Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84659.t1 | TKY64232.1 | 76.9 | 117 | 25 | 2 | 4 | 120 | 70 | 184 | 4.30E-39 | 170.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84659.t1 | Q94AU2 | 72.6 | 117 | 30 | 2 | 4 | 120 | 70 | 184 | 1.1e-38 | 160.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84659.t1 | A0A1S2YVE0 | 76.9 | 117 | 25 | 2 | 4 | 120 | 70 | 184 | 4.1e-39 | 170.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054236 | MS.gene84659 | 0.816954 | 4.24E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84659.t1 | MTR_8g022210 | 77.778 | 117 | 24 | 2 | 4 | 120 | 70 | 184 | 5.80e-48 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84659.t1 | AT1G11890 | 72.650 | 117 | 30 | 2 | 4 | 120 | 70 | 184 | 1.04e-54 | 170 |
Find 0 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATGACATATAATAATTT+AGG | - | 56074:4326-4345 | MS.gene84659:intron | 15.0% |
| !! | AGATAGAGTAATAAATATTA+AGG | - | 56074:4226-4245 | MS.gene84659:intron | 15.0% |
| !! | GAAATGTAATTAATATTGTA+TGG | - | 56074:4156-4175 | MS.gene84659:intron | 15.0% |
| !! | GATAGAGTAATAAATATTAA+GGG | - | 56074:4227-4246 | MS.gene84659:intron | 15.0% |
| !! | TGTAAAATGACTTATAATTT+GGG | - | 56074:4287-4306 | MS.gene84659:intron | 15.0% |
| !! | TGTTTATCATTAATGATAAA+AGG | + | 56074:4817-4836 | MS.gene84659:intergenic | 15.0% |
| !! | TTGTAAAATGACTTATAATT+TGG | - | 56074:4286-4305 | MS.gene84659:intron | 15.0% |
| !!! | ATATCCTAATAATTTGTATT+GGG | + | 56074:6236-6255 | MS.gene84659:intergenic | 15.0% |
| !!! | GATAATTTTGAATATAGTAT+AGG | - | 56074:3543-3562 | MS.gene84659:intron | 15.0% |
| !! | ATAATGACTGTTTCATTTAT+TGG | + | 56074:4582-4601 | MS.gene84659:intergenic | 20.0% |
| !! | ATTAATGAAATTGATACCTT+AGG | + | 56074:5215-5234 | MS.gene84659:intergenic | 20.0% |
| !! | ATTCTAGACAAAATAGTTTA+GGG | + | 56074:3966-3985 | MS.gene84659:intergenic | 20.0% |
| !! | CCACATTATTAATCTAAATT+CGG | + | 56074:6197-6216 | MS.gene84659:intergenic | 20.0% |
| !! | CTGAAAAGAATAATAACTAA+GGG | - | 56074:4473-4492 | MS.gene84659:intron | 20.0% |
| !! | GCAACATAAATTAAAAGAAT+TGG | - | 56074:4198-4217 | MS.gene84659:intron | 20.0% |
| !! | GTAAAATGACTTATAATTTG+GGG | - | 56074:4288-4307 | MS.gene84659:intron | 20.0% |
| !! | TAATTAATGTGTTAGGTTAA+AGG | - | 56074:3928-3947 | MS.gene84659:intron | 20.0% |
| !! | TATTCTAGACAAAATAGTTT+AGG | + | 56074:3967-3986 | MS.gene84659:intergenic | 20.0% |
| !! | TCTATTAAACAAAAGAACAA+AGG | + | 56074:3315-3334 | MS.gene84659:intergenic | 20.0% |
| !! | TCTGAAAAGAATAATAACTA+AGG | - | 56074:4472-4491 | MS.gene84659:intron | 20.0% |
| !! | TGAAAAGAATAATAACTAAG+GGG | - | 56074:4474-4493 | MS.gene84659:intron | 20.0% |
| !!! | ATAAATATTAAGGGCATAAT+AGG | - | 56074:4236-4255 | MS.gene84659:intron | 20.0% |
| !!! | GATATCCTAATAATTTGTAT+TGG | + | 56074:6237-6256 | MS.gene84659:intergenic | 20.0% |
| !!! | GTTTCATTTATTGGTTTAAT+AGG | + | 56074:4573-4592 | MS.gene84659:intergenic | 20.0% |
| !!! | TAACAAATTTTTCTAAGTGA+AGG | + | 56074:6122-6141 | MS.gene84659:intergenic | 20.0% |
| !!! | TAAGTTATTCTCTGTATTTT+CGG | - | 56074:3482-3501 | MS.gene84659:intron | 20.0% |
| ! | AAAAAAGAAATATTGTGAGC+AGG | + | 56074:4737-4756 | MS.gene84659:intergenic | 25.0% |
| ! | AAAGGTAATTAAAACACCAT+TGG | + | 56074:3297-3316 | MS.gene84659:intergenic | 25.0% |
| ! | ACTTCCCAATACAAATTATT+AGG | - | 56074:6229-6248 | MS.gene84659:intron | 25.0% |
| ! | AGTAAGCTGATATTTAGTTA+AGG | + | 56074:5319-5338 | MS.gene84659:intergenic | 25.0% |
| ! | ATATAAATCTGAATAAAGCC+AGG | + | 56074:3768-3787 | MS.gene84659:intergenic | 25.0% |
| ! | ATATGTACTCACTGTAAAAA+TGG | - | 56074:3699-3718 | MS.gene84659:intron | 25.0% |
| ! | ATATTTCATCTAACCATTCA+TGG | - | 56074:4900-4919 | MS.gene84659:intron | 25.0% |
| ! | ATGAACAAGTATCCAAAAAA+GGG | + | 56074:4453-4472 | MS.gene84659:intergenic | 25.0% |
| ! | ATGTCCTTCTATTTAACATT+AGG | + | 56074:6334-6353 | MS.gene84659:intergenic | 25.0% |
| ! | ATTCATAAGAAATGAAGCAT+GGG | - | 56074:3637-3656 | MS.gene84659:intron | 25.0% |
| ! | CAAGTAAGAATACAAATGTA+TGG | + | 56074:3728-3747 | MS.gene84659:intergenic | 25.0% |
| ! | CAGCTATGGTATTAATTTAA+GGG | - | 56074:3904-3923 | MS.gene84659:intron | 25.0% |
| ! | CATACATTTGTATTCTTACT+TGG | - | 56074:3726-3745 | MS.gene84659:intron | 25.0% |
| ! | CCGAATTTAGATTAATAATG+TGG | - | 56074:6194-6213 | MS.gene84659:intron | 25.0% |
| ! | GACCTTCTTATAATTTGAAA+AGG | - | 56074:6273-6292 | MS.gene84659:intron | 25.0% |
| ! | GTATAAGATAACTTTCACAA+AGG | + | 56074:6615-6634 | MS.gene84659:intergenic | 25.0% |
| ! | TAAGACAAATTGTAGCATTT+CGG | + | 56074:5985-6004 | MS.gene84659:intergenic | 25.0% |
| ! | TAAGGGATAATTAATGTGTT+AGG | - | 56074:3921-3940 | MS.gene84659:intron | 25.0% |
| ! | TATTTACCAAACCTTAATGA+AGG | + | 56074:3229-3248 | MS.gene84659:intergenic | 25.0% |
| ! | TTGAAGATGAAGATGAAAAT+AGG | - | 56074:5717-5736 | MS.gene84659:intron | 25.0% |
| !! | AGCCTTTTCAAATTATAAGA+AGG | + | 56074:6278-6297 | MS.gene84659:intergenic | 25.0% |
| !! | ATATAATAATTTAGGACCGT+GGG | - | 56074:4334-4353 | MS.gene84659:intron | 25.0% |
| !! | ATTTAAAATCAAACATGCAG+AGG | - | 56074:6640-6659 | MS.gene84659:CDS | 25.0% |
| !! | ATTTTGTTGAGAAAAATTGC+AGG | + | 56074:5090-5109 | MS.gene84659:intergenic | 25.0% |
| !! | CACTTCTTTTATCAGAAAAA+GGG | + | 56074:3860-3879 | MS.gene84659:intergenic | 25.0% |
| !! | TTAGAGTGTCAATTTGATAT+TGG | - | 56074:3991-4010 | MS.gene84659:intron | 25.0% |
| !!! | AAAAGTGTTTTTGTTGAAAC+CGG | + | 56074:5533-5552 | MS.gene84659:intergenic | 25.0% |
| !!! | TCTTATTTCTACTTCTCATA+TGG | - | 56074:6544-6563 | MS.gene84659:intron | 25.0% |
| AAATATCAGCTTACTAAGCA+AGG | - | 56074:5324-5343 | MS.gene84659:intron | 30.0% | |
| AATATCAGCTTACTAAGCAA+GGG | - | 56074:5325-5344 | MS.gene84659:intron | 30.0% | |
| AATGAATTTGAGCGTGTTAA+TGG | - | 56074:3168-3187 | MS.gene84659:intron | 30.0% | |
| AATTCACCTTAACCACAATA+GGG | - | 56074:5637-5656 | MS.gene84659:intron | 30.0% | |
| ACATAAGATGATTCTCCAAT+AGG | - | 56074:6350-6369 | MS.gene84659:CDS | 30.0% | |
| AGAAATTAGTAGTAAAGCCT+TGG | + | 56074:5188-5207 | MS.gene84659:intergenic | 30.0% | |
| ATAAGATGATTCTCCAATAG+GGG | - | 56074:6352-6371 | MS.gene84659:CDS | 30.0% | |
| ATCCAAAAAAGGGAAAAAGA+AGG | + | 56074:4443-4462 | MS.gene84659:intergenic | 30.0% | |
| ATGAATTTGAGCGTGTTAAT+GGG | - | 56074:3169-3188 | MS.gene84659:intron | 30.0% | |
| ATTTGTCTTATATGTTAGCC+TGG | - | 56074:5995-6014 | MS.gene84659:intron | 30.0% | |
| CATAAGATGATTCTCCAATA+GGG | - | 56074:6351-6370 | MS.gene84659:CDS | 30.0% | |
| CATTCATAAGAAATGAAGCA+TGG | - | 56074:3636-3655 | MS.gene84659:intron | 30.0% | |
| CATTTGTATTCTTACTTGGT+TGG | - | 56074:3730-3749 | MS.gene84659:intron | 30.0% | |
| CTTATAATTTGAAAAGGCTG+CGG | - | 56074:6279-6298 | MS.gene84659:intron | 30.0% | |
| GATGAACAAGTATCCAAAAA+AGG | + | 56074:4454-4473 | MS.gene84659:intergenic | 30.0% | |
| GCAGCTATGGTATTAATTTA+AGG | - | 56074:3903-3922 | MS.gene84659:intron | 30.0% | |
| GTAAGAATACAAATGTATGG+TGG | + | 56074:3725-3744 | MS.gene84659:intergenic | 30.0% | |
| GTTTATCTTCCTTGAAGTTT+CGG | - | 56074:5497-5516 | MS.gene84659:intron | 30.0% | |
| TAATTACTTCTATGCTACCA+AGG | - | 56074:6162-6181 | MS.gene84659:intron | 30.0% | |
| TGCCAAAGTGACATTTAATT+TGG | + | 56074:4103-4122 | MS.gene84659:intergenic | 30.0% | |
| TTTATCTTCCTTGAAGTTTC+GGG | - | 56074:5498-5517 | MS.gene84659:intron | 30.0% | |
| ! | AATAGAGTTTGAAATCCACA+AGG | + | 56074:5753-5772 | MS.gene84659:intergenic | 30.0% |
| ! | AATTTTTCTAAGTGAAGGAG+AGG | + | 56074:6117-6136 | MS.gene84659:intergenic | 30.0% |
| ! | ATACTGAAATGCTAGTTTCT+TGG | + | 56074:3131-3150 | MS.gene84659:intergenic | 30.0% |
| ! | CATATAATAATTTAGGACCG+TGG | - | 56074:4333-4352 | MS.gene84659:intron | 30.0% |
| ! | GCACTTCTTTTATCAGAAAA+AGG | + | 56074:3861-3880 | MS.gene84659:intergenic | 30.0% |
| ! | GCCAAAGTGACATTTAATTT+GGG | + | 56074:4102-4121 | MS.gene84659:intergenic | 30.0% |
| ! | TACCTTCTTTTTCCCTTTTT+TGG | - | 56074:4438-4457 | MS.gene84659:intron | 30.0% |
| ! | TACTGAAATGCTAGTTTCTT+GGG | + | 56074:3130-3149 | MS.gene84659:intergenic | 30.0% |
| ! | TCCCAAATTAAATGTCACTT+TGG | - | 56074:4098-4117 | MS.gene84659:intron | 30.0% |
| ! | TTTGTCTTATATGTTAGCCT+GGG | - | 56074:5996-6015 | MS.gene84659:intron | 30.0% |
| !! | AAAAAGAGAAGAGTGCTAAA+TGG | + | 56074:3274-3293 | MS.gene84659:intergenic | 30.0% |
| !! | AAAGTGTTTTTGTTGAAACC+GGG | + | 56074:5532-5551 | MS.gene84659:intergenic | 30.0% |
| !! | AAGTGACATTTAATTTGGGA+CGG | + | 56074:4098-4117 | MS.gene84659:intergenic | 30.0% |
| !! | CTTTGGCAAATATGTCATTT+TGG | - | 56074:4115-4134 | MS.gene84659:intron | 30.0% |
| !!! | AGTCACAGGATATTTTTTTC+GGG | + | 56074:5568-5587 | MS.gene84659:intergenic | 30.0% |
| !!! | GAGTCACAGGATATTTTTTT+CGG | + | 56074:5569-5588 | MS.gene84659:intergenic | 30.0% |
| AAATATTGTGAGCAGGTATC+CGG | + | 56074:4730-4749 | MS.gene84659:intergenic | 35.0% | |
| AACTCACCTTAACCACAATA+AGG | - | 56074:5679-5698 | MS.gene84659:intron | 35.0% | |
| AATCCTATTATGTACTCCCA+CGG | + | 56074:4353-4372 | MS.gene84659:intergenic | 35.0% | |
| ACAAATTGTAGCATTTCGGA+AGG | + | 56074:5981-6000 | MS.gene84659:intergenic | 35.0% | |
| AGTTAGAGAATCCGGATAAT+CGG | + | 56074:4549-4568 | MS.gene84659:intergenic | 35.0% | |
| ATAAGAAATGAAGCATGGGT+TGG | - | 56074:3641-3660 | MS.gene84659:intron | 35.0% | |
| CCTGCCTAATGTTAAATAGA+AGG | - | 56074:6327-6346 | MS.gene84659:CDS | 35.0% | |
| CCTTCTATTTAACATTAGGC+AGG | + | 56074:6330-6349 | MS.gene84659:intergenic | 35.0% | |
| CGATAAGCCTTCTTCTATAA+CGG | - | 56074:5818-5837 | MS.gene84659:intron | 35.0% | |
| CGGGTTAAGAAAATAGGAAT+GGG | + | 56074:6431-6450 | MS.gene84659:intergenic | 35.0% | |
| CGTTATAGAAGAAGGCTTAT+CGG | + | 56074:5820-5839 | MS.gene84659:intergenic | 35.0% | |
| CTACTAATTTCTCAAGCCTA+AGG | - | 56074:5196-5215 | MS.gene84659:intron | 35.0% | |
| CTTATGCCTTCATTAAGGTT+TGG | - | 56074:3220-3239 | MS.gene84659:intron | 35.0% | |
| GAAGACAAAGAAACTTTACC+AGG | - | 56074:3347-3366 | MS.gene84659:intron | 35.0% | |
| GAATTCACCTTAACCACAAT+AGG | - | 56074:5636-5655 | MS.gene84659:intron | 35.0% | |
| GATATCACACTAACAATGCT+TGG | - | 56074:6251-6270 | MS.gene84659:intron | 35.0% | |
| GATTGCTCTGTAGATAAAAG+TGG | + | 56074:4655-4674 | MS.gene84659:intergenic | 35.0% | |
| GCCTTGAGTTTCAAATTAGA+GGG | - | 56074:4937-4956 | MS.gene84659:intron | 35.0% | |
| GGCAATTCAGTAAATTTCCT+AGG | + | 56074:6096-6115 | MS.gene84659:intergenic | 35.0% | |
| GGGTTAAGAAAATAGGAATG+GGG | + | 56074:6430-6449 | MS.gene84659:intergenic | 35.0% | |
| GTCATAACACTTCTAACTCA+TGG | - | 56074:5157-5176 | MS.gene84659:intron | 35.0% | |
| TAAGAAATGAAGCATGGGTT+GGG | - | 56074:3642-3661 | MS.gene84659:intron | 35.0% | |
| TAATAGGCAGTTAGAGAATC+CGG | + | 56074:4557-4576 | MS.gene84659:intergenic | 35.0% | |
| TCTAACTCATGGTTTATCCA+AGG | - | 56074:5168-5187 | MS.gene84659:intron | 35.0% | |
| TCTACATTGAACAATGTACC+CGG | + | 56074:6451-6470 | MS.gene84659:intergenic | 35.0% | |
| TGCAATATTACGCTGTGTAT+GGG | + | 56074:3376-3395 | MS.gene84659:intergenic | 35.0% | |
| TGCCTTGAGTTTCAAATTAG+AGG | - | 56074:4936-4955 | MS.gene84659:intron | 35.0% | |
| TGGAGAAATTGCAACTATGA+AGG | - | 56074:5897-5916 | MS.gene84659:intron | 35.0% | |
| TTCATCTTCATCTTCAATCC+AGG | + | 56074:5714-5733 | MS.gene84659:intergenic | 35.0% | |
| TTGCAATATTACGCTGTGTA+TGG | + | 56074:3377-3396 | MS.gene84659:intergenic | 35.0% | |
| TTGTGGTTAAGGTGAATTCT+TGG | + | 56074:5635-5654 | MS.gene84659:intergenic | 35.0% | |
| ! | AACTCTGTCTTTGAAGGAAT+TGG | - | 56074:5877-5896 | MS.gene84659:intron | 35.0% |
| ! | AAGGTGAATTCTTGGTAACA+AGG | + | 56074:5627-5646 | MS.gene84659:intergenic | 35.0% |
| ! | ACTGAAATGCTAGTTTCTTG+GGG | + | 56074:3129-3148 | MS.gene84659:intergenic | 35.0% |
| ! | CAAACCTTAATGAAGGCATA+AGG | + | 56074:3222-3241 | MS.gene84659:intergenic | 35.0% |
| ! | CATTCCTATTTTCTTAACCC+GGG | - | 56074:6430-6449 | MS.gene84659:CDS | 35.0% |
| ! | CCATTCCTATTTTCTTAACC+CGG | - | 56074:6429-6448 | MS.gene84659:CDS | 35.0% |
| ! | TCCCTCTAATTTGAAACTCA+AGG | + | 56074:4941-4960 | MS.gene84659:intergenic | 35.0% |
| ! | TCCGGTGATAGTTATTTCAT+CGG | + | 56074:4712-4731 | MS.gene84659:intergenic | 35.0% |
| AAAATTGCGATCCAACTCGT+AGG | - | 56074:5353-5372 | MS.gene84659:intron | 40.0% | |
| AAACAGAGGATGGACAATTC+TGG | - | 56074:4994-5013 | MS.gene84659:intron | 40.0% | |
| AAATTCGGTCACAATTGCCT+TGG | + | 56074:6182-6201 | MS.gene84659:intergenic | 40.0% | |
| AAATTGCAACTATGAAGGCG+AGG | - | 56074:5902-5921 | MS.gene84659:intron | 40.0% | |
| AATTGCAACTATGAAGGCGA+GGG | - | 56074:5903-5922 | MS.gene84659:intron | 40.0% | |
| ACATGCAACTCTGTCTTTGA+AGG | - | 56074:5871-5890 | MS.gene84659:intron | 40.0% | |
| ACGTCCTTATGCCTTCATTA+AGG | - | 56074:3215-3234 | MS.gene84659:intron | 40.0% | |
| AGATCATGCAGGTGAAAATG+TGG | + | 56074:6508-6527 | MS.gene84659:intergenic | 40.0% | |
| AGCTAATGCTCAATGGGAAA+AGG | - | 56074:4960-4979 | MS.gene84659:intron | 40.0% | |
| ATAGGATTCTTCAAGCCTTG+TGG | - | 56074:5735-5754 | MS.gene84659:intron | 40.0% | |
| CACTTGCGTCAAAACTGATA+AGG | - | 56074:3805-3824 | MS.gene84659:intron | 40.0% | |
| CAGTATCTTGAAAGAGCTCA+AGG | - | 56074:3145-3164 | MS.gene84659:intron | 40.0% | |
| CATTACGAGTCATAATCTGG+TGG | + | 56074:3425-3444 | MS.gene84659:intergenic | 40.0% | |
| CCATAGCTGCAACTTGATAA+AGG | + | 56074:3893-3912 | MS.gene84659:intergenic | 40.0% | |
| CCATCTATTCAAGATCATGC+AGG | + | 56074:6519-6538 | MS.gene84659:intergenic | 40.0% | |
| CCCGATGAAATAACTATCAC+CGG | - | 56074:4708-4727 | MS.gene84659:intron | 40.0% | |
| CCGGGTTAAGAAAATAGGAA+TGG | + | 56074:6432-6451 | MS.gene84659:intergenic | 40.0% | |
| CCTAGGCAATTGTAGCATTT+CGG | + | 56074:6079-6098 | MS.gene84659:intergenic | 40.0% | |
| CCTGCATGATCTTGAATAGA+TGG | - | 56074:6516-6535 | MS.gene84659:intron | 40.0% | |
| CTACATTGAACAATGTACCC+GGG | + | 56074:6450-6469 | MS.gene84659:intergenic | 40.0% | |
| CTAGGCAATTGTAGCATTTC+GGG | + | 56074:6078-6097 | MS.gene84659:intergenic | 40.0% | |
| GAAACTGCGATTCATTCTGT+TGG | - | 56074:5475-5494 | MS.gene84659:intron | 40.0% | |
| GATAGAATCAACACCCCTAT+TGG | + | 56074:6368-6387 | MS.gene84659:intergenic | 40.0% | |
| GATTATGACTCGTAATGTGC+AGG | - | 56074:3428-3447 | MS.gene84659:intron | 40.0% | |
| GCACATTACGAGTCATAATC+TGG | + | 56074:3428-3447 | MS.gene84659:intergenic | 40.0% | |
| GCTAATGCTCAATGGGAAAA+GGG | - | 56074:4961-4980 | MS.gene84659:intron | 40.0% | |
| GGATCACCTTATTGTGGTTA+AGG | + | 56074:5688-5707 | MS.gene84659:intergenic | 40.0% | |
| GTTAAGGTGAGTTCTTATCC+AGG | + | 56074:5672-5691 | MS.gene84659:intergenic | 40.0% | |
| GTTACTTGACAATGTGCGAT+CGG | - | 56074:3098-3117 | MS.gene84659:CDS | 40.0% | |
| GTTAGAGAATCCGGATAATC+GGG | + | 56074:4548-4567 | MS.gene84659:intergenic | 40.0% | |
| GTTGAGAAAAATTGCAGGTG+AGG | + | 56074:5085-5104 | MS.gene84659:intergenic | 40.0% | |
| TAAGCCTTCTTCTATAACGG+AGG | - | 56074:5821-5840 | MS.gene84659:intron | 40.0% | |
| TATATGCATCCACTGCAGTT+GGG | - | 56074:3583-3602 | MS.gene84659:intron | 40.0% | |
| TGGAGAGAGAAAATGAGTCT+AGG | - | 56074:4176-4195 | MS.gene84659:intron | 40.0% | |
| TGTACCCGGGTTAAGAAAAT+AGG | + | 56074:6437-6456 | MS.gene84659:intergenic | 40.0% | |
| TGTCTTTGCAAAACAGAGGA+TGG | - | 56074:4984-5003 | MS.gene84659:intron | 40.0% | |
| TTACTTGACAATGTGCGATC+GGG | - | 56074:3099-3118 | MS.gene84659:CDS | 40.0% | |
| TTCACCTCCGTTATAGAAGA+AGG | + | 56074:5828-5847 | MS.gene84659:intergenic | 40.0% | |
| ! | ATAATCGGGTTAGGGTGTTA+TGG | + | 56074:4534-4553 | MS.gene84659:intergenic | 40.0% |
| ! | ATATGTTAGCCTGGGAGTTT+GGG | - | 56074:6004-6023 | MS.gene84659:intron | 40.0% |
| ! | CCGGTGATAGTTATTTCATC+GGG | + | 56074:4711-4730 | MS.gene84659:intergenic | 40.0% |
| ! | CCTTTATCAAGTTGCAGCTA+TGG | - | 56074:3890-3909 | MS.gene84659:intron | 40.0% |
| ! | GATAGTTATTTCATCGGGAC+AGG | + | 56074:4706-4725 | MS.gene84659:intergenic | 40.0% |
| ! | GCACTCTTCTCTTTTTCCAA+TGG | - | 56074:3278-3297 | MS.gene84659:intron | 40.0% |
| ! | TATATGTTAGCCTGGGAGTT+TGG | - | 56074:6003-6022 | MS.gene84659:intron | 40.0% |
| ! | TTAATGAAGGCATAAGGACG+TGG | + | 56074:3216-3235 | MS.gene84659:intergenic | 40.0% |
| !! | GACATTTAATTTGGGACGGA+GGG | + | 56074:4094-4113 | MS.gene84659:intergenic | 40.0% |
| !! | GGTTGGTCTTATAGTAAACC+TGG | - | 56074:3747-3766 | MS.gene84659:intron | 40.0% |
| !! | TGACATTTAATTTGGGACGG+AGG | + | 56074:4095-4114 | MS.gene84659:intergenic | 40.0% |
| AACACCCTAACCCGATTATC+CGG | - | 56074:4535-4554 | MS.gene84659:intron | 45.0% | |
| AACTCAAGGCATAGTTGACC+AGG | + | 56074:4927-4946 | MS.gene84659:intergenic | 45.0% | |
| AATGGGGAGATCACATGCAT+TGG | + | 56074:6414-6433 | MS.gene84659:intergenic | 45.0% | |
| ACAATAAGGTGATCCTTGCC+TGG | - | 56074:5693-5712 | MS.gene84659:intron | 45.0% | |
| ACAATAGGGTGAACCTTACC+TGG | - | 56074:5651-5670 | MS.gene84659:intron | 45.0% | |
| ACCATACTCTAGCATGCCAA+AGG | + | 56074:5398-5417 | MS.gene84659:intergenic | 45.0% | |
| AGAATCCGGATAATCGGGTT+AGG | + | 56074:4543-4562 | MS.gene84659:intergenic | 45.0% | |
| AGAGGGAGCTAATGCTCAAT+GGG | - | 56074:4954-4973 | MS.gene84659:intron | 45.0% | |
| AGGCAAGGATCACCTTATTG+TGG | + | 56074:5694-5713 | MS.gene84659:intergenic | 45.0% | |
| AGGTAAGGTTCACCCTATTG+TGG | + | 56074:5652-5671 | MS.gene84659:intergenic | 45.0% | |
| CATCTAACCATTCATGGTCC+TGG | - | 56074:4906-4925 | MS.gene84659:intron | 45.0% | |
| CCATACTCTAGCATGCCAAA+GGG | + | 56074:5397-5416 | MS.gene84659:intergenic | 45.0% | |
| CCGAAATGCTACAATTGCCT+AGG | - | 56074:6076-6095 | MS.gene84659:intron | 45.0% | |
| CGTAATGTGCAGGAAGTTCT+TGG | - | 56074:3438-3457 | MS.gene84659:intron | 45.0% | |
| CTTCATCTTCAATCCAGGCA+AGG | + | 56074:5709-5728 | MS.gene84659:intergenic | 45.0% | |
| GAATCCGGATAATCGGGTTA+GGG | + | 56074:4542-4561 | MS.gene84659:intergenic | 45.0% | |
| GCAATTGTAGCATTTCGGGA+AGG | + | 56074:6074-6093 | MS.gene84659:intergenic | 45.0% | |
| GGATTCAGATGATAAGCGAC+TGG | + | 56074:6678-6697 | MS.gene84659:intergenic | 45.0% | |
| GGTGAGTTCTTATCCAGGTA+AGG | + | 56074:5667-5686 | MS.gene84659:intergenic | 45.0% | |
| GGTTCACCCTATTGTGGTTA+AGG | + | 56074:5646-5665 | MS.gene84659:intergenic | 45.0% | |
| GTATATGCATCCACTGCAGT+TGG | - | 56074:3582-3601 | MS.gene84659:intron | 45.0% | |
| TAGAGGGAGCTAATGCTCAA+TGG | - | 56074:4953-4972 | MS.gene84659:intron | 45.0% | |
| TAGTTGACCAGGACCATGAA+TGG | + | 56074:4916-4935 | MS.gene84659:intergenic | 45.0% | |
| TCATGAAAACCCAACTGCAG+TGG | + | 56074:3595-3614 | MS.gene84659:intergenic | 45.0% | |
| TCGAGATCCTACGCAAGTTT+GGG | + | 56074:5595-5614 | MS.gene84659:intergenic | 45.0% | |
| TGCTAGAGTATGGTCGGAAT+CGG | - | 56074:5404-5423 | MS.gene84659:intron | 45.0% | |
| TTATTTCATCGGGACAGGCA+GGG | + | 56074:4701-4720 | MS.gene84659:intergenic | 45.0% | |
| TTGGCATGCTAGAGTATGGT+CGG | - | 56074:5398-5417 | MS.gene84659:intron | 45.0% | |
| ! | AGGGTGTCTTTGCAAAACAG+AGG | - | 56074:4980-4999 | MS.gene84659:intron | 45.0% |
| ! | TTTTTGTTGAAACCGGGTCG+CGG | + | 56074:5526-5545 | MS.gene84659:intergenic | 45.0% |
| !! | ATGCCAAAGGGTGTCAAGAT+CGG | + | 56074:5385-5404 | MS.gene84659:intergenic | 45.0% |
| !! | CATGGGTTGGGATCTGTAAA+AGG | - | 56074:3654-3673 | MS.gene84659:intron | 45.0% |
| !! | TCTTGGTGTTGGTGAACAGT+TGG | - | 56074:3455-3474 | MS.gene84659:intron | 45.0% |
| AGGATCACTGCGGAAATCGT+AGG | - | 56074:5445-5464 | MS.gene84659:intron | 50.0% | |
| ATCGGTACGATCCTACGAGT+TGG | + | 56074:5367-5386 | MS.gene84659:intergenic | 50.0% | |
| CACTGCGGAAATCGTAGGAA+CGG | - | 56074:5450-5469 | MS.gene84659:intron | 50.0% | |
| CAGAGCAATCTGTGTGTGAG+TGG | - | 56074:4665-4684 | MS.gene84659:intron | 50.0% | |
| CCCTTTGGCATGCTAGAGTA+TGG | - | 56074:5394-5413 | MS.gene84659:intron | 50.0% | |
| CGAGATCCTACGCAAGTTTG+GGG | + | 56074:5594-5613 | MS.gene84659:intergenic | 50.0% | |
| CTCGAGATCCTACGCAAGTT+TGG | + | 56074:5596-5615 | MS.gene84659:intergenic | 50.0% | |
| GCTAGAGTATGGTCGGAATC+GGG | - | 56074:5405-5424 | MS.gene84659:intron | 50.0% | |
| GTATGGTCGGAATCGGGATT+TGG | - | 56074:5411-5430 | MS.gene84659:intron | 50.0% | |
| TACGCTGTGTATGGGTATCC+TGG | + | 56074:3368-3387 | MS.gene84659:intergenic | 50.0% | |
| ! | GGACCGTGGGAGTACATAAT+AGG | - | 56074:4347-4366 | MS.gene84659:intron | 50.0% |
| ! | GTACCGATCTTGACACCCTT+TGG | - | 56074:5379-5398 | MS.gene84659:intron | 50.0% |
| ! | GTGCAGGAAGTTCTTGGTGT+TGG | - | 56074:3444-3463 | MS.gene84659:intron | 50.0% |
| ! | GTTATTTCATCGGGACAGGC+AGG | + | 56074:4702-4721 | MS.gene84659:intergenic | 50.0% |
| ! | TTAGCCTGGGAGTTTGGGTT+CGG | - | 56074:6009-6028 | MS.gene84659:intron | 50.0% |
| ! | TTTTGTTGAAACCGGGTCGC+GGG | + | 56074:5525-5544 | MS.gene84659:intergenic | 50.0% |
| !! | ACTATGAAGGCGAGGGTGTT+TGG | - | 56074:5910-5929 | MS.gene84659:intron | 50.0% |
| !! | CTATGAAGGCGAGGGTGTTT+GGG | - | 56074:5911-5930 | MS.gene84659:intron | 50.0% |
| ACTCCTCCCCAAACTTGCGT+AGG | - | 56074:5585-5604 | MS.gene84659:intron | 55.0% | |
| CAAGTTTGGGGAGGAGTCAC+AGG | + | 56074:5582-5601 | MS.gene84659:intergenic | 55.0% | |
| GATCCTACGCAAGTTTGGGG+AGG | + | 56074:5591-5610 | MS.gene84659:intergenic | 55.0% | |
| GGATGGACAATTCTGGCCCT+AGG | - | 56074:5001-5020 | MS.gene84659:intron | 55.0% | |
| TAGGCGCCTCAAACTTCTGC+CGG | - | 56074:5041-5060 | MS.gene84659:intron | 55.0% | |
| TGAGGCTAATGCCTCAGGTG+TGG | + | 56074:5067-5086 | MS.gene84659:intergenic | 55.0% | |
| TGGTCGGAATCGGGATTTGG+TGG | - | 56074:5414-5433 | MS.gene84659:intron | 55.0% | |
| ! | CAGAAGTTTGAGGCGCCTAG+GGG | + | 56074:5040-5059 | MS.gene84659:intergenic | 55.0% |
| ! | GCAGAAGTTTGAGGCGCCTA+GGG | + | 56074:5041-5060 | MS.gene84659:intergenic | 55.0% |
| ! | GGTCGGAATCGGGATTTGGT+GGG | - | 56074:5415-5434 | MS.gene84659:intron | 55.0% |
| !! | AAGGCGAGGGTGTTTGGGTT+CGG | - | 56074:5916-5935 | MS.gene84659:intron | 55.0% |
| !! | GAATCGGGATTTGGTGGGTG+CGG | - | 56074:5420-5439 | MS.gene84659:intron | 55.0% |
| !! | TTTGGGTTCGGTGGAGGGTA+GGG | - | 56074:5928-5947 | MS.gene84659:intron | 55.0% |
| GCAGGTGAGGCTAATGCCTC+AGG | + | 56074:5072-5091 | MS.gene84659:intergenic | 60.0% | |
| GCTAATGCCTCAGGTGTGGC+CGG | + | 56074:5063-5082 | MS.gene84659:intergenic | 60.0% | |
| GTGTGGCCGGCAGAAGTTTG+AGG | + | 56074:5050-5069 | MS.gene84659:intergenic | 60.0% | |
| TCCACCGAACCCAAACTCCC+AGG | + | 56074:6016-6035 | MS.gene84659:intergenic | 60.0% | |
| TCGCGGGACCCGAAACTTCA+AGG | + | 56074:5509-5528 | MS.gene84659:intergenic | 60.0% | |
| ! | AAGTTTGAGGCGCCTAGGGG+CGG | + | 56074:5037-5056 | MS.gene84659:intergenic | 60.0% |
| ! | GGCAGAAGTTTGAGGCGCCT+AGG | + | 56074:5042-5061 | MS.gene84659:intergenic | 60.0% |
| !! | AGGGTGTTTGGGTTCGGTGG+AGG | - | 56074:5922-5941 | MS.gene84659:intron | 60.0% |
| !! | GGGAGTTTGGGTTCGGTGGA+GGG | - | 56074:6016-6035 | MS.gene84659:intron | 60.0% |
| !! | GGGTGTTTGGGTTCGGTGGA+GGG | - | 56074:5923-5942 | MS.gene84659:intron | 60.0% |
| !! | GTTTGGGTTCGGTGGAGGGT+AGG | - | 56074:5927-5946 | MS.gene84659:intron | 60.0% |
| !! | TGGGAGTTTGGGTTCGGTGG+AGG | - | 56074:6015-6034 | MS.gene84659:intron | 60.0% |
| !! | TTGGGTTCGGTGGAGGGTAG+GGG | - | 56074:5929-5948 | MS.gene84659:intron | 60.0% |
| ACTTCTGCCGGCCACACCTG+AGG | - | 56074:5053-5072 | MS.gene84659:intron | 65.0% | |
| CGGTGGAGGGTAGGGGAAGA+AGG | - | 56074:5936-5955 | MS.gene84659:intron | 65.0% | |
| GGGTGCGGTCAGGATCACTG+CGG | - | 56074:5435-5454 | MS.gene84659:intron | 65.0% | |
| ! | AAGTTTCGGGTCCCGCGACC+CGG | - | 56074:5511-5530 | MS.gene84659:intron | 65.0% |
| ! | AGTTTGAGGCGCCTAGGGGC+GGG | + | 56074:5036-5055 | MS.gene84659:intergenic | 65.0% |
| ! | GCCTGGGAGTTTGGGTTCGG+TGG | - | 56074:6012-6031 | MS.gene84659:intron | 65.0% |
| !! | GCGAGGGTGTTTGGGTTCGG+TGG | - | 56074:5919-5938 | MS.gene84659:intron | 65.0% |
| !! | GGGATTTGGTGGGTGCGGTC+AGG | - | 56074:5425-5444 | MS.gene84659:intron | 65.0% |
| !! | GGGCGGGCACGAGGCGCCTA+GGG | + | 56074:5020-5039 | MS.gene84659:intergenic | 80.0% |
| ! | GGCGCCTAGGGGCGGGCACG+AGG | + | 56074:5029-5048 | MS.gene84659:intergenic | 85.0% |
| ! | GGCGCCTCGTGCCCGCCCCT+AGG | - | 56074:5022-5041 | MS.gene84659:intron | 85.0% |
| !! | GGGGCGGGCACGAGGCGCCT+AGG | + | 56074:5021-5040 | MS.gene84659:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 56074 | gene | 3085 | 6715 | 3085 | ID=MS.gene84659 |
| 56074 | mRNA | 3085 | 6715 | 3085 | ID=MS.gene84659.t1;Parent=MS.gene84659 |
| 56074 | exon | 6559 | 6715 | 6559 | ID=MS.gene84659.t1.exon1;Parent=MS.gene84659.t1 |
| 56074 | CDS | 6559 | 6715 | 6559 | ID=cds.MS.gene84659.t1;Parent=MS.gene84659.t1 |
| 56074 | exon | 6320 | 6466 | 6320 | ID=MS.gene84659.t1.exon2;Parent=MS.gene84659.t1 |
| 56074 | CDS | 6320 | 6466 | 6320 | ID=cds.MS.gene84659.t1;Parent=MS.gene84659.t1 |
| 56074 | exon | 3085 | 3140 | 3085 | ID=MS.gene84659.t1.exon3;Parent=MS.gene84659.t1 |
| 56074 | CDS | 3085 | 3140 | 3085 | ID=cds.MS.gene84659.t1;Parent=MS.gene84659.t1 |
| Gene Sequence |
| Protein sequence |
