AlfalfaGEDB | MS.gene84740

M. sativa cultivar XinJiangDaYe / MS.gene84740

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84740.t1	XP_024629469.1	94.8	269	11	2	1	266	1	269	1.40E-138	502.3

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84740.t1	Q43385	49.4	267	83	16	16	266	66	296	3.0e-49	196.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84740.t1	A0A072TM78	94.8	269	11	2	1	266	1	269	1.0e-138	502.3

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene84740.t1	TF	C2C2-Dof

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene060528	MS.gene84740	0.802504	5.44E-49	-1.69E-46

Showing 1 to 1 of 1 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84740.t1	MTR_8g027295	96.654	269	6	2	1	266	1	269	0.0	527
MS.gene84740.t1	MTR_3g091820	45.973	298	121	12	1	266	17	306	2.82e-68	214
MS.gene84740.t1	MTR_1g077600	45.788	273	96	15	4	257	21	260	1.22e-50	167
MS.gene84740.t1	MTR_1g077600	45.788	273	96	15	4	257	21	260	1.75e-50	167
MS.gene84740.t1	MTR_2g093220	75.000	72	16	1	9	78	23	94	8.78e-34	124
MS.gene84740.t1	MTR_3g077750	52.000	125	45	4	10	130	45	158	9.77e-31	117
MS.gene84740.t1	MTR_8g479350	54.808	104	41	2	21	124	65	162	1.67e-30	116
MS.gene84740.t1	MTR_4g063780	72.059	68	19	0	11	78	62	129	3.42e-30	115
MS.gene84740.t1	MTR_8g068210	66.250	80	24	2	15	92	21	99	1.17e-29	114
MS.gene84740.t1	MTR_4g022370	43.796	137	70	2	11	140	69	205	1.59e-29	114

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84740.t1	AT3G61850	52.158	278	87	19	16	266	54	312	6.62e-67	210
MS.gene84740.t1	AT3G61850	52.158	278	87	19	16	266	66	324	9.37e-67	210
MS.gene84740.t1	AT3G61850	49.813	267	82	16	16	266	54	284	1.26e-64	204
MS.gene84740.t1	AT3G61850	49.813	267	82	16	16	266	54	284	1.26e-64	204
MS.gene84740.t1	AT3G61850	49.813	267	82	16	16	266	66	296	1.76e-64	204
MS.gene84740.t1	AT2G46590	43.408	311	105	13	15	266	59	357	1.80e-56	185
MS.gene84740.t1	AT2G46590	43.408	311	105	13	15	266	71	369	2.36e-56	185
MS.gene84740.t1	AT4G24060	39.228	311	123	15	13	266	40	341	4.98e-44	152
MS.gene84740.t1	AT4G00940	37.652	247	127	7	18	261	62	284	1.89e-40	142
MS.gene84740.t1	AT4G00940	37.652	247	127	7	18	261	62	284	1.89e-40	142

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

Find 63 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGCAAATAAATTGTCCA+AGG	0.610950	8.4:+69651038	MS.gene84740:CDS
AAGGAAATTCAACTGGATAT+TGG	0.307009	8.4:+69651725	MS.gene84740:CDS
AAGGACTAGAGAAGAAAGCA+AGG	0.601557	8.4:+69651011	MS.gene84740:CDS
AATAAACAGCTTTCTACAAG+TGG	0.552575	8.4:+69651673	MS.gene84740:CDS
AATTATTGTTATTAGCATAA+GGG	0.416837	8.4:-69651474	None:intergenic
AATTCAACTGGATATTGGAA+TGG	0.543811	8.4:+69651730	MS.gene84740:CDS
ACTAGGTTTAACTTCTTGCA+TGG	0.527857	8.4:-69651539	None:intergenic
AGAAATGTTCCTGTTGGAGG+TGG	0.521904	8.4:+69651169	MS.gene84740:CDS
AGAAGGTATTGGACTGAAGG+AGG	0.618740	8.4:+69651139	MS.gene84740:CDS
AGATGTGAAACTTGTAGGGT+TGG	0.588666	8.4:-69651271	None:intergenic

Showing 1 to 10 of 63 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGCAAATAAATTGTCCA+AGG	+	chr8.4:69651038-69651057	MS.gene84740:CDS	30.0%
AAGGAAATTCAACTGGATAT+TGG	+	chr8.4:69651725-69651744	MS.gene84740:CDS	30.0%
AATAAACAGCTTTCTACAAG+TGG	+	chr8.4:69651673-69651692	MS.gene84740:CDS	30.0%
AATTCAACTGGATATTGGAA+TGG	+	chr8.4:69651730-69651749	MS.gene84740:CDS	30.0%
ATGAAAGATGTGAAACTTGT+AGG	-	chr8.4:69651279-69651298	None:intergenic	30.0%
GAACACAATAAAGATCAACA+AGG	+	chr8.4:69651706-69651725	MS.gene84740:CDS	30.0%
TCAATTGAAAATCCAAGACT+AGG	-	chr8.4:69651559-69651578	None:intergenic	30.0%
TCTCAAAACCCTAAAATACA+AGG	+	chr8.4:69651298-69651317	MS.gene84740:CDS	30.0%
TGAAAGATGTGAAACTTGTA+GGG	-	chr8.4:69651278-69651297	None:intergenic	30.0%
TGATGAACTATTATTAGGTG+TGG	-	chr8.4:69651230-69651249	None:intergenic	30.0%

Showing 1 to 10 of 70 entries

Previous1 2 3 4 5 6 7Next

Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	69650977	69651777	69650977	ID=MS.gene84740
chr8.4	mRNA	69650977	69651777	69650977	ID=MS.gene84740.t1;Parent=MS.gene84740
chr8.4	exon	69650977	69651777	69650977	ID=MS.gene84740.t1.exon1;Parent=MS.gene84740.t1
chr8.4	CDS	69650977	69651777	69650977	ID=cds.MS.gene84740.t1;Parent=MS.gene84740.t1

Gene Sequence

>MS.gene84740

ATGGAAGGGTTAGCTCCTAATTCATGTCCAAGGCAAGGACTAGAGAAGAAAGCAAGGCCACAAGAGCAAATAAATTGTCCAAGGTGCAATTCAACAAACACAAAATTTTGCTATTACAACAACTACAGTCTCACACAACCAAGATACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGAGGATCTCTAAGAAATGTTCCTGTTGGAGGTGGTTCAAGAAAGAACAAGAAAATTCCTTCATCATTAGCCACACCTAATAATAGTTCATCAAAAATTCCTGACCTAAATCCACCAACCCTACAAGTTTCACATCTTTCATCTCAAAACCCTAAAATACAAGGAGGCCAAGATCTTAACCTAGCTTTTCCATCTATGGAAAACTATCATCATAATCATGGTATGCCATCCTCATATGTTGAGATGCATAACAATAATGAATCATCTTCTTCAGCTCTTGACCTACTTAGGTCAAGCATGGCATCTAGAGGCATAAACCCTTATGCTAATAACAATAATTCTTTGATGCCAAACTCAAATGCTATTTATCCATCTGGATTCACCATGCAAGAAGTTAAACCTAGTCTTGGATTTTCAATTGATGGAATTAATGGAAATAGATCATATGATCATGTTCAAGTTCAAGAAGGTGGTGGTGGTGGTGGAAGACTTTTGTTCCCATTTGGAGATGTTAATAATAAACAGCTTTCTACAAGTGGTGTTGAAGTGGAACACAATAAAGATCAACAAGGAAATTCAACTGGATATTGGAATGGAATGATGGGTGAAGGATCATGGTAA

Protein sequence

>MS.gene84740.t1

MEGLAPNSCPRQGLEKKARPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKIPSSLATPNNSSSKIPDLNPPTLQVSHLSSQNPKIQGGQDLNLAFPSMENYHHNHGMPSSYVEMHNNNESSSSALDLLRSSMASRGINPYANNNNSLMPNSNAIYPSGFTMQEVKPSLGFSIDGINGNRSYDHVQVQEGGGGGGRLLFPFGDVNNKQLSTSGVEVEHNKDQQGNSTGYWNGMMGEGSW