Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84702.t1 | AES72175.1 | 87.2 | 344 | 25 | 1 | 1 | 344 | 121 | 445 | 2.00E-174 | 621.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84702.t1 | P61871 | 29.0 | 214 | 115 | 8 | 35 | 240 | 150 | 334 | 7.2e-11 | 69.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84702.t1 | G7J382 | 87.2 | 344 | 25 | 1 | 1 | 344 | 121 | 445 | 1.5e-174 | 621.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055056 | MS.gene84702 | 0.805123 | 1.55E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84702.t1 | MTR_3g086880 | 87.209 | 344 | 25 | 1 | 1 | 344 | 121 | 445 | 0.0 | 617 |
| MS.gene84702.t1 | MTR_5g017260 | 59.412 | 340 | 136 | 2 | 1 | 340 | 125 | 462 | 5.82e-144 | 415 |
| MS.gene84702.t1 | MTR_1g019270 | 54.118 | 340 | 154 | 2 | 1 | 340 | 122 | 459 | 1.19e-127 | 374 |
| MS.gene84702.t1 | MTR_7g117505 | 42.571 | 350 | 172 | 3 | 22 | 345 | 150 | 496 | 5.15e-94 | 289 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84702.t1 | AT5G67050 | 54.783 | 345 | 147 | 5 | 1 | 337 | 119 | 462 | 2.65e-130 | 381 |
| MS.gene84702.t1 | AT5G42930 | 50.729 | 343 | 164 | 2 | 1 | 340 | 121 | 461 | 2.64e-124 | 365 |
| MS.gene84702.t1 | AT1G45201 | 48.387 | 341 | 169 | 4 | 2 | 340 | 127 | 462 | 1.44e-110 | 330 |
| MS.gene84702.t1 | AT1G45201 | 48.387 | 341 | 169 | 4 | 2 | 340 | 152 | 487 | 2.20e-110 | 331 |
| MS.gene84702.t1 | AT1G56630 | 47.309 | 353 | 170 | 4 | 1 | 339 | 121 | 471 | 3.72e-110 | 330 |
| MS.gene84702.t1 | AT3G14360 | 43.675 | 332 | 172 | 2 | 22 | 338 | 177 | 508 | 4.34e-95 | 292 |
| MS.gene84702.t1 | AT5G42930 | 50.000 | 266 | 128 | 2 | 1 | 263 | 121 | 384 | 2.04e-90 | 276 |
| MS.gene84702.t1 | AT1G45201 | 48.864 | 264 | 128 | 4 | 2 | 263 | 127 | 385 | 1.05e-82 | 256 |
Find 74 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCATGGTTGGAGCTTCC+TGG | 0.307084 | 3.4:-80852572 | MS.gene84702:CDS |
| AACACAATGTCCTTTATATC+AGG | 0.310096 | 3.4:+80852155 | None:intergenic |
| GCATGAGGAGTCATTTCTTT+TGG | 0.319373 | 3.4:-80852321 | MS.gene84702:CDS |
| CTTCAAGGGGTTTACACATT+TGG | 0.328267 | 3.4:-80852293 | MS.gene84702:CDS |
| TGATTTGTTTCAATTTGTTT+AGG | 0.333018 | 3.4:+80852485 | None:intergenic |
| ACCTACATAGTAACCTTTAG+AGG | 0.371290 | 3.4:-80852638 | MS.gene84702:CDS |
| GAGAAGAATTTGAAAGATAA+TGG | 0.384043 | 3.4:-80852230 | MS.gene84702:CDS |
| ACATTGTGTTTAAGCACTTT+GGG | 0.384637 | 3.4:-80852142 | MS.gene84702:CDS |
| GGTAAGGTTAACATAATCTT+GGG | 0.389871 | 3.4:+80851783 | None:intergenic |
| TTAAGAGCATTTCGGCTTGT+TGG | 0.392156 | 3.4:-80851838 | MS.gene84702:CDS |
| CTTGTTGGCTTACTAGTGCC+TGG | 0.403502 | 3.4:-80851823 | MS.gene84702:CDS |
| TAGGTTTCCTCCTGATATAA+AGG | 0.410316 | 3.4:-80852165 | MS.gene84702:CDS |
| TGGTTGGAGCTTCCTGGACT+TGG | 0.410975 | 3.4:-80852566 | MS.gene84702:CDS |
| TAATGCTGCTTTGTTTATGA+TGG | 0.415323 | 3.4:-80855817 | MS.gene84702:CDS |
| GACATTGTGTTTAAGCACTT+TGG | 0.419779 | 3.4:-80852143 | MS.gene84702:CDS |
| GCTGGTTTCATGAAAGCCTT+AGG | 0.419839 | 3.4:-80852533 | MS.gene84702:CDS |
| TTGTGGCATGCGGTGACTAC+TGG | 0.426475 | 3.4:-80855358 | MS.gene84702:CDS |
| TCGAGAAAATTGATCCCAAC+CGG | 0.427082 | 3.4:+80851761 | None:intergenic |
| TAATCTTGGGGTAAGTGATT+AGG | 0.433362 | 3.4:+80851796 | None:intergenic |
| TATGTTAACCTTACCCGGTT+GGG | 0.444416 | 3.4:-80851775 | MS.gene84702:CDS |
| AAATAACTCGGTTCCTCTAA+AGG | 0.448719 | 3.4:+80852625 | None:intergenic |
| GGGTAAGGTTAACATAATCT+TGG | 0.451197 | 3.4:+80851782 | None:intergenic |
| AAAGCAAAGTTTATATTGAC+TGG | 0.451591 | 3.4:-80852395 | MS.gene84702:CDS |
| GTTGCTTCTTTGTAAACCTA+AGG | 0.452412 | 3.4:+80852517 | None:intergenic |
| TGAAACTTGGCAGATTATCA+AGG | 0.466744 | 3.4:-80852713 | MS.gene84702:intron |
| GTTATTTGATGCCGAACAAT+GGG | 0.468136 | 3.4:-80852609 | MS.gene84702:CDS |
| ACAATCACCTGCCCATTGTT+CGG | 0.479610 | 3.4:+80852598 | None:intergenic |
| AGTAGTAAGCTTCAAGTGTA+TGG | 0.481831 | 3.4:+80852459 | None:intergenic |
| AAATTGATCCCAACCGGGTA+AGG | 0.484292 | 3.4:+80851767 | None:intergenic |
| ATAGCTATGATATTATTCCT+AGG | 0.487380 | 3.4:-80852184 | MS.gene84702:CDS |
| TTTACTAAAGAAACATTTGA+AGG | 0.493912 | 3.4:-80852426 | MS.gene84702:CDS |
| AATATGTAATCTCCAACTCT+TGG | 0.498499 | 3.4:+80852266 | None:intergenic |
| TATGGACAAGCGAGTGGAGT+TGG | 0.502914 | 3.4:-80855871 | MS.gene84702:CDS |
| TTACATATTTGCTCAATACA+TGG | 0.503818 | 3.4:-80852252 | MS.gene84702:CDS |
| ATATTGACTGGTCACAGTCT+AGG | 0.505731 | 3.4:-80852383 | MS.gene84702:CDS |
| ACATTTGGTCAACCAAGAGT+TGG | 0.509933 | 3.4:-80852278 | MS.gene84702:CDS |
| GCTCATAAGGAGCTTCACTA+TGG | 0.518248 | 3.4:-80851899 | MS.gene84702:CDS |
| ACCCATCCCTCTTGATACTC+AGG | 0.520693 | 3.4:+80851862 | None:intergenic |
| TTCACTATGGTGTCTAGGTA+TGG | 0.526854 | 3.4:-80851886 | MS.gene84702:CDS |
| GGGACATAGTTGAAAATCGT+TGG | 0.527074 | 3.4:-80855758 | MS.gene84702:CDS |
| GGAGCTTCACTATGGTGTCT+AGG | 0.529109 | 3.4:-80851891 | MS.gene84702:CDS |
| TACAAAGAAGCAACATGGGT+TGG | 0.532370 | 3.4:-80852508 | MS.gene84702:CDS |
| AGTTATTTGATGCCGAACAA+TGG | 0.541427 | 3.4:-80852610 | MS.gene84702:CDS |
| GACCTGAGTATCAAGAGGGA+TGG | 0.541599 | 3.4:-80851864 | MS.gene84702:CDS |
| AAGATTATGTTAACCTTACC+CGG | 0.543967 | 3.4:-80851780 | MS.gene84702:CDS |
| TTATGTTAACCTTACCCGGT+TGG | 0.555126 | 3.4:-80851776 | MS.gene84702:CDS |
| TTTGATGCCGAACAATGGGC+AGG | 0.556915 | 3.4:-80852605 | MS.gene84702:CDS |
| CATAGTTGAAAATCGTTGGA+AGG | 0.564748 | 3.4:-80855754 | MS.gene84702:intron |
| GGTAAGTGATTAGGTACTCC+AGG | 0.565069 | 3.4:+80851805 | None:intergenic |
| TTACTAAAGAAACATTTGAA+GGG | 0.565367 | 3.4:-80852425 | MS.gene84702:CDS |
| TCCTCTAAAGGTTACTATGT+AGG | 0.570527 | 3.4:+80852637 | None:intergenic |
| GAGTTGGACAAAAGCATCAA+AGG | 0.572010 | 3.4:-80855855 | MS.gene84702:CDS |
| TCATGCAACATCAATATCGC+AGG | 0.573993 | 3.4:+80852338 | None:intergenic |
| ACCTGAGTATCAAGAGGGAT+GGG | 0.576968 | 3.4:-80851863 | MS.gene84702:CDS |
| AGGTTTACAAAGAAGCAACA+TGG | 0.584733 | 3.4:-80852513 | MS.gene84702:CDS |
| TGATAGAAACTATAATGGCA+AGG | 0.584877 | 3.4:-80852105 | MS.gene84702:intron |
| CAGGTGATTGTGATATCTCA+TGG | 0.585512 | 3.4:-80852586 | MS.gene84702:CDS |
| TTTATATCAGGAGGAAACCT+AGG | 0.585879 | 3.4:+80852167 | None:intergenic |
| ACAAAGCAGCATTATACTTG+AGG | 0.592763 | 3.4:+80855826 | None:intergenic |
| TTGTTCGGCATCAAATAACT+CGG | 0.595760 | 3.4:+80852613 | None:intergenic |
| CGAGAAAATTGATCCCAACC+GGG | 0.608715 | 3.4:+80851762 | None:intergenic |
| GGTTTACAAAGAAGCAACAT+GGG | 0.611206 | 3.4:-80852512 | MS.gene84702:CDS |
| TGGTCATATGGACAAGCGAG+TGG | 0.611878 | 3.4:-80855877 | None:intergenic |
| TGATTGTGATATCTCATGGT+TGG | 0.618477 | 3.4:-80852582 | MS.gene84702:CDS |
| GTATGGACCTGAGTATCAAG+AGG | 0.628629 | 3.4:-80851869 | MS.gene84702:CDS |
| ACAATGTCCTTTATATCAGG+AGG | 0.632118 | 3.4:+80852158 | None:intergenic |
| AGGTTACTATGTAGGTGTCG+TGG | 0.652026 | 3.4:+80852645 | None:intergenic |
| TTGACTGGTCACAGTCTAGG+TGG | 0.654349 | 3.4:-80852380 | MS.gene84702:CDS |
| TCTTGCATAGATGGAAGTTG+TGG | 0.658461 | 3.4:-80855375 | MS.gene84702:intron |
| TGCGATATTGATGTTGCATG+AGG | 0.662471 | 3.4:-80852336 | MS.gene84702:CDS |
| GCATGCGGTGACTACTGGAA+TGG | 0.666193 | 3.4:-80855353 | MS.gene84702:intron |
| TATGGACCTGAGTATCAAGA+GGG | 0.673621 | 3.4:-80851868 | MS.gene84702:CDS |
| GTAAGGTTAACATAATCTTG+GGG | 0.683904 | 3.4:+80851784 | None:intergenic |
| TAGATGGAAGTTGTGGCATG+CGG | 0.719132 | 3.4:-80855368 | MS.gene84702:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAATAAAATTATTTTT+TGG | - | chr3.4:80853874-80853893 | MS.gene84702:intron | 0.0% |
| !! | ATAAAAATTAAATTTGATCA+TGG | + | chr3.4:80852746-80852765 | None:intergenic | 10.0% |
| !! | ATTGATACATAAAAAATTAT+GGG | + | chr3.4:80854276-80854295 | None:intergenic | 10.0% |
| !! | TTATAATTTACCTATAAAAT+TGG | - | chr3.4:80852173-80852192 | MS.gene84702:CDS | 10.0% |
| !!! | AATCAAATTATTTGTTAATT+TGG | + | chr3.4:80853720-80853739 | None:intergenic | 10.0% |
| !!! | AATTTATTTTAGTTTAAATG+CGG | - | chr3.4:80854703-80854722 | MS.gene84702:intron | 10.0% |
| !!! | ACAAAATAAAAGTTTTTTTT+TGG | + | chr3.4:80853849-80853868 | None:intergenic | 10.0% |
| !! | AAAAATAAATTGTGCTAAAT+AGG | - | chr3.4:80854384-80854403 | MS.gene84702:intron | 15.0% |
| !! | AATATTTGTATTATGAATAC+AGG | - | chr3.4:80852394-80852413 | MS.gene84702:CDS | 15.0% |
| !! | ATAGATATTAGAAAATATAC+GGG | + | chr3.4:80854522-80854541 | None:intergenic | 15.0% |
| !! | CATTGATACATAAAAAATTA+TGG | + | chr3.4:80854277-80854296 | None:intergenic | 15.0% |
| !! | GATAGATATTAGAAAATATA+CGG | + | chr3.4:80854523-80854542 | None:intergenic | 15.0% |
| !! | GGTAAATCTAAAAAAAAAAA+GGG | + | chr3.4:80854143-80854162 | None:intergenic | 15.0% |
| !! | TGGTAAATCTAAAAAAAAAA+AGG | + | chr3.4:80854144-80854163 | None:intergenic | 15.0% |
| !!! | ATTTATTTTAGTTTAAATGC+GGG | - | chr3.4:80854704-80854723 | MS.gene84702:intron | 15.0% |
| !!! | CTTGTTTGTATTTTTTTTTT+TGG | + | chr3.4:80852464-80852483 | None:intergenic | 15.0% |
| !!! | TTGCATTTTTCTTTTATTAA+GGG | + | chr3.4:80853463-80853482 | None:intergenic | 15.0% |
| !!! | TTTATATCAAACTCTAAAAA+AGG | + | chr3.4:80853755-80853774 | None:intergenic | 15.0% |
| !!! | TTTGCATTTTTCTTTTATTA+AGG | + | chr3.4:80853464-80853483 | None:intergenic | 15.0% |
| !!! | TTTTTTGATAGAAACTATAA+TGG | - | chr3.4:80855510-80855529 | MS.gene84702:intron | 15.0% |
| !! | AAATACAAACAAGAATGATA+TGG | - | chr3.4:80852471-80852490 | MS.gene84702:CDS | 20.0% |
| !! | AATACAAACAAGAATGATAT+GGG | - | chr3.4:80852472-80852491 | MS.gene84702:CDS | 20.0% |
| !! | AGATTTACAAAGAAAGATAT+TGG | - | chr3.4:80853126-80853145 | MS.gene84702:intron | 20.0% |
| !! | ATTAATTCATAGTTGACAAA+AGG | - | chr3.4:80852149-80852168 | MS.gene84702:CDS | 20.0% |
| !! | ATTTGAACAATCATTTGATT+GGG | - | chr3.4:80853085-80853104 | MS.gene84702:intron | 20.0% |
| !! | TAAATACACTTGAGTTAAAA+TGG | + | chr3.4:80855586-80855605 | None:intergenic | 20.0% |
| !! | TATTTGAACAATCATTTGAT+TGG | - | chr3.4:80853084-80853103 | MS.gene84702:intron | 20.0% |
| !! | TTACTAAAGAAACATTTGAA+GGG | - | chr3.4:80855195-80855214 | MS.gene84702:intron | 20.0% |
| !! | TTGATTGATACATAGATAAA+AGG | + | chr3.4:80854110-80854129 | None:intergenic | 20.0% |
| !! | TTTACTAAAGAAACATTTGA+AGG | - | chr3.4:80855194-80855213 | MS.gene84702:intron | 20.0% |
| !!! | AAAGAAAAGTAGTTTTTGTT+TGG | + | chr3.4:80855662-80855681 | None:intergenic | 20.0% |
| !!! | AAGGGATAAATATTTCTAAT+TGG | + | chr3.4:80854431-80854450 | None:intergenic | 20.0% |
| !!! | ATAATAGTAAGGTTGATTAT+TGG | - | chr3.4:80854876-80854895 | MS.gene84702:intron | 20.0% |
| !!! | GTCTTTTATAAAAGTGTAAA+AGG | + | chr3.4:80852922-80852941 | None:intergenic | 20.0% |
| !!! | TGATTTGTTTCAATTTGTTT+AGG | + | chr3.4:80855138-80855157 | None:intergenic | 20.0% |
| !!! | TTTTTTCGTTAGCATATTAT+TGG | - | chr3.4:80851988-80852007 | MS.gene84702:intron | 20.0% |
| !!! | TTTTTTTTTAGAGAACAACA+TGG | + | chr3.4:80852856-80852875 | None:intergenic | 20.0% |
| ! | AAAGCAAAGTTTATATTGAC+TGG | - | chr3.4:80855225-80855244 | MS.gene84702:intron | 25.0% |
| ! | AATCATACAAAAAAAATCGC+GGG | + | chr3.4:80854486-80854505 | None:intergenic | 25.0% |
| ! | AATGCAAACACAACAATAAT+AGG | - | chr3.4:80853254-80853273 | MS.gene84702:intron | 25.0% |
| ! | ATAGCTATGATATTATTCCT+AGG | - | chr3.4:80855436-80855455 | MS.gene84702:intron | 25.0% |
| ! | ATGAATTCTCTTCTTGAAAT+CGG | - | chr3.4:80852049-80852068 | MS.gene84702:intron | 25.0% |
| ! | ATTAAATTTGATCATGGTTC+TGG | + | chr3.4:80852740-80852759 | None:intergenic | 25.0% |
| ! | CATTGATACCTAAAAAACAT+GGG | + | chr3.4:80854182-80854201 | None:intergenic | 25.0% |
| ! | GAATCATACAAAAAAAATCG+CGG | + | chr3.4:80854487-80854506 | None:intergenic | 25.0% |
| ! | GAGAAGAATTTGAAAGATAA+TGG | - | chr3.4:80855390-80855409 | MS.gene84702:intron | 25.0% |
| ! | GTTTATAAATGGGGATAATT+CGG | + | chr3.4:80852718-80852737 | None:intergenic | 25.0% |
| ! | TAAGTTGTGGAAATACATTA+GGG | - | chr3.4:80854605-80854624 | MS.gene84702:intron | 25.0% |
| ! | TAGTAAAAAATATCTGCAAC+AGG | - | chr3.4:80852364-80852383 | MS.gene84702:CDS | 25.0% |
| ! | TATGCTCAAATGATATGAAT+GGG | + | chr3.4:80852346-80852365 | None:intergenic | 25.0% |
| ! | TCAAAGCAATAGAAAGAAAA+GGG | - | chr3.4:80853157-80853176 | MS.gene84702:intron | 25.0% |
| ! | TCATTTGATTGGGAATTTAT+AGG | - | chr3.4:80853095-80853114 | MS.gene84702:intron | 25.0% |
| ! | TGCTGAAAAGAAACTAATTA+AGG | + | chr3.4:80851957-80851976 | None:intergenic | 25.0% |
| ! | TTACATATTTGCTCAATACA+TGG | - | chr3.4:80855368-80855387 | MS.gene84702:CDS | 25.0% |
| ! | TTTATAAATGGGGATAATTC+GGG | + | chr3.4:80852717-80852736 | None:intergenic | 25.0% |
| ! | TTTCTCCAACAAGTAATTTA+TGG | + | chr3.4:80853028-80853047 | None:intergenic | 25.0% |
| !!! | AACAACAATCTGACTTTTTT+TGG | + | chr3.4:80853601-80853620 | None:intergenic | 25.0% |
| !!! | AATTAGTTTCTTTTCAGCAA+AGG | - | chr3.4:80851958-80851977 | MS.gene84702:CDS | 25.0% |
| !!! | ATATTTCTCCCATGTTTTTT+AGG | - | chr3.4:80854171-80854190 | MS.gene84702:intron | 25.0% |
| !!! | ATTAGTTTCTTTTCAGCAAA+GGG | - | chr3.4:80851959-80851978 | MS.gene84702:CDS | 25.0% |
| !!! | CATCTCTTAATTTTTTTTCC+AGG | + | chr3.4:80853670-80853689 | None:intergenic | 25.0% |
| !!! | GTATCAATGGCTATTTTTTT+CGG | - | chr3.4:80854193-80854212 | MS.gene84702:intron | 25.0% |
| !!! | TATATGTGCGATTTTAGAAA+TGG | - | chr3.4:80852544-80852563 | MS.gene84702:CDS | 25.0% |
| !!! | TTTGGTTCTTGATTAGAATA+TGG | + | chr3.4:80853583-80853602 | None:intergenic | 25.0% |
| AAAGTGTAAAAGGTCAAAGT+GGG | + | chr3.4:80852912-80852931 | None:intergenic | 30.0% | |
| AACACAATGTCCTTTATATC+AGG | + | chr3.4:80855468-80855487 | None:intergenic | 30.0% | |
| AAGATTATGTTAACCTTACC+CGG | - | chr3.4:80855840-80855859 | MS.gene84702:CDS | 30.0% | |
| AATATGTAATCTCCAACTCT+TGG | + | chr3.4:80855357-80855376 | None:intergenic | 30.0% | |
| ACACTTAGCATTATGTAAAG+AGG | + | chr3.4:80853064-80853083 | None:intergenic | 30.0% | |
| ACATTGTGTTTAAGCACTTT+GGG | - | chr3.4:80855478-80855497 | MS.gene84702:intron | 30.0% | |
| AGATTTAGACCTTAAGTAAG+TGG | + | chr3.4:80852117-80852136 | None:intergenic | 30.0% | |
| ATGGGAGAAATATTTGTCAT+TGG | + | chr3.4:80854164-80854183 | None:intergenic | 30.0% | |
| CACTTAGCATTATGTAAAGA+GGG | + | chr3.4:80853063-80853082 | None:intergenic | 30.0% | |
| CCATTGATACCTAAAAAACA+TGG | + | chr3.4:80854183-80854202 | None:intergenic | 30.0% | |
| CCTGGATCAAAATAATAGTA+AGG | - | chr3.4:80854865-80854884 | MS.gene84702:intron | 30.0% | |
| CGAGACATTTATTTGTTTGA+TGG | + | chr3.4:80852628-80852647 | None:intergenic | 30.0% | |
| CTAAGTTGTGGAAATACATT+AGG | - | chr3.4:80854604-80854623 | MS.gene84702:intron | 30.0% | |
| CTATGCTCAAATGATATGAA+TGG | + | chr3.4:80852347-80852366 | None:intergenic | 30.0% | |
| GATGACAATGAATAAGTTCT+AGG | + | chr3.4:80854846-80854865 | None:intergenic | 30.0% | |
| GGTAAGGTTAACATAATCTT+GGG | + | chr3.4:80855840-80855859 | None:intergenic | 30.0% | |
| GTAAGGTTAACATAATCTTG+GGG | + | chr3.4:80855839-80855858 | None:intergenic | 30.0% | |
| GTCAAAGCAATAGAAAGAAA+AGG | - | chr3.4:80853156-80853175 | MS.gene84702:intron | 30.0% | |
| TAAATGCGGGTAATGAATAT+GGG | - | chr3.4:80854717-80854736 | MS.gene84702:intron | 30.0% | |
| TCGTTAGCATATTATTGGTA+TGG | - | chr3.4:80851993-80852012 | MS.gene84702:intron | 30.0% | |
| TGATAGAAACTATAATGGCA+AGG | - | chr3.4:80855515-80855534 | MS.gene84702:intron | 30.0% | |
| TTAAATGCGGGTAATGAATA+TGG | - | chr3.4:80854716-80854735 | MS.gene84702:intron | 30.0% | |
| ! | AAAAGTGTAAAAGGTCAAAG+TGG | + | chr3.4:80852913-80852932 | None:intergenic | 30.0% |
| ! | AATGTTGTTTGATGTCATTG+TGG | - | chr3.4:80852955-80852974 | MS.gene84702:intron | 30.0% |
| ! | ACGAGAATGAAGCTTTTATA+CGG | - | chr3.4:80851841-80851860 | MS.gene84702:CDS | 30.0% |
| ! | ATGTTGTTTGATGTCATTGT+GGG | - | chr3.4:80852956-80852975 | MS.gene84702:intron | 30.0% |
| ! | ATTGGTTGGTATTTGAAACT+TGG | - | chr3.4:80854894-80854913 | MS.gene84702:intron | 30.0% |
| ! | ATTTTCTCGAAGATACATTG+AGG | - | chr3.4:80855872-80855891 | MS.gene84702:CDS | 30.0% |
| ! | CAAACTCTAAAAAAGGTAAG+TGG | + | chr3.4:80853748-80853767 | None:intergenic | 30.0% |
| ! | TAGTAAGGTTGATTATTGGT+TGG | - | chr3.4:80854880-80854899 | MS.gene84702:intron | 30.0% |
| !! | AATGTCAGTGAATGCTTTTT+GGG | - | chr3.4:80855697-80855716 | MS.gene84702:intron | 30.0% |
| !! | ATGGTTCTGGTTTATAAATG+GGG | + | chr3.4:80852727-80852746 | None:intergenic | 30.0% |
| !! | ATTTCCATAGTGGATTCAAA+GGG | - | chr3.4:80854580-80854599 | MS.gene84702:intron | 30.0% |
| !! | CATGGTTCTGGTTTATAAAT+GGG | + | chr3.4:80852728-80852747 | None:intergenic | 30.0% |
| !! | GACAATTTACTTTTAGCTAG+TGG | + | chr3.4:80852199-80852218 | None:intergenic | 30.0% |
| !! | TAATGCTGCTTTGTTTATGA+TGG | - | chr3.4:80851803-80851822 | MS.gene84702:CDS | 30.0% |
| !! | TCATGGTTCTGGTTTATAAA+TGG | + | chr3.4:80852729-80852748 | None:intergenic | 30.0% |
| !!! | CCATGTTTTTTAGGTATCAA+TGG | - | chr3.4:80854180-80854199 | MS.gene84702:intron | 30.0% |
| !!! | CCTTACTATTATTTTGATCC+AGG | + | chr3.4:80854868-80854887 | None:intergenic | 30.0% |
| !!! | TTTTTTGTCTCTCCAAATTG+CGG | - | chr3.4:80854801-80854820 | MS.gene84702:intron | 30.0% |
| AAATAACTCGGTTCCTCTAA+AGG | + | chr3.4:80854998-80855017 | None:intergenic | 35.0% | |
| ACAAAGCAGCATTATACTTG+AGG | + | chr3.4:80851797-80851816 | None:intergenic | 35.0% | |
| ACAATGTCCTTTATATCAGG+AGG | + | chr3.4:80855465-80855484 | None:intergenic | 35.0% | |
| ACACATGAACCACTTACTTA+AGG | - | chr3.4:80852105-80852124 | MS.gene84702:intron | 35.0% | |
| ACCTACATAGTAACCTTTAG+AGG | - | chr3.4:80854982-80855001 | MS.gene84702:intron | 35.0% | |
| AGGAATAAAGTCATCTTCGA+AGG | + | chr3.4:80852803-80852822 | None:intergenic | 35.0% | |
| AGGTTTACAAAGAAGCAACA+TGG | - | chr3.4:80855107-80855126 | MS.gene84702:intron | 35.0% | |
| AGTAGTAAGCTTCAAGTGTA+TGG | + | chr3.4:80855164-80855183 | None:intergenic | 35.0% | |
| AGTTATTTGATGCCGAACAA+TGG | - | chr3.4:80855010-80855029 | MS.gene84702:intron | 35.0% | |
| ATCAGATACACAACTTTAGC+AGG | - | chr3.4:80852764-80852783 | MS.gene84702:intron | 35.0% | |
| ATGATATGAATGGGAGAGTA+TGG | + | chr3.4:80852337-80852356 | None:intergenic | 35.0% | |
| CATAGTTGAAAATCGTTGGA+AGG | - | chr3.4:80851866-80851885 | MS.gene84702:CDS | 35.0% | |
| GAACTTATTCATTGTCATCC+TGG | - | chr3.4:80854847-80854866 | MS.gene84702:intron | 35.0% | |
| GACATTGTGTTTAAGCACTT+TGG | - | chr3.4:80855477-80855496 | MS.gene84702:intron | 35.0% | |
| GGGTAAGGTTAACATAATCT+TGG | + | chr3.4:80855841-80855860 | None:intergenic | 35.0% | |
| GGTTTACAAAGAAGCAACAT+GGG | - | chr3.4:80855108-80855127 | MS.gene84702:intron | 35.0% | |
| GTTATTTGATGCCGAACAAT+GGG | - | chr3.4:80855011-80855030 | MS.gene84702:intron | 35.0% | |
| GTTGCTTCTTTGTAAACCTA+AGG | + | chr3.4:80855106-80855125 | None:intergenic | 35.0% | |
| TAAGATCTCTACTGTAGTCT+GGG | - | chr3.4:80854772-80854791 | MS.gene84702:intron | 35.0% | |
| TAATCTTGGGGTAAGTGATT+AGG | + | chr3.4:80855827-80855846 | None:intergenic | 35.0% | |
| TAGGTTTCCTCCTGATATAA+AGG | - | chr3.4:80855455-80855474 | MS.gene84702:intron | 35.0% | |
| TCACGCCATAAATTACTTGT+TGG | - | chr3.4:80853020-80853039 | MS.gene84702:intron | 35.0% | |
| TGAAACTTGGCAGATTATCA+AGG | - | chr3.4:80854907-80854926 | MS.gene84702:intron | 35.0% | |
| TGATTGTGATATCTCATGGT+TGG | - | chr3.4:80855038-80855057 | MS.gene84702:intron | 35.0% | |
| TGTAAGATTACACCACCAAT+TGG | - | chr3.4:80852680-80852699 | MS.gene84702:CDS | 35.0% | |
| TTAAGATCTCTACTGTAGTC+TGG | - | chr3.4:80854771-80854790 | MS.gene84702:intron | 35.0% | |
| TTAGCATTATGTAAAGAGGG+AGG | + | chr3.4:80853060-80853079 | None:intergenic | 35.0% | |
| TTGTTCGGCATCAAATAACT+CGG | + | chr3.4:80855010-80855029 | None:intergenic | 35.0% | |
| TTTATATCAGGAGGAAACCT+AGG | + | chr3.4:80855456-80855475 | None:intergenic | 35.0% | |
| ! | AAGTGGGTGAATTTTCAACA+TGG | + | chr3.4:80852896-80852915 | None:intergenic | 35.0% |
| ! | CAATGTCAGTGAATGCTTTT+TGG | - | chr3.4:80855696-80855715 | MS.gene84702:intron | 35.0% |
| ! | CGAGAATGAAGCTTTTATAC+GGG | - | chr3.4:80851842-80851861 | MS.gene84702:CDS | 35.0% |
| ! | GGACACAAATTTGTCTTTTG+TGG | + | chr3.4:80853983-80854002 | None:intergenic | 35.0% |
| ! | GTAGTTGGATTGGAGTAAAT+GGG | + | chr3.4:80852987-80853006 | None:intergenic | 35.0% |
| ! | GTGTTCAATTTTCCAATTGG+TGG | + | chr3.4:80852695-80852714 | None:intergenic | 35.0% |
| ! | TAGCTAGTGGCCAATTTTAT+AGG | + | chr3.4:80852186-80852205 | None:intergenic | 35.0% |
| ! | TCCTCTAAAGGTTACTATGT+AGG | + | chr3.4:80854986-80855005 | None:intergenic | 35.0% |
| ! | TGTTGTAGTGTGGTGTTTTT+AGG | + | chr3.4:80852831-80852850 | None:intergenic | 35.0% |
| ! | TGTTGTTTGATGTCATTGTG+GGG | - | chr3.4:80852957-80852976 | MS.gene84702:intron | 35.0% |
| ! | TTTTTGTCTCTCCAAATTGC+GGG | - | chr3.4:80854802-80854821 | MS.gene84702:intron | 35.0% |
| ! | TTTTTGTGCTCTTGCATAGA+TGG | - | chr3.4:80852236-80852255 | MS.gene84702:CDS | 35.0% |
| !! | ACATTTTCAGAAAGTGCAAG+AGG | - | chr3.4:80855634-80855653 | MS.gene84702:intron | 35.0% |
| !! | CAAAAAGCATTCACTGACAT+TGG | + | chr3.4:80855698-80855717 | None:intergenic | 35.0% |
| !! | CATTTCCATAGTGGATTCAA+AGG | - | chr3.4:80854579-80854598 | MS.gene84702:intron | 35.0% |
| !! | CTCACTTAAGCTCTAAAATG+AGG | + | chr3.4:80853319-80853338 | None:intergenic | 35.0% |
| !! | GTTGTAGTGTGGTGTTTTTA+GGG | + | chr3.4:80852830-80852849 | None:intergenic | 35.0% |
| !!! | GATGGGTTTTAAGAGCATTT+CGG | - | chr3.4:80855774-80855793 | MS.gene84702:CDS | 35.0% |
| AACATATCATCTCTCCAACC+AGG | - | chr3.4:80853391-80853410 | MS.gene84702:intron | 40.0% | |
| ACATATCATCTCTCCAACCA+GGG | - | chr3.4:80853392-80853411 | MS.gene84702:intron | 40.0% | |
| ACATTTGGTCAACCAAGAGT+TGG | - | chr3.4:80855342-80855361 | MS.gene84702:intron | 40.0% | |
| AGCGTACATGTATCACATGT+GGG | - | chr3.4:80854746-80854765 | MS.gene84702:intron | 40.0% | |
| AGTTGTGTCTCCACTTTGAT+TGG | + | chr3.4:80853423-80853442 | None:intergenic | 40.0% | |
| CAATCCAACTACGTACTTCA+CGG | - | chr3.4:80852995-80853014 | MS.gene84702:intron | 40.0% | |
| CACAATGTTGAAGTTGAACC+TGG | - | chr3.4:80853649-80853668 | MS.gene84702:intron | 40.0% | |
| CAGGTGATTGTGATATCTCA+TGG | - | chr3.4:80855034-80855053 | MS.gene84702:intron | 40.0% | |
| CAGGTTCAACTTCAACATTG+TGG | + | chr3.4:80853651-80853670 | None:intergenic | 40.0% | |
| CGTATGTGTCCACAACTAAA+CGG | + | chr3.4:80852029-80852048 | None:intergenic | 40.0% | |
| CTCAACGATCATTTCCATAG+TGG | - | chr3.4:80854570-80854589 | MS.gene84702:intron | 40.0% | |
| CTTCAAGGGGTTTACACATT+TGG | - | chr3.4:80855327-80855346 | MS.gene84702:intron | 40.0% | |
| GATTCAAAGGGTCTAAGTTG+TGG | - | chr3.4:80854592-80854611 | MS.gene84702:intron | 40.0% | |
| GGGACATAGTTGAAAATCGT+TGG | - | chr3.4:80851862-80851881 | MS.gene84702:CDS | 40.0% | |
| GTTGTGTCTCCACTTTGATT+GGG | + | chr3.4:80853422-80853441 | None:intergenic | 40.0% | |
| TACAAAGAAGCAACATGGGT+TGG | - | chr3.4:80855112-80855131 | MS.gene84702:intron | 40.0% | |
| TAGACCCTTTGAATCCACTA+TGG | + | chr3.4:80854587-80854606 | None:intergenic | 40.0% | |
| TATGGACCTGAGTATCAAGA+GGG | - | chr3.4:80855752-80855771 | MS.gene84702:intron | 40.0% | |
| TATGTTAACCTTACCCGGTT+GGG | - | chr3.4:80855845-80855864 | MS.gene84702:CDS | 40.0% | |
| TCATGCAACATCAATATCGC+AGG | + | chr3.4:80855285-80855304 | None:intergenic | 40.0% | |
| TCGAGAAAATTGATCCCAAC+CGG | + | chr3.4:80855862-80855881 | None:intergenic | 40.0% | |
| TCTTGCATAGATGGAAGTTG+TGG | - | chr3.4:80852245-80852264 | MS.gene84702:CDS | 40.0% | |
| TGCGATATTGATGTTGCATG+AGG | - | chr3.4:80855284-80855303 | MS.gene84702:intron | 40.0% | |
| TTATGTTAACCTTACCCGGT+TGG | - | chr3.4:80855844-80855863 | MS.gene84702:CDS | 40.0% | |
| TTGTGTCTCCACTTTGATTG+GGG | + | chr3.4:80853421-80853440 | None:intergenic | 40.0% | |
| ! | ATATTGACTGGTCACAGTCT+AGG | - | chr3.4:80855237-80855256 | MS.gene84702:intron | 40.0% |
| ! | CGGGTGTTCAATTTTCCAAT+TGG | + | chr3.4:80852698-80852717 | None:intergenic | 40.0% |
| ! | CGTAGTTGGATTGGAGTAAA+TGG | + | chr3.4:80852988-80853007 | None:intergenic | 40.0% |
| ! | GCATGAGGAGTCATTTCTTT+TGG | - | chr3.4:80855299-80855318 | MS.gene84702:intron | 40.0% |
| !! | AATGATCGTTGAGTTGACAG+CGG | + | chr3.4:80854563-80854582 | None:intergenic | 40.0% |
| !! | AGGAGTCATTTCTTTTGGAG+AGG | - | chr3.4:80855304-80855323 | MS.gene84702:intron | 40.0% |
| !! | ATGCTTTTTGGGAGCTCATA+AGG | - | chr3.4:80855708-80855727 | MS.gene84702:intron | 40.0% |
| !! | CAACATGGTTTGTTGTAGTG+TGG | + | chr3.4:80852841-80852860 | None:intergenic | 40.0% |
| !! | GAGTTGGACAAAAGCATCAA+AGG | - | chr3.4:80851765-80851784 | MS.gene84702:CDS | 40.0% |
| !! | TTAAGAGCATTTCGGCTTGT+TGG | - | chr3.4:80855782-80855801 | MS.gene84702:CDS | 40.0% |
| !! | TTCTTTTGGAGAGGCTTCAA+GGG | - | chr3.4:80855313-80855332 | MS.gene84702:intron | 40.0% |
| !! | TTTCTTTTGGAGAGGCTTCA+AGG | - | chr3.4:80855312-80855331 | MS.gene84702:intron | 40.0% |
| AAATTGATCCCAACCGGGTA+AGG | + | chr3.4:80855856-80855875 | None:intergenic | 45.0% | |
| ACAATCACCTGCCCATTGTT+CGG | + | chr3.4:80855025-80855044 | None:intergenic | 45.0% | |
| ACCTGAGTATCAAGAGGGAT+GGG | - | chr3.4:80855757-80855776 | MS.gene84702:CDS | 45.0% | |
| ATGTGTCCACAACTAAACGG+CGG | + | chr3.4:80852026-80852045 | None:intergenic | 45.0% | |
| CGAGAAAATTGATCCCAACC+GGG | + | chr3.4:80855861-80855880 | None:intergenic | 45.0% | |
| CGTGAAGTACGTAGTTGGAT+TGG | + | chr3.4:80852997-80853016 | None:intergenic | 45.0% | |
| GAGCGTACATGTATCACATG+TGG | - | chr3.4:80854745-80854764 | MS.gene84702:intron | 45.0% | |
| GCTCATAAGGAGCTTCACTA+TGG | - | chr3.4:80855721-80855740 | MS.gene84702:intron | 45.0% | |
| GGACTTGGAAAAACTCATGC+TGG | - | chr3.4:80855069-80855088 | MS.gene84702:intron | 45.0% | |
| GGTAAGTGATTAGGTACTCC+AGG | + | chr3.4:80855818-80855837 | None:intergenic | 45.0% | |
| GTATGGACCTGAGTATCAAG+AGG | - | chr3.4:80855751-80855770 | MS.gene84702:intron | 45.0% | |
| TAGATGGAAGTTGTGGCATG+CGG | - | chr3.4:80852252-80852271 | MS.gene84702:CDS | 45.0% | |
| TAGTGTGCTAACCTGTGCTA+CGG | - | chr3.4:80853937-80853956 | MS.gene84702:intron | 45.0% | |
| ! | AGGTTACTATGTAGGTGTCG+TGG | + | chr3.4:80854978-80854997 | None:intergenic | 45.0% |
| ! | GCATGAGTTTTTCCAAGTCC+AGG | + | chr3.4:80855069-80855088 | None:intergenic | 45.0% |
| ! | GCTGGTTTCATGAAAGCCTT+AGG | - | chr3.4:80855087-80855106 | MS.gene84702:intron | 45.0% |
| !! | ATGATCGTTGAGTTGACAGC+GGG | + | chr3.4:80854562-80854581 | None:intergenic | 45.0% |
| !! | TCTTTTGGAGAGGCTTCAAG+GGG | - | chr3.4:80855314-80855333 | MS.gene84702:intron | 45.0% |
| !!! | TGTGGTGTTTTTAGGGTGCA+AGG | + | chr3.4:80852823-80852842 | None:intergenic | 45.0% |
| !! | AATGATAAATATTTAAAAAA+AGG | + | chr3.4:80854450-80854469 | None:intergenic | 5.0% |
| !! | ACTAATAAATATAAAAATAT+AGG | + | chr3.4:80854004-80854023 | None:intergenic | 5.0% |
| !! | ATGATAAATATTTAAAAAAA+GGG | + | chr3.4:80854449-80854468 | None:intergenic | 5.0% |
| !! | TTGATAAATATATAAAAATT+GGG | + | chr3.4:80854349-80854368 | None:intergenic | 5.0% |
| !! | TTTGATAAATATATAAAAAT+TGG | + | chr3.4:80854350-80854369 | None:intergenic | 5.0% |
| ACCCATCCCTCTTGATACTC+AGG | + | chr3.4:80855761-80855780 | None:intergenic | 50.0% | |
| AGTGTGCTAACCTGTGCTAC+GGG | - | chr3.4:80853938-80853957 | MS.gene84702:intron | 50.0% | |
| ATCTCATGGTTGGAGCTTCC+TGG | - | chr3.4:80855048-80855067 | MS.gene84702:intron | 50.0% | |
| GAAGCCGTGAAGTACGTAGT+TGG | + | chr3.4:80853002-80853021 | None:intergenic | 50.0% | |
| GACCTGAGTATCAAGAGGGA+TGG | - | chr3.4:80855756-80855775 | MS.gene84702:CDS | 50.0% | |
| TGTGTCCACAACTAAACGGC+GGG | + | chr3.4:80852025-80852044 | None:intergenic | 50.0% | |
| TTTGATGCCGAACAATGGGC+AGG | - | chr3.4:80855015-80855034 | MS.gene84702:intron | 50.0% | |
| ! | GTTTTCCCGCCGTTTAGTTG+TGG | - | chr3.4:80852017-80852036 | MS.gene84702:intron | 50.0% |
| ! | TTGACTGGTCACAGTCTAGG+TGG | - | chr3.4:80855240-80855259 | MS.gene84702:intron | 50.0% |
| !! | CTTGTTGGCTTACTAGTGCC+TGG | - | chr3.4:80855797-80855816 | MS.gene84702:CDS | 50.0% |
| CTCTCCAAATTGCGGGTACG+AGG | - | chr3.4:80854809-80854828 | MS.gene84702:intron | 55.0% | |
| GCATGCGGTGACTACTGGAA+TGG | - | chr3.4:80852267-80852286 | MS.gene84702:CDS | 55.0% | |
| GTGTGCTAACCTGTGCTACG+GGG | - | chr3.4:80853939-80853958 | MS.gene84702:intron | 55.0% | |
| TCGTCCTCGTACCCGCAATT+TGG | + | chr3.4:80854816-80854835 | None:intergenic | 55.0% | |
| TGGTTGGAGCTTCCTGGACT+TGG | - | chr3.4:80855054-80855073 | MS.gene84702:intron | 55.0% | |
| TTGTGGCATGCGGTGACTAC+TGG | - | chr3.4:80852262-80852281 | MS.gene84702:CDS | 55.0% | |
| CACATGTCACCCCGTAGCAC+AGG | + | chr3.4:80853951-80853970 | None:intergenic | 60.0% | |
| CACTTTGATTGGGGCGACCC+TGG | + | chr3.4:80853412-80853431 | None:intergenic | 60.0% | |
| CAGGGTCGCCCCAATCAAAG+TGG | - | chr3.4:80853410-80853429 | MS.gene84702:intron | 60.0% | |
| TTGATTGGGGCGACCCTGGT+TGG | + | chr3.4:80853408-80853427 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 80851750 | 80855892 | 80851750 | ID=MS.gene84702 |
| chr3.4 | mRNA | 80851750 | 80855892 | 80851750 | ID=MS.gene84702.t1;Parent=MS.gene84702 |
| chr3.4 | exon | 80855755 | 80855892 | 80855755 | ID=MS.gene84702.t1.exon1;Parent=MS.gene84702.t1 |
| chr3.4 | CDS | 80855755 | 80855892 | 80855755 | ID=cds.MS.gene84702.t1;Parent=MS.gene84702.t1 |
| chr3.4 | exon | 80855354 | 80855387 | 80855354 | ID=MS.gene84702.t1.exon2;Parent=MS.gene84702.t1 |
| chr3.4 | CDS | 80855354 | 80855387 | 80855354 | ID=cds.MS.gene84702.t1;Parent=MS.gene84702.t1 |
| chr3.4 | exon | 80852106 | 80852722 | 80852106 | ID=MS.gene84702.t1.exon3;Parent=MS.gene84702.t1 |
| chr3.4 | CDS | 80852106 | 80852722 | 80852106 | ID=cds.MS.gene84702.t1;Parent=MS.gene84702.t1 |
| chr3.4 | exon | 80851750 | 80851998 | 80851750 | ID=MS.gene84702.t1.exon4;Parent=MS.gene84702.t1 |
| chr3.4 | CDS | 80851750 | 80851998 | 80851750 | ID=cds.MS.gene84702.t1;Parent=MS.gene84702.t1 |
| Gene Sequence |
| Protein sequence |
