Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84358.t1 | XP_003598212.1 | 97.2 | 388 | 11 | 0 | 1 | 388 | 1 | 388 | 4.20E-200 | 707.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84358.t1 | Q9SUW0 | 66.7 | 342 | 113 | 1 | 41 | 382 | 27 | 367 | 1.4e-127 | 457.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84358.t1 | G7IYG6 | 97.2 | 388 | 11 | 0 | 1 | 388 | 1 | 388 | 3.0e-200 | 707.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058404 | MS.gene84358 | 0.90474 | 8.94E-80 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84358.t1 | MTR_3g008500 | 97.165 | 388 | 11 | 0 | 1 | 388 | 1 | 388 | 0.0 | 780 |
| MS.gene84358.t1 | MTR_4g036090 | 73.711 | 388 | 92 | 4 | 1 | 385 | 1 | 381 | 0.0 | 573 |
| MS.gene84358.t1 | MTR_4g036090 | 72.632 | 380 | 92 | 5 | 1 | 375 | 1 | 373 | 0.0 | 547 |
| MS.gene84358.t1 | MTR_4g101600 | 60.622 | 386 | 144 | 5 | 1 | 383 | 1 | 381 | 7.92e-162 | 459 |
| MS.gene84358.t1 | MTR_8g090330 | 52.762 | 362 | 152 | 4 | 25 | 386 | 17 | 359 | 9.43e-131 | 380 |
| MS.gene84358.t1 | MTR_3g074180 | 55.120 | 332 | 127 | 4 | 58 | 388 | 53 | 363 | 3.13e-126 | 368 |
| MS.gene84358.t1 | MTR_5g063080 | 53.538 | 325 | 131 | 3 | 62 | 386 | 69 | 373 | 2.40e-118 | 348 |
| MS.gene84358.t1 | MTR_3g091010 | 54.110 | 292 | 127 | 4 | 95 | 382 | 64 | 352 | 5.78e-110 | 327 |
| MS.gene84358.t1 | MTR_8g027765 | 51.020 | 294 | 143 | 1 | 95 | 387 | 20 | 313 | 7.16e-106 | 315 |
| MS.gene84358.t1 | MTR_8g090330 | 51.195 | 293 | 124 | 4 | 25 | 317 | 17 | 290 | 1.92e-96 | 290 |
| MS.gene84358.t1 | MTR_4g036685 | 58.303 | 271 | 84 | 10 | 70 | 327 | 1 | 255 | 6.43e-89 | 270 |
| MS.gene84358.t1 | MTR_4g128870 | 43.220 | 118 | 36 | 4 | 120 | 237 | 6 | 92 | 5.87e-20 | 84.3 |
| MS.gene84358.t1 | MTR_4g080160 | 28.169 | 284 | 159 | 12 | 114 | 379 | 588 | 844 | 4.75e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84358.t1 | AT4G22590 | 62.042 | 382 | 130 | 2 | 1 | 382 | 1 | 367 | 7.93e-166 | 469 |
| MS.gene84358.t1 | AT5G51460 | 59.949 | 392 | 140 | 6 | 1 | 385 | 1 | 382 | 2.33e-165 | 468 |
| MS.gene84358.t1 | AT5G51460 | 59.949 | 392 | 140 | 6 | 1 | 385 | 1 | 382 | 2.33e-165 | 468 |
| MS.gene84358.t1 | AT5G51460 | 59.796 | 393 | 140 | 7 | 1 | 385 | 1 | 383 | 1.38e-163 | 464 |
| MS.gene84358.t1 | AT5G51460 | 59.796 | 393 | 140 | 7 | 1 | 385 | 1 | 383 | 1.38e-163 | 464 |
| MS.gene84358.t1 | AT5G51460 | 59.796 | 393 | 140 | 7 | 1 | 385 | 1 | 383 | 1.38e-163 | 464 |
| MS.gene84358.t1 | AT4G12430 | 62.042 | 382 | 121 | 4 | 1 | 382 | 1 | 358 | 9.31e-157 | 446 |
| MS.gene84358.t1 | AT1G35910 | 55.172 | 348 | 138 | 4 | 45 | 387 | 32 | 366 | 1.32e-130 | 379 |
| MS.gene84358.t1 | AT4G39770 | 57.321 | 321 | 116 | 2 | 64 | 384 | 45 | 344 | 4.11e-125 | 365 |
| MS.gene84358.t1 | AT5G10100 | 53.704 | 324 | 132 | 3 | 62 | 384 | 58 | 364 | 4.87e-122 | 358 |
| MS.gene84358.t1 | AT5G10100 | 53.704 | 324 | 132 | 3 | 62 | 384 | 69 | 375 | 7.33e-122 | 358 |
| MS.gene84358.t1 | AT1G78090 | 50.000 | 368 | 154 | 7 | 31 | 387 | 23 | 371 | 8.69e-120 | 352 |
| MS.gene84358.t1 | AT5G65140 | 53.560 | 323 | 133 | 2 | 62 | 384 | 62 | 367 | 7.24e-119 | 350 |
| MS.gene84358.t1 | AT4G39770 | 56.958 | 309 | 112 | 2 | 64 | 372 | 45 | 332 | 1.30e-118 | 348 |
| MS.gene84358.t1 | AT2G22190 | 54.688 | 320 | 121 | 2 | 66 | 385 | 55 | 350 | 6.98e-118 | 347 |
| MS.gene84358.t1 | AT1G22210 | 53.894 | 321 | 132 | 2 | 67 | 387 | 14 | 318 | 2.41e-116 | 341 |
| MS.gene84358.t1 | AT5G10100 | 53.376 | 311 | 127 | 3 | 62 | 371 | 58 | 351 | 1.67e-115 | 340 |
| MS.gene84358.t1 | AT1G78090 | 50.142 | 353 | 146 | 7 | 31 | 372 | 23 | 356 | 7.41e-115 | 339 |
| MS.gene84358.t1 | AT2G22190 | 54.221 | 308 | 117 | 2 | 66 | 373 | 55 | 338 | 4.73e-112 | 332 |
| MS.gene84358.t1 | AT5G10100 | 50.309 | 324 | 123 | 4 | 62 | 384 | 69 | 355 | 3.06e-107 | 320 |
| MS.gene84358.t1 | AT5G65140 | 53.214 | 280 | 114 | 2 | 62 | 341 | 62 | 324 | 6.37e-102 | 305 |
| MS.gene84358.t1 | AT5G65140 | 51.953 | 256 | 106 | 2 | 62 | 317 | 62 | 300 | 2.00e-88 | 270 |
| MS.gene84358.t1 | AT1G70290 | 27.143 | 280 | 157 | 13 | 119 | 379 | 545 | 796 | 1.43e-11 | 66.6 |
| MS.gene84358.t1 | AT1G70290 | 27.143 | 280 | 157 | 13 | 119 | 379 | 583 | 834 | 1.66e-11 | 66.6 |
Find 84 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCGATGAAGATGCATTTA+AGG | 0.231051 | 3.1:+4095574 | MS.gene84358:CDS |
| AGCGAGGTTAATAAAGGTTT+TGG | 0.247560 | 3.1:+4095703 | MS.gene84358:CDS |
| CTCGATGATGTTCGTTCTAA+TGG | 0.251756 | 3.1:+4093399 | MS.gene84358:CDS |
| TCAGTAGACCTAATGCAATT+AGG | 0.262806 | 3.1:-4094323 | None:intergenic |
| AAACCGCGTTGCTTTCTTTA+GGG | 0.291548 | 3.1:-4095744 | None:intergenic |
| AGAAAAGTTGAAGTATTTGT+AGG | 0.326919 | 3.1:-4093333 | None:intergenic |
| TAATTTACAGAGTTGGGATT+TGG | 0.331008 | 3.1:+4095127 | MS.gene84358:intron |
| TAAACCGCGTTGCTTTCTTT+AGG | 0.331760 | 3.1:-4095745 | None:intergenic |
| AGTCATGGAATGGACATAAT+TGG | 0.337966 | 3.1:+4094269 | MS.gene84358:CDS |
| GAGGAGCATGATTTGTCTTC+AGG | 0.346590 | 3.1:-4093233 | None:intergenic |
| CAGTAGACCTAATGCAATTA+GGG | 0.349056 | 3.1:-4094322 | None:intergenic |
| CTAGAGTTTCCATCAGCAAT+TGG | 0.374834 | 3.1:+4093629 | MS.gene84358:CDS |
| CGCTCAGGATTGTCAACAAT+TGG | 0.385451 | 3.1:-4093728 | None:intergenic |
| TAGAGTTTCCATCAGCAATT+GGG | 0.394464 | 3.1:+4093630 | MS.gene84358:CDS |
| ATAATCACCCTAATTGCATT+AGG | 0.394713 | 3.1:+4094315 | MS.gene84358:CDS |
| AAGAAAATATCGATGGATAT+TGG | 0.400122 | 3.1:+4093459 | MS.gene84358:CDS |
| CCTTGATCTTGTCCTTGTTA+AGG | 0.404552 | 3.1:-4093274 | None:intergenic |
| ACCAGTGATTGACTGGGATA+AGG | 0.413046 | 3.1:+4095371 | MS.gene84358:CDS |
| TTCCATGACTACCAGCATAA+TGG | 0.413429 | 3.1:-4094256 | None:intergenic |
| CCAGTGATTGACTGGGATAA+GGG | 0.414884 | 3.1:+4095372 | MS.gene84358:CDS |
| CTTCAGGTACATGAATTTGT+TGG | 0.418768 | 3.1:+4094221 | MS.gene84358:intron |
| AGGTTCGACCAGTGATTGAC+TGG | 0.424416 | 3.1:+4095364 | MS.gene84358:CDS |
| AAGGTTAGTAATTTGTTCAA+TGG | 0.426621 | 3.1:-4093654 | None:intergenic |
| ACGATTCCACGGAAGAAGAT+AGG | 0.432313 | 3.1:+4093372 | MS.gene84358:CDS |
| TGATTTGTCTTCAGGTCCAT+TGG | 0.443083 | 3.1:-4093225 | None:intergenic |
| GCAGCATCAGCTTCAGAAGA+TGG | 0.444694 | 3.1:-4093492 | None:intergenic |
| TTCTCAAGTCACTTGTGGTA+TGG | 0.448368 | 3.1:+4095977 | MS.gene84358:CDS |
| TGCTGCTTATTTAACCTGGC+TGG | 0.454459 | 3.1:+4093509 | MS.gene84358:CDS |
| CCCTTATCCCAGTCAATCAC+TGG | 0.457934 | 3.1:-4095372 | None:intergenic |
| ATGCATACCTCATCAATCAT+AGG | 0.460691 | 3.1:-4094514 | None:intergenic |
| TACACTCAGTGAGCAACTTA+CGG | 0.466005 | 3.1:-4094753 | None:intergenic |
| TTCCGCTAATTATTGCAGTC+GGG | 0.470603 | 3.1:-4093917 | None:intergenic |
| CTCCATTATGCTGGTAGTCA+TGG | 0.474044 | 3.1:+4094254 | MS.gene84358:CDS |
| CAAATTACTAACCTTGCAAA+AGG | 0.474768 | 3.1:+4093662 | MS.gene84358:CDS |
| CTGATGCTGCTTATTTAACC+TGG | 0.480480 | 3.1:+4093505 | MS.gene84358:CDS |
| TTTACAGAGTTGGGATTTGG+TGG | 0.481910 | 3.1:+4095130 | MS.gene84358:intron |
| ATGATGTTCGTTCTAATGGT+TGG | 0.487662 | 3.1:+4093403 | MS.gene84358:CDS |
| CATTGTTTCTTGATTACGAT+GGG | 0.487850 | 3.1:+4093696 | MS.gene84358:CDS |
| CTTCCGCTAATTATTGCAGT+CGG | 0.489019 | 3.1:-4093918 | None:intergenic |
| AACCGCGTTGCTTTCTTTAG+GGG | 0.494436 | 3.1:-4095743 | None:intergenic |
| TCAGATACAGACTGTCTAAG+AGG | 0.504048 | 3.1:-4094293 | None:intergenic |
| TTCCCGACTGCAATAATTAG+CGG | 0.504745 | 3.1:+4093915 | MS.gene84358:CDS |
| ACAAGATCAAGGCTCGGCGC+AGG | 0.513806 | 3.1:+4093285 | MS.gene84358:CDS |
| TTCCGTGGAATCGTTAGCGA+TGG | 0.515888 | 3.1:-4093363 | None:intergenic |
| CATTAGGTCTACTGATAAGA+AGG | 0.516416 | 3.1:+4094331 | MS.gene84358:CDS |
| CTCTCTTTGTGATCCTTCAG+AGG | 0.524465 | 3.1:+4095768 | MS.gene84358:CDS |
| TAGCGGAAGAAGTCGAGAAA+AGG | 0.529643 | 3.1:+4093932 | MS.gene84358:CDS |
| AACCTTAAATGCATCTTCAT+CGG | 0.535866 | 3.1:-4095576 | None:intergenic |
| ACCATAAGAATTACCTCTGA+AGG | 0.544685 | 3.1:-4095781 | None:intergenic |
| TACTCACAAGAAAATATCGA+TGG | 0.547593 | 3.1:+4093452 | MS.gene84358:CDS |
| CCATGAGTTAATCGTAAATG+TGG | 0.548944 | 3.1:-4095185 | None:intergenic |
| TCAGACATGAAAGCACGCTC+AGG | 0.550059 | 3.1:-4093743 | None:intergenic |
| TTAACAGATCTCCATTATGC+TGG | 0.550969 | 3.1:+4094245 | MS.gene84358:CDS |
| GATGTGCTAGCTATATATAT+TGG | 0.554483 | 3.1:+4095542 | MS.gene84358:CDS |
| CCTTAACAAGGACAAGATCA+AGG | 0.569283 | 3.1:+4093274 | MS.gene84358:CDS |
| TTATGCTGGTAGTCATGGAA+TGG | 0.572153 | 3.1:+4094259 | MS.gene84358:CDS |
| GGAATTTCTCAAGTCACTTG+TGG | 0.574443 | 3.1:+4095972 | MS.gene84358:CDS |
| GCAGGAATTCAGCAGCAGGT+TGG | 0.579369 | 3.1:-4094492 | None:intergenic |
| ATACCTCATCAATCATAGGC+AGG | 0.580942 | 3.1:-4094510 | None:intergenic |
| TCAATGGCCCCAATTGCTGA+TGG | 0.582170 | 3.1:-4093638 | None:intergenic |
| CTGACACTGCAACCTTAACA+AGG | 0.584321 | 3.1:+4093262 | MS.gene84358:CDS |
| ATATATAGCTAGCACATCAT+CGG | 0.585091 | 3.1:-4095537 | None:intergenic |
| ATAGGCAGGAATTCAGCAGC+AGG | 0.587802 | 3.1:-4094496 | None:intergenic |
| CCACATTTACGATTAACTCA+TGG | 0.588038 | 3.1:+4095185 | MS.gene84358:CDS |
| CTATATATATTGGTGACGAT+CGG | 0.591664 | 3.1:+4095552 | MS.gene84358:CDS |
| CGCGTTGCTTTCTTTAGGGG+CGG | 0.594578 | 3.1:-4095740 | None:intergenic |
| AGAATTCCTATCTTCTTCCG+TGG | 0.605970 | 3.1:-4093378 | None:intergenic |
| ATATCGATGGATATTGGTCA+TGG | 0.606467 | 3.1:+4093465 | MS.gene84358:CDS |
| GCATTGTTTCTTGATTACGA+TGG | 0.607237 | 3.1:+4093695 | MS.gene84358:CDS |
| GTCCATCGCTAACGATTCCA+CGG | 0.607941 | 3.1:+4093361 | MS.gene84358:CDS |
| ACGATTAACTCATGGTCGGA+AGG | 0.614382 | 3.1:+4095193 | MS.gene84358:CDS |
| GTATGTGTTTCATACCAGCC+AGG | 0.620718 | 3.1:-4093523 | None:intergenic |
| GGAGAGCATGACAGACTCGA+AGG | 0.621757 | 3.1:-4093312 | None:intergenic |
| AGAGTTTCCATCAGCAATTG+GGG | 0.624674 | 3.1:+4093631 | MS.gene84358:CDS |
| GAGTGTACAAAAGACATCAA+AGG | 0.636577 | 3.1:+4094769 | MS.gene84358:CDS |
| ACAAGGACAAGATCAAGGCT+CGG | 0.641941 | 3.1:+4093279 | MS.gene84358:CDS |
| ATTTACGATTAACTCATGGT+CGG | 0.654472 | 3.1:+4095189 | MS.gene84358:CDS |
| ATTCCTGCCTATGATTGATG+AGG | 0.658507 | 3.1:+4094507 | MS.gene84358:CDS |
| GTTGCAGTGTCAGCAATGCG+AGG | 0.673341 | 3.1:-4093252 | None:intergenic |
| GGTTCGACCAGTGATTGACT+GGG | 0.682318 | 3.1:+4095365 | MS.gene84358:CDS |
| GCGTGCTGCTGTTAAAAGTG+TGG | 0.708932 | 3.1:+4093884 | MS.gene84358:CDS |
| ACATTATCGCAATGTAGACG+AGG | 0.713352 | 3.1:+4094828 | MS.gene84358:CDS |
| TTATCGCAATGTAGACGAGG+AGG | 0.714342 | 3.1:+4094831 | MS.gene84358:CDS |
| CGCCCCTAAAGAAAGCAACG+CGG | 0.751129 | 3.1:+4095741 | MS.gene84358:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTGTTGATTATATAA+TGG | + | chr3.1:4095432-4095451 | MS.gene84358:intron | 10.0% |
| !!! | TTTTTATAACTGATATAAAA+TGG | + | chr3.1:4095664-4095683 | MS.gene84358:intron | 10.0% |
| !! | AGAAGATTATAAATCAATAT+AGG | - | chr3.1:4094442-4094461 | None:intergenic | 15.0% |
| !! | GAAGATTATAAATCAATATA+GGG | - | chr3.1:4094441-4094460 | None:intergenic | 15.0% |
| !! | TATATCAGTTATAAAAAGTA+AGG | - | chr3.1:4095661-4095680 | None:intergenic | 15.0% |
| !! | TGAAAACAACAAAAAAAAAT+AGG | - | chr3.1:4094917-4094936 | None:intergenic | 15.0% |
| !!! | TATAATCTTCTAAAATTACA+GGG | + | chr3.1:4094451-4094470 | MS.gene84358:intron | 15.0% |
| !!! | TCTAGAATAAAAATTGATAT+AGG | - | chr3.1:4094573-4094592 | None:intergenic | 15.0% |
| !!! | TTATAATCTTCTAAAATTAC+AGG | + | chr3.1:4094450-4094469 | MS.gene84358:intron | 15.0% |
| !! | GAATAATGTTTGTATCATTA+GGG | + | chr3.1:4095894-4095913 | MS.gene84358:intron | 20.0% |
| !! | TGAAAATGAAACTAAATAAG+AGG | - | chr3.1:4095105-4095124 | None:intergenic | 20.0% |
| !! | TTCATATAATTTACAGAGTT+GGG | + | chr3.1:4095121-4095140 | MS.gene84358:intron | 20.0% |
| !! | TTTCATATAATTTACAGAGT+TGG | + | chr3.1:4095120-4095139 | MS.gene84358:intron | 20.0% |
| !!! | GTTAAAAATGGAATCATTTT+AGG | - | chr3.1:4095043-4095062 | None:intergenic | 20.0% |
| !!! | TCATTTTCTCAAATTCTTAT+TGG | + | chr3.1:4094643-4094662 | MS.gene84358:intron | 20.0% |
| ! | AAAAGAGAAAAATGAAGTAC+AGG | - | chr3.1:4093994-4094013 | None:intergenic | 25.0% |
| ! | AAGAAAATATCGATGGATAT+TGG | + | chr3.1:4093459-4093478 | MS.gene84358:CDS | 25.0% |
| ! | AATTGCAACAAAACTTTCAA+AGG | - | chr3.1:4095828-4095847 | None:intergenic | 25.0% |
| ! | ACAAGAGAAGAAAAATAATC+AGG | - | chr3.1:4093825-4093844 | None:intergenic | 25.0% |
| ! | AGCTGCAAAAATTATGAAAA+AGG | - | chr3.1:4093611-4093630 | None:intergenic | 25.0% |
| ! | ATAACAGATGTCTCTTAAAA+AGG | - | chr3.1:4095301-4095320 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+AGG | - | chr3.1:4095920-4095939 | None:intergenic | 25.0% |
| ! | ATTTACATTTCTCTATATGC+AGG | - | chr3.1:4094030-4094049 | None:intergenic | 25.0% |
| ! | GGAATAATGTTTGTATCATT+AGG | + | chr3.1:4095893-4095912 | MS.gene84358:intron | 25.0% |
| ! | TATGAAAAAGGAAACGAATA+AGG | - | chr3.1:4093599-4093618 | None:intergenic | 25.0% |
| ! | TGTAAAAAAATGTTCGTGTT+AGG | + | chr3.1:4094167-4094186 | MS.gene84358:intron | 25.0% |
| ! | TTTGTTTCATAGATTTCTTC+AGG | - | chr3.1:4093960-4093979 | None:intergenic | 25.0% |
| !! | AGAAAAGTTGAAGTATTTGT+AGG | - | chr3.1:4093336-4093355 | None:intergenic | 25.0% |
| !! | ATTTAAGGTTAATATGTTGC+TGG | + | chr3.1:4095589-4095608 | MS.gene84358:intron | 25.0% |
| !! | CTTATTTAAAGTCAAACTTG+TGG | + | chr3.1:4095935-4095954 | MS.gene84358:intron | 25.0% |
| !! | TATGTTTACTGATAATGTTC+AGG | + | chr3.1:4095335-4095354 | MS.gene84358:intron | 25.0% |
| !!! | AAGGTTAGTAATTTGTTCAA+TGG | - | chr3.1:4093657-4093676 | None:intergenic | 25.0% |
| !!! | TCTAGAAGTATCTTTCTAAA+GGG | + | chr3.1:4094414-4094433 | MS.gene84358:intron | 25.0% |
| !!! | TTCTAGAAGTATCTTTCTAA+AGG | + | chr3.1:4094413-4094432 | MS.gene84358:intron | 25.0% |
| AAATAAGGTGCAAAAATGGT+TGG | - | chr3.1:4094201-4094220 | None:intergenic | 30.0% | |
| AACCTTAAATGCATCTTCAT+CGG | - | chr3.1:4095579-4095598 | None:intergenic | 30.0% | |
| AGAAATCATGAACTGAAAAG+TGG | - | chr3.1:4094359-4094378 | None:intergenic | 30.0% | |
| ATAATCACCCTAATTGCATT+AGG | + | chr3.1:4094315-4094334 | MS.gene84358:CDS | 30.0% | |
| ATATATAGCTAGCACATCAT+CGG | - | chr3.1:4095540-4095559 | None:intergenic | 30.0% | |
| ATGTATGTAATATCCTGCAA+AGG | + | chr3.1:4093768-4093787 | MS.gene84358:intron | 30.0% | |
| ATTTACGATTAACTCATGGT+CGG | + | chr3.1:4095189-4095208 | MS.gene84358:CDS | 30.0% | |
| CAAATTACTAACCTTGCAAA+AGG | + | chr3.1:4093662-4093681 | MS.gene84358:CDS | 30.0% | |
| GAAGAAATAAGGTGCAAAAA+TGG | - | chr3.1:4094205-4094224 | None:intergenic | 30.0% | |
| GAGAATCAAAAAGGAAAGAA+GGG | - | chr3.1:4094871-4094890 | None:intergenic | 30.0% | |
| GATGTGCTAGCTATATATAT+TGG | + | chr3.1:4095542-4095561 | MS.gene84358:CDS | 30.0% | |
| TAATTTACAGAGTTGGGATT+TGG | + | chr3.1:4095127-4095146 | MS.gene84358:intron | 30.0% | |
| TACTCACAAGAAAATATCGA+TGG | + | chr3.1:4093452-4093471 | MS.gene84358:CDS | 30.0% | |
| TGTAATACATATGTCAGTGT+TGG | - | chr3.1:4094613-4094632 | None:intergenic | 30.0% | |
| TTCATGTACCTGAAGAAATA+AGG | - | chr3.1:4094216-4094235 | None:intergenic | 30.0% | |
| ! | AATACTTCAACTTTTCTGCA+TGG | + | chr3.1:4093339-4093358 | MS.gene84358:CDS | 30.0% |
| ! | ACATTTTTGCTTGAATCACT+TGG | + | chr3.1:4095405-4095424 | MS.gene84358:CDS | 30.0% |
| ! | ACGCGTTTTTGATATTATGA+AGG | + | chr3.1:4095157-4095176 | MS.gene84358:CDS | 30.0% |
| ! | ATCGATATTTTCTTGTGAGT+AGG | - | chr3.1:4093453-4093472 | None:intergenic | 30.0% |
| ! | CATTGTTTCTTGATTACGAT+GGG | + | chr3.1:4093696-4093715 | MS.gene84358:CDS | 30.0% |
| ! | GAAAAGTTTAGATCTAGAAC+TGG | - | chr3.1:4095226-4095245 | None:intergenic | 30.0% |
| ! | GCAATTTTGTACATTTGCTT+TGG | + | chr3.1:4095842-4095861 | MS.gene84358:intron | 30.0% |
| !! | CTATATATATTGGTGACGAT+CGG | + | chr3.1:4095552-4095571 | MS.gene84358:CDS | 30.0% |
| !! | GACTTGTTACAAAACTTTAG+TGG | + | chr3.1:4095267-4095286 | MS.gene84358:intron | 30.0% |
| !! | TCTTCTAAAATTACAGGGTA+AGG | + | chr3.1:4094456-4094475 | MS.gene84358:intron | 30.0% |
| !! | TGATAATGTTCAGGTTTTAG+AGG | + | chr3.1:4095344-4095363 | MS.gene84358:intron | 30.0% |
| !! | TTTTTGCACCTTATTTCTTC+AGG | + | chr3.1:4094205-4094224 | MS.gene84358:intron | 30.0% |
| ACCATAAGAATTACCTCTGA+AGG | - | chr3.1:4095784-4095803 | None:intergenic | 35.0% | |
| ACTTATCGCGTATTTCATCA+TGG | + | chr3.1:4095065-4095084 | MS.gene84358:intron | 35.0% | |
| AGTCATGGAATGGACATAAT+TGG | + | chr3.1:4094269-4094288 | MS.gene84358:CDS | 35.0% | |
| ATATCGATGGATATTGGTCA+TGG | + | chr3.1:4093465-4093484 | MS.gene84358:CDS | 35.0% | |
| ATGATGTTCGTTCTAATGGT+TGG | + | chr3.1:4093403-4093422 | MS.gene84358:CDS | 35.0% | |
| ATGCATACCTCATCAATCAT+AGG | - | chr3.1:4094517-4094536 | None:intergenic | 35.0% | |
| CAGTAGACCTAATGCAATTA+GGG | - | chr3.1:4094325-4094344 | None:intergenic | 35.0% | |
| CATTAGGTCTACTGATAAGA+AGG | + | chr3.1:4094331-4094350 | MS.gene84358:CDS | 35.0% | |
| CCACATTTACGATTAACTCA+TGG | + | chr3.1:4095185-4095204 | MS.gene84358:CDS | 35.0% | |
| CCATGAGTTAATCGTAAATG+TGG | - | chr3.1:4095188-4095207 | None:intergenic | 35.0% | |
| CGAGAATCAAAAAGGAAAGA+AGG | - | chr3.1:4094872-4094891 | None:intergenic | 35.0% | |
| CTTCAGGTACATGAATTTGT+TGG | + | chr3.1:4094221-4094240 | MS.gene84358:intron | 35.0% | |
| GAGTGTACAAAAGACATCAA+AGG | + | chr3.1:4094769-4094788 | MS.gene84358:CDS | 35.0% | |
| GATATAAAATGGACCGTAAC+AGG | + | chr3.1:4095675-4095694 | MS.gene84358:intron | 35.0% | |
| TACAAGAGCGAGAATCAAAA+AGG | - | chr3.1:4094880-4094899 | None:intergenic | 35.0% | |
| TACAAGTAAAGTGACACGAA+TGG | - | chr3.1:4094151-4094170 | None:intergenic | 35.0% | |
| TAGAGTTTCCATCAGCAATT+GGG | + | chr3.1:4093630-4093649 | MS.gene84358:CDS | 35.0% | |
| TCAGTAGACCTAATGCAATT+AGG | - | chr3.1:4094326-4094345 | None:intergenic | 35.0% | |
| TCCGCAACAAATTACATAGA+GGG | - | chr3.1:4093557-4093576 | None:intergenic | 35.0% | |
| TCCTTCAGAGGTAATTCTTA+TGG | + | chr3.1:4095780-4095799 | MS.gene84358:intron | 35.0% | |
| TGATGAAATACGCGATAAGT+TGG | - | chr3.1:4095065-4095084 | None:intergenic | 35.0% | |
| TTAACAGATCTCCATTATGC+TGG | + | chr3.1:4094245-4094264 | MS.gene84358:CDS | 35.0% | |
| TTCCGCAACAAATTACATAG+AGG | - | chr3.1:4093558-4093577 | None:intergenic | 35.0% | |
| ! | AGCGAGGTTAATAAAGGTTT+TGG | + | chr3.1:4095703-4095722 | MS.gene84358:CDS | 35.0% |
| ! | CACGTGACATGTTTTCATTT+AGG | + | chr3.1:4095503-4095522 | MS.gene84358:intron | 35.0% |
| ! | CATGTTGTTTGCTAGTACAT+TGG | + | chr3.1:4095872-4095891 | MS.gene84358:intron | 35.0% |
| ! | CTATTTTCTTGCCTTTTGCA+AGG | - | chr3.1:4093676-4093695 | None:intergenic | 35.0% |
| ! | GCATTGTTTCTTGATTACGA+TGG | + | chr3.1:4093695-4093714 | MS.gene84358:CDS | 35.0% |
| !! | ACCCTCTATGTAATTTGTTG+CGG | + | chr3.1:4093553-4093572 | MS.gene84358:intron | 35.0% |
| !! | ATTTTTCAACTGTACCAGAG+GGG | - | chr3.1:4094126-4094145 | None:intergenic | 35.0% |
| !! | CATTTTTCAACTGTACCAGA+GGG | - | chr3.1:4094127-4094146 | None:intergenic | 35.0% |
| !! | CGCGATAAGTTGGTTAAAAA+TGG | - | chr3.1:4095055-4095074 | None:intergenic | 35.0% |
| !! | GTTTTGAGCGAGGTTAATAA+AGG | + | chr3.1:4095697-4095716 | MS.gene84358:CDS | 35.0% |
| !! | TCATTTTTCAACTGTACCAG+AGG | - | chr3.1:4094128-4094147 | None:intergenic | 35.0% |
| !! | TGTAATTTGTTGCGGAAGTT+CGG | + | chr3.1:4093561-4093580 | MS.gene84358:intron | 35.0% |
| ACATTATCGCAATGTAGACG+AGG | + | chr3.1:4094828-4094847 | MS.gene84358:CDS | 40.0% | |
| AGAATTCCTATCTTCTTCCG+TGG | - | chr3.1:4093381-4093400 | None:intergenic | 40.0% | |
| AGAGTTTCCATCAGCAATTG+GGG | + | chr3.1:4093631-4093650 | MS.gene84358:CDS | 40.0% | |
| ATACCTCATCAATCATAGGC+AGG | - | chr3.1:4094513-4094532 | None:intergenic | 40.0% | |
| ATGAGCACTAACACAGATAC+CGG | - | chr3.1:4094703-4094722 | None:intergenic | 40.0% | |
| ATTCCTGCCTATGATTGATG+AGG | + | chr3.1:4094507-4094526 | MS.gene84358:CDS | 40.0% | |
| CCTTAACAAGGACAAGATCA+AGG | + | chr3.1:4093274-4093293 | MS.gene84358:CDS | 40.0% | |
| CCTTGATCTTGTCCTTGTTA+AGG | - | chr3.1:4093277-4093296 | None:intergenic | 40.0% | |
| CTAGAGTTTCCATCAGCAAT+TGG | + | chr3.1:4093629-4093648 | MS.gene84358:CDS | 40.0% | |
| CTCGATGATGTTCGTTCTAA+TGG | + | chr3.1:4093399-4093418 | MS.gene84358:CDS | 40.0% | |
| CTTCCGCTAATTATTGCAGT+CGG | - | chr3.1:4093921-4093940 | None:intergenic | 40.0% | |
| GACCGATGAAGATGCATTTA+AGG | + | chr3.1:4095574-4095593 | MS.gene84358:CDS | 40.0% | |
| GGAATTTCTCAAGTCACTTG+TGG | + | chr3.1:4095972-4095991 | MS.gene84358:CDS | 40.0% | |
| GTCAAACTTGTGGTATATGC+AGG | + | chr3.1:4095945-4095964 | MS.gene84358:intron | 40.0% | |
| TACACTCAGTGAGCAACTTA+CGG | - | chr3.1:4094756-4094775 | None:intergenic | 40.0% | |
| TAGTGCTCATAGATCATGAC+TGG | + | chr3.1:4094713-4094732 | MS.gene84358:intron | 40.0% | |
| TCAGATACAGACTGTCTAAG+AGG | - | chr3.1:4094296-4094315 | None:intergenic | 40.0% | |
| TCATGTTTGTACTAGCTCAG+TGG | + | chr3.1:4094059-4094078 | MS.gene84358:intron | 40.0% | |
| TCTGCAGATGTTACATGATC+AGG | - | chr3.1:4093863-4093882 | None:intergenic | 40.0% | |
| TTATGCTGGTAGTCATGGAA+TGG | + | chr3.1:4094259-4094278 | MS.gene84358:CDS | 40.0% | |
| TTCCATGACTACCAGCATAA+TGG | - | chr3.1:4094259-4094278 | None:intergenic | 40.0% | |
| TTCCCGACTGCAATAATTAG+CGG | + | chr3.1:4093915-4093934 | MS.gene84358:CDS | 40.0% | |
| TTCCGCTAATTATTGCAGTC+GGG | - | chr3.1:4093920-4093939 | None:intergenic | 40.0% | |
| TTCTCAAGTCACTTGTGGTA+TGG | + | chr3.1:4095977-4095996 | MS.gene84358:CDS | 40.0% | |
| TTTACAGAGTTGGGATTTGG+TGG | + | chr3.1:4095130-4095149 | MS.gene84358:intron | 40.0% | |
| ! | AAACCGCGTTGCTTTCTTTA+GGG | - | chr3.1:4095747-4095766 | None:intergenic | 40.0% |
| ! | CTGATGCTGCTTATTTAACC+TGG | + | chr3.1:4093505-4093524 | MS.gene84358:CDS | 40.0% |
| ! | TAAACCGCGTTGCTTTCTTT+AGG | - | chr3.1:4095748-4095767 | None:intergenic | 40.0% |
| !! | GGCTATTTTGCGTGTATTCA+AGG | + | chr3.1:4095453-4095472 | MS.gene84358:intron | 40.0% |
| !! | TCTTATTGGTGTCAGCATGT+CGG | + | chr3.1:4094657-4094676 | MS.gene84358:intron | 40.0% |
| !! | TGTATCATTAGGGCCTTGTT+TGG | + | chr3.1:4095904-4095923 | MS.gene84358:intron | 40.0% |
| ACAAGGACAAGATCAAGGCT+CGG | + | chr3.1:4093279-4093298 | MS.gene84358:CDS | 45.0% | |
| ACCAGTGATTGACTGGGATA+AGG | + | chr3.1:4095371-4095390 | MS.gene84358:CDS | 45.0% | |
| ACCTCGCTCAAAACCTGTTA+CGG | - | chr3.1:4095691-4095710 | None:intergenic | 45.0% | |
| ACGATTAACTCATGGTCGGA+AGG | + | chr3.1:4095193-4095212 | MS.gene84358:CDS | 45.0% | |
| ACGATTCCACGGAAGAAGAT+AGG | + | chr3.1:4093372-4093391 | MS.gene84358:CDS | 45.0% | |
| CCAGTGATTGACTGGGATAA+GGG | + | chr3.1:4095372-4095391 | MS.gene84358:CDS | 45.0% | |
| CGCTCAGGATTGTCAACAAT+TGG | - | chr3.1:4093731-4093750 | None:intergenic | 45.0% | |
| CTCCATTATGCTGGTAGTCA+TGG | + | chr3.1:4094254-4094273 | MS.gene84358:CDS | 45.0% | |
| CTCTCTTTGTGATCCTTCAG+AGG | + | chr3.1:4095768-4095787 | MS.gene84358:CDS | 45.0% | |
| CTGACACTGCAACCTTAACA+AGG | + | chr3.1:4093262-4093281 | MS.gene84358:CDS | 45.0% | |
| CTTGTGGTATATGCAGGTCA+TGG | + | chr3.1:4095951-4095970 | MS.gene84358:intron | 45.0% | |
| GATTTGAACTCTGTCCCTTG+AGG | - | chr3.1:4094104-4094123 | None:intergenic | 45.0% | |
| GTATGTGTTTCATACCAGCC+AGG | - | chr3.1:4093526-4093545 | None:intergenic | 45.0% | |
| TAGCGGAAGAAGTCGAGAAA+AGG | + | chr3.1:4093932-4093951 | MS.gene84358:CDS | 45.0% | |
| TGAGCACTAACACAGATACC+GGG | - | chr3.1:4094702-4094721 | None:intergenic | 45.0% | |
| TTATCGCAATGTAGACGAGG+AGG | + | chr3.1:4094831-4094850 | MS.gene84358:CDS | 45.0% | |
| ! | AACCGCGTTGCTTTCTTTAG+GGG | - | chr3.1:4095746-4095765 | None:intergenic | 45.0% |
| ! | GAGGAGCATGATTTGTCTTC+AGG | - | chr3.1:4093236-4093255 | None:intergenic | 45.0% |
| ! | TGACTGGCTCATGTTTATGC+AGG | + | chr3.1:4094729-4094748 | MS.gene84358:intron | 45.0% |
| ! | TGCTGCTTATTTAACCTGGC+TGG | + | chr3.1:4093509-4093528 | MS.gene84358:CDS | 45.0% |
| AGCTCGACCTTGTAACCTCA+AGG | + | chr3.1:4094086-4094105 | MS.gene84358:intron | 50.0% | |
| AGGTTCGACCAGTGATTGAC+TGG | + | chr3.1:4095364-4095383 | MS.gene84358:CDS | 50.0% | |
| ATAGGCAGGAATTCAGCAGC+AGG | - | chr3.1:4094499-4094518 | None:intergenic | 50.0% | |
| CCCTTATCCCAGTCAATCAC+TGG | - | chr3.1:4095375-4095394 | None:intergenic | 50.0% | |
| CTCTGTCCCTTGAGGTTACA+AGG | - | chr3.1:4094096-4094115 | None:intergenic | 50.0% | |
| CTTAGTGTTAGTGTCGTGCC+CGG | + | chr3.1:4094681-4094700 | MS.gene84358:intron | 50.0% | |
| GACAGAGTTCAAATCCCCTC+TGG | + | chr3.1:4094109-4094128 | MS.gene84358:intron | 50.0% | |
| GCAGCATCAGCTTCAGAAGA+TGG | - | chr3.1:4093495-4093514 | None:intergenic | 50.0% | |
| GCTCGACCTTGTAACCTCAA+GGG | + | chr3.1:4094087-4094106 | MS.gene84358:intron | 50.0% | |
| GGTTCGACCAGTGATTGACT+GGG | + | chr3.1:4095365-4095384 | MS.gene84358:CDS | 50.0% | |
| GTCCATCGCTAACGATTCCA+CGG | + | chr3.1:4093361-4093380 | MS.gene84358:CDS | 50.0% | |
| TCAATGGCCCCAATTGCTGA+TGG | - | chr3.1:4093641-4093660 | None:intergenic | 50.0% | |
| TTCCGTGGAATCGTTAGCGA+TGG | - | chr3.1:4093366-4093385 | None:intergenic | 50.0% | |
| ! | ACAGTGCTATTCGCCTTTGC+AGG | - | chr3.1:4093784-4093803 | None:intergenic | 50.0% |
| ! | GCGTGCTGCTGTTAAAAGTG+TGG | + | chr3.1:4093884-4093903 | MS.gene84358:CDS | 50.0% |
| ! | TCAGACATGAAAGCACGCTC+AGG | - | chr3.1:4093746-4093765 | None:intergenic | 50.0% |
| !!! | ACCGTAACAGGTTTTGAGCG+AGG | + | chr3.1:4095687-4095706 | MS.gene84358:intron | 50.0% |
| CGCCCCTAAAGAAAGCAACG+CGG | + | chr3.1:4095741-4095760 | MS.gene84358:CDS | 55.0% | |
| GCAGGAATTCAGCAGCAGGT+TGG | - | chr3.1:4094495-4094514 | None:intergenic | 55.0% | |
| GTTGCAGTGTCAGCAATGCG+AGG | - | chr3.1:4093255-4093274 | None:intergenic | 55.0% | |
| ! | CGCGTTGCTTTCTTTAGGGG+CGG | - | chr3.1:4095743-4095762 | None:intergenic | 55.0% |
| ! | GGAGAGCATGACAGACTCGA+AGG | - | chr3.1:4093315-4093334 | None:intergenic | 55.0% |
| ACAAGATCAAGGCTCGGCGC+AGG | + | chr3.1:4093285-4093304 | MS.gene84358:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 4093228 | 4096020 | 4093228 | ID=MS.gene84358 |
| chr3.1 | mRNA | 4093228 | 4096020 | 4093228 | ID=MS.gene84358.t1;Parent=MS.gene84358 |
| chr3.1 | exon | 4093228 | 4093530 | 4093228 | ID=MS.gene84358.t1.exon1;Parent=MS.gene84358.t1 |
| chr3.1 | CDS | 4093228 | 4093530 | 4093228 | ID=cds.MS.gene84358.t1;Parent=MS.gene84358.t1 |
| chr3.1 | exon | 4093629 | 4093769 | 4093629 | ID=MS.gene84358.t1.exon2;Parent=MS.gene84358.t1 |
| chr3.1 | CDS | 4093629 | 4093769 | 4093629 | ID=cds.MS.gene84358.t1;Parent=MS.gene84358.t1 |
| chr3.1 | exon | 4093882 | 4093953 | 4093882 | ID=MS.gene84358.t1.exon3;Parent=MS.gene84358.t1 |
| chr3.1 | CDS | 4093882 | 4093953 | 4093882 | ID=cds.MS.gene84358.t1;Parent=MS.gene84358.t1 |
| chr3.1 | exon | 4094227 | 4094352 | 4094227 | ID=MS.gene84358.t1.exon4;Parent=MS.gene84358.t1 |
| chr3.1 | CDS | 4094227 | 4094352 | 4094227 | ID=cds.MS.gene84358.t1;Parent=MS.gene84358.t1 |
| chr3.1 | exon | 4094472 | 4094528 | 4094472 | ID=MS.gene84358.t1.exon5;Parent=MS.gene84358.t1 |
| chr3.1 | CDS | 4094472 | 4094528 | 4094472 | ID=cds.MS.gene84358.t1;Parent=MS.gene84358.t1 |
| chr3.1 | exon | 4094751 | 4094852 | 4094751 | ID=MS.gene84358.t1.exon6;Parent=MS.gene84358.t1 |
| chr3.1 | CDS | 4094751 | 4094852 | 4094751 | ID=cds.MS.gene84358.t1;Parent=MS.gene84358.t1 |
| chr3.1 | exon | 4095137 | 4095214 | 4095137 | ID=MS.gene84358.t1.exon7;Parent=MS.gene84358.t1 |
| chr3.1 | CDS | 4095137 | 4095214 | 4095137 | ID=cds.MS.gene84358.t1;Parent=MS.gene84358.t1 |
| chr3.1 | exon | 4095357 | 4095426 | 4095357 | ID=MS.gene84358.t1.exon8;Parent=MS.gene84358.t1 |
| chr3.1 | CDS | 4095357 | 4095426 | 4095357 | ID=cds.MS.gene84358.t1;Parent=MS.gene84358.t1 |
| chr3.1 | exon | 4095525 | 4095595 | 4095525 | ID=MS.gene84358.t1.exon9;Parent=MS.gene84358.t1 |
| chr3.1 | CDS | 4095525 | 4095595 | 4095525 | ID=cds.MS.gene84358.t1;Parent=MS.gene84358.t1 |
| chr3.1 | exon | 4095697 | 4095789 | 4095697 | ID=MS.gene84358.t1.exon10;Parent=MS.gene84358.t1 |
| chr3.1 | CDS | 4095697 | 4095789 | 4095697 | ID=cds.MS.gene84358.t1;Parent=MS.gene84358.t1 |
| chr3.1 | exon | 4095967 | 4096020 | 4095967 | ID=MS.gene84358.t1.exon11;Parent=MS.gene84358.t1 |
| chr3.1 | CDS | 4095967 | 4096020 | 4095967 | ID=cds.MS.gene84358.t1;Parent=MS.gene84358.t1 |
| Gene Sequence |
| Protein sequence |
