AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060528

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060528.t1 MTR_8g027295 96.283 269 7 2 1 266 1 269 0.0 524
MS.gene060528.t1 MTR_3g091820 45.638 298 122 12 1 266 17 306 3.65e-68 213
MS.gene060528.t1 MTR_1g077600 45.788 273 96 15 4 257 21 260 3.22e-50 166
MS.gene060528.t1 MTR_1g077600 45.788 273 96 15 4 257 21 260 4.27e-50 166
MS.gene060528.t1 MTR_2g093220 75.000 72 16 1 9 78 23 94 9.66e-34 124
MS.gene060528.t1 MTR_3g077750 51.538 130 38 5 10 130 45 158 2.29e-30 116
MS.gene060528.t1 MTR_8g479350 54.808 104 41 2 21 124 65 162 2.72e-30 116
MS.gene060528.t1 MTR_4g063780 72.059 68 19 0 11 78 62 129 4.12e-30 115
MS.gene060528.t1 MTR_8g068210 66.250 80 24 2 15 92 21 99 1.21e-29 114
MS.gene060528.t1 MTR_4g022370 43.796 137 70 2 11 140 69 205 1.59e-29 114
MS.gene060528.t1 MTR_4g461080 69.014 71 20 1 8 76 11 81 2.01e-29 112
MS.gene060528.t1 MTR_3g090430 76.562 64 13 1 17 78 42 105 2.46e-29 113
MS.gene060528.t1 MTR_2g096740 68.056 72 21 1 21 90 59 130 3.13e-29 112
MS.gene060528.t1 MTR_2g096740 71.014 69 18 1 24 90 77 145 3.82e-29 112
MS.gene060528.t1 MTR_1g056810 87.037 54 7 0 25 78 13 66 7.93e-29 111
MS.gene060528.t1 MTR_4g088580 58.824 85 25 1 26 100 57 141 9.41e-29 112
MS.gene060528.t1 MTR_8g079060 47.321 112 49 2 11 116 10 117 3.86e-28 107
MS.gene060528.t1 MTR_2g014060 77.966 59 12 1 17 75 19 76 7.10e-28 109
MS.gene060528.t1 MTR_5g031440 78.182 55 12 0 20 74 39 93 9.00e-28 109
MS.gene060528.t1 MTR_8g015840 72.131 61 17 0 21 81 17 77 1.79e-27 105
MS.gene060528.t1 MTR_7g059400 54.348 92 28 2 26 103 78 169 2.79e-27 108
MS.gene060528.t1 MTR_7g024670 83.019 53 9 0 26 78 79 131 5.87e-27 107
MS.gene060528.t1 MTR_2g013370 58.108 74 30 1 6 79 28 100 1.10e-26 105
MS.gene060528.t1 MTR_4g089095 74.138 58 14 1 22 79 48 104 1.98e-26 105
MS.gene060528.t1 MTR_4g089095 74.138 58 14 1 22 79 14 70 2.35e-26 103
MS.gene060528.t1 MTR_3g435480 69.492 59 18 0 19 77 131 189 6.46e-26 105
MS.gene060528.t1 MTR_4g082060 64.062 64 23 0 19 82 117 180 2.98e-25 104
MS.gene060528.t1 MTR_4g109980 77.358 53 12 0 22 74 38 90 4.33e-25 101
MS.gene060528.t1 MTR_7g010950 67.797 59 19 0 19 77 130 188 5.34e-25 103
MS.gene060528.t1 MTR_2g059540 81.633 49 9 0 24 72 31 79 6.37e-25 99.0
MS.gene060528.t1 MTR_7g086780 61.905 63 24 0 19 81 94 156 7.66e-25 102
MS.gene060528.t1 MTR_6g027450 60.317 63 25 0 19 81 84 146 8.44e-25 101
MS.gene060528.t1 MTR_2g014170 79.592 49 10 0 24 72 45 93 1.85e-24 99.8
MS.gene060528.t1 MTR_2g016030 63.636 66 22 1 12 77 37 100 2.02e-24 96.3
MS.gene060528.t1 MTR_8g044220 61.290 62 24 0 19 80 113 174 3.04e-24 101
MS.gene060528.t1 MTR_6g012450 66.102 59 20 0 19 77 131 189 4.88e-24 100
MS.gene060528.t1 MTR_6g027460 60.317 63 25 0 19 81 91 153 4.97e-24 99.8
MS.gene060528.t1 MTR_5g041420 62.712 59 22 0 19 77 133 191 2.95e-23 97.1
MS.gene060528.t1 MTR_5g041530 66.667 54 18 0 24 77 140 193 3.73e-21 92.0
MS.gene060528.t1 MTR_5g041380 56.250 64 28 0 14 77 117 180 1.32e-20 90.1
MS.gene060528.t1 MTR_5g041400 56.250 64 28 0 14 77 109 172 1.33e-20 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060528.t1 AT3G61850 52.158 278 87 19 16 266 54 312 6.55e-67 210
MS.gene060528.t1 AT3G61850 52.158 278 87 19 16 266 66 324 1.01e-66 210
MS.gene060528.t1 AT3G61850 49.813 267 82 16 16 266 54 284 1.60e-64 203
MS.gene060528.t1 AT3G61850 49.813 267 82 16 16 266 54 284 1.60e-64 203
MS.gene060528.t1 AT3G61850 49.813 267 82 16 16 266 66 296 1.65e-64 204
MS.gene060528.t1 AT2G46590 44.850 301 115 12 15 266 59 357 1.91e-57 187
MS.gene060528.t1 AT2G46590 44.850 301 115 12 15 266 71 369 2.25e-57 187
MS.gene060528.t1 AT4G24060 39.344 305 131 14 13 266 40 341 6.43e-44 152
MS.gene060528.t1 AT4G00940 37.652 247 127 7 18 261 62 284 2.98e-40 141
MS.gene060528.t1 AT4G00940 37.652 247 127 7 18 261 62 284 2.98e-40 141
MS.gene060528.t1 AT4G00940 37.652 247 127 7 18 261 62 284 2.98e-40 141
MS.gene060528.t1 AT1G64620 36.190 315 129 12 10 261 33 338 4.19e-39 139
MS.gene060528.t1 AT5G60200 68.000 75 24 0 10 84 41 115 8.53e-33 120
MS.gene060528.t1 AT3G55370 73.529 68 18 0 11 78 63 130 1.46e-31 119
MS.gene060528.t1 AT3G55370 73.529 68 18 0 11 78 108 175 1.64e-31 120
MS.gene060528.t1 AT3G55370 73.529 68 18 0 11 78 63 130 1.97e-31 119
MS.gene060528.t1 AT2G28510 55.357 112 46 2 22 130 46 156 3.08e-31 117
MS.gene060528.t1 AT3G45610 61.333 75 29 0 16 90 32 106 2.74e-30 114
MS.gene060528.t1 AT2G37590 75.410 61 15 0 18 78 83 143 9.41e-30 114
MS.gene060528.t1 AT1G51700 75.862 58 14 0 21 78 30 87 2.25e-29 110
MS.gene060528.t1 AT5G65590 64.935 77 23 1 18 94 35 107 3.44e-29 112
MS.gene060528.t1 AT5G66940 74.138 58 15 0 21 78 29 86 2.04e-28 108
MS.gene060528.t1 AT3G52440 82.456 57 10 0 26 82 27 83 2.06e-28 108
MS.gene060528.t1 AT3G52440 82.456 57 10 0 26 82 46 102 2.29e-28 109
MS.gene060528.t1 AT5G02460 67.647 68 22 0 11 78 82 149 3.00e-28 111
MS.gene060528.t1 AT3G50410 74.138 58 15 0 21 78 27 84 4.19e-28 108
MS.gene060528.t1 AT2G28810 68.182 66 20 1 11 75 63 128 1.72e-27 108
MS.gene060528.t1 AT5G60850 58.333 84 30 1 22 105 49 127 1.79e-27 108
MS.gene060528.t1 AT3G21270 81.132 53 10 0 24 76 29 81 1.97e-27 105
MS.gene060528.t1 AT4G38000 60.241 83 30 2 10 90 25 106 1.98e-27 106
MS.gene060528.t1 AT1G07640 78.182 55 12 0 24 78 21 75 2.13e-27 107
MS.gene060528.t1 AT2G28810 68.182 66 20 1 11 75 80 145 2.29e-27 108
MS.gene060528.t1 AT1G07640 78.182 55 12 0 24 78 77 131 2.51e-27 108
MS.gene060528.t1 AT1G07640 78.182 55 12 0 24 78 85 139 3.06e-27 108
MS.gene060528.t1 AT1G21340 71.212 66 16 1 16 78 27 92 3.59e-27 106
MS.gene060528.t1 AT1G28310 75.000 56 14 0 24 79 27 82 3.85e-27 107
MS.gene060528.t1 AT1G28310 75.000 56 14 0 24 79 51 106 5.50e-27 107
MS.gene060528.t1 AT1G69570 70.312 64 19 0 19 82 127 190 1.92e-26 106
MS.gene060528.t1 AT5G62940 85.714 49 7 0 26 74 75 123 5.02e-26 105
MS.gene060528.t1 AT2G34140 58.108 74 31 0 4 77 38 111 1.06e-25 99.8
MS.gene060528.t1 AT4G21050 68.852 61 19 0 19 79 19 79 1.17e-25 100
MS.gene060528.t1 AT1G29160 61.765 68 26 0 10 77 48 115 1.23e-25 99.8
MS.gene060528.t1 AT1G47655 76.923 52 12 0 22 73 27 78 3.40e-25 99.8
MS.gene060528.t1 AT5G39660 61.972 71 25 1 7 77 123 191 6.20e-25 103
MS.gene060528.t1 AT5G39660 61.972 71 25 1 7 77 123 191 6.20e-25 103
MS.gene060528.t1 AT5G39660 61.972 71 25 1 7 77 123 191 6.20e-25 103
MS.gene060528.t1 AT5G62430 51.087 92 30 2 19 104 49 131 1.84e-24 99.8
MS.gene060528.t1 AT3G47500 66.102 59 20 0 19 77 105 163 4.18e-24 100
MS.gene060528.t1 AT1G26790 66.102 59 20 0 19 77 106 164 8.40e-24 99.4
MS.gene060528.t1 AT4G21040 75.000 52 13 0 26 77 27 78 1.19e-23 96.3
MS.gene060528.t1 AT4G21080 71.154 52 15 0 26 77 27 78 1.39e-22 93.6
MS.gene060528.t1 AT4G21030 58.000 50 21 0 26 75 23 72 2.96e-13 67.0

Find 63 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGCCTTGGACATGAATT+AGG 0.219906 8.1:-75121468 None:intergenic
AAGGAAATTCAACTGGATAT+TGG 0.307009 8.1:+75122201 MS.gene060528:CDS
TCAAATGCTATTTATCCATC+TGG 0.339522 8.1:+75121987 MS.gene060528:CDS
TTCTTCTCTAATCCTTGCCT+TGG 0.373577 8.1:-75121480 None:intergenic
GGATAAATAGCATTTGAGTT+TGG 0.376465 8.1:-75121981 None:intergenic
GAATTATTGTTATTAGCATA+AGG 0.380378 8.1:-75121951 None:intergenic
CATGTCTTGCAAAAGTATCT+TGG 0.386535 8.1:-75121591 None:intergenic
GCAAGACATGTAGAAGGTAT+TGG 0.389030 8.1:+75121604 MS.gene060528:CDS
CTTGTAGGGTAGGTGGATTT+AGG 0.414726 8.1:-75121737 None:intergenic
ATGAAAGATGTGAAACTTGT+AGG 0.415991 8.1:-75121752 None:intergenic
AATTATTGTTATTAGCATAA+GGG 0.416837 8.1:-75121950 None:intergenic
CTTCAGCTCTTGACCTACTT+AGG 0.419947 8.1:+75121901 MS.gene060528:CDS
GATCAACAAGGAAATTCAAC+TGG 0.430255 8.1:+75122194 MS.gene060528:CDS
GGACAATTTATTTGCTCTTG+TGG 0.430301 8.1:-75121510 None:intergenic
TTTCTTGAACCACCTCCAAC+AGG 0.434621 8.1:-75121654 None:intergenic
CAAGAAGGTGGTGGTGGTGG+TGG 0.441828 8.1:+75122095 MS.gene060528:CDS
GAAAAGCTAGGTTAAGATCT+TGG 0.443847 8.1:-75121800 None:intergenic
CAAGAAGTTAAACCTAGTCT+TGG 0.453651 8.1:+75122020 MS.gene060528:CDS
AGGGTAGGTGGATTTAGGTC+AGG 0.459379 8.1:-75121732 None:intergenic
TATTATTAACATCTCCAAAT+GGG 0.464550 8.1:-75122130 None:intergenic
TTATTATTAACATCTCCAAA+TGG 0.464816 8.1:-75122131 None:intergenic
CTAAGAAATGTTCCTGTTGG+AGG 0.487652 8.1:+75121642 MS.gene060528:CDS
GTTATGCATCTCAACATATG+AGG 0.495564 8.1:-75121862 None:intergenic
GTTCAAGAAGGTGGTGGTGG+TGG 0.497320 8.1:+75122092 MS.gene060528:CDS
GAAAACTATCATCATAATCA+TGG 0.499028 8.1:+75121831 MS.gene060528:CDS
TGGATATTGGAATGGAATGA+TGG 0.500493 8.1:+75122214 MS.gene060528:CDS
TCTCTAAGAAATGTTCCTGT+TGG 0.507663 8.1:+75121639 MS.gene060528:CDS
TGAAAGATGTGAAACTTGTA+GGG 0.508742 8.1:-75121751 None:intergenic
TTCTACAAGTGGTGTTGAAG+TGG 0.514078 8.1:+75122160 MS.gene060528:CDS
AGAAATGTTCCTGTTGGAGG+TGG 0.521904 8.1:+75121645 MS.gene060528:CDS
ACTAGGTTTAACTTCTTGCA+TGG 0.527857 8.1:-75122015 None:intergenic
TGTAGAAGGTATTGGACTGA+AGG 0.537478 8.1:+75121612 MS.gene060528:CDS
AATTCAACTGGATATTGGAA+TGG 0.543811 8.1:+75122206 MS.gene060528:CDS
TGATGGACTATTATTAGGTG+TGG 0.547961 8.1:-75121703 None:intergenic
TGTGAAACTTGTAGGGTAGG+TGG 0.547961 8.1:-75121744 None:intergenic
TTAGGTGTGGCTAATGATGA+AGG 0.550310 8.1:-75121690 None:intergenic
AATAAACAGCTTTCTACAAG+TGG 0.552575 8.1:+75122149 MS.gene060528:CDS
GAATGATGGGTGAAGGATCA+TGG 0.555879 8.1:+75122228 MS.gene060528:CDS
TAGGTATATATACTCATGGA+AGG 0.557450 8.1:+75121438 None:intergenic
TTTCCATAGATGGAAAAGCT+AGG 0.562893 8.1:-75121812 None:intergenic
ATGCCATGCTTGACCTAAGT+AGG 0.567095 8.1:-75121914 None:intergenic
TCAATTGAAAATCCAAGACT+AGG 0.576773 8.1:-75122032 None:intergenic
TCTTGCATGGTGAATCCAGA+TGG 0.582527 8.1:-75122002 None:intergenic
CAAGTTCAAGAAGGTGGTGG+TGG 0.585887 8.1:+75122089 MS.gene060528:CDS
AGATGTGAAACTTGTAGGGT+AGG 0.596355 8.1:-75121747 None:intergenic
TGCATCTCAACATATGAGGA+TGG 0.597529 8.1:-75121858 None:intergenic
TCTCAAAACCCTAAAATACA+AGG 0.599552 8.1:+75121774 MS.gene060528:CDS
TGGAATGGAATGATGGGTGA+AGG 0.602503 8.1:+75122221 MS.gene060528:CDS
GGATATTGGAATGGAATGAT+GGG 0.607936 8.1:+75122215 MS.gene060528:CDS
AAGAGCAAATAAATTGTCCA+AGG 0.610950 8.1:+75121514 MS.gene060528:CDS
GATCATGTTCAAGTTCAAGA+AGG 0.611680 8.1:+75122080 MS.gene060528:CDS
TAGCTCCTAATTCATGTCCA+AGG 0.613211 8.1:+75121463 MS.gene060528:CDS
CCTAATTCATGTCCAAGGCA+AGG 0.615681 8.1:+75121468 MS.gene060528:CDS
AGAAGGTATTGGACTGAAGG+AGG 0.618740 8.1:+75121615 MS.gene060528:CDS
GTTCAAGTTCAAGAAGGTGG+TGG 0.620240 8.1:+75122086 MS.gene060528:CDS
AAGGATTAGAGAAGAAAGCA+AGG 0.621824 8.1:+75121487 MS.gene060528:CDS
AGGTCAAGCATGGCATCTAG+AGG 0.626491 8.1:+75121921 MS.gene060528:CDS
CATGTTCAAGTTCAAGAAGG+TGG 0.629706 8.1:+75122083 MS.gene060528:CDS
GTGTTTGTTGAATTGCACCT+TGG 0.631036 8.1:-75121531 None:intergenic
TGACCTACTTAGGTCAAGCA+TGG 0.637135 8.1:+75121911 MS.gene060528:CDS
AGGTATATATACTCATGGAA+GGG 0.656170 8.1:+75121439 None:intergenic
CAAAACCCTAAAATACAAGG+AGG 0.720797 8.1:+75121777 MS.gene060528:CDS
GAACACAATAAAGATCAACA+AGG 0.746748 8.1:+75122182 MS.gene060528:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTGTTATTAGCATAA+GGG - chr8.1:75121953-75121972 None:intergenic 15.0%
!! TATTATTAACATCTCCAAAT+GGG - chr8.1:75122133-75122152 None:intergenic 20.0%
!! TTATTATTAACATCTCCAAA+TGG - chr8.1:75122134-75122153 None:intergenic 20.0%
!!! ATTTTTGATGGACTATTATT+AGG - chr8.1:75121711-75121730 None:intergenic 20.0%
!!! GAATTATTGTTATTAGCATA+AGG - chr8.1:75121954-75121973 None:intergenic 20.0%
!!! TTTTCAATTGATGGAATTAA+TGG + chr8.1:75122044-75122063 MS.gene060528:CDS 20.0%
! GAAAACTATCATCATAATCA+TGG + chr8.1:75121831-75121850 MS.gene060528:CDS 25.0%
AAGAGCAAATAAATTGTCCA+AGG + chr8.1:75121514-75121533 MS.gene060528:CDS 30.0%
AAGGAAATTCAACTGGATAT+TGG + chr8.1:75122201-75122220 MS.gene060528:CDS 30.0%
AATAAACAGCTTTCTACAAG+TGG + chr8.1:75122149-75122168 MS.gene060528:CDS 30.0%
AATTCAACTGGATATTGGAA+TGG + chr8.1:75122206-75122225 MS.gene060528:CDS 30.0%
ATGAAAGATGTGAAACTTGT+AGG - chr8.1:75121755-75121774 None:intergenic 30.0%
GAACACAATAAAGATCAACA+AGG + chr8.1:75122182-75122201 MS.gene060528:CDS 30.0%
TCAATTGAAAATCCAAGACT+AGG - chr8.1:75122035-75122054 None:intergenic 30.0%
TCTCAAAACCCTAAAATACA+AGG + chr8.1:75121774-75121793 MS.gene060528:CDS 30.0%
TGAAAGATGTGAAACTTGTA+GGG - chr8.1:75121754-75121773 None:intergenic 30.0%
! AGTCTTGGATTTTCAATTGA+TGG + chr8.1:75122035-75122054 MS.gene060528:CDS 30.0%
! GGATAAATAGCATTTGAGTT+TGG - chr8.1:75121984-75122003 None:intergenic 30.0%
! TCAAATGCTATTTATCCATC+TGG + chr8.1:75121987-75122006 MS.gene060528:CDS 30.0%
! TGATGATAGTTTTCCATAGA+TGG - chr8.1:75121825-75121844 None:intergenic 30.0%
! TTTAGGTCAGGAATTTTTGA+TGG - chr8.1:75121723-75121742 None:intergenic 30.0%
AAGGATTAGAGAAGAAAGCA+AGG + chr8.1:75121487-75121506 MS.gene060528:CDS 35.0%
CAAAACCCTAAAATACAAGG+AGG + chr8.1:75121777-75121796 MS.gene060528:CDS 35.0%
CAAGAAGTTAAACCTAGTCT+TGG + chr8.1:75122020-75122039 MS.gene060528:CDS 35.0%
GAAAAGCTAGGTTAAGATCT+TGG - chr8.1:75121803-75121822 None:intergenic 35.0%
GATCAACAAGGAAATTCAAC+TGG + chr8.1:75122194-75122213 MS.gene060528:CDS 35.0%
GGACAATTTATTTGCTCTTG+TGG - chr8.1:75121513-75121532 None:intergenic 35.0%
GGATATTGGAATGGAATGAT+GGG + chr8.1:75122215-75122234 MS.gene060528:CDS 35.0%
GTTATGCATCTCAACATATG+AGG - chr8.1:75121865-75121884 None:intergenic 35.0%
TGGATATTGGAATGGAATGA+TGG + chr8.1:75122214-75122233 MS.gene060528:CDS 35.0%
TTTCCATAGATGGAAAAGCT+AGG - chr8.1:75121815-75121834 None:intergenic 35.0%
! ACTAGGTTTAACTTCTTGCA+TGG - chr8.1:75122018-75122037 None:intergenic 35.0%
! ACTTTTGCAAGACATGTAGA+AGG + chr8.1:75121598-75121617 MS.gene060528:CDS 35.0%
! GATCATGTTCAAGTTCAAGA+AGG + chr8.1:75122080-75122099 MS.gene060528:CDS 35.0%
! TCTCTAAGAAATGTTCCTGT+TGG + chr8.1:75121639-75121658 MS.gene060528:CDS 35.0%
!! CATGTCTTGCAAAAGTATCT+TGG - chr8.1:75121594-75121613 None:intergenic 35.0%
!! TAACCTAGCTTTTCCATCTA+TGG + chr8.1:75121809-75121828 MS.gene060528:CDS 35.0%
!! TGATGGACTATTATTAGGTG+TGG - chr8.1:75121706-75121725 None:intergenic 35.0%
AGATGTGAAACTTGTAGGGT+AGG - chr8.1:75121750-75121769 None:intergenic 40.0%
CTAAGAAATGTTCCTGTTGG+AGG + chr8.1:75121642-75121661 MS.gene060528:CDS 40.0%
TAGCTCCTAATTCATGTCCA+AGG + chr8.1:75121463-75121482 MS.gene060528:CDS 40.0%
TGCATCTCAACATATGAGGA+TGG - chr8.1:75121861-75121880 None:intergenic 40.0%
TTAGGTGTGGCTAATGATGA+AGG - chr8.1:75121693-75121712 None:intergenic 40.0%
TTCTTCTCTAATCCTTGCCT+TGG - chr8.1:75121483-75121502 None:intergenic 40.0%
! CATGTTCAAGTTCAAGAAGG+TGG + chr8.1:75122083-75122102 MS.gene060528:CDS 40.0%
! CTTGGCCTCCTTGTATTTTA+GGG - chr8.1:75121785-75121804 None:intergenic 40.0%
! GCAAGACATGTAGAAGGTAT+TGG + chr8.1:75121604-75121623 MS.gene060528:CDS 40.0%
! GGAAGACTTTTGTTCCCATT+TGG + chr8.1:75122116-75122135 MS.gene060528:CDS 40.0%
! GTGTTTGTTGAATTGCACCT+TGG - chr8.1:75121534-75121553 None:intergenic 40.0%
! TCTTGGCCTCCTTGTATTTT+AGG - chr8.1:75121786-75121805 None:intergenic 40.0%
! TTCTACAAGTGGTGTTGAAG+TGG + chr8.1:75122160-75122179 MS.gene060528:CDS 40.0%
!! TGTAGAAGGTATTGGACTGA+AGG + chr8.1:75121612-75121631 MS.gene060528:CDS 40.0%
AGAAATGTTCCTGTTGGAGG+TGG + chr8.1:75121645-75121664 MS.gene060528:CDS 45.0%
ATGCCATGCTTGACCTAAGT+AGG - chr8.1:75121917-75121936 None:intergenic 45.0%
CCTAATTCATGTCCAAGGCA+AGG + chr8.1:75121468-75121487 MS.gene060528:CDS 45.0%
CCTTGCCTTGGACATGAATT+AGG - chr8.1:75121471-75121490 None:intergenic 45.0%
CTTCAGCTCTTGACCTACTT+AGG + chr8.1:75121901-75121920 MS.gene060528:CDS 45.0%
TCTTGCATGGTGAATCCAGA+TGG - chr8.1:75122005-75122024 None:intergenic 45.0%
TGACCTACTTAGGTCAAGCA+TGG + chr8.1:75121911-75121930 MS.gene060528:CDS 45.0%
TGTGAAACTTGTAGGGTAGG+TGG - chr8.1:75121747-75121766 None:intergenic 45.0%
TTTCTTGAACCACCTCCAAC+AGG - chr8.1:75121657-75121676 None:intergenic 45.0%
! CTTGTAGGGTAGGTGGATTT+AGG - chr8.1:75121740-75121759 None:intergenic 45.0%
! GTTCAAGTTCAAGAAGGTGG+TGG + chr8.1:75122086-75122105 MS.gene060528:CDS 45.0%
!! AGAAGGTATTGGACTGAAGG+AGG + chr8.1:75121615-75121634 MS.gene060528:CDS 45.0%
!! GAATGATGGGTGAAGGATCA+TGG + chr8.1:75122228-75122247 MS.gene060528:CDS 45.0%
!! TGGAATGGAATGATGGGTGA+AGG + chr8.1:75122221-75122240 MS.gene060528:CDS 45.0%
AGGTCAAGCATGGCATCTAG+AGG + chr8.1:75121921-75121940 MS.gene060528:CDS 50.0%
! AGGGTAGGTGGATTTAGGTC+AGG - chr8.1:75121735-75121754 None:intergenic 50.0%
! CAAGTTCAAGAAGGTGGTGG+TGG + chr8.1:75122089-75122108 MS.gene060528:CDS 50.0%
!! GTTCAAGAAGGTGGTGGTGG+TGG + chr8.1:75122092-75122111 MS.gene060528:CDS 55.0%
!! CAAGAAGGTGGTGGTGGTGG+TGG + chr8.1:75122095-75122114 MS.gene060528:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 75121453 75122253 75121453 ID=MS.gene060528
chr8.1 mRNA 75121453 75122253 75121453 ID=MS.gene060528.t1;Parent=MS.gene060528
chr8.1 exon 75121453 75122253 75121453 ID=MS.gene060528.t1.exon1;Parent=MS.gene060528.t1
chr8.1 CDS 75121453 75122253 75121453 ID=cds.MS.gene060528.t1;Parent=MS.gene060528.t1
Gene Sequence

>MS.gene060528

ATGGAAGGGTTAGCTCCTAATTCATGTCCAAGGCAAGGATTAGAGAAGAAAGCAAGGCCACAAGAGCAAATAAATTGTCCAAGGTGCAATTCAACAAACACAAAATTTTGTTATTACAACAACTACAGTCTCACACAACCAAGATACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGAGGATCTCTAAGAAATGTTCCTGTTGGAGGTGGTTCAAGAAAGAACAAGAAAATTCCTTCATCATTAGCCACACCTAATAATAGTCCATCAAAAATTCCTGACCTAAATCCACCTACCCTACAAGTTTCACATCTTTCATCTCAAAACCCTAAAATACAAGGAGGCCAAGATCTTAACCTAGCTTTTCCATCTATGGAAAACTATCATCATAATCATGGTATGCCATCCTCATATGTTGAGATGCATAACAATAATGAATCATCTTCTTCAGCTCTTGACCTACTTAGGTCAAGCATGGCATCTAGAGGCATAAACCCTTATGCTAATAACAATAATTCTTTGATGCCAAACTCAAATGCTATTTATCCATCTGGATTCACCATGCAAGAAGTTAAACCTAGTCTTGGATTTTCAATTGATGGAATTAATGGAAATAGATCATATGATCATGTTCAAGTTCAAGAAGGTGGTGGTGGTGGTGGAAGACTTTTGTTCCCATTTGGAGATGTTAATAATAAACAGCTTTCTACAAGTGGTGTTGAAGTGGAACACAATAAAGATCAACAAGGAAATTCAACTGGATATTGGAATGGAATGATGGGTGAAGGATCATGGTAA
Protein sequence

>MS.gene060528.t1

MEGLAPNSCPRQGLEKKARPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKIPSSLATPNNSPSKIPDLNPPTLQVSHLSSQNPKIQGGQDLNLAFPSMENYHHNHGMPSSYVEMHNNNESSSSALDLLRSSMASRGINPYANNNNSLMPNSNAIYPSGFTMQEVKPSLGFSIDGINGNRSYDHVQVQEGGGGGGRLLFPFGDVNNKQLSTSGVEVEHNKDQQGNSTGYWNGMMGEGSW