Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84197.t1 | XP_013449133.1 | 86.3 | 255 | 32 | 1 | 1 | 252 | 1 | 255 | 9.50E-129 | 469.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84197.t1 | Q9SRM5 | 54.4 | 252 | 113 | 2 | 2 | 252 | 6 | 256 | 3.5e-79 | 296.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84197.t1 | A0A072UBD9 | 86.3 | 255 | 32 | 1 | 1 | 252 | 1 | 255 | 6.8e-129 | 469.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057550 | MS.gene84197 | 0.811817 | 5.79E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84197.t1 | MTR_7g068450 | 86.275 | 255 | 32 | 1 | 1 | 252 | 1 | 255 | 5.50e-165 | 456 |
| MS.gene84197.t1 | MTR_7g068460 | 71.315 | 251 | 70 | 2 | 1 | 251 | 32 | 280 | 2.43e-129 | 367 |
| MS.gene84197.t1 | MTR_7g068470 | 69.721 | 251 | 73 | 3 | 1 | 251 | 1 | 248 | 1.60e-126 | 359 |
| MS.gene84197.t1 | MTR_7g068470 | 69.323 | 251 | 70 | 4 | 1 | 251 | 1 | 244 | 1.06e-124 | 354 |
| MS.gene84197.t1 | MTR_7g068500 | 68.400 | 250 | 77 | 2 | 2 | 251 | 32 | 279 | 1.62e-124 | 355 |
| MS.gene84197.t1 | MTR_7g068530 | 61.753 | 251 | 93 | 2 | 2 | 252 | 6 | 253 | 1.79e-114 | 328 |
| MS.gene84197.t1 | MTR_4g016510 | 60.079 | 253 | 99 | 2 | 1 | 252 | 5 | 256 | 5.19e-111 | 320 |
| MS.gene84197.t1 | MTR_7g068550 | 60.081 | 248 | 96 | 3 | 1 | 247 | 5 | 250 | 3.06e-105 | 305 |
| MS.gene84197.t1 | MTR_3g070460 | 53.571 | 252 | 115 | 2 | 2 | 252 | 6 | 256 | 1.12e-100 | 294 |
| MS.gene84197.t1 | MTR_7g068520 | 41.434 | 251 | 48 | 4 | 1 | 251 | 2 | 153 | 7.89e-53 | 168 |
| MS.gene84197.t1 | MTR_2g015510 | 31.799 | 239 | 147 | 5 | 2 | 229 | 5 | 238 | 2.45e-40 | 139 |
| MS.gene84197.t1 | MTR_4g016500 | 39.189 | 222 | 64 | 5 | 31 | 252 | 277 | 427 | 1.30e-39 | 142 |
| MS.gene84197.t1 | MTR_2g015500 | 31.818 | 242 | 148 | 5 | 2 | 232 | 4 | 239 | 4.35e-39 | 136 |
| MS.gene84197.t1 | MTR_4g105680 | 31.016 | 187 | 122 | 3 | 25 | 205 | 54 | 239 | 5.05e-26 | 103 |
| MS.gene84197.t1 | MTR_2g015480 | 29.897 | 194 | 110 | 7 | 21 | 204 | 76 | 253 | 9.38e-18 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84197.t1 | AT3G11210 | 54.365 | 252 | 113 | 2 | 2 | 252 | 6 | 256 | 3.74e-99 | 290 |
| MS.gene84197.t1 | AT2G38180 | 52.756 | 254 | 107 | 4 | 1 | 252 | 5 | 247 | 6.04e-92 | 273 |
| MS.gene84197.t1 | AT5G45920 | 37.915 | 211 | 123 | 3 | 1 | 204 | 2 | 211 | 2.26e-44 | 150 |
| MS.gene84197.t1 | AT5G45920 | 37.915 | 211 | 123 | 3 | 1 | 204 | 2 | 211 | 2.26e-44 | 150 |
| MS.gene84197.t1 | AT5G62930 | 34.419 | 215 | 135 | 3 | 1 | 209 | 1 | 215 | 3.21e-44 | 149 |
| MS.gene84197.t1 | AT5G62930 | 34.419 | 215 | 135 | 3 | 1 | 209 | 27 | 241 | 5.32e-44 | 149 |
| MS.gene84197.t1 | AT5G45920 | 37.097 | 186 | 111 | 3 | 1 | 180 | 2 | 187 | 1.19e-37 | 131 |
| MS.gene84197.t1 | AT5G45920 | 37.097 | 186 | 111 | 3 | 1 | 180 | 2 | 187 | 1.19e-37 | 131 |
| MS.gene84197.t1 | AT5G62930 | 29.801 | 151 | 100 | 3 | 65 | 209 | 7 | 157 | 8.27e-22 | 89.7 |
Find 57 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATTGCTAACCATTTAA+AGG | 0.219085 | 7.1:+33466571 | MS.gene84197:CDS |
| GAACCAAACAACACAAATTT+AGG | 0.285170 | 7.1:-33465086 | None:intergenic |
| GGGGAGTGAAATGGTGTTAA+AGG | 0.304831 | 7.1:+33467418 | MS.gene84197:CDS |
| GTCAGTGACACGCAAATAAA+AGG | 0.315503 | 7.1:+33466953 | MS.gene84197:CDS |
| GTTGGATCCAATGGATGAAT+TGG | 0.345042 | 7.1:-33467533 | None:intergenic |
| TTTCCTCATCCAAGTGGCCT+TGG | 0.349761 | 7.1:+33466509 | MS.gene84197:CDS |
| AAGACAATGTCAGTTGAGTT+TGG | 0.359013 | 7.1:+33467491 | MS.gene84197:CDS |
| CAATCATTATGGTGAAGGTT+GGG | 0.369849 | 7.1:+33465124 | MS.gene84197:CDS |
| ATTGTTCAATACAATCATTA+TGG | 0.393001 | 7.1:+33465113 | MS.gene84197:CDS |
| AGGCCTAAATTTGTGTTGTT+TGG | 0.393187 | 7.1:+33465083 | MS.gene84197:CDS |
| AGGAATATAAGGCGAGTCTT+TGG | 0.396929 | 7.1:-33466917 | None:intergenic |
| AATGGAAACCAAGTCTATAC+TGG | 0.415055 | 7.1:+33467468 | MS.gene84197:CDS |
| GAGGACAACTGAGGAATATA+AGG | 0.423754 | 7.1:-33466928 | None:intergenic |
| TAATTCAGAGAAGAGAAGAT+TGG | 0.424630 | 7.1:+33467264 | MS.gene84197:CDS |
| CACTCTTTGTCGTGAGGGAA+TGG | 0.432015 | 7.1:-33467581 | None:intergenic |
| GCATTGGCCATTGTCTACTT+TGG | 0.450445 | 7.1:+33466470 | MS.gene84197:CDS |
| GTCGTGAGGGAATGGAATAT+TGG | 0.465722 | 7.1:-33467573 | None:intergenic |
| GATGAATCCAGTGATGAATT+CGG | 0.471222 | 7.1:+33467143 | MS.gene84197:intron |
| ATGAATCCAGTGATGAATTC+GGG | 0.474796 | 7.1:+33467144 | MS.gene84197:intron |
| TTGGCCATTGTCTACTTTGG+TGG | 0.480273 | 7.1:+33466473 | MS.gene84197:CDS |
| CTCTGCTGAGGGGAGTGAAA+TGG | 0.488755 | 7.1:+33467409 | MS.gene84197:CDS |
| ACAATCATTATGGTGAAGGT+TGG | 0.489722 | 7.1:+33465123 | MS.gene84197:CDS |
| GATACGCTGGTTGGAATTCA+AGG | 0.490553 | 7.1:+33466052 | MS.gene84197:CDS |
| GTATGATCCAATTCATCCAT+TGG | 0.492242 | 7.1:+33467526 | MS.gene84197:CDS |
| ACATCAAGGCCATTGATTTG+TGG | 0.494052 | 7.1:+33467237 | MS.gene84197:CDS |
| TTTATTTGCGTGTCACTGAC+GGG | 0.494095 | 7.1:-33466950 | None:intergenic |
| CCTTGGTCCTCATGTACCAT+TGG | 0.495066 | 7.1:+33466526 | MS.gene84197:CDS |
| TGCCATTGAGCAACCAGCAT+TGG | 0.502050 | 7.1:+33466454 | MS.gene84197:CDS |
| GGTGTTAAAGGAAATATTGA+AGG | 0.509295 | 7.1:+33467430 | MS.gene84197:CDS |
| CAATACAATCATTATGGTGA+AGG | 0.519514 | 7.1:+33465119 | MS.gene84197:CDS |
| AATCATTATGGTGAAGGTTG+GGG | 0.521403 | 7.1:+33465125 | MS.gene84197:CDS |
| TGGTCCTCATGTACCATTGG+AGG | 0.525999 | 7.1:+33466529 | MS.gene84197:CDS |
| AATTAAAGACCACAAATCAA+TGG | 0.527394 | 7.1:-33467246 | None:intergenic |
| TGCTCACTTGTACGCTCGTA+AGG | 0.527790 | 7.1:+33465157 | MS.gene84197:CDS |
| ACATGAGGACCAAGGCCACT+TGG | 0.533170 | 7.1:-33466518 | None:intergenic |
| GGGAAACATTTCTCTGCTGA+GGG | 0.534075 | 7.1:+33467398 | MS.gene84197:CDS |
| CATTCCCTCACGACAAAGAG+TGG | 0.547308 | 7.1:+33467582 | MS.gene84197:CDS |
| AAGTAGACAATGGCCAATGC+TGG | 0.550829 | 7.1:-33466467 | None:intergenic |
| AAGGCGTGGTCTACAAGTTG+TGG | 0.554579 | 7.1:+33466071 | MS.gene84197:CDS |
| AATGGATGAATTGGATCATA+CGG | 0.555778 | 7.1:-33467524 | None:intergenic |
| ATTGTCTTCCAGTATAGACT+TGG | 0.558327 | 7.1:-33467476 | None:intergenic |
| TGGGAAACATTTCTCTGCTG+AGG | 0.567024 | 7.1:+33467397 | MS.gene84197:CDS |
| AGGTCATAAAAGAAGCAGAA+TGG | 0.568203 | 7.1:+33467450 | MS.gene84197:CDS |
| TACTCCCACTCTTTGTCGTG+AGG | 0.569239 | 7.1:-33467587 | None:intergenic |
| GGACCAAGGCCACTTGGATG+AGG | 0.573813 | 7.1:-33466512 | None:intergenic |
| ACTCCCACTCTTTGTCGTGA+GGG | 0.578285 | 7.1:-33467586 | None:intergenic |
| GGCCAATGCTGGTTGCTCAA+TGG | 0.580694 | 7.1:-33466456 | None:intergenic |
| ATAATGATTGTATTGAACAA+TGG | 0.612955 | 7.1:-33465111 | None:intergenic |
| TATTCCTCCAATGGTACATG+AGG | 0.621940 | 7.1:-33466533 | None:intergenic |
| ATTCCCTCACGACAAAGAGT+GGG | 0.650821 | 7.1:+33467583 | MS.gene84197:CDS |
| ATTTGCGTGTCACTGACGGG+AGG | 0.673430 | 7.1:-33466947 | None:intergenic |
| GTGTGATGCTATGAACATCA+AGG | 0.679403 | 7.1:+33467223 | MS.gene84197:CDS |
| ATTACCACCAAAGTAGACAA+TGG | 0.682482 | 7.1:-33466477 | None:intergenic |
| GCTGGTTGGAATTCAAGGCG+TGG | 0.697276 | 7.1:+33466057 | MS.gene84197:CDS |
| CACTGACGGGAGGACAACTG+AGG | 0.708593 | 7.1:-33466937 | None:intergenic |
| GGAAACATTTCTCTGCTGAG+GGG | 0.709564 | 7.1:+33467399 | MS.gene84197:CDS |
| CCAATGGTACATGAGGACCA+AGG | 0.779472 | 7.1:-33466526 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACATTTCAATAATTTAATT+AGG | + | chr7.1:33467352-33467371 | MS.gene84197:intron | 10.0% |
| !! | ATGATAATAACAATTAAGAT+AGG | - | chr7.1:33466626-33466645 | None:intergenic | 15.0% |
| !! | ATTAAAAATTCAACGATTAT+AGG | + | chr7.1:33465606-33465625 | MS.gene84197:intron | 15.0% |
| !! | ATTTCAATAATTTAATTAGG+TGG | + | chr7.1:33467355-33467374 | MS.gene84197:intron | 15.0% |
| !! | TAAAAAAAAAGAAAGATCAA+AGG | - | chr7.1:33466829-33466848 | None:intergenic | 15.0% |
| !! | TGAATGGATAAAAAATAATT+TGG | + | chr7.1:33465964-33465983 | MS.gene84197:intron | 15.0% |
| !!! | AATTATTTAAATTTTTTGGG+TGG | - | chr7.1:33465713-33465732 | None:intergenic | 15.0% |
| !!! | ATCGTTGAATTTTTAATTTT+TGG | - | chr7.1:33465603-33465622 | None:intergenic | 15.0% |
| !!! | ATGGTAGTATTTTTTTTTTT+TGG | - | chr7.1:33467026-33467045 | None:intergenic | 15.0% |
| !!! | ATTATTTAAATTTTTTGGGT+GGG | - | chr7.1:33465712-33465731 | None:intergenic | 15.0% |
| !!! | GAATATTATATTGATTTACA+TGG | + | chr7.1:33466293-33466312 | MS.gene84197:intron | 15.0% |
| !!! | GATTTTATACAATTTTATGT+CGG | + | chr7.1:33465755-33465774 | MS.gene84197:intron | 15.0% |
| !!! | TCGTTGAATTTTTAATTTTT+GGG | - | chr7.1:33465602-33465621 | None:intergenic | 15.0% |
| !!! | TCTTAATTGTTATTATCATA+TGG | + | chr7.1:33466627-33466646 | MS.gene84197:intron | 15.0% |
| !! | AAAAAAGTGAAATTAAGCTT+AGG | - | chr7.1:33466190-33466209 | None:intergenic | 20.0% |
| !! | AAAAAGTGAAATTAAGCTTA+GGG | - | chr7.1:33466189-33466208 | None:intergenic | 20.0% |
| !! | AAATTTGCACATGAAATAAT+TGG | + | chr7.1:33465936-33465955 | MS.gene84197:intron | 20.0% |
| !! | AATAATTTAATTAGGTGGTT+TGG | + | chr7.1:33467360-33467379 | MS.gene84197:intron | 20.0% |
| !! | ATAATGATTGTATTGAACAA+TGG | - | chr7.1:33465114-33465133 | None:intergenic | 20.0% |
| !! | ATTGTTCAATACAATCATTA+TGG | + | chr7.1:33465113-33465132 | MS.gene84197:CDS | 20.0% |
| !! | ATTTATCTGTCAATTTCATT+AGG | - | chr7.1:33466894-33466913 | None:intergenic | 20.0% |
| !!! | AAAGTACTTATAAAAAGAGA+TGG | - | chr7.1:33465216-33465235 | None:intergenic | 20.0% |
| !!! | CGTTGAATTTTTAATTTTTG+GGG | - | chr7.1:33465601-33465620 | None:intergenic | 20.0% |
| !!! | GATTTTATACAATTTTGTGT+CGG | + | chr7.1:33465641-33465660 | MS.gene84197:intron | 20.0% |
| !!! | GTTGAATTTTTAATTTTTGG+GGG | - | chr7.1:33465600-33465619 | None:intergenic | 20.0% |
| !!! | TACAATTTTATGTCGATTTT+AGG | + | chr7.1:33465762-33465781 | MS.gene84197:intron | 20.0% |
| !!! | TATCTCAATTTTTTAATGAG+TGG | + | chr7.1:33466250-33466269 | MS.gene84197:intron | 20.0% |
| !!! | TGACAATTTTTACCTTTAAA+TGG | - | chr7.1:33466586-33466605 | None:intergenic | 20.0% |
| ! | AACGAACAAAACTTATCATA+TGG | - | chr7.1:33467045-33467064 | None:intergenic | 25.0% |
| ! | AACTTAACATTCAAGATCAT+AGG | - | chr7.1:33466861-33466880 | None:intergenic | 25.0% |
| ! | AATTAAAGACCACAAATCAA+TGG | - | chr7.1:33467249-33467268 | None:intergenic | 25.0% |
| ! | ATGTACAATAATTTCTTGAC+AGG | - | chr7.1:33466781-33466800 | None:intergenic | 25.0% |
| ! | CAACATGTAATTACTACATT+TGG | + | chr7.1:33466976-33466995 | MS.gene84197:intron | 25.0% |
| ! | GTACAATTATATTCCCATAA+AGG | - | chr7.1:33465524-33465543 | None:intergenic | 25.0% |
| ! | TTAGAATTTAGTAATGTCAC+AGG | - | chr7.1:33467095-33467114 | None:intergenic | 25.0% |
| ! | TTCGACTACACTAATATTTA+AGG | - | chr7.1:33466672-33466691 | None:intergenic | 25.0% |
| !! | GAGATATTAATAGTTTTCGT+TGG | - | chr7.1:33467554-33467573 | None:intergenic | 25.0% |
| !!! | AATTTTTAATTTTTGGGGGT+GGG | - | chr7.1:33465596-33465615 | None:intergenic | 25.0% |
| !!! | CTTTTTCAACTACACTAATT+TGG | + | chr7.1:33466727-33466746 | MS.gene84197:intron | 25.0% |
| !!! | TACAATTTTATGTCGGTTTT+AGG | + | chr7.1:33465876-33465895 | MS.gene84197:intron | 25.0% |
| !!! | TTTATGTCGATTTTAGGTTT+CGG | + | chr7.1:33465768-33465787 | MS.gene84197:intron | 25.0% |
| AACACTAAAACTCATTTACG+CGG | + | chr7.1:33465912-33465931 | MS.gene84197:intron | 30.0% | |
| AACTTGTAATGTCGGTATTT+AGG | + | chr7.1:33465291-33465310 | MS.gene84197:intron | 30.0% | |
| AATGAAAATATCAGCATGAG+AGG | - | chr7.1:33465462-33465481 | None:intergenic | 30.0% | |
| AATGGATGAATTGGATCATA+CGG | - | chr7.1:33467527-33467546 | None:intergenic | 30.0% | |
| AGGGTAAAATATTATTGCTG+AGG | - | chr7.1:33466170-33466189 | None:intergenic | 30.0% | |
| ATATTATTGCTGAGGAAAGA+AGG | - | chr7.1:33466162-33466181 | None:intergenic | 30.0% | |
| CAAGATTGCTAACCATTTAA+AGG | + | chr7.1:33466571-33466590 | MS.gene84197:CDS | 30.0% | |
| CAATACAATCATTATGGTGA+AGG | + | chr7.1:33465119-33465138 | MS.gene84197:CDS | 30.0% | |
| CACACATAACTATGAGATAT+TGG | - | chr7.1:33465343-33465362 | None:intergenic | 30.0% | |
| GAAATAATTGGTCACTTGAA+TGG | + | chr7.1:33465948-33465967 | MS.gene84197:intron | 30.0% | |
| GAACCAAACAACACAAATTT+AGG | - | chr7.1:33465089-33465108 | None:intergenic | 30.0% | |
| GCTAAATATATATCCCTTTG+TGG | + | chr7.1:33465251-33465270 | MS.gene84197:intron | 30.0% | |
| GGTGTTAAAGGAAATATTGA+AGG | + | chr7.1:33467430-33467449 | MS.gene84197:CDS | 30.0% | |
| TAATTCAGAGAAGAGAAGAT+TGG | + | chr7.1:33467264-33467283 | MS.gene84197:CDS | 30.0% | |
| TACTTTACTAGTGCCTTTAT+GGG | + | chr7.1:33465508-33465527 | MS.gene84197:intron | 30.0% | |
| TGCCTAAAAAAAATTGCACA+AGG | - | chr7.1:33466229-33466248 | None:intergenic | 30.0% | |
| TTACTTTACTAGTGCCTTTA+TGG | + | chr7.1:33465507-33465526 | MS.gene84197:intron | 30.0% | |
| TTATGTGTGTGAGATTTAAG+TGG | + | chr7.1:33465354-33465373 | MS.gene84197:intron | 30.0% | |
| ! | TGTGGATGATATTTTTCCTA+AGG | + | chr7.1:33466089-33466108 | MS.gene84197:CDS | 30.0% |
| ! | TTTTGTATGTATTCCTCCAA+TGG | - | chr7.1:33466545-33466564 | None:intergenic | 30.0% |
| !! | CTAGAAAATATTTTGGGGAT+GGG | - | chr7.1:33465990-33466009 | None:intergenic | 30.0% |
| !! | TTGTACATTGATTTGATCAG+AGG | + | chr7.1:33465538-33465557 | MS.gene84197:intron | 30.0% |
| !! | TTTGGTTGTTTCTTAGTGAT+GGG | + | chr7.1:33467378-33467397 | MS.gene84197:intron | 30.0% |
| !!! | GAATTTTTAATTTTTGGGGG+TGG | - | chr7.1:33465597-33465616 | None:intergenic | 30.0% |
| !!! | GTCCTTGTGCAATTTTTTTT+AGG | + | chr7.1:33466224-33466243 | MS.gene84197:intron | 30.0% |
| !!! | TACAATTTTGTGTCGGTTTT+AGG | + | chr7.1:33465648-33465667 | MS.gene84197:intron | 30.0% |
| !!! | TGTAGGTTGATATAGTTTTG+CGG | + | chr7.1:33466028-33466047 | MS.gene84197:intron | 30.0% |
| !!! | TTTATGTCGGTTTTAGGTTT+CGG | + | chr7.1:33465882-33465901 | MS.gene84197:intron | 30.0% |
| AAAAGAGATGGACGTTACTA+CGG | - | chr7.1:33465204-33465223 | None:intergenic | 35.0% | |
| AAGACAATGTCAGTTGAGTT+TGG | + | chr7.1:33467491-33467510 | MS.gene84197:CDS | 35.0% | |
| AATCATTATGGTGAAGGTTG+GGG | + | chr7.1:33465125-33465144 | MS.gene84197:CDS | 35.0% | |
| AATCGGATTCTCAATACCTT+AGG | - | chr7.1:33466108-33466127 | None:intergenic | 35.0% | |
| AATGGAAACCAAGTCTATAC+TGG | + | chr7.1:33467468-33467487 | MS.gene84197:CDS | 35.0% | |
| ACAATCATTATGGTGAAGGT+TGG | + | chr7.1:33465123-33465142 | MS.gene84197:CDS | 35.0% | |
| AGGTCATAAAAGAAGCAGAA+TGG | + | chr7.1:33467450-33467469 | MS.gene84197:CDS | 35.0% | |
| ATATCCCTTTGTGGTTCATA+AGG | + | chr7.1:33465260-33465279 | MS.gene84197:intron | 35.0% | |
| ATGAATCCAGTGATGAATTC+GGG | + | chr7.1:33467144-33467163 | MS.gene84197:intron | 35.0% | |
| ATTACCACCAAAGTAGACAA+TGG | - | chr7.1:33466480-33466499 | None:intergenic | 35.0% | |
| ATTGTCTTCCAGTATAGACT+TGG | - | chr7.1:33467479-33467498 | None:intergenic | 35.0% | |
| CAATCATTATGGTGAAGGTT+GGG | + | chr7.1:33465124-33465143 | MS.gene84197:CDS | 35.0% | |
| GATGAATCCAGTGATGAATT+CGG | + | chr7.1:33467143-33467162 | MS.gene84197:intron | 35.0% | |
| GCAAACTCAACTTGTAATGT+CGG | + | chr7.1:33465283-33465302 | MS.gene84197:intron | 35.0% | |
| GTATGATCCAATTCATCCAT+TGG | + | chr7.1:33467526-33467545 | MS.gene84197:CDS | 35.0% | |
| TACACCACTTTACGGAAATT+TGG | - | chr7.1:33465685-33465704 | None:intergenic | 35.0% | |
| TACGAACAAGAAATCTCTGT+AGG | + | chr7.1:33465391-33465410 | MS.gene84197:intron | 35.0% | |
| TATCCCTTTGTGGTTCATAA+GGG | + | chr7.1:33465261-33465280 | MS.gene84197:intron | 35.0% | |
| TGACAGGTGAAAAATCTCAT+TGG | - | chr7.1:33466765-33466784 | None:intergenic | 35.0% | |
| TGATCCAAATTTCCGTAAAG+TGG | + | chr7.1:33465678-33465697 | MS.gene84197:intron | 35.0% | |
| TGTAATGTCGGTATTTAGGT+CGG | + | chr7.1:33465295-33465314 | MS.gene84197:intron | 35.0% | |
| ! | AGGCCTAAATTTGTGTTGTT+TGG | + | chr7.1:33465083-33465102 | MS.gene84197:CDS | 35.0% |
| ! | ATAGTTTTCGTTGGATCCAA+TGG | - | chr7.1:33467545-33467564 | None:intergenic | 35.0% |
| ! | CGGAGCTAGAAAATATTTTG+GGG | - | chr7.1:33465995-33466014 | None:intergenic | 35.0% |
| ! | GCGGAGCTAGAAAATATTTT+GGG | - | chr7.1:33465996-33466015 | None:intergenic | 35.0% |
| !! | GCGTAAATGAGTTTTAGTGT+TGG | - | chr7.1:33465913-33465932 | None:intergenic | 35.0% |
| !! | GCTAGAAAATATTTTGGGGA+TGG | - | chr7.1:33465991-33466010 | None:intergenic | 35.0% |
| !! | GTTTGGTTGTTTCTTAGTGA+TGG | + | chr7.1:33467377-33467396 | MS.gene84197:intron | 35.0% |
| !! | TACATTGATTTGATCAGAGG+CGG | + | chr7.1:33465541-33465560 | MS.gene84197:intron | 35.0% |
| !! | TTTTATTTGCGTGTCACTGA+CGG | - | chr7.1:33466954-33466973 | None:intergenic | 35.0% |
| !!! | GTAGGTTGATATAGTTTTGC+GGG | + | chr7.1:33466029-33466048 | MS.gene84197:intron | 35.0% |
| !!! | TAGGTTGATATAGTTTTGCG+GGG | + | chr7.1:33466030-33466049 | MS.gene84197:intron | 35.0% |
| ACATCTAGTCCAATGTAGGA+AGG | - | chr7.1:33465436-33465455 | None:intergenic | 40.0% | |
| AGAGATGACCAATACCACAA+GGG | - | chr7.1:33466425-33466444 | None:intergenic | 40.0% | |
| AGGAATATAAGGCGAGTCTT+TGG | - | chr7.1:33466920-33466939 | None:intergenic | 40.0% | |
| ATGATTGACCCTTGTGGTAT+TGG | + | chr7.1:33466414-33466433 | MS.gene84197:intron | 40.0% | |
| ATTCCCGTAAAGTGGTGTAA+TGG | + | chr7.1:33465800-33465819 | MS.gene84197:intron | 40.0% | |
| ATTTCCGTAAAGTGGTGTAG+TGG | + | chr7.1:33465686-33465705 | MS.gene84197:intron | 40.0% | |
| GACGTTACTACGGTTTAAAG+AGG | - | chr7.1:33465194-33465213 | None:intergenic | 40.0% | |
| GAGGACAACTGAGGAATATA+AGG | - | chr7.1:33466931-33466950 | None:intergenic | 40.0% | |
| GATGACATCTAGTCCAATGT+AGG | - | chr7.1:33465440-33465459 | None:intergenic | 40.0% | |
| GTCAGTGACACGCAAATAAA+AGG | + | chr7.1:33466953-33466972 | MS.gene84197:CDS | 40.0% | |
| GTGTGATGCTATGAACATCA+AGG | + | chr7.1:33467223-33467242 | MS.gene84197:CDS | 40.0% | |
| GTTGGATCCAATGGATGAAT+TGG | - | chr7.1:33467536-33467555 | None:intergenic | 40.0% | |
| TACACCACTTTACGGGAATT+TGG | - | chr7.1:33465799-33465818 | None:intergenic | 40.0% | |
| TAGAGATGACCAATACCACA+AGG | - | chr7.1:33466426-33466445 | None:intergenic | 40.0% | |
| TATTCCTCCAATGGTACATG+AGG | - | chr7.1:33466536-33466555 | None:intergenic | 40.0% | |
| TCAACCTACATCAAATCCAG+TGG | - | chr7.1:33466018-33466037 | None:intergenic | 40.0% | |
| TGAGCCATTACACCACTTTA+CGG | - | chr7.1:33465807-33465826 | None:intergenic | 40.0% | |
| TGATCCAAATTCCCGTAAAG+TGG | + | chr7.1:33465792-33465811 | MS.gene84197:intron | 40.0% | |
| TTGACAATGATTGACCCTTG+TGG | + | chr7.1:33466408-33466427 | MS.gene84197:intron | 40.0% | |
| TTGCCCTTATGAACCACAAA+GGG | - | chr7.1:33465267-33465286 | None:intergenic | 40.0% | |
| TTTGCCCTTATGAACCACAA+AGG | - | chr7.1:33465268-33465287 | None:intergenic | 40.0% | |
| ! | GGCGGAGCTAGAAAATATTT+TGG | - | chr7.1:33465997-33466016 | None:intergenic | 40.0% |
| ! | TCTCATTTTCCTCATCCAAG+TGG | + | chr7.1:33466503-33466522 | MS.gene84197:CDS | 40.0% |
| ! | TTTATTTGCGTGTCACTGAC+GGG | - | chr7.1:33466953-33466972 | None:intergenic | 40.0% |
| !! | ACATCAAGGCCATTGATTTG+TGG | + | chr7.1:33467237-33467256 | MS.gene84197:CDS | 40.0% |
| !! | AGGTATTGAGAATCCGATTG+TGG | + | chr7.1:33466109-33466128 | MS.gene84197:intron | 40.0% |
| !! | TACATGAAGAGTGCCACAAT+CGG | - | chr7.1:33466125-33466144 | None:intergenic | 40.0% |
| !!! | TTTGTGTCGGTTTTAGGTGT+CGG | + | chr7.1:33465654-33465673 | MS.gene84197:intron | 40.0% |
| AAGTAGACAATGGCCAATGC+TGG | - | chr7.1:33466470-33466489 | None:intergenic | 45.0% | |
| ACCTACATCAAATCCAGTGG+CGG | - | chr7.1:33466015-33466034 | None:intergenic | 45.0% | |
| ATTCCCTCACGACAAAGAGT+GGG | + | chr7.1:33467583-33467602 | MS.gene84197:CDS | 45.0% | |
| GAGCCATTACACCACTTTAC+GGG | - | chr7.1:33465806-33465825 | None:intergenic | 45.0% | |
| GGAAACATTTCTCTGCTGAG+GGG | + | chr7.1:33467399-33467418 | MS.gene84197:CDS | 45.0% | |
| GGGAAACATTTCTCTGCTGA+GGG | + | chr7.1:33467398-33467417 | MS.gene84197:CDS | 45.0% | |
| GTCGTGAGGGAATGGAATAT+TGG | - | chr7.1:33467576-33467595 | None:intergenic | 45.0% | |
| TGCTTTCCCGAATTCATCAC+TGG | - | chr7.1:33467153-33467172 | None:intergenic | 45.0% | |
| TGGGAAACATTTCTCTGCTG+AGG | + | chr7.1:33467397-33467416 | MS.gene84197:CDS | 45.0% | |
| TTGGCCATTGTCTACTTTGG+TGG | + | chr7.1:33466473-33466492 | MS.gene84197:CDS | 45.0% | |
| ! | GATACGCTGGTTGGAATTCA+AGG | + | chr7.1:33466052-33466071 | MS.gene84197:CDS | 45.0% |
| ! | GCATTGGCCATTGTCTACTT+TGG | + | chr7.1:33466470-33466489 | MS.gene84197:CDS | 45.0% |
| ! | GGGGAGTGAAATGGTGTTAA+AGG | + | chr7.1:33467418-33467437 | MS.gene84197:CDS | 45.0% |
| !!! | ATATTTTCTAGCTCCGCCAC+TGG | + | chr7.1:33465999-33466018 | MS.gene84197:intron | 45.0% |
| !! | AATTTAAATAATTCAATTAT+AGG | + | chr7.1:33465720-33465739 | MS.gene84197:intron | 5.0% |
| !!! | ATTGAATTATTTAAATTTTT+TGG | - | chr7.1:33465717-33465736 | None:intergenic | 5.0% |
| !!! | TTGAATTATTTAAATTTTTT+GGG | - | chr7.1:33465716-33465735 | None:intergenic | 5.0% |
| AAGGCGTGGTCTACAAGTTG+TGG | + | chr7.1:33466071-33466090 | MS.gene84197:CDS | 50.0% | |
| ACTCCCACTCTTTGTCGTGA+GGG | - | chr7.1:33467589-33467608 | None:intergenic | 50.0% | |
| ATCAGAGGCGGAGATAGTCA+TGG | + | chr7.1:33465553-33465572 | MS.gene84197:intron | 50.0% | |
| CACTCTTTGTCGTGAGGGAA+TGG | - | chr7.1:33467584-33467603 | None:intergenic | 50.0% | |
| CATTCCCTCACGACAAAGAG+TGG | + | chr7.1:33467582-33467601 | MS.gene84197:CDS | 50.0% | |
| CCAATGGTACATGAGGACCA+AGG | - | chr7.1:33466529-33466548 | None:intergenic | 50.0% | |
| CCTTGGTCCTCATGTACCAT+TGG | + | chr7.1:33466526-33466545 | MS.gene84197:CDS | 50.0% | |
| GCGACAAAGCCTTCCTACAT+TGG | + | chr7.1:33465424-33465443 | MS.gene84197:intron | 50.0% | |
| TACTCCCACTCTTTGTCGTG+AGG | - | chr7.1:33467590-33467609 | None:intergenic | 50.0% | |
| TCAGAGGCGGAGATAGTCAT+GGG | + | chr7.1:33465554-33465573 | MS.gene84197:intron | 50.0% | |
| TCCGCCACTGGATTTGATGT+AGG | + | chr7.1:33466011-33466030 | MS.gene84197:intron | 50.0% | |
| TGCCATTGAGCAACCAGCAT+TGG | + | chr7.1:33466454-33466473 | MS.gene84197:CDS | 50.0% | |
| TGCTCACTTGTACGCTCGTA+AGG | + | chr7.1:33465157-33465176 | MS.gene84197:CDS | 50.0% | |
| TGGGCCACTACACCACTTTA+CGG | - | chr7.1:33465693-33465712 | None:intergenic | 50.0% | |
| TGGTCCTCATGTACCATTGG+AGG | + | chr7.1:33466529-33466548 | MS.gene84197:CDS | 50.0% | |
| TTTCCTCATCCAAGTGGCCT+TGG | + | chr7.1:33466509-33466528 | MS.gene84197:CDS | 50.0% | |
| ! | AGATAGTCATGGGCTGAGGT+GGG | + | chr7.1:33465564-33465583 | MS.gene84197:intron | 50.0% |
| !! | ATAGTTTTGCGGGGATACGC+TGG | + | chr7.1:33466039-33466058 | MS.gene84197:CDS | 50.0% |
| ACATGAGGACCAAGGCCACT+TGG | - | chr7.1:33466521-33466540 | None:intergenic | 55.0% | |
| CTCTGCTGAGGGGAGTGAAA+TGG | + | chr7.1:33467409-33467428 | MS.gene84197:CDS | 55.0% | |
| GCTGGTTGGAATTCAAGGCG+TGG | + | chr7.1:33466057-33466076 | MS.gene84197:CDS | 55.0% | |
| ! | ATTTGCGTGTCACTGACGGG+AGG | - | chr7.1:33466950-33466969 | None:intergenic | 55.0% |
| ! | GAGATAGTCATGGGCTGAGG+TGG | + | chr7.1:33465563-33465582 | MS.gene84197:intron | 55.0% |
| ! | GGCCAATGCTGGTTGCTCAA+TGG | - | chr7.1:33466459-33466478 | None:intergenic | 55.0% |
| ! | TTTTGCGGGGATACGCTGGT+TGG | + | chr7.1:33466043-33466062 | MS.gene84197:CDS | 55.0% |
| !! | TAATTTTTGGGGGTGGGCCG+TGG | - | chr7.1:33465590-33465609 | None:intergenic | 55.0% |
| CACTGACGGGAGGACAACTG+AGG | - | chr7.1:33466940-33466959 | None:intergenic | 60.0% | |
| GGACCAAGGCCACTTGGATG+AGG | - | chr7.1:33466515-33466534 | None:intergenic | 60.0% | |
| ! | GCGGAGATAGTCATGGGCTG+AGG | + | chr7.1:33465560-33465579 | MS.gene84197:intron | 60.0% |
| ! | TCATGGGCTGAGGTGGGCCA+CGG | + | chr7.1:33465570-33465589 | MS.gene84197:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 33465080 | 33467610 | 33465080 | ID=MS.gene84197 |
| chr7.1 | mRNA | 33465080 | 33467610 | 33465080 | ID=MS.gene84197.t1;Parent=MS.gene84197 |
| chr7.1 | exon | 33465080 | 33465178 | 33465080 | ID=MS.gene84197.t1.exon1;Parent=MS.gene84197.t1 |
| chr7.1 | CDS | 33465080 | 33465178 | 33465080 | ID=cds.MS.gene84197.t1;Parent=MS.gene84197.t1 |
| chr7.1 | exon | 33466033 | 33466110 | 33466033 | ID=MS.gene84197.t1.exon2;Parent=MS.gene84197.t1 |
| chr7.1 | CDS | 33466033 | 33466110 | 33466033 | ID=cds.MS.gene84197.t1;Parent=MS.gene84197.t1 |
| chr7.1 | exon | 33466452 | 33466592 | 33466452 | ID=MS.gene84197.t1.exon3;Parent=MS.gene84197.t1 |
| chr7.1 | CDS | 33466452 | 33466592 | 33466452 | ID=cds.MS.gene84197.t1;Parent=MS.gene84197.t1 |
| chr7.1 | exon | 33466908 | 33466981 | 33466908 | ID=MS.gene84197.t1.exon4;Parent=MS.gene84197.t1 |
| chr7.1 | CDS | 33466908 | 33466981 | 33466908 | ID=cds.MS.gene84197.t1;Parent=MS.gene84197.t1 |
| chr7.1 | exon | 33467154 | 33467303 | 33467154 | ID=MS.gene84197.t1.exon5;Parent=MS.gene84197.t1 |
| chr7.1 | CDS | 33467154 | 33467303 | 33467154 | ID=cds.MS.gene84197.t1;Parent=MS.gene84197.t1 |
| chr7.1 | exon | 33467394 | 33467610 | 33467394 | ID=MS.gene84197.t1.exon6;Parent=MS.gene84197.t1 |
| chr7.1 | CDS | 33467394 | 33467610 | 33467394 | ID=cds.MS.gene84197.t1;Parent=MS.gene84197.t1 |
| Gene Sequence |
| Protein sequence |
