Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84279.t1 | XP_013444787.1 | 92.6 | 528 | 33 | 1 | 1 | 528 | 1 | 522 | 6.00E-218 | 766.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84279.t1 | Q0DYP5 | 50.5 | 319 | 154 | 3 | 201 | 519 | 114 | 428 | 6.3e-83 | 309.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84279.t1 | A0A072TN24 | 92.6 | 528 | 33 | 1 | 1 | 528 | 1 | 522 | 4.3e-218 | 766.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056825 | MS.gene84279 | 0.845997 | 2.86E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84279.t1 | MTR_8g028700 | 93.561 | 528 | 28 | 1 | 1 | 528 | 1 | 522 | 0.0 | 1026 |
| MS.gene84279.t1 | MTR_8g032850 | 69.956 | 456 | 100 | 5 | 108 | 528 | 454 | 907 | 0.0 | 647 |
| MS.gene84279.t1 | MTR_8g032850 | 54.128 | 436 | 140 | 11 | 19 | 407 | 17 | 439 | 2.05e-134 | 412 |
| MS.gene84279.t1 | MTR_6g465150 | 53.727 | 322 | 145 | 3 | 200 | 521 | 113 | 430 | 2.28e-127 | 379 |
| MS.gene84279.t1 | MTR_1g021590 | 26.936 | 297 | 186 | 11 | 229 | 517 | 104 | 377 | 4.61e-18 | 87.4 |
| MS.gene84279.t1 | MTR_4g068457 | 25.566 | 309 | 198 | 12 | 220 | 517 | 113 | 400 | 1.17e-14 | 77.0 |
| MS.gene84279.t1 | MTR_5g087680 | 31.220 | 205 | 122 | 8 | 284 | 478 | 204 | 399 | 3.37e-14 | 75.5 |
| MS.gene84279.t1 | MTR_5g018520 | 23.707 | 232 | 144 | 6 | 317 | 517 | 136 | 365 | 3.01e-13 | 72.4 |
| MS.gene84279.t1 | MTR_2g436510 | 24.898 | 245 | 166 | 9 | 290 | 527 | 184 | 417 | 2.74e-12 | 69.3 |
| MS.gene84279.t1 | MTR_1g072140 | 26.054 | 261 | 134 | 9 | 227 | 432 | 59 | 315 | 7.24e-12 | 67.0 |
| MS.gene84279.t1 | MTR_8g089650 | 26.906 | 223 | 127 | 9 | 236 | 429 | 211 | 426 | 9.97e-12 | 67.4 |
| MS.gene84279.t1 | MTR_4g119620 | 24.545 | 220 | 147 | 7 | 228 | 433 | 111 | 325 | 1.47e-11 | 66.2 |
| MS.gene84279.t1 | MTR_4g106480 | 26.818 | 220 | 131 | 9 | 236 | 429 | 179 | 394 | 4.92e-11 | 65.1 |
| MS.gene84279.t1 | MTR_4g104410 | 26.147 | 218 | 133 | 10 | 236 | 429 | 148 | 361 | 8.94e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84279.t1 | AT4G25440 | 52.795 | 322 | 148 | 3 | 200 | 521 | 107 | 424 | 4.44e-120 | 360 |
| MS.gene84279.t1 | AT4G25440 | 52.795 | 322 | 148 | 3 | 200 | 521 | 107 | 424 | 4.44e-120 | 360 |
| MS.gene84279.t1 | AT4G25440 | 52.795 | 322 | 148 | 3 | 200 | 521 | 107 | 424 | 4.44e-120 | 360 |
| MS.gene84279.t1 | AT5G51980 | 47.453 | 373 | 177 | 5 | 156 | 521 | 71 | 431 | 1.21e-119 | 359 |
| MS.gene84279.t1 | AT5G51980 | 47.453 | 373 | 177 | 5 | 156 | 521 | 71 | 431 | 1.21e-119 | 359 |
| MS.gene84279.t1 | AT5G49200 | 50.156 | 321 | 153 | 5 | 200 | 516 | 94 | 411 | 4.76e-106 | 324 |
| MS.gene84279.t1 | AT5G40880 | 47.879 | 330 | 168 | 3 | 196 | 524 | 117 | 443 | 4.89e-103 | 317 |
| MS.gene84279.t1 | AT5G40880 | 47.879 | 330 | 168 | 3 | 196 | 524 | 146 | 472 | 1.32e-102 | 317 |
| MS.gene84279.t1 | AT1G49450 | 26.642 | 274 | 157 | 11 | 281 | 517 | 137 | 403 | 7.47e-18 | 86.7 |
| MS.gene84279.t1 | AT3G50390 | 24.422 | 303 | 193 | 11 | 227 | 517 | 91 | 369 | 8.39e-18 | 86.7 |
| MS.gene84279.t1 | AT3G18950 | 24.908 | 273 | 163 | 10 | 281 | 517 | 141 | 407 | 4.45e-16 | 81.3 |
| MS.gene84279.t1 | AT1G47610 | 25.161 | 310 | 190 | 11 | 223 | 517 | 10 | 292 | 3.93e-15 | 77.4 |
| MS.gene84279.t1 | AT2G26490 | 30.180 | 222 | 127 | 9 | 236 | 434 | 205 | 421 | 1.12e-13 | 73.6 |
| MS.gene84279.t1 | AT2G26490 | 23.373 | 338 | 225 | 12 | 190 | 517 | 51 | 364 | 5.76e-13 | 71.6 |
| MS.gene84279.t1 | AT4G15900 | 25.714 | 245 | 164 | 8 | 290 | 527 | 190 | 423 | 1.38e-12 | 70.5 |
| MS.gene84279.t1 | AT3G16650 | 25.957 | 235 | 157 | 9 | 290 | 518 | 184 | 407 | 1.97e-12 | 69.7 |
| MS.gene84279.t1 | AT3G49660 | 24.771 | 218 | 147 | 6 | 228 | 433 | 104 | 316 | 7.86e-12 | 67.0 |
| MS.gene84279.t1 | AT4G02730 | 27.236 | 246 | 156 | 10 | 204 | 432 | 93 | 332 | 1.94e-11 | 65.9 |
| MS.gene84279.t1 | AT1G24130 | 25.114 | 219 | 138 | 7 | 236 | 429 | 191 | 408 | 2.08e-11 | 66.2 |
| MS.gene84279.t1 | AT2G22040 | 23.830 | 235 | 145 | 8 | 230 | 442 | 77 | 299 | 2.31e-11 | 65.5 |
| MS.gene84279.t1 | AT1G21651 | 28.947 | 190 | 115 | 8 | 252 | 430 | 628 | 808 | 5.77e-11 | 65.9 |
Find 0 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATTTTTATTTAAATCAC+AGG | - | 56982:9885-9904 | MS.gene84279:CDS | 15.0% |
| !!! | TTTTTATTCTGATTATTACA+GGG | - | 56982:10500-10519 | MS.gene84279:CDS | 15.0% |
| !!! | TTTTTTATTCTGATTATTAC+AGG | - | 56982:10499-10518 | MS.gene84279:CDS | 15.0% |
| !! | AAAATATACTATACAACTAG+TGG | + | 56982:9816-9835 | None:intergenic | 20.0% |
| !! | AAACAATAGAAATACCTTAA+TGG | + | 56982:10055-10074 | None:intergenic | 20.0% |
| !! | AAACATTTCTCAAAAACATA+AGG | + | 56982:9260-9279 | None:intergenic | 20.0% |
| !! | ATTTCTATTGTTTGGAAATA+CGG | - | 56982:10062-10081 | MS.gene84279:intron | 20.0% |
| !! | TATTTATGTTGAACATCATT+TGG | - | 56982:10431-10450 | MS.gene84279:CDS | 20.0% |
| !! | TTTGTTTGTAGTGAATAAAT+TGG | - | 56982:10460-10479 | MS.gene84279:CDS | 20.0% |
| !!! | AATATTATAGGCTTATTTTC+TGG | + | 56982:10554-10573 | None:intergenic | 20.0% |
| !!! | ATTAAGGTATTTCTATTGTT+TGG | - | 56982:10054-10073 | MS.gene84279:intron | 20.0% |
| !!! | TATCTTTTATTGTTTTATCC+AGG | - | 56982:10176-10195 | MS.gene84279:CDS | 20.0% |
| !!! | TTTTTATTTAAATCACAGGA+TGG | - | 56982:9889-9908 | MS.gene84279:CDS | 20.0% |
| ! | CAAAATCAGCTTTCAAATTA+TGG | + | 56982:9600-9619 | None:intergenic | 25.0% |
| ! | TTTGTAGTGAATAAATTGGT+AGG | - | 56982:10464-10483 | MS.gene84279:CDS | 25.0% |
| !! | TTTGAGAAATGTTTGAAACT+AGG | - | 56982:9266-9285 | MS.gene84279:intron | 25.0% |
| !!! | AATTTACATTCGTGGTTTTA+TGG | - | 56982:9159-9178 | MS.gene84279:intron | 25.0% |
| !!! | TTATTGTTTTATCCAGGTTT+GGG | - | 56982:10182-10201 | MS.gene84279:CDS | 25.0% |
| !!! | TTTATTGTTTTATCCAGGTT+TGG | - | 56982:10181-10200 | MS.gene84279:CDS | 25.0% |
| AAAACCACGAATGTAAATTC+TGG | + | 56982:9158-9177 | None:intergenic | 30.0% | |
| AACAACCATAAAGCAATATG+TGG | + | 56982:9759-9778 | None:intergenic | 30.0% | |
| AAGTTTACATGACAACATGA+TGG | + | 56982:10644-10663 | None:intergenic | 30.0% | |
| ACAACCATAAAGCAATATGT+GGG | + | 56982:9758-9777 | None:intergenic | 30.0% | |
| CATTTCTCAAAAACATAAGG+TGG | + | 56982:9257-9276 | None:intergenic | 30.0% | |
| CTTCGTATTATGTTTGGAAA+GGG | + | 56982:8929-8948 | None:intergenic | 30.0% | |
| TATACATAGCATTTGTGCAT+AGG | - | 56982:10395-10414 | MS.gene84279:CDS | 30.0% | |
| TCATACCAACAAAAATCCAT+GGG | + | 56982:9496-9515 | None:intergenic | 30.0% | |
| TCTCATCTATGAATCATCTT+TGG | - | 56982:10087-10106 | MS.gene84279:intron | 30.0% | |
| TCTTCGTATTATGTTTGGAA+AGG | + | 56982:8930-8949 | None:intergenic | 30.0% | |
| TTCAGTATTATGTTTGGGAA+GGG | + | 56982:9010-9029 | None:intergenic | 30.0% | |
| TTCATACCAACAAAAATCCA+TGG | + | 56982:9497-9516 | None:intergenic | 30.0% | |
| ! | ATGGATTTTTGTTGGTATGA+AGG | - | 56982:9496-9515 | MS.gene84279:intron | 30.0% |
| ! | ATTTTTGAACAGCTTATCAC+TGG | - | 56982:9332-9351 | MS.gene84279:CDS | 30.0% |
| AACCAGTTTAAAAGGGGAAT+TGG | + | 56982:9947-9966 | None:intergenic | 35.0% | |
| AATCTACAGATTTGCAGAGA+GGG | - | 56982:10708-10727 | MS.gene84279:CDS | 35.0% | |
| AATGCAACAGAAATCCTTGT+AGG | - | 56982:8587-8606 | MS.gene84279:CDS | 35.0% | |
| ACAGTCTTGAATAGAAAGGT+TGG | - | 56982:8868-8887 | MS.gene84279:intron | 35.0% | |
| ACTACCCACATATTGCTTTA+TGG | - | 56982:9751-9770 | MS.gene84279:intron | 35.0% | |
| ACTGTCTTGAATAGAAAGAC+TGG | - | 56982:8949-8968 | MS.gene84279:intron | 35.0% | |
| AGAACTTGTCCCAACAAATA+AGG | + | 56982:10266-10285 | None:intergenic | 35.0% | |
| AGCATTATGATATCCAGTGT+TGG | + | 56982:8656-8675 | None:intergenic | 35.0% | |
| AGTAGAACTGAACAAGTCAT+CGG | - | 56982:8535-8554 | MS.gene84279:CDS | 35.0% | |
| AGTGATGCAACCAGTTTAAA+AGG | + | 56982:9955-9974 | None:intergenic | 35.0% | |
| CATCTATGAATCATCTTTGG+TGG | - | 56982:10090-10109 | MS.gene84279:intron | 35.0% | |
| CCAATCTTTCTATTCAAGAC+CGG | + | 56982:9033-9052 | None:intergenic | 35.0% | |
| CCTATAATATTCTGTTCAGC+CGG | - | 56982:10563-10582 | MS.gene84279:CDS | 35.0% | |
| CTTGAAATGTAATCTTGAGC+TGG | - | 56982:10661-10680 | MS.gene84279:CDS | 35.0% | |
| GAAATGGTTGGAAGAATACA+AGG | - | 56982:10825-10844 | MS.gene84279:CDS | 35.0% | |
| GAACTTGTCCCAACAAATAA+GGG | + | 56982:10265-10284 | None:intergenic | 35.0% | |
| GAAGACAGTCTTGAATAGAA+AGG | - | 56982:8864-8883 | MS.gene84279:intron | 35.0% | |
| GACAGTCTTCGTATTATGTT+TGG | + | 56982:8935-8954 | None:intergenic | 35.0% | |
| GGATCAGACAAACTTTATTC+TGG | - | 56982:9371-9390 | MS.gene84279:CDS | 35.0% | |
| GGTAGCAAATTTACTTACGA+TGG | + | 56982:10617-10636 | None:intergenic | 35.0% | |
| GTAGTGAATAAATTGGTAGG+AGG | - | 56982:10467-10486 | MS.gene84279:CDS | 35.0% | |
| GTGATGCAACCAGTTTAAAA+GGG | + | 56982:9954-9973 | None:intergenic | 35.0% | |
| GTTCAGTATTATGTTTGGGA+AGG | + | 56982:9011-9030 | None:intergenic | 35.0% | |
| TAAAGTTTGTCTGATCCATC+CGG | + | 56982:9368-9387 | None:intergenic | 35.0% | |
| TATCACTGGAATGACAATTC+CGG | - | 56982:9346-9365 | MS.gene84279:CDS | 35.0% | |
| TCCCAAACATAATACTGAAC+CGG | - | 56982:9011-9030 | MS.gene84279:CDS | 35.0% | |
| TCGGGAAAACATGTGTTTAT+TGG | - | 56982:8554-8573 | MS.gene84279:CDS | 35.0% | |
| TCTCATACACATACGATGAA+TGG | + | 56982:8774-8793 | None:intergenic | 35.0% | |
| TGATGCAACCAGTTTAAAAG+GGG | + | 56982:9953-9972 | None:intergenic | 35.0% | |
| TGTCATTGTGGTATTTGTGA+AGG | - | 56982:9618-9637 | MS.gene84279:intron | 35.0% | |
| TTAGGTCCATCAAGAGTAAA+AGG | + | 56982:9667-9686 | None:intergenic | 35.0% | |
| TTGTACACTCAAATGTGTCA+AGG | + | 56982:10209-10228 | None:intergenic | 35.0% | |
| ! | ACCGGTTCAGTATTATGTTT+GGG | + | 56982:9015-9034 | None:intergenic | 35.0% |
| ! | TAAGAGTGTATGAGTATCCT+TGG | + | 56982:9716-9735 | None:intergenic | 35.0% |
| ! | TTTAAAAGGGGAATTGGCTT+CGG | + | 56982:9941-9960 | None:intergenic | 35.0% |
| ! | TTTACTCTTGATGGACCTAA+GGG | - | 56982:9667-9686 | MS.gene84279:CDS | 35.0% |
| !! | GAAAGCTGATTTTGTCATTG+TGG | - | 56982:9606-9625 | MS.gene84279:intron | 35.0% |
| !! | TTTTACTCTTGATGGACCTA+AGG | - | 56982:9666-9685 | MS.gene84279:CDS | 35.0% |
| !!! | ATTCGTGGTTTTATGGTGAT+GGG | - | 56982:9166-9185 | MS.gene84279:intron | 35.0% |
| AAACTGGTTGCATCACTATG+TGG | - | 56982:9958-9977 | MS.gene84279:CDS | 40.0% | |
| AAGATTGGAGATGACAGAGA+TGG | - | 56982:9045-9064 | MS.gene84279:CDS | 40.0% | |
| ACCCAGTATTTGCAGATACT+CGG | + | 56982:9105-9124 | None:intergenic | 40.0% | |
| ACCGAGTATCTGCAAATACT+GGG | - | 56982:9101-9120 | MS.gene84279:CDS | 40.0% | |
| AGACTGTCTTCGCATTATGT+TGG | + | 56982:8855-8874 | None:intergenic | 40.0% | |
| AGATGTTGTATTCAGGATCC+AGG | - | 56982:10022-10041 | MS.gene84279:intron | 40.0% | |
| AGATTGGAGATGACAGAGAT+GGG | - | 56982:9046-9065 | MS.gene84279:CDS | 40.0% | |
| AGGATGGTGTAATTTCTGCA+TGG | - | 56982:9905-9924 | MS.gene84279:CDS | 40.0% | |
| AGTGCCAGAATTTACATTCG+TGG | - | 56982:9151-9170 | MS.gene84279:CDS | 40.0% | |
| AGTGGCATATTCACACAATG+TGG | - | 56982:10350-10369 | MS.gene84279:CDS | 40.0% | |
| AGTTACCTCTTTGATCAGTG+AGG | - | 56982:9469-9488 | MS.gene84279:intron | 40.0% | |
| ATCCAGGGATCAAACCATTA+AGG | - | 56982:10038-10057 | MS.gene84279:intron | 40.0% | |
| ATCTACAGATTTGCAGAGAG+GGG | - | 56982:10709-10728 | MS.gene84279:CDS | 40.0% | |
| CAAACTTTATTCTGGCAGCA+CGG | - | 56982:9379-9398 | MS.gene84279:CDS | 40.0% | |
| CAATCTACAGATTTGCAGAG+AGG | - | 56982:10707-10726 | MS.gene84279:CDS | 40.0% | |
| CATCAACACATTGACCAGTA+CGG | + | 56982:9430-9449 | None:intergenic | 40.0% | |
| CCGGCTGAACAGAATATTAT+AGG | + | 56982:10566-10585 | None:intergenic | 40.0% | |
| CCGGTCTTGAATAGAAAGAT+TGG | - | 56982:9030-9049 | MS.gene84279:CDS | 40.0% | |
| CTCTCTGCAAATCTGTAGAT+TGG | + | 56982:10709-10728 | None:intergenic | 40.0% | |
| CTGTTTGCAAAGGAAGAAGT+TGG | - | 56982:10736-10755 | MS.gene84279:CDS | 40.0% | |
| CTTCGTGTTAGGTTTAGGAA+GGG | + | 56982:8800-8819 | None:intergenic | 40.0% | |
| GATACTCATACACTCTTAGC+TGG | - | 56982:9718-9737 | MS.gene84279:intron | 40.0% | |
| GATGTTGTATTCAGGATCCA+GGG | - | 56982:10023-10042 | MS.gene84279:intron | 40.0% | |
| GCACTATGAAGAAACCTACA+AGG | + | 56982:8604-8623 | None:intergenic | 40.0% | |
| GGATCCTGAATACAACATCT+TGG | + | 56982:10022-10041 | None:intergenic | 40.0% | |
| GGCAAACAACAGATTTAGTG+TGG | + | 56982:9984-10003 | None:intergenic | 40.0% | |
| GTAGAACTGAACAAGTCATC+GGG | - | 56982:8536-8555 | MS.gene84279:CDS | 40.0% | |
| GTGAATGACAGTTGTGTTCA+TGG | - | 56982:9123-9142 | MS.gene84279:CDS | 40.0% | |
| GTTACCTCTTTGATCAGTGA+GGG | - | 56982:9470-9489 | MS.gene84279:intron | 40.0% | |
| GTTGGAAGAATACAAGGTTG+AGG | - | 56982:10831-10850 | MS.gene84279:CDS | 40.0% | |
| TACCTTAATGGTTTGATCCC+TGG | + | 56982:10043-10062 | None:intergenic | 40.0% | |
| TCCTCAATAGCAAAGCTTGA+GGG | - | 56982:9192-9211 | MS.gene84279:intron | 40.0% | |
| TTAGTAGATATATCCCCAGG+TGG | - | 56982:10760-10779 | MS.gene84279:CDS | 40.0% | |
| TTCCTCAATAGCAAAGCTTG+AGG | - | 56982:9191-9210 | MS.gene84279:intron | 40.0% | |
| TTCGTGTTAGGTTTAGGAAG+GGG | + | 56982:8799-8818 | None:intergenic | 40.0% | |
| TTGTGGTATTTGTGAAGGCA+TGG | - | 56982:9623-9642 | MS.gene84279:intron | 40.0% | |
| ! | ACATGACAACATGATGGTGT+TGG | + | 56982:10638-10657 | None:intergenic | 40.0% |
| ! | AGCCAATTCCCCTTTTAAAC+TGG | - | 56982:9942-9961 | MS.gene84279:CDS | 40.0% |
| ! | AGTCACCTCCCTTATTTGTT+GGG | - | 56982:10254-10273 | MS.gene84279:CDS | 40.0% |
| ! | ATGTGTTGATGTGACGAATC+TGG | - | 56982:9439-9458 | MS.gene84279:CDS | 40.0% |
| ! | GACCGGTTCAGTATTATGTT+TGG | + | 56982:9016-9035 | None:intergenic | 40.0% |
| ! | GGATTAGTAGATATATCCCC+AGG | - | 56982:10757-10776 | MS.gene84279:CDS | 40.0% |
| ! | TATTTGCAGATACTCGGTGA+AGG | + | 56982:9099-9118 | None:intergenic | 40.0% |
| ! | TCTGGTTTCAAAACGAAGCA+GGG | - | 56982:10319-10338 | MS.gene84279:CDS | 40.0% |
| ! | TGGGACAAGTTCTTGTTATC+CGG | - | 56982:10273-10292 | MS.gene84279:CDS | 40.0% |
| ! | TGTGTTGATGTGACGAATCT+GGG | - | 56982:9440-9459 | MS.gene84279:CDS | 40.0% |
| !!! | CATTCGTGGTTTTATGGTGA+TGG | - | 56982:9165-9184 | MS.gene84279:intron | 40.0% |
| !!! | GTTTTGAAACCAGACCTTGA+TGG | + | 56982:10313-10332 | None:intergenic | 40.0% |
| AAACGACATTACCCTTCGCA+CGG | - | 56982:8682-8701 | MS.gene84279:intron | 45.0% | |
| AAAGCTTGAGGGACACAAGA+AGG | - | 56982:9203-9222 | MS.gene84279:intron | 45.0% | |
| ACTGGAATGACAATTCCGGA+TGG | - | 56982:9350-9369 | MS.gene84279:CDS | 45.0% | |
| ATAGCATGGACTTGTCCCTT+AGG | + | 56982:9685-9704 | None:intergenic | 45.0% | |
| CACCGAGTATCTGCAAATAC+TGG | - | 56982:9100-9119 | MS.gene84279:CDS | 45.0% | |
| CCATGCTATGATTGTTGCCA+AGG | - | 56982:9696-9715 | MS.gene84279:CDS | 45.0% | |
| CCTTCCTAAACCTAACACGA+AGG | - | 56982:8798-8817 | MS.gene84279:CDS | 45.0% | |
| CCTTCGTGTTAGGTTTAGGA+AGG | + | 56982:8801-8820 | None:intergenic | 45.0% | |
| CCTTGGCAACAATCATAGCA+TGG | + | 56982:9699-9718 | None:intergenic | 45.0% | |
| CTTCGCATTATGTTGGCGAA+GGG | + | 56982:8848-8867 | None:intergenic | 45.0% | |
| CTTGTCCCAACAAATAAGGG+AGG | + | 56982:10262-10281 | None:intergenic | 45.0% | |
| GAGGTGAACTGAATTGTCTC+CGG | + | 56982:10585-10604 | None:intergenic | 45.0% | |
| GGCTCCAAGATGTTGTATTC+AGG | - | 56982:10015-10034 | MS.gene84279:intron | 45.0% | |
| GGTGTAATTTCTGCATGGAG+AGG | - | 56982:9910-9929 | MS.gene84279:CDS | 45.0% | |
| TCAAAACGAAGCAGGGACTT+TGG | - | 56982:10326-10345 | MS.gene84279:CDS | 45.0% | |
| TCTTCGCATTATGTTGGCGA+AGG | + | 56982:8849-8868 | None:intergenic | 45.0% | |
| TTCATCTGACTGCACCATCA+AGG | - | 56982:10296-10315 | MS.gene84279:CDS | 45.0% | |
| TTCGCATTATGTTGGCGAAG+GGG | + | 56982:8847-8866 | None:intergenic | 45.0% | |
| TTCTTCACTGGAGACAGAAC+TGG | - | 56982:10787-10806 | MS.gene84279:CDS | 45.0% | |
| TTTATTCTGGCAGCACGGAT+GGG | - | 56982:9384-9403 | MS.gene84279:CDS | 45.0% | |
| ! | CAGTCACCTCCCTTATTTGT+TGG | - | 56982:10253-10272 | MS.gene84279:CDS | 45.0% |
| ! | CTGTTGTTTGCCTAGCTGTT+GGG | - | 56982:9992-10011 | MS.gene84279:CDS | 45.0% |
| ! | GCTGCACCTTTTACTCTTGA+TGG | - | 56982:9658-9677 | MS.gene84279:CDS | 45.0% |
| ! | GTCTGGTTTCAAAACGAAGC+AGG | - | 56982:10318-10337 | MS.gene84279:CDS | 45.0% |
| ! | GTTTGCTGACAGTCTGGAAA+TGG | - | 56982:10809-10828 | MS.gene84279:CDS | 45.0% |
| ! | TCTGTTGTTTGCCTAGCTGT+TGG | - | 56982:9991-10010 | MS.gene84279:CDS | 45.0% |
| ! | TGTTGTTTGCCTAGCTGTTG+GGG | - | 56982:9993-10012 | MS.gene84279:CDS | 45.0% |
| !! | ACATGTGTTTATTGGCTCGC+TGG | - | 56982:8562-8581 | MS.gene84279:CDS | 45.0% |
| !! | AGGGTGTTGTTACACTCTCT+GGG | - | 56982:10519-10538 | MS.gene84279:CDS | 45.0% |
| !! | CATGTGTTTATTGGCTCGCT+GGG | - | 56982:8563-8582 | MS.gene84279:CDS | 45.0% |
| !! | TCCCTCAAGCTTTGCTATTG+AGG | + | 56982:9196-9215 | None:intergenic | 45.0% |
| AGAAGAGCAGCCTACCTTGA+CGG | + | 56982:9525-9544 | None:intergenic | 50.0% | |
| AGACACGACTCAAGTCGTTG+AGG | - | 56982:8900-8919 | MS.gene84279:intron | 50.0% | |
| AGCAAGCACAGAAGTTGCTG+AGG | - | 56982:8981-9000 | MS.gene84279:intron | 50.0% | |
| AGTGAAGAAGAGACCACCTG+GGG | + | 56982:10776-10795 | None:intergenic | 50.0% | |
| ATGAAGGACACCGTCAAGGT+AGG | - | 56982:9512-9531 | MS.gene84279:intron | 50.0% | |
| ATGTGTCAAGGTCCCAAACC+TGG | + | 56982:10197-10216 | None:intergenic | 50.0% | |
| CAGTGAAGAAGAGACCACCT+GGG | + | 56982:10777-10796 | None:intergenic | 50.0% | |
| CATCAGCTCTGCAAGAAGAC+GGG | + | 56982:8723-8742 | None:intergenic | 50.0% | |
| CTTACGATGGCAGTTCGTAG+AGG | + | 56982:10604-10623 | None:intergenic | 50.0% | |
| CTTTATTCTGGCAGCACGGA+TGG | - | 56982:9383-9402 | MS.gene84279:CDS | 50.0% | |
| GAGGGGTAGACTGTTTGCAA+AGG | - | 56982:10726-10745 | MS.gene84279:CDS | 50.0% | |
| GATGGTGCAGTCAGATGAAC+CGG | + | 56982:10295-10314 | None:intergenic | 50.0% | |
| GCAGCCTTCGTGTTAGGTTT+AGG | + | 56982:8805-8824 | None:intergenic | 50.0% | |
| GCATCAGCTCTGCAAGAAGA+CGG | + | 56982:8724-8743 | None:intergenic | 50.0% | |
| GCATTACAGGAAGCAGTTGC+CGG | + | 56982:8631-8650 | None:intergenic | 50.0% | |
| GCTGACAGTCTGGAAATGGT+TGG | - | 56982:10813-10832 | MS.gene84279:CDS | 50.0% | |
| GTTGTTTGCCTAGCTGTTGG+GGG | - | 56982:9994-10013 | MS.gene84279:CDS | 50.0% | |
| GTTTCTTCATAGTGCAGCGC+CGG | - | 56982:8609-8628 | MS.gene84279:CDS | 50.0% | |
| TACACTCTTAGCTGGAGCAG+AGG | - | 56982:9726-9745 | MS.gene84279:intron | 50.0% | |
| TACGATGCAGCCTTCGTGTT+AGG | + | 56982:8811-8830 | None:intergenic | 50.0% | |
| TCCTGTAATGCTGCCAACAC+TGG | - | 56982:8640-8659 | MS.gene84279:intron | 50.0% | |
| TCTTCTTGCAGAGCTGATGC+TGG | - | 56982:8724-8743 | MS.gene84279:intron | 50.0% | |
| TGGTATGAAGGACACCGTCA+AGG | - | 56982:9508-9527 | MS.gene84279:intron | 50.0% | |
| ! | ATGTTGCTTCACCGTGCGAA+GGG | + | 56982:8696-8715 | None:intergenic | 50.0% |
| ! | GAGGGCCCATGGATTTTTGT+TGG | - | 56982:9488-9507 | MS.gene84279:intron | 50.0% |
| !! | CAGGGTGTTGTTACACTCTC+TGG | - | 56982:10518-10537 | MS.gene84279:CDS | 50.0% |
| !! | GAACTGGTTTGCTGACAGTC+TGG | - | 56982:10803-10822 | MS.gene84279:CDS | 50.0% |
| !! | TCCAGTGTTGGCAGCATTAC+AGG | + | 56982:8644-8663 | None:intergenic | 50.0% |
| CCAGGTGGTCTCTTCTTCAC+TGG | - | 56982:10775-10794 | MS.gene84279:CDS | 55.0% | |
| CCAGTGAAGAAGAGACCACC+TGG | + | 56982:10778-10797 | None:intergenic | 55.0% | |
| CTGACTGCACCATCAAGGTC+TGG | - | 56982:10301-10320 | MS.gene84279:CDS | 55.0% | |
| CTTTGATCAGTGAGGGCCCA+TGG | - | 56982:9477-9496 | MS.gene84279:intron | 55.0% | |
| GGATGGGACACTTCGGACAT+GGG | - | 56982:9400-9419 | MS.gene84279:CDS | 55.0% | |
| TGGGCCCTCACTGATCAAAG+AGG | + | 56982:9477-9496 | None:intergenic | 55.0% | |
| ! | CGAAGCAGGGACTTTGGAAG+TGG | - | 56982:10332-10351 | MS.gene84279:CDS | 55.0% |
| ! | GATGTTGCTTCACCGTGCGA+AGG | + | 56982:8697-8716 | None:intergenic | 55.0% |
| CGGATGGGACACTTCGGACA+TGG | - | 56982:9399-9418 | MS.gene84279:CDS | 60.0% | |
| GCAGCACGGATGGGACACTT+CGG | - | 56982:9393-9412 | MS.gene84279:CDS | 60.0% | |
| TCTTGGAGCCCCCAACAGCT+AGG | + | 56982:10005-10024 | None:intergenic | 60.0% | |
| CGGACATGGGACTGCCGTAC+TGG | - | 56982:9413-9432 | MS.gene84279:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 56982 | gene | 8511 | 10864 | 8511 | ID=MS.gene84279 |
| 56982 | mRNA | 8511 | 10864 | 8511 | ID=MS.gene84279.t1;Parent=MS.gene84279 |
| 56982 | exon | 10151 | 10864 | 10151 | ID=MS.gene84279.t1.exon1;Parent=MS.gene84279.t1 |
| 56982 | CDS | 10151 | 10864 | 10151 | ID=cds.MS.gene84279.t1;Parent=MS.gene84279.t1 |
| 56982 | exon | 9846 | 10031 | 9846 | ID=MS.gene84279.t1.exon2;Parent=MS.gene84279.t1 |
| 56982 | CDS | 9846 | 10031 | 9846 | ID=cds.MS.gene84279.t1;Parent=MS.gene84279.t1 |
| 56982 | exon | 9628 | 9735 | 9628 | ID=MS.gene84279.t1.exon3;Parent=MS.gene84279.t1 |
| 56982 | CDS | 9628 | 9735 | 9628 | ID=cds.MS.gene84279.t1;Parent=MS.gene84279.t1 |
| 56982 | exon | 9316 | 9468 | 9316 | ID=MS.gene84279.t1.exon4;Parent=MS.gene84279.t1 |
| 56982 | CDS | 9316 | 9468 | 9316 | ID=cds.MS.gene84279.t1;Parent=MS.gene84279.t1 |
| 56982 | exon | 8998 | 9177 | 8998 | ID=MS.gene84279.t1.exon5;Parent=MS.gene84279.t1 |
| 56982 | CDS | 8998 | 9177 | 8998 | ID=cds.MS.gene84279.t1;Parent=MS.gene84279.t1 |
| 56982 | exon | 8757 | 8854 | 8757 | ID=MS.gene84279.t1.exon6;Parent=MS.gene84279.t1 |
| 56982 | CDS | 8757 | 8854 | 8757 | ID=cds.MS.gene84279.t1;Parent=MS.gene84279.t1 |
| 56982 | exon | 8511 | 8658 | 8511 | ID=MS.gene84279.t1.exon7;Parent=MS.gene84279.t1 |
| 56982 | CDS | 8511 | 8658 | 8511 | ID=cds.MS.gene84279.t1;Parent=MS.gene84279.t1 |
| Gene Sequence |
| Protein sequence |
