147:intron 35.0%
TTCAAGAATGTTGAGGAGTT+TGG + chr8.2:3122703-3122722 None:intergenic 35.0%
! ACAGAAGTATGTTGATCTCA+AGG - chr8.2:3125423-3125442 MS.gene84147:intron 35.0%
! CTTCATATCCTTTTACCATC+TGG - chr8.2:3123938-3123957 MS.gene84147:intron 35.0%
! GCTCTTTTGTCTTCATTTCT+TGG - chr8.2:3124701-3124720 MS.gene84147:intron 35.0%
! GCTGTACACTTTATTTAGGT+TGG + chr8.2:3124264-3124283 None:intergenic 35.0%
! GGCTGATTCAACTAGTTTAA+CGG - chr8.2:3123055-3123074 MS.gene84147:CDS 35.0%
! GGTTGTGTTTGAAGTTGATT+TGG - chr8.2:3125255-3125274 MS.gene84147:intron 35.0%
! TGATTCAACTAGTTTAACGG+TGG - chr8.2:3123058-3123077 MS.gene84147:CDS 35.0%
! TGGATTTTGCTAAACATGGA+AGG - chr8.2:3123681-3123700 MS.gene84147:intron 35.0%
!! ACAGGTATTTTTACCATCCT+TGG + chr8.2:3124340-3124359 None:intergenic 35.0%
!! GTATTTTTACCATCCTTGGT+AGG + chr8.2:3124336-3124355 None:intergenic 35.0%
!! GTTTGAAGTTGATTTGGGTT+TGG - chr8.2:3125261-3125280 MS.gene84147:intron 35.0%
AAGACTAACAATCTTCACGC+CGG - chr8.2:3122956-3122975 MS.gene84147:CDS 40.0%
ACCTGTACCCGTTGTATAAT+TGG - chr8.2:3124354-3124373 MS.gene84147:CDS 40.0%
ACGCTGTATTTGCTCAATCT+TGG - chr8.2:3123088-3123107 MS.gene84147:CDS 40.0%
ACTCACATGCATCAACCATT+TGG - chr8.2:3123661-3123680 MS.gene84147:intron 40.0%
ACTGCCTGTCCAGTATATAA+TGG - chr8.2:3123572-3123591 MS.gene84147:intron 40.0%
ACTGGATGCTATAGTTGCTA+TGG - chr8.2:3124101-3124120 MS.gene84147:intron 40.0%
ACTTCAGATTTAGGCATGTC+TGG + chr8.2:3123404-3123423 None:intergenic 40.0%
AGTATGTTGATCTCAAGGAC+TGG - chr8.2:3125428-3125447 MS.gene84147:intron 40.0%
ATAGTCATTAGGAGGCCTTT+GGG + chr8.2:3123187-3123206 None:intergenic 40.0%
CAGAGTTCATAAAGGGGAAA+AGG + chr8.2:3124029-3124048 None:intergenic 40.0%
CGATTGCTCAAGAATACACA+AGG - chr8.2:3124808-3124827 MS.gene84147:intron 40.0%
CTCAAGAATACACAAGGCAA+AGG - chr8.2:3124814-3124833 MS.gene84147:intron 40.0%
CTCAGGAGTGAAATTAGGTT+CGG + chr8.2:3122733-3122752 None:intergenic 40.0%
GAAAGTCAACTTGGTAAGCT+CGG - chr8.2:3125228-3125247 MS.gene84147:intron 40.0%
GAAGTTTGAGTCTTCTTGAG+CGG + chr8.2:3125608-3125627 None:intergenic 40.0%
GATAAAAGACATGACACCAG+AGG - chr8.2:3125564-3125583 MS.gene84147:CDS 40.0%
GTATCCAGATTGATCCGAAA+CGG - chr8.2:3124723-3124742 MS.gene84147:intron 40.0%
GTATGTTGATCTCAAGGACT+GGG - chr8.2:3125429-3125448 MS.gene84147:intron 40.0%
GTATTAGAAACGGAGTACAG+AGG - chr8.2:3124232-3124251 MS.gene84147:intron 40.0%
TATCCAGATTGATCCGAAAC+GGG - chr8.2:3124724-3124743 MS.gene84147:intron 40.0%
TCAACATCACCAATCGGAAT+CGG + chr8.2:3125328-3125347 None:intergenic 40.0%
TCAGGAGTGAAATTAGGTTC+GGG + chr8.2:3122732-3122751 None:intergenic 40.0%
TCCAATTATACAACGGGTAC+AGG + chr8.2:3124358-3124377 None:intergenic 40.0%
TCTACAATATGTCCACCCAA+AGG - chr8.2:3123169-3123188 MS.gene84147:intron 40.0%
TGAATTGTGCAGTTGAATGG+TGG - chr8.2:3124584-3124603 MS.gene84147:intron 40.0%
TGATGTTGACCCTATAACTC+TGG - chr8.2:3125465-3125484 MS.gene84147:intron 40.0%
TGTTCCTCAGGAGTGAAATT+AGG + chr8.2:3122738-3122757 None:intergenic 40.0%
! AAGCTGGTTTCTTCAAGAGA+AGG + chr8.2:3123921-3123940 None:intergenic 40.0%
! AATTTTCCTAACGACGCACA+AGG + chr8.2:3124929-3124948 None:intergenic 40.0%
! TCCTTCTTTTCTCCCAAAGA+TGG + chr8.2:3123783-3123802 None:intergenic 40.0%
! TCTTTGGGAGAAAAGAAGGA+TGG - chr8.2:3123783-3123802 MS.gene84147:intron 40.0%
!! AGCACTGACACTTCAGATTT+AGG + chr8.2:3123413-3123432 None:intergenic 40.0%
!! AGTTCTAGGCCATAGTCATT+AGG + chr8.2:3123198-3123217 None:intergenic 40.0%
!!! AAATAATTTTGAGAGGCGCC+TGG + chr8.2:3123859-3123878 None:intergenic 40.0%
AGAGTTAGACCCAATAGCGT+TGG - chr8.2:3122996-3123015 MS.gene84147:CDS 45.0%
AGGTCAAGAACCGATAGTGT+AGG - chr8.2:3123701-3123720 MS.gene84147:intron 45.0%
ATCACCAATCGGAATCGGAA+TGG + chr8.2:3125323-3125342 None:intergenic 45.0%
ATCTTCTCTTCTGCCCGTTT+CGG + chr8.2:3124740-3124759 None:intergenic 45.0%
CAAAGGCCTCCTAATGACTA+TGG - chr8.2:3123186-3123205 MS.gene84147:intron 45.0%
CATAGTCATTAGGAGGCCTT+TGG + chr8.2:3123188-3123207 None:intergenic 45.0%
CGAACCTAATTTCACTCCTG+AGG - chr8.2:3122731-3122750 MS.gene84147:CDS 45.0%
CTTCTTGAGCGGCATAGAAT+TGG + chr8.2:3125597-3125616 None:intergenic 45.0%
GAGTTAGACCCAATAGCGTT+GGG - chr8.2:3122997-3123016 MS.gene84147:CDS 45.0%
GGATTGGAGACTATGCAGAA+AGG - chr8.2:3122672-3122691 MS.gene84147:CDS 45.0%
TAGAATTGGACGAGTTCCTC+TGG + chr8.2:3125583-3125602 None:intergenic 45.0%
TCAGATTTAGGCATGTCTGG+TGG + chr8.2:3123401-3123420 None:intergenic 45.0%
TCTAGGCCATAGTCATTAGG+AGG + chr8.2:3123195-3123214 None:intergenic 45.0%
! GCCATCTTTGGGAGAAAAGA+AGG - chr8.2:3123779-3123798 MS.gene84147:intron 45.0%
!!! CACGCCGGTTTTGTAAAGAT+GGG - chr8.2:3122971-3122990 MS.gene84147:CDS 45.0%
!!! TCACGCCGGTTTTGTAAAGA+TGG - chr8.2:3122970-3122989 MS.gene84147:CDS 45.0%
AGAGACTTGGGAACCTTGCA+TGG - chr8.2:3125524-3125543 MS.gene84147:intron 50.0%
CAACTTGGTAAGCTCGGACA+GGG - chr8.2:3125234-3125253 MS.gene84147:intron 50.0%
GAGACCATTCCGATTCCGAT+TGG - chr8.2:3125316-3125335 MS.gene84147:intron 50.0%
GAGACTTGGGAACCTTGCAT+GGG - chr8.2:3125525-3125544 MS.gene84147:intron 50.0%
GATTTAGGCATGTCTGGTGG+CGG + chr8.2:3123398-3123417 None:intergenic 50.0%
TACCATCCTTGGTAGGGTGT+CGG + chr8.2:3124329-3124348 None:intergenic 50.0%
TCAACTTGGTAAGCTCGGAC+AGG - chr8.2:3125233-3125252 MS.gene84147:intron 50.0%
! GTATCTGGGATTAGTGGCTG+TGG - chr8.2:3122857-3122876 MS.gene84147:CDS 50.0%
CTGCCCGTTTCGGATCAATC+TGG + chr8.2:3124730-3124749 None:intergenic 55.0%
GTCATTAGGAGGCCTTTGGG+TGG + chr8.2:3123184-3123203 None:intergenic 55.0%
!! CTTGGTAGGGTGTCGGTCAT+CGG + chr8.2:3124322-3124341 None:intergenic 55.0%
CGATGACCGACACCCTACCA+AGG - chr8.2:3124320-3124339 MS.gene84147:intron 60.0%
CTCCCACGCCCAACGCTATT+GGG + chr8.2:3123008-3123027 None:intergenic 60.0%
GACCGACACCCTACCAAGGA+TGG - chr8.2:3124324-3124343 MS.gene84147:intron 60.0%
TCTCCCACGCCCAACGCTAT+TGG + chr8.2:3123009-3123028 None:intergenic 60.0%
! AGACCCAATAGCGTTGGGCG+TGG - chr8.2:3123002-3123021 MS.gene84147:CDS 60.0%
! GACCCAATAGCGTTGGGCGT+GGG - chr8.2:3123003-3123022 MS.gene84147:CDS 60.0%
! TGGGCGTGGGAGAGTGTACT+GGG - chr8.2:3123016-3123035 MS.gene84147:CDS 60.0%
! TTGGGCGTGGGAGAGTGTAC+TGG - chr8.2:3123015-3123034 MS.gene84147:CDS 60.0%
! GGTCGGCCTTGTGCGTCGTT+AGG - chr8.2:3124920-3124939 MS.gene84147:intron 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 3122639 3125663 3122639 ID=MS.gene84147
chr8.2 mRNA 3122639 3125663 3122639 ID=MS.gene84147.t1;Parent=MS.gene84147
chr8.2 exon 3125530 3125663 3125530 ID=MS.gene84147.t1.exon1;Parent=MS.gene84147.t1
chr8.2 CDS 3125530 3125663 3125530 ID=cds.MS.gene84147.t1;Parent=MS.gene84147.t1
chr8.2 exon 3125039 3125138 3125039 ID=MS.gene84147.t1.exon2;Parent=MS.gene84147.t1
chr8.2 CDS 3125039 3125138 3125039 ID=cds.MS.gene84147.t1;Parent=MS.gene84147.t1
chr8.2 exon 3124343 3124528 3124343 ID=MS.gene84147.t1.exon3;Parent=MS.gene84147.t1
chr8.2 CDS 3124343 3124528 3124343 ID=cds.MS.gene84147.t1;Parent=MS.gene84147.t1
chr8.2 exon 3124180 3124227 3124180 ID=MS.gene84147.t1.exon4;Parent=MS.gene84147.t1
chr8.2 CDS 3124180 3124227 3124180 ID=cds.MS.gene84147.t1;Parent=MS.gene84147.t1
chr8.2 exon 3123467 3123571 3123467 ID=MS.gene84147.t1.exon5;Parent=MS.gene84147.t1
chr8.2 CDS 3123467 3123571 3123467 ID=cds.MS.gene84147.t1;Parent=MS.gene84147.t1
chr8.2 exon 3122639 3123112 3122639 ID=MS.gene84147.t1.exon6;Parent=MS.gene84147.t1
chr8.2 CDS 3122639 3123112 3122639 ID=cds.MS.gene84147.t1;Parent=MS.gene84147.t1
Gene Sequence

>MS.gene84147

ATGACGATGAGGGAATTTATCAACTTAGAAGAAGGATTGGAGACTATGCAGAAAGGTATCACCAAACTCCTCAACATTCTTGAAGGTTTACCCGAACCTAATTTCACTCCTGAGGAACACATTAACCTATATACGTACGTAAGAATATATCATATCTTTTTCTCTTTTATTTGTATATGATATGATGATATTCTTTTCTGCTTAGAAACTTTAATAATGTATCTGGGATTAGTGGCTGTGGATTTTATGTTAGTTTTCATTATTTTAAGTATTTAGCGTTATTATTGGGATAAAGATAAGGCCTGAAAGAGTTTATCAAGACTAACAATCTTCACGCCGGTTTTGTAAAGATGGGTTAGAGTTAGACCCAATAGCGTTGGGCGTGGGAGAGTGTACTGGGAATAGAGTTTATTAAAGGCTGATTCAACTAGTTTAACGGTGGTCTCTTGACGCTGTATTTGCTCAATCTTGGCACTCCTTGTGTTGTGTTAATTCATTTTGCCTTTTCTAAAAATTGTAATGCAGGACTGTCTACAATATGTCCACCCAAAGGCCTCCTAATGACTATGGCCTAGAACTATACGACAAGTACAAGGAAACATGTGAAGAGTACATTTTATCAAAAGTGAGTAACACTCTCATTTCGCTATCATATTCATGAATCATAGTGTTTAACAAAACTTGATATTATGTAGCACACACCGGTGATTATTTGAGAAAGTAAATTTGATTAAATGCAATCAAATGTGTCAGTGTCCGCCACCAGACATGCCTAAATCTGAAGTGTCAGTGCTGCATATCTAACTTACATTGTGAATCTGAATCATTTGATATGCTATATATTTCCCTTTCCCATACAGTTTTATATGGTCAAAGTGGGTATCTAGAACTGTTTATGAATTGTGTATATACAAGTAAAGAAAATTCAAATCTACTGCCTGTCCAGTATATAATGGTCTTTGAAGAATATATTAATTCCTCCTTAAGTCTAATTTCTAATACTAAACCATAGTTGTTTGCTTACTCACATGCATCAACCATTTGGATTTTGCTAAACATGGAAGGTCAAGAACCGATAGTGTAGGTATTACTTACATTAACATGGTTAAAACTAATACATCTTTCTTATTAATAGGTTCTGCCATCTTTGGGAGAAAAGAAGGATGGCCTTTTGTTGAGAGAACTGTTTAGAAAATGGTCAGATTACATAGTTATGACCAGGCGCCTCTCAAAATTATTTTGCTATCTTGAACGACGCGACATTCCAAGATATAAACTTCCTTCTCTTGAAGAAACCAGCTTCATATCCTTTTACCATCTGGTTAGTGATGATATTCTTTAGAAATGTTGCAGCATTGATTTTCTAATAATATTTATTTTGCATTTCCCTTTTCCCCTTTATGAACTCTGAGTTTGCTTCATTTTAATTATCTCAGGTATATGAAGAGATGAATAAAGAAATACTGGATGCTATAGTTGCTATGGTATTCTCTAATTCCCATTTCTATATGTTTGATACTTCTAAATTTATTATGAACAAGTAACATATTTCTTAATTAGTTCATTTTTCTAAACAATTATATAAACATAATTGTATTAGAAACGGAGTACAGAGGAATACACCAACCTAAATAAAGTGTACAGCACATTAAAAACAACGTAAACTAAAAGGCACTTGAGCCGATGACCGACACCCTACCAAGGATGGTAAAAATACCTGTACCCGTTGTATAATTGGAACTTATACAGTGGGAACTTATTTGGATTGACAAACCAAGAGATGCTTGACTTTAATCGTCAACTATCTAATGGTGTTACACTTGCATTTGAGAAAAAGGTTTATATATATGTGAATTTCTTTAATGATCCTTTACGTGTCTTGACCTAATTATGTAGTTTTTTTTTGTATAAGAAAGAACTGTGTAGTTTTTTAAAAAATAAAATATGAATTGTGCAGTTGAATGGTGGTAATTTAATTATCTTTCTAATGCTGCTATATTCAATCCAAATTAGGCCTTATGTTTTAATCTTTGTTATTTTCATTTGATATTTGCCTGTAATAGCTCTTTTGTCTTCATTTCTTGGTATCCAGATTGATCCGAAACGGGCAGAAGAGAAGATTGATCAAACACTTGCAATTAAAGCATTGGATTTATACTTAGAGTTAAACGATTGCTCAAGAATACACAAGGCAAAGGTGATTTCAGTAAAACTTAGTTCTTATTTGTAGATAAATTTAAAATTTCCATATCTAGCATGGAATTCTTTTGAAATATGTTTTGGTCGGCCTTGTGCGTCGTTAGGAAAATTGTATTCAGGTCAAATCTGAACACAGTTTAAGACCAAACTAGAGTCTCATACATAAATAGTCAAATAGTTACCAGTTTTAAATCTTGAGAAGGAATCATACCACTATAAAGAAATATTAGGATTCTTTGGCTCAAGATTTATATATGACTATTTCAGGAATTTTATTATTTTTTGTATCCCAATTATTAAGCAATGATTCCAAGTTAAAAAAACTAGACTAAGATATTAGTGGTAATTGCAGGAAGAGAAAATGGATCGCAGTCCAGATGTTTTATCAAAGAAAGTCAACTTGGTAAGCTCGGACAGGGTTGTGTTTGAAGTTGATTTGGGTTTGGCACTTATGTCAAAAAGATTTGAGGACATTATTGAGACCATTCCGATTCCGATTGGTGATGTTGATACCATTTCTGTTCATGAAGTGAATAGCAAAATGTTGAGCATGGTCGTTGAATACTGCAAGAAGCACGACAAAAGACAGAAGTATGTTGATCTCAAGGACTGGGATGCTCAATTTGTTGATGTTGACCCTATAACTCTGGATGATCTTCATACATATGCAGGGTACTTGAAAATCGAGAGACTTGGGAACCTTGCATGGGATAAGAAATTTGGCTTGATAAAAGACATGACACCAGAGGAACTCGTCCAATTCTATGCCGCTCAAGAAGACTCAAACTTCAAGTCATTAGAAGAGAACCACGAGAAGAGTCTTTAG

Protein sequence

>MS.gene84147.t1

MTMREFINLEEGLETMQKGITKLLNILEGLPEPNFTPEEHINLYTTVYNMSTQRPPNDYGLELYDKYKETCEEYILSKVLPSLGEKKDGLLLRELFRKWSDYIVMTRRLSKLFCYLERRDIPRYKLPSLEETSFISFYHLVYEEMNKEILDAIVAMIDPKRAEEKIDQTLAIKALDLYLELNDCSRIHKAKEEKMDRSPDVLSKKVNLVSSDRVVFEVDLGLALMSKRFEDIIETIPIPIGDVDTISVHEVNSKMLSMVVEYCKKHDKRQKYVDLKDWDAQFVDVDPITLDDLHTYAGYLKIERLGNLAWDKKFGLIKDMTPEELVQFYAAQEDSNFKSLEENHEKSL