Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84147.t1 | AES92608.2 | 68.7 | 313 | 28 | 3 | 1 | 313 | 1 | 243 | 2.50E-103 | 385.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84147.t1 | Q5ZC88 | 51.7 | 178 | 86 | 0 | 4 | 181 | 6 | 183 | 3.1e-46 | 187.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84147.t1 | G7JI21 | 68.7 | 313 | 28 | 3 | 1 | 313 | 1 | 243 | 1.8e-103 | 385.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050303 | MS.gene84147 | 0.803634 | 3.17E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84147.t1 | MTR_4g119422 | 49.189 | 370 | 143 | 8 | 7 | 336 | 3 | 367 | 1.48e-99 | 299 |
MS.gene84147.t1 | MTR_4g131910 | 79.348 | 184 | 29 | 1 | 138 | 312 | 59 | 242 | 1.24e-92 | 276 |
MS.gene84147.t1 | MTR_4g131910 | 89.157 | 83 | 8 | 1 | 1 | 83 | 1 | 82 | 7.54e-45 | 154 |
MS.gene84147.t1 | MTR_4g119490 | 59.563 | 183 | 74 | 0 | 3 | 185 | 1 | 183 | 3.70e-63 | 200 |
MS.gene84147.t1 | MTR_4g119450 | 54.144 | 181 | 83 | 0 | 3 | 183 | 1 | 181 | 1.43e-57 | 186 |
MS.gene84147.t1 | MTR_4g119413 | 51.648 | 182 | 88 | 0 | 1 | 182 | 3 | 184 | 2.94e-57 | 196 |
MS.gene84147.t1 | MTR_2g437390 | 52.198 | 182 | 87 | 0 | 1 | 182 | 1 | 182 | 5.18e-57 | 197 |
MS.gene84147.t1 | MTR_4g119413 | 51.648 | 182 | 88 | 0 | 1 | 182 | 3 | 184 | 8.19e-57 | 197 |
MS.gene84147.t1 | MTR_4g119930 | 54.645 | 183 | 80 | 1 | 4 | 186 | 6 | 185 | 1.75e-56 | 183 |
MS.gene84147.t1 | MTR_4g119930 | 54.545 | 154 | 67 | 1 | 4 | 157 | 6 | 156 | 2.86e-46 | 155 |
MS.gene84147.t1 | MTR_7g108340 | 44.693 | 179 | 99 | 0 | 4 | 182 | 3 | 181 | 9.49e-45 | 163 |
MS.gene84147.t1 | MTR_4g119930 | 56.204 | 137 | 60 | 0 | 50 | 186 | 1 | 137 | 1.65e-41 | 142 |
MS.gene84147.t1 | MTR_3g115680 | 39.535 | 172 | 90 | 4 | 16 | 183 | 18 | 179 | 6.07e-29 | 110 |
MS.gene84147.t1 | MTR_4g131905 | 46.535 | 101 | 42 | 4 | 45 | 145 | 57 | 145 | 1.10e-17 | 79.3 |
MS.gene84147.t1 | MTR_7g021400 | 39.130 | 138 | 74 | 2 | 203 | 334 | 5 | 138 | 2.30e-17 | 78.6 |
MS.gene84147.t1 | MTR_5g022730 | 36.806 | 144 | 69 | 3 | 203 | 334 | 4 | 137 | 3.61e-17 | 78.2 |
MS.gene84147.t1 | MTR_7g094150 | 39.130 | 138 | 74 | 2 | 203 | 334 | 5 | 138 | 3.69e-17 | 78.2 |
MS.gene84147.t1 | MTR_4g033455 | 33.557 | 149 | 83 | 3 | 203 | 339 | 9 | 153 | 8.50e-17 | 77.0 |
MS.gene84147.t1 | MTR_5g022710 | 36.111 | 144 | 70 | 3 | 203 | 334 | 4 | 137 | 8.62e-17 | 77.0 |
MS.gene84147.t1 | MTR_4g032510 | 36.496 | 137 | 74 | 2 | 203 | 334 | 6 | 134 | 2.19e-16 | 75.9 |
MS.gene84147.t1 | MTR_5g085030 | 34.783 | 138 | 81 | 2 | 203 | 334 | 4 | 138 | 3.39e-16 | 75.5 |
MS.gene84147.t1 | MTR_4g032460 | 35.606 | 132 | 82 | 1 | 203 | 334 | 4 | 132 | 6.90e-16 | 74.3 |
MS.gene84147.t1 | MTR_7g094170 | 37.681 | 138 | 76 | 2 | 203 | 334 | 5 | 138 | 8.58e-16 | 74.3 |
MS.gene84147.t1 | MTR_4g032500 | 40.000 | 130 | 67 | 3 | 204 | 329 | 7 | 129 | 9.46e-16 | 73.9 |
MS.gene84147.t1 | MTR_4g033460 | 33.333 | 138 | 82 | 2 | 203 | 334 | 9 | 142 | 2.93e-15 | 74.7 |
MS.gene84147.t1 | MTR_4g032400 | 35.338 | 133 | 77 | 2 | 203 | 329 | 11 | 140 | 6.76e-15 | 72.0 |
MS.gene84147.t1 | MTR_3g110048 | 35.000 | 140 | 79 | 2 | 203 | 334 | 5 | 140 | 1.27e-14 | 71.2 |
MS.gene84147.t1 | MTR_7g094280 | 35.616 | 146 | 71 | 4 | 204 | 336 | 7 | 142 | 3.69e-14 | 69.7 |
MS.gene84147.t1 | MTR_7g094120 | 35.211 | 142 | 76 | 4 | 203 | 334 | 6 | 141 | 4.87e-14 | 69.3 |
MS.gene84147.t1 | MTR_8g056060 | 35.862 | 145 | 70 | 3 | 203 | 334 | 5 | 139 | 6.45e-14 | 68.9 |
MS.gene84147.t1 | MTR_7g021380 | 36.232 | 138 | 78 | 2 | 203 | 334 | 5 | 138 | 2.50e-13 | 67.4 |
MS.gene84147.t1 | MTR_8g468480 | 33.333 | 135 | 77 | 3 | 203 | 329 | 4 | 133 | 2.94e-13 | 67.4 |
MS.gene84147.t1 | MTR_4g032450 | 36.522 | 115 | 63 | 2 | 200 | 308 | 20 | 130 | 3.69e-12 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84147.t1 | AT4G02570 | 50.838 | 179 | 88 | 0 | 4 | 182 | 3 | 181 | 1.28e-53 | 188 |
MS.gene84147.t1 | AT4G02570 | 50.838 | 179 | 88 | 0 | 4 | 182 | 3 | 181 | 1.28e-53 | 188 |
MS.gene84147.t1 | AT4G02570 | 50.838 | 179 | 88 | 0 | 4 | 182 | 3 | 181 | 1.28e-53 | 188 |
MS.gene84147.t1 | AT4G02570 | 50.838 | 179 | 88 | 0 | 4 | 182 | 3 | 181 | 1.28e-53 | 188 |
MS.gene84147.t1 | AT1G43140 | 43.258 | 178 | 101 | 0 | 1 | 178 | 9 | 186 | 7.60e-44 | 160 |
MS.gene84147.t1 | AT1G59790 | 44.318 | 176 | 94 | 2 | 7 | 180 | 12 | 185 | 1.10e-41 | 149 |
MS.gene84147.t1 | AT1G59790 | 44.318 | 176 | 94 | 2 | 7 | 180 | 12 | 185 | 1.24e-41 | 149 |
MS.gene84147.t1 | AT1G02980 | 41.520 | 171 | 99 | 1 | 9 | 178 | 8 | 178 | 1.14e-36 | 140 |
MS.gene84147.t1 | AT1G02980 | 41.520 | 171 | 99 | 1 | 9 | 178 | 8 | 178 | 1.14e-36 | 140 |
MS.gene84147.t1 | AT1G59800 | 35.632 | 174 | 108 | 1 | 7 | 180 | 7 | 176 | 7.67e-29 | 112 |
MS.gene84147.t1 | AT4G34210 | 33.824 | 136 | 82 | 2 | 203 | 334 | 3 | 134 | 1.32e-13 | 68.2 |
MS.gene84147.t1 | AT1G75950 | 35.556 | 135 | 71 | 3 | 203 | 325 | 3 | 133 | 4.14e-13 | 67.0 |
MS.gene84147.t1 | AT4G34470 | 33.088 | 136 | 83 | 2 | 203 | 334 | 3 | 134 | 2.30e-12 | 64.7 |
MS.gene84147.t1 | AT2G03170 | 36.090 | 133 | 80 | 2 | 203 | 334 | 3 | 131 | 2.62e-12 | 64.3 |
MS.gene84147.t1 | AT3G21850 | 35.294 | 136 | 81 | 3 | 203 | 334 | 3 | 135 | 2.88e-12 | 64.3 |
MS.gene84147.t1 | AT3G21860 | 34.507 | 142 | 73 | 4 | 203 | 334 | 3 | 134 | 7.68e-11 | 60.5 |
MS.gene84147.t1 | AT3G60020 | 31.655 | 139 | 85 | 3 | 202 | 334 | 1 | 135 | 9.61e-11 | 60.1 |
Find 76 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGCATGGGATAAGAAATT+TGG | 0.172220 | 8.2:-3122742 | MS.gene84147:CDS |
TTAATAGGTTCTGCCATCTT+TGG | 0.264648 | 8.2:-3124513 | MS.gene84147:intron |
TGTACTTGTCGTATAGTTCT+AGG | 0.281785 | 8.2:+3125071 | None:intergenic |
GTAATTGCAGGAAGAGAAAA+TGG | 0.299795 | 8.2:-3123100 | MS.gene84147:intron |
ATCACTAACCAGATGGTAAA+AGG | 0.309454 | 8.2:+3124334 | None:intergenic |
TTCAAGAATGTTGAGGAGTT+TGG | 0.315163 | 8.2:+3125580 | None:intergenic |
TGTTCCTCAGGAGTGAAATT+AGG | 0.316139 | 8.2:+3125545 | None:intergenic |
ATCTTCTCTTCTGCCCGTTT+CGG | 0.316377 | 8.2:+3123543 | None:intergenic |
AGAGAAGGAAGTTTATATCT+TGG | 0.318136 | 8.2:+3124377 | None:intergenic |
GGTTGTGTTTGAAGTTGATT+TGG | 0.328338 | 8.2:-3123025 | MS.gene84147:CDS |
TGAGAGAACTGTTTAGAAAA+TGG | 0.332902 | 8.2:-3124466 | MS.gene84147:CDS |
TGAAGATCATCCAGAGTTAT+AGG | 0.337687 | 8.2:+3122805 | None:intergenic |
ATATTCTTACGTACGTATAT+AGG | 0.352246 | 8.2:+3125516 | None:intergenic |
CTTCTTGAGCGGCATAGAAT+TGG | 0.356922 | 8.2:+3122686 | None:intergenic |
CATAGTCATTAGGAGGCCTT+TGG | 0.367248 | 8.2:+3125095 | None:intergenic |
TAATAGGTTCTGCCATCTTT+GGG | 0.372638 | 8.2:-3124512 | MS.gene84147:intron |
AGAGATGAATAAAGAAATAC+TGG | 0.372946 | 8.2:-3124197 | MS.gene84147:CDS |
ACTTTCTTTGATAAAACATC+TGG | 0.378071 | 8.2:+3123069 | None:intergenic |
AAACTCCTCAACATTCTTGA+AGG | 0.392226 | 8.2:-3125578 | MS.gene84147:CDS |
AACACTTGCAATTAAAGCAT+TGG | 0.403799 | 8.2:-3123514 | MS.gene84147:CDS |
CAAAGGCCTCCTAATGACTA+TGG | 0.405765 | 8.2:-3125094 | MS.gene84147:CDS |
CTCAGGAGTGAAATTAGGTT+CGG | 0.406007 | 8.2:+3125550 | None:intergenic |
GTTGTGTTTGAAGTTGATTT+GGG | 0.419950 | 8.2:-3123024 | MS.gene84147:CDS |
GTTTGAAGTTGATTTGGGTT+TGG | 0.429981 | 8.2:-3123019 | MS.gene84147:CDS |
ATAGTCATTAGGAGGCCTTT+GGG | 0.431046 | 8.2:+3125096 | None:intergenic |
GATGATCTTCATACATATGC+AGG | 0.437688 | 8.2:-3122793 | MS.gene84147:CDS |
AGTTCTAGGCCATAGTCATT+AGG | 0.438107 | 8.2:+3125085 | None:intergenic |
TAAACAGTTCTCTCAACAAA+AGG | 0.442419 | 8.2:+3124474 | None:intergenic |
GCCATCTTTGGGAGAAAAGA+AGG | 0.451898 | 8.2:-3124501 | MS.gene84147:CDS |
TATCAACTTAGAAGAAGGAT+TGG | 0.452292 | 8.2:-3125624 | MS.gene84147:CDS |
ATTCACTTCATGAACAGAAA+TGG | 0.455202 | 8.2:+3122930 | None:intergenic |
AGAGACTTGGGAACCTTGCA+TGG | 0.478969 | 8.2:-3122756 | MS.gene84147:CDS |
TGATGTTGACCCTATAACTC+TGG | 0.483537 | 8.2:-3122815 | MS.gene84147:CDS |
GAATTTATCAACTTAGAAGA+AGG | 0.483555 | 8.2:-3125629 | MS.gene84147:CDS |
TCAGGAGTGAAATTAGGTTC+GGG | 0.496733 | 8.2:+3125551 | None:intergenic |
TAGAATTGGACGAGTTCCTC+TGG | 0.497801 | 8.2:+3122700 | None:intergenic |
GTATCCAGATTGATCCGAAA+CGG | 0.501653 | 8.2:-3123557 | MS.gene84147:intron |
TCAACATCACCAATCGGAAT+CGG | 0.502713 | 8.2:+3122955 | None:intergenic |
TATCCAGATTGATCCGAAAC+GGG | 0.511511 | 8.2:-3123556 | MS.gene84147:intron |
ACTGGATGCTATAGTTGCTA+TGG | 0.514027 | 8.2:-3124179 | MS.gene84147:intron |
GAAAGTCAACTTGGTAAGCT+CGG | 0.520925 | 8.2:-3123052 | MS.gene84147:CDS |
CAAATTTCTTATCCCATGCA+AGG | 0.522321 | 8.2:+3122743 | None:intergenic |
TCAACTTGGTAAGCTCGGAC+AGG | 0.523618 | 8.2:-3123047 | MS.gene84147:CDS |
TATAGGTTAATGTGTTCCTC+AGG | 0.531967 | 8.2:+3125533 | None:intergenic |
AGTATGTTGATCTCAAGGAC+TGG | 0.535333 | 8.2:-3122852 | MS.gene84147:CDS |
GAAGATCATCCAGAGTTATA+GGG | 0.538617 | 8.2:+3122806 | None:intergenic |
GAGACCATTCCGATTCCGAT+TGG | 0.541494 | 8.2:-3122964 | MS.gene84147:CDS |
ATGGTATCAACATCACCAAT+CGG | 0.541955 | 8.2:+3122949 | None:intergenic |
TTTATCAAAGAAAGTCAACT+TGG | 0.543241 | 8.2:-3123061 | MS.gene84147:CDS |
AAGCTGGTTTCTTCAAGAGA+AGG | 0.550231 | 8.2:+3124362 | None:intergenic |
GTATGTTGATCTCAAGGACT+GGG | 0.555633 | 8.2:-3122851 | MS.gene84147:CDS |
ACAGAAGTATGTTGATCTCA+AGG | 0.556799 | 8.2:-3122857 | MS.gene84147:CDS |
ATGGTAAAAGGATATGAAGC+TGG | 0.562807 | 8.2:+3124346 | None:intergenic |
ATCACCAATCGGAATCGGAA+TGG | 0.586243 | 8.2:+3122960 | None:intergenic |
GAAGTTTGAGTCTTCTTGAG+CGG | 0.586794 | 8.2:+3122675 | None:intergenic |
CAGATTACATAGTTATGACC+AGG | 0.588365 | 8.2:-3124442 | MS.gene84147:CDS |
AGAACTATACGACAAGTACA+AGG | 0.591577 | 8.2:-3125068 | MS.gene84147:CDS |
TACTTGAAAATCGAGAGACT+TGG | 0.593142 | 8.2:-3122769 | MS.gene84147:CDS |
CAACTTGGTAAGCTCGGACA+GGG | 0.603846 | 8.2:-3123046 | MS.gene84147:CDS |
CTCAAGAATACACAAGGCAA+AGG | 0.606376 | 8.2:-3123466 | MS.gene84147:intron |
ACTTGAAAATCGAGAGACTT+GGG | 0.609483 | 8.2:-3122768 | MS.gene84147:CDS |
CTGTCAAGGTATGACGATGA+GGG | 0.611547 | 8.2:-3125651 | None:intergenic |
GTCATTAGGAGGCCTTTGGG+TGG | 0.615112 | 8.2:+3125099 | None:intergenic |
GAATAGCAAAATGTTGAGCA+TGG | 0.627648 | 8.2:-3122911 | MS.gene84147:CDS |
CGATTGCTCAAGAATACACA+AGG | 0.630865 | 8.2:-3123472 | MS.gene84147:CDS |
TCTGTCAAGGTATGACGATG+AGG | 0.635757 | 8.2:-3125652 | None:intergenic |
GAGACTTGGGAACCTTGCAT+GGG | 0.636934 | 8.2:-3122755 | MS.gene84147:CDS |
GTAAACCTTCAAGAATGTTG+AGG | 0.636957 | 8.2:+3125573 | None:intergenic |
TCTAGGCCATAGTCATTAGG+AGG | 0.637348 | 8.2:+3125088 | None:intergenic |
TCTTTGGGAGAAAAGAAGGA+TGG | 0.647182 | 8.2:-3124497 | MS.gene84147:CDS |
GGATTGGAGACTATGCAGAA+AGG | 0.648663 | 8.2:-3125608 | MS.gene84147:CDS |
AAATCTAAAGACTCTTCTCG+TGG | 0.650288 | 8.2:+3122635 | None:intergenic |
ATGATCTTCATACATATGCA+GGG | 0.656987 | 8.2:-3122792 | MS.gene84147:CDS |
CGAACCTAATTTCACTCCTG+AGG | 0.662065 | 8.2:-3125549 | MS.gene84147:CDS |
TCTACAATATGTCCACCCAA+AGG | 0.683184 | 8.2:-3125111 | MS.gene84147:CDS |
GATAAAAGACATGACACCAG+AGG | 0.694992 | 8.2:-3122716 | MS.gene84147:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAACATAATTGTATTAGAAA+CGG | - | chr8.2:3124222-3124241 | MS.gene84147:intron | 15.0% |
!! | AATACATCTTTCTTATTAAT+AGG | - | chr8.2:3123752-3123771 | MS.gene84147:intron | 15.0% |
!! | ATAACAAAGATTAAAACATA+AGG | + | chr8.2:3124656-3124675 | None:intergenic | 15.0% |
!! | CAAAAAAAAACTACATAATT+AGG | + | chr8.2:3124525-3124544 | None:intergenic | 15.0% |
!!! | AATTCTTTTGAAATATGTTT+TGG | - | chr8.2:3124899-3124918 | MS.gene84147:intron | 15.0% |
!! | AAAGAAATATTAGGATTCTT+TGG | - | chr8.2:3125055-3125074 | MS.gene84147:CDS | 20.0% |
!! | AAGTATCAAACATATAGAAA+TGG | + | chr8.2:3124140-3124159 | None:intergenic | 20.0% |
!! | AAGTATTTAGCGTTATTATT+GGG | - | chr8.2:3122905-3122924 | MS.gene84147:CDS | 20.0% |
!! | AGAAACTTTAATAATGTATC+TGG | - | chr8.2:3122842-3122861 | MS.gene84147:CDS | 20.0% |
!! | AGTATCAAACATATAGAAAT+GGG | + | chr8.2:3124139-3124158 | None:intergenic | 20.0% |
!! | AGTATTAGAAATTAGACTTA+AGG | + | chr8.2:3123622-3123641 | None:intergenic | 20.0% |
!! | ATCCTAATATTTCTTTATAG+TGG | + | chr8.2:3125051-3125070 | None:intergenic | 20.0% |
!! | GAAACTTTAATAATGTATCT+GGG | - | chr8.2:3122843-3122862 | MS.gene84147:CDS | 20.0% |
!! | GATTTATATATGACTATTTC+AGG | - | chr8.2:3125083-3125102 | MS.gene84147:CDS | 20.0% |
!! | TAAAAACAACGTAAACTAAA+AGG | - | chr8.2:3124288-3124307 | MS.gene84147:intron | 20.0% |
!! | TAAGTATTTAGCGTTATTAT+TGG | - | chr8.2:3122904-3122923 | MS.gene84147:CDS | 20.0% |
!! | TACCACTATAAAGAAATATT+AGG | - | chr8.2:3125046-3125065 | MS.gene84147:CDS | 20.0% |
!! | TATAAGTTCCAATTATACAA+CGG | + | chr8.2:3124365-3124384 | None:intergenic | 20.0% |
!! | TTATTATTGGGATAAAGATA+AGG | - | chr8.2:3122917-3122936 | MS.gene84147:CDS | 20.0% |
!!! | TGCATTACAATTTTTAGAAA+AGG | + | chr8.2:3123143-3123162 | None:intergenic | 20.0% |
!!! | TTAGTCTAGTTTTTTTAACT+TGG | + | chr8.2:3125150-3125169 | None:intergenic | 20.0% |
!!! | TTTTCTAAAAATTGTAATGC+AGG | - | chr8.2:3123142-3123161 | MS.gene84147:intron | 20.0% |
! | AAACTAGACTAAGATATTAG+TGG | - | chr8.2:3125158-3125177 | MS.gene84147:intron | 25.0% |
! | AAATGAATTAACACAACACA+AGG | + | chr8.2:3123118-3123137 | None:intergenic | 25.0% |
! | ACTTATGTCAAAAAGATTTG+AGG | - | chr8.2:3125285-3125304 | MS.gene84147:intron | 25.0% |
! | ACTTTCTTTGATAAAACATC+TGG | + | chr8.2:3125214-3125233 | None:intergenic | 25.0% |
! | AGAGATGAATAAAGAAATAC+TGG | - | chr8.2:3124083-3124102 | MS.gene84147:intron | 25.0% |
! | AGGTATTACTTACATTAACA+TGG | - | chr8.2:3123721-3123740 | MS.gene84147:intron | 25.0% |
! | ATAAGTTCCAATTATACAAC+GGG | + | chr8.2:3124364-3124383 | None:intergenic | 25.0% |
! | ATAATTGGAACTTATACAGT+GGG | - | chr8.2:3124369-3124388 | MS.gene84147:CDS | 25.0% |
! | ATATAAAACTGTATGGGAAA+GGG | + | chr8.2:3123487-3123506 | None:intergenic | 25.0% |
! | ATATTCTTACGTACGTATAT+AGG | + | chr8.2:3122767-3122786 | None:intergenic | 25.0% |
! | ATTAGAAATTAGACTTAAGG+AGG | + | chr8.2:3123619-3123638 | None:intergenic | 25.0% |
! | GAATTTATCAACTTAGAAGA+AGG | - | chr8.2:3122651-3122670 | MS.gene84147:CDS | 25.0% |
! | GGAATCATTGCTTAATAATT+GGG | + | chr8.2:3125129-3125148 | None:intergenic | 25.0% |
! | TAAAATTTCCATATCTAGCA+TGG | - | chr8.2:3124876-3124895 | MS.gene84147:intron | 25.0% |
! | TATAATTGGAACTTATACAG+TGG | - | chr8.2:3124368-3124387 | MS.gene84147:CDS | 25.0% |
! | TGCTATATTCAATCCAAATT+AGG | - | chr8.2:3124630-3124649 | MS.gene84147:intron | 25.0% |
! | TGGAATCATTGCTTAATAAT+TGG | + | chr8.2:3125130-3125149 | None:intergenic | 25.0% |
! | TTAAAACATAAGGCCTAATT+TGG | + | chr8.2:3124646-3124665 | None:intergenic | 25.0% |
! | TTACTTTCTCAAATAATCAC+CGG | + | chr8.2:3123343-3123362 | None:intergenic | 25.0% |
! | TTGACCATATAAAACTGTAT+GGG | + | chr8.2:3123493-3123512 | None:intergenic | 25.0% |
! | TTTAATCGTCAACTATCTAA+TGG | - | chr8.2:3124428-3124447 | MS.gene84147:CDS | 25.0% |
! | TTTATCAAAGAAAGTCAACT+TGG | - | chr8.2:3125219-3125238 | MS.gene84147:intron | 25.0% |
! | TTTGACCATATAAAACTGTA+TGG | + | chr8.2:3123494-3123513 | None:intergenic | 25.0% |
!! | GATAGCAAAATAATTTTGAG+AGG | + | chr8.2:3123866-3123885 | None:intergenic | 25.0% |
!!! | CTTTTGAAATATGTTTTGGT+CGG | - | chr8.2:3124903-3124922 | MS.gene84147:intron | 25.0% |
!!! | TGCTTCATTTTAATTATCTC+AGG | - | chr8.2:3124053-3124072 | MS.gene84147:intron | 25.0% |
AAAGAATTCCATGCTAGATA+TGG | + | chr8.2:3124887-3124906 | None:intergenic | 30.0% | |
AACACTTGCAATTAAAGCAT+TGG | - | chr8.2:3124766-3124785 | MS.gene84147:intron | 30.0% | |
AAGATATTAGTGGTAATTGC+AGG | - | chr8.2:3125168-3125187 | MS.gene84147:intron | 30.0% | |
AGAGAAGGAAGTTTATATCT+TGG | + | chr8.2:3123906-3123925 | None:intergenic | 30.0% | |
ATATGAATTGTGCAGTTGAA+TGG | - | chr8.2:3124581-3124600 | MS.gene84147:intron | 30.0% | |
ATGATCTTCATACATATGCA+GGG | - | chr8.2:3125488-3125507 | MS.gene84147:intron | 30.0% | |
ATTCACTTCATGAACAGAAA+TGG | + | chr8.2:3125353-3125372 | None:intergenic | 30.0% | |
CATATAAAACTGTATGGGAA+AGG | + | chr8.2:3123488-3123507 | None:intergenic | 30.0% | |
CATGTTTAGCAAAATCCAAA+TGG | + | chr8.2:3123679-3123698 | None:intergenic | 30.0% | |
CTGGGAATAGAGTTTATTAA+AGG | - | chr8.2:3123034-3123053 | MS.gene84147:CDS | 30.0% | |
CTTCAAAGACCATTATATAC+TGG | + | chr8.2:3123584-3123603 | None:intergenic | 30.0% | |
GTAAGTAATACCTACACTAT+CGG | + | chr8.2:3123714-3123733 | None:intergenic | 30.0% | |
TAAACAGTTCTCTCAACAAA+AGG | + | chr8.2:3123809-3123828 | None:intergenic | 30.0% | |
TACACTTGCATTTGAGAAAA+AGG | - | chr8.2:3124454-3124473 | MS.gene84147:CDS | 30.0% | |
TATCAACTTAGAAGAAGGAT+TGG | - | chr8.2:3122656-3122675 | MS.gene84147:CDS | 30.0% | |
TCGTTAGGAAAATTGTATTC+AGG | - | chr8.2:3124935-3124954 | MS.gene84147:intron | 30.0% | |
TGAGAGAACTGTTTAGAAAA+TGG | - | chr8.2:3123814-3123833 | MS.gene84147:intron | 30.0% | |
TTATACAGTGGGAACTTATT+TGG | - | chr8.2:3124380-3124399 | MS.gene84147:CDS | 30.0% | |
TTATGTATGAGACTCTAGTT+TGG | + | chr8.2:3124984-3125003 | None:intergenic | 30.0% | |
! | AATAATGTATCTGGGATTAG+TGG | - | chr8.2:3122851-3122870 | MS.gene84147:CDS | 30.0% |
! | ATGTGCTGTACACTTTATTT+AGG | + | chr8.2:3124268-3124287 | None:intergenic | 30.0% |
! | CATTTGGATTTTGCTAAACA+TGG | - | chr8.2:3123677-3123696 | MS.gene84147:intron | 30.0% |
! | GTTGTGTTTGAAGTTGATTT+GGG | - | chr8.2:3125256-3125275 | MS.gene84147:intron | 30.0% |
! | TAGTCTTGATAAACTCTTTC+AGG | + | chr8.2:3122943-3122962 | None:intergenic | 30.0% |
! | TCCTTCTCAAGATTTAAAAC+TGG | + | chr8.2:3125022-3125041 | None:intergenic | 30.0% |
!! | ACAGTTTTATATGGTCAAAG+TGG | - | chr8.2:3123495-3123514 | MS.gene84147:CDS | 30.0% |
!! | CAGTTTTATATGGTCAAAGT+GGG | - | chr8.2:3123496-3123515 | MS.gene84147:CDS | 30.0% |
!! | CTTTCCCATACAGTTTTATA+TGG | - | chr8.2:3123486-3123505 | MS.gene84147:CDS | 30.0% |
!! | TATTTTTACCATCCTTGGTA+GGG | + | chr8.2:3124335-3124354 | None:intergenic | 30.0% |
!!! | ACCAGTTTTAAATCTTGAGA+AGG | - | chr8.2:3125018-3125037 | MS.gene84147:intron | 30.0% |
AAACTCCTCAACATTCTTGA+AGG | - | chr8.2:3122702-3122721 | MS.gene84147:CDS | 35.0% | |
AAGACCATTATATACTGGAC+AGG | + | chr8.2:3123579-3123598 | None:intergenic | 35.0% | |
AATTAGGTCAAGACACGTAA+AGG | + | chr8.2:3124509-3124528 | None:intergenic | 35.0% | |
ACTTGAAAATCGAGAGACTT+GGG | - | chr8.2:3125512-3125531 | MS.gene84147:intron | 35.0% | |
AGAACTATACGACAAGTACA+AGG | - | chr8.2:3123212-3123231 | MS.gene84147:intron | 35.0% | |
AGAGTTCATAAAGGGGAAAA+GGG | + | chr8.2:3124028-3124047 | None:intergenic | 35.0% | |
AGCAAACTCAGAGTTCATAA+AGG | + | chr8.2:3124037-3124056 | None:intergenic | 35.0% | |
ATCACTAACCAGATGGTAAA+AGG | + | chr8.2:3123949-3123968 | None:intergenic | 35.0% | |
ATGGTAAAAGGATATGAAGC+TGG | + | chr8.2:3123937-3123956 | None:intergenic | 35.0% | |
ATGGTATCAACATCACCAAT+CGG | + | chr8.2:3125334-3125353 | None:intergenic | 35.0% | |
CAAACTCAGAGTTCATAAAG+GGG | + | chr8.2:3124035-3124054 | None:intergenic | 35.0% | |
CAAATTTCTTATCCCATGCA+AGG | + | chr8.2:3125540-3125559 | None:intergenic | 35.0% | |
CAGATTACATAGTTATGACC+AGG | - | chr8.2:3123838-3123857 | MS.gene84147:intron | 35.0% | |
CTAACCCATCTTTACAAAAC+CGG | + | chr8.2:3122978-3122997 | None:intergenic | 35.0% | |
CTTGCATGGGATAAGAAATT+TGG | - | chr8.2:3125538-3125557 | MS.gene84147:CDS | 35.0% | |
GAAGACAAAAGAGCTATTAC+AGG | + | chr8.2:3124695-3124714 | None:intergenic | 35.0% | |
GAAGATCATCCAGAGTTATA+GGG | + | chr8.2:3125477-3125496 | None:intergenic | 35.0% | |
GAATAGCAAAATGTTGAGCA+TGG | - | chr8.2:3125369-3125388 | MS.gene84147:intron | 35.0% | |
GAATATCATCACTAACCAGA+TGG | + | chr8.2:3123956-3123975 | None:intergenic | 35.0% | |
GATGATCTTCATACATATGC+AGG | - | chr8.2:3125487-3125506 | MS.gene84147:intron | 35.0% | |
GATTAAAGTCAAGCATCTCT+TGG | + | chr8.2:3124415-3124434 | None:intergenic | 35.0% | |
GCAAACTCAGAGTTCATAAA+GGG | + | chr8.2:3124036-3124055 | None:intergenic | 35.0% | |
GTAAACCTTCAAGAATGTTG+AGG | + | chr8.2:3122710-3122729 | None:intergenic | 35.0% | |
GTAATTGCAGGAAGAGAAAA+TGG | - | chr8.2:3125180-3125199 | MS.gene84147:intron | 35.0% | |
TAATAGGTTCTGCCATCTTT+GGG | - | chr8.2:3123768-3123787 | MS.gene84147:intron | 35.0% | |
TACTTGAAAATCGAGAGACT+TGG | - | chr8.2:3125511-3125530 | MS.gene84147:intron | 35.0% | |
TATAGGTTAATGTGTTCCTC+AGG | + | chr8.2:3122750-3122769 | None:intergenic | 35.0% | |
TGAAGATCATCCAGAGTTAT+AGG | + | chr8.2:3125478-3125497 | None:intergenic | 35.0% | |
TGATATTATGTAGCACACAC+CGG | - | chr8.2:3123321-3123340 | MS.gene84147:intron | 35.0% | |
TGTACTTGTCGTATAGTTCT+AGG | + | chr8.2:3123212-3123231 | None:intergenic | 35.0% | |
TGTGAGTAAGCAAACAACTA+TGG | + | chr8.2:3123648-3123667 | None:intergenic | 35.0% | |
TTAATAGGTTCTGCCATCTT+TGG | - | chr8.2:3123767-3123786 | MS.gene84147:intron | 35.0% | |
TTCAAGAATGTTGAGGAGTT+TGG | + | chr8.2:3122703-3122722 | None:intergenic | 35.0% | |
! | ACAGAAGTATGTTGATCTCA+AGG | - | chr8.2:3125423-3125442 | MS.gene84147:intron | 35.0% |
! | CTTCATATCCTTTTACCATC+TGG | - | chr8.2:3123938-3123957 | MS.gene84147:intron | 35.0% |
! | GCTCTTTTGTCTTCATTTCT+TGG | - | chr8.2:3124701-3124720 | MS.gene84147:intron | 35.0% |
! | GCTGTACACTTTATTTAGGT+TGG | + | chr8.2:3124264-3124283 | None:intergenic | 35.0% |
! | GGCTGATTCAACTAGTTTAA+CGG | - | chr8.2:3123055-3123074 | MS.gene84147:CDS | 35.0% |
! | GGTTGTGTTTGAAGTTGATT+TGG | - | chr8.2:3125255-3125274 | MS.gene84147:intron | 35.0% |
! | TGATTCAACTAGTTTAACGG+TGG | - | chr8.2:3123058-3123077 | MS.gene84147:CDS | 35.0% |
! | TGGATTTTGCTAAACATGGA+AGG | - | chr8.2:3123681-3123700 | MS.gene84147:intron | 35.0% |
!! | ACAGGTATTTTTACCATCCT+TGG | + | chr8.2:3124340-3124359 | None:intergenic | 35.0% |
!! | GTATTTTTACCATCCTTGGT+AGG | + | chr8.2:3124336-3124355 | None:intergenic | 35.0% |
!! | GTTTGAAGTTGATTTGGGTT+TGG | - | chr8.2:3125261-3125280 | MS.gene84147:intron | 35.0% |
AAGACTAACAATCTTCACGC+CGG | - | chr8.2:3122956-3122975 | MS.gene84147:CDS | 40.0% | |
ACCTGTACCCGTTGTATAAT+TGG | - | chr8.2:3124354-3124373 | MS.gene84147:CDS | 40.0% | |
ACGCTGTATTTGCTCAATCT+TGG | - | chr8.2:3123088-3123107 | MS.gene84147:CDS | 40.0% | |
ACTCACATGCATCAACCATT+TGG | - | chr8.2:3123661-3123680 | MS.gene84147:intron | 40.0% | |
ACTGCCTGTCCAGTATATAA+TGG | - | chr8.2:3123572-3123591 | MS.gene84147:intron | 40.0% | |
ACTGGATGCTATAGTTGCTA+TGG | - | chr8.2:3124101-3124120 | MS.gene84147:intron | 40.0% | |
ACTTCAGATTTAGGCATGTC+TGG | + | chr8.2:3123404-3123423 | None:intergenic | 40.0% | |
AGTATGTTGATCTCAAGGAC+TGG | - | chr8.2:3125428-3125447 | MS.gene84147:intron | 40.0% | |
ATAGTCATTAGGAGGCCTTT+GGG | + | chr8.2:3123187-3123206 | None:intergenic | 40.0% | |
CAGAGTTCATAAAGGGGAAA+AGG | + | chr8.2:3124029-3124048 | None:intergenic | 40.0% | |
CGATTGCTCAAGAATACACA+AGG | - | chr8.2:3124808-3124827 | MS.gene84147:intron | 40.0% | |
CTCAAGAATACACAAGGCAA+AGG | - | chr8.2:3124814-3124833 | MS.gene84147:intron | 40.0% | |
CTCAGGAGTGAAATTAGGTT+CGG | + | chr8.2:3122733-3122752 | None:intergenic | 40.0% | |
GAAAGTCAACTTGGTAAGCT+CGG | - | chr8.2:3125228-3125247 | MS.gene84147:intron | 40.0% | |
GAAGTTTGAGTCTTCTTGAG+CGG | + | chr8.2:3125608-3125627 | None:intergenic | 40.0% | |
GATAAAAGACATGACACCAG+AGG | - | chr8.2:3125564-3125583 | MS.gene84147:CDS | 40.0% | |
GTATCCAGATTGATCCGAAA+CGG | - | chr8.2:3124723-3124742 | MS.gene84147:intron | 40.0% | |
GTATGTTGATCTCAAGGACT+GGG | - | chr8.2:3125429-3125448 | MS.gene84147:intron | 40.0% | |
GTATTAGAAACGGAGTACAG+AGG | - | chr8.2:3124232-3124251 | MS.gene84147:intron | 40.0% | |
TATCCAGATTGATCCGAAAC+GGG | - | chr8.2:3124724-3124743 | MS.gene84147:intron | 40.0% | |
TCAACATCACCAATCGGAAT+CGG | + | chr8.2:3125328-3125347 | None:intergenic | 40.0% | |
TCAGGAGTGAAATTAGGTTC+GGG | + | chr8.2:3122732-3122751 | None:intergenic | 40.0% | |
TCCAATTATACAACGGGTAC+AGG | + | chr8.2:3124358-3124377 | None:intergenic | 40.0% | |
TCTACAATATGTCCACCCAA+AGG | - | chr8.2:3123169-3123188 | MS.gene84147:intron | 40.0% | |
TGAATTGTGCAGTTGAATGG+TGG | - | chr8.2:3124584-3124603 | MS.gene84147:intron | 40.0% | |
TGATGTTGACCCTATAACTC+TGG | - | chr8.2:3125465-3125484 | MS.gene84147:intron | 40.0% | |
TGTTCCTCAGGAGTGAAATT+AGG | + | chr8.2:3122738-3122757 | None:intergenic | 40.0% | |
! | AAGCTGGTTTCTTCAAGAGA+AGG | + | chr8.2:3123921-3123940 | None:intergenic | 40.0% |
! | AATTTTCCTAACGACGCACA+AGG | + | chr8.2:3124929-3124948 | None:intergenic | 40.0% |
! | TCCTTCTTTTCTCCCAAAGA+TGG | + | chr8.2:3123783-3123802 | None:intergenic | 40.0% |
! | TCTTTGGGAGAAAAGAAGGA+TGG | - | chr8.2:3123783-3123802 | MS.gene84147:intron | 40.0% |
!! | AGCACTGACACTTCAGATTT+AGG | + | chr8.2:3123413-3123432 | None:intergenic | 40.0% |
!! | AGTTCTAGGCCATAGTCATT+AGG | + | chr8.2:3123198-3123217 | None:intergenic | 40.0% |
!!! | AAATAATTTTGAGAGGCGCC+TGG | + | chr8.2:3123859-3123878 | None:intergenic | 40.0% |
AGAGTTAGACCCAATAGCGT+TGG | - | chr8.2:3122996-3123015 | MS.gene84147:CDS | 45.0% | |
AGGTCAAGAACCGATAGTGT+AGG | - | chr8.2:3123701-3123720 | MS.gene84147:intron | 45.0% | |
ATCACCAATCGGAATCGGAA+TGG | + | chr8.2:3125323-3125342 | None:intergenic | 45.0% | |
ATCTTCTCTTCTGCCCGTTT+CGG | + | chr8.2:3124740-3124759 | None:intergenic | 45.0% | |
CAAAGGCCTCCTAATGACTA+TGG | - | chr8.2:3123186-3123205 | MS.gene84147:intron | 45.0% | |
CATAGTCATTAGGAGGCCTT+TGG | + | chr8.2:3123188-3123207 | None:intergenic | 45.0% | |
CGAACCTAATTTCACTCCTG+AGG | - | chr8.2:3122731-3122750 | MS.gene84147:CDS | 45.0% | |
CTTCTTGAGCGGCATAGAAT+TGG | + | chr8.2:3125597-3125616 | None:intergenic | 45.0% | |
GAGTTAGACCCAATAGCGTT+GGG | - | chr8.2:3122997-3123016 | MS.gene84147:CDS | 45.0% | |
GGATTGGAGACTATGCAGAA+AGG | - | chr8.2:3122672-3122691 | MS.gene84147:CDS | 45.0% | |
TAGAATTGGACGAGTTCCTC+TGG | + | chr8.2:3125583-3125602 | None:intergenic | 45.0% | |
TCAGATTTAGGCATGTCTGG+TGG | + | chr8.2:3123401-3123420 | None:intergenic | 45.0% | |
TCTAGGCCATAGTCATTAGG+AGG | + | chr8.2:3123195-3123214 | None:intergenic | 45.0% | |
! | GCCATCTTTGGGAGAAAAGA+AGG | - | chr8.2:3123779-3123798 | MS.gene84147:intron | 45.0% |
!!! | CACGCCGGTTTTGTAAAGAT+GGG | - | chr8.2:3122971-3122990 | MS.gene84147:CDS | 45.0% |
!!! | TCACGCCGGTTTTGTAAAGA+TGG | - | chr8.2:3122970-3122989 | MS.gene84147:CDS | 45.0% |
AGAGACTTGGGAACCTTGCA+TGG | - | chr8.2:3125524-3125543 | MS.gene84147:intron | 50.0% | |
CAACTTGGTAAGCTCGGACA+GGG | - | chr8.2:3125234-3125253 | MS.gene84147:intron | 50.0% | |
GAGACCATTCCGATTCCGAT+TGG | - | chr8.2:3125316-3125335 | MS.gene84147:intron | 50.0% | |
GAGACTTGGGAACCTTGCAT+GGG | - | chr8.2:3125525-3125544 | MS.gene84147:intron | 50.0% | |
GATTTAGGCATGTCTGGTGG+CGG | + | chr8.2:3123398-3123417 | None:intergenic | 50.0% | |
TACCATCCTTGGTAGGGTGT+CGG | + | chr8.2:3124329-3124348 | None:intergenic | 50.0% | |
TCAACTTGGTAAGCTCGGAC+AGG | - | chr8.2:3125233-3125252 | MS.gene84147:intron | 50.0% | |
! | GTATCTGGGATTAGTGGCTG+TGG | - | chr8.2:3122857-3122876 | MS.gene84147:CDS | 50.0% |
CTGCCCGTTTCGGATCAATC+TGG | + | chr8.2:3124730-3124749 | None:intergenic | 55.0% | |
GTCATTAGGAGGCCTTTGGG+TGG | + | chr8.2:3123184-3123203 | None:intergenic | 55.0% | |
!! | CTTGGTAGGGTGTCGGTCAT+CGG | + | chr8.2:3124322-3124341 | None:intergenic | 55.0% |
CGATGACCGACACCCTACCA+AGG | - | chr8.2:3124320-3124339 | MS.gene84147:intron | 60.0% | |
CTCCCACGCCCAACGCTATT+GGG | + | chr8.2:3123008-3123027 | None:intergenic | 60.0% | |
GACCGACACCCTACCAAGGA+TGG | - | chr8.2:3124324-3124343 | MS.gene84147:intron | 60.0% | |
TCTCCCACGCCCAACGCTAT+TGG | + | chr8.2:3123009-3123028 | None:intergenic | 60.0% | |
! | AGACCCAATAGCGTTGGGCG+TGG | - | chr8.2:3123002-3123021 | MS.gene84147:CDS | 60.0% |
! | GACCCAATAGCGTTGGGCGT+GGG | - | chr8.2:3123003-3123022 | MS.gene84147:CDS | 60.0% |
! | TGGGCGTGGGAGAGTGTACT+GGG | - | chr8.2:3123016-3123035 | MS.gene84147:CDS | 60.0% |
! | TTGGGCGTGGGAGAGTGTAC+TGG | - | chr8.2:3123015-3123034 | MS.gene84147:CDS | 60.0% |
! | GGTCGGCCTTGTGCGTCGTT+AGG | - | chr8.2:3124920-3124939 | MS.gene84147:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 3122639 | 3125663 | 3122639 | ID=MS.gene84147 |
chr8.2 | mRNA | 3122639 | 3125663 | 3122639 | ID=MS.gene84147.t1;Parent=MS.gene84147 |
chr8.2 | exon | 3125530 | 3125663 | 3125530 | ID=MS.gene84147.t1.exon1;Parent=MS.gene84147.t1 |
chr8.2 | CDS | 3125530 | 3125663 | 3125530 | ID=cds.MS.gene84147.t1;Parent=MS.gene84147.t1 |
chr8.2 | exon | 3125039 | 3125138 | 3125039 | ID=MS.gene84147.t1.exon2;Parent=MS.gene84147.t1 |
chr8.2 | CDS | 3125039 | 3125138 | 3125039 | ID=cds.MS.gene84147.t1;Parent=MS.gene84147.t1 |
chr8.2 | exon | 3124343 | 3124528 | 3124343 | ID=MS.gene84147.t1.exon3;Parent=MS.gene84147.t1 |
chr8.2 | CDS | 3124343 | 3124528 | 3124343 | ID=cds.MS.gene84147.t1;Parent=MS.gene84147.t1 |
chr8.2 | exon | 3124180 | 3124227 | 3124180 | ID=MS.gene84147.t1.exon4;Parent=MS.gene84147.t1 |
chr8.2 | CDS | 3124180 | 3124227 | 3124180 | ID=cds.MS.gene84147.t1;Parent=MS.gene84147.t1 |
chr8.2 | exon | 3123467 | 3123571 | 3123467 | ID=MS.gene84147.t1.exon5;Parent=MS.gene84147.t1 |
chr8.2 | CDS | 3123467 | 3123571 | 3123467 | ID=cds.MS.gene84147.t1;Parent=MS.gene84147.t1 |
chr8.2 | exon | 3122639 | 3123112 | 3122639 | ID=MS.gene84147.t1.exon6;Parent=MS.gene84147.t1 |
chr8.2 | CDS | 3122639 | 3123112 | 3122639 | ID=cds.MS.gene84147.t1;Parent=MS.gene84147.t1 |
Gene Sequence |
Protein sequence |