Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84760.t1 | XP_003627594.1 | 97.6 | 288 | 6 | 1 | 1 | 288 | 1 | 287 | 1.60E-143 | 518.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84760.t1 | Q9M2E2 | 53.4 | 296 | 130 | 3 | 1 | 288 | 1 | 296 | 4.7e-80 | 299.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84760.t1 | G7LBT2 | 97.6 | 288 | 6 | 1 | 1 | 288 | 1 | 287 | 1.1e-143 | 518.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056711 | MS.gene84760 | 0.925972 | 8.88E-91 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84760.t1 | MTR_8g031910 | 97.917 | 288 | 5 | 1 | 1 | 288 | 1 | 287 | 0.0 | 577 |
| MS.gene84760.t1 | MTR_7g076660 | 68.403 | 288 | 89 | 2 | 1 | 288 | 1 | 286 | 2.69e-142 | 402 |
| MS.gene84760.t1 | MTR_7g076660 | 68.198 | 283 | 88 | 2 | 6 | 288 | 7 | 287 | 4.84e-140 | 396 |
| MS.gene84760.t1 | MTR_7g076655 | 66.667 | 288 | 94 | 2 | 1 | 288 | 1 | 286 | 3.43e-139 | 394 |
| MS.gene84760.t1 | MTR_7g076660 | 67.300 | 263 | 84 | 2 | 26 | 288 | 2 | 262 | 7.03e-128 | 364 |
| MS.gene84760.t1 | MTR_8g031990 | 58.333 | 300 | 111 | 4 | 1 | 288 | 1 | 298 | 2.15e-121 | 349 |
| MS.gene84760.t1 | MTR_8g032010 | 57.333 | 300 | 114 | 4 | 1 | 288 | 1 | 298 | 4.80e-119 | 343 |
| MS.gene84760.t1 | MTR_8g032000 | 56.333 | 300 | 117 | 4 | 1 | 288 | 1 | 298 | 4.07e-116 | 336 |
| MS.gene84760.t1 | MTR_8g031960 | 60.137 | 291 | 102 | 5 | 7 | 285 | 8 | 296 | 1.50e-115 | 335 |
| MS.gene84760.t1 | MTR_7g076665 | 57.095 | 296 | 118 | 4 | 1 | 288 | 1 | 295 | 3.48e-115 | 333 |
| MS.gene84760.t1 | MTR_8g031980 | 57.000 | 300 | 115 | 4 | 1 | 288 | 1 | 298 | 9.77e-115 | 332 |
| MS.gene84760.t1 | MTR_8g032020 | 55.405 | 296 | 117 | 4 | 6 | 288 | 7 | 300 | 1.31e-110 | 322 |
| MS.gene84760.t1 | MTR_8g031630 | 56.333 | 300 | 116 | 6 | 1 | 288 | 1 | 297 | 1.59e-109 | 319 |
| MS.gene84760.t1 | MTR_8g031940 | 54.785 | 303 | 118 | 5 | 1 | 288 | 1 | 299 | 2.84e-109 | 318 |
| MS.gene84760.t1 | MTR_8g031900 | 54.576 | 295 | 125 | 5 | 1 | 288 | 1 | 293 | 9.71e-109 | 317 |
| MS.gene84760.t1 | MTR_8g031610 | 56.507 | 292 | 113 | 6 | 8 | 288 | 6 | 294 | 2.57e-106 | 311 |
| MS.gene84760.t1 | MTR_8g031600 | 54.333 | 300 | 123 | 4 | 1 | 288 | 1 | 298 | 5.72e-105 | 308 |
| MS.gene84760.t1 | MTR_8g031650 | 56.357 | 291 | 112 | 6 | 10 | 288 | 104 | 391 | 6.63e-104 | 308 |
| MS.gene84760.t1 | MTR_8g031650 | 58.586 | 99 | 39 | 2 | 159 | 255 | 2 | 100 | 1.09e-32 | 124 |
| MS.gene84760.t1 | MTR_8g031650 | 56.357 | 291 | 112 | 6 | 10 | 288 | 270 | 557 | 2.33e-102 | 310 |
| MS.gene84760.t1 | MTR_8g031650 | 56.929 | 267 | 102 | 5 | 1 | 255 | 1 | 266 | 4.49e-95 | 291 |
| MS.gene84760.t1 | MTR_5g062280 | 50.336 | 298 | 135 | 5 | 1 | 288 | 1 | 295 | 2.35e-98 | 291 |
| MS.gene84760.t1 | MTR_8g031850 | 47.458 | 295 | 108 | 7 | 1 | 288 | 1 | 255 | 6.65e-84 | 253 |
| MS.gene84760.t1 | MTR_3g079320 | 49.658 | 292 | 126 | 6 | 6 | 279 | 10 | 298 | 1.92e-82 | 251 |
| MS.gene84760.t1 | MTR_7g106800 | 47.518 | 282 | 100 | 4 | 7 | 284 | 9 | 246 | 1.02e-79 | 242 |
| MS.gene84760.t1 | MTR_5g083430 | 58.382 | 173 | 71 | 1 | 116 | 288 | 13 | 184 | 1.13e-67 | 209 |
| MS.gene84760.t1 | MTR_3g098470 | 42.268 | 291 | 141 | 7 | 4 | 283 | 32 | 306 | 4.20e-62 | 199 |
| MS.gene84760.t1 | MTR_1g031180 | 43.003 | 293 | 136 | 9 | 4 | 283 | 37 | 311 | 9.44e-58 | 187 |
| MS.gene84760.t1 | MTR_8g032030 | 58.235 | 170 | 57 | 3 | 6 | 162 | 6 | 174 | 3.47e-57 | 184 |
| MS.gene84760.t1 | MTR_4g087460 | 38.127 | 299 | 158 | 7 | 4 | 288 | 19 | 304 | 7.08e-55 | 180 |
| MS.gene84760.t1 | MTR_8g096060 | 39.384 | 292 | 145 | 9 | 4 | 283 | 34 | 305 | 7.66e-51 | 170 |
| MS.gene84760.t1 | MTR_4g105310 | 27.381 | 252 | 128 | 10 | 9 | 249 | 51 | 258 | 9.37e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84760.t1 | AT3G61220 | 56.419 | 296 | 121 | 3 | 1 | 288 | 1 | 296 | 4.20e-116 | 336 |
| MS.gene84760.t1 | AT3G61220 | 56.897 | 290 | 117 | 3 | 7 | 288 | 14 | 303 | 6.29e-115 | 333 |
| MS.gene84760.t1 | AT3G61220 | 56.897 | 290 | 117 | 3 | 7 | 288 | 38 | 327 | 1.90e-114 | 333 |
| MS.gene84760.t1 | AT2G24190 | 53.356 | 298 | 127 | 4 | 1 | 288 | 1 | 296 | 7.42e-110 | 320 |
| MS.gene84760.t1 | AT2G24190 | 53.767 | 292 | 123 | 4 | 7 | 288 | 12 | 301 | 5.38e-109 | 318 |
| MS.gene84760.t1 | AT1G01800 | 55.068 | 296 | 122 | 4 | 3 | 288 | 1 | 295 | 1.54e-107 | 314 |
| MS.gene84760.t1 | AT1G01800 | 54.106 | 207 | 85 | 3 | 91 | 288 | 55 | 260 | 3.66e-69 | 215 |
| MS.gene84760.t1 | AT5G51030 | 40.203 | 296 | 147 | 10 | 4 | 286 | 35 | 313 | 1.41e-59 | 192 |
| MS.gene84760.t1 | AT3G59710 | 42.403 | 283 | 139 | 9 | 4 | 280 | 16 | 280 | 2.90e-59 | 191 |
| MS.gene84760.t1 | AT3G59710 | 42.403 | 283 | 139 | 9 | 4 | 280 | 26 | 290 | 3.90e-59 | 191 |
| MS.gene84760.t1 | AT5G61830 | 41.176 | 289 | 146 | 5 | 6 | 283 | 36 | 311 | 2.41e-58 | 189 |
| MS.gene84760.t1 | AT5G61830 | 41.176 | 289 | 146 | 5 | 6 | 283 | 36 | 311 | 2.41e-58 | 189 |
| MS.gene84760.t1 | AT3G59710 | 42.403 | 283 | 139 | 9 | 4 | 280 | 45 | 309 | 2.83e-58 | 189 |
| MS.gene84760.t1 | AT5G50600 | 31.169 | 154 | 94 | 3 | 7 | 160 | 48 | 189 | 1.68e-13 | 70.1 |
| MS.gene84760.t1 | AT5G50700 | 31.169 | 154 | 94 | 3 | 7 | 160 | 48 | 189 | 1.68e-13 | 70.1 |
| MS.gene84760.t1 | AT4G24050 | 29.730 | 259 | 117 | 12 | 9 | 250 | 37 | 247 | 6.49e-13 | 67.8 |
| MS.gene84760.t1 | AT4G24050 | 29.730 | 259 | 117 | 12 | 9 | 250 | 37 | 247 | 8.79e-13 | 68.2 |
| MS.gene84760.t1 | AT5G50130 | 25.517 | 290 | 169 | 10 | 6 | 281 | 3 | 259 | 2.60e-12 | 66.2 |
| MS.gene84760.t1 | AT5G50130 | 26.141 | 241 | 145 | 8 | 9 | 249 | 39 | 246 | 5.59e-11 | 62.0 |
Find 0 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTTTTAGTTATCT+TGG | + | 56129:234797-234816 | MS.gene84760:intron | 10.0% |
| !! | TACTAACATAAACAAATATA+AGG | - | 56129:236165-236184 | MS.gene84760:intergenic | 15.0% |
| !! | TGAATTTATCAAATTATTAG+CGG | - | 56129:236004-236023 | MS.gene84760:intergenic | 15.0% |
| !!! | AAAAACGAAAAATATTGATT+CGG | + | 56129:235750-235769 | MS.gene84760:intron | 15.0% |
| !!! | ATGTTTTTCATTAGTTAATT+TGG | - | 56129:236230-236249 | MS.gene84760:intergenic | 15.0% |
| !!! | TATTTTGTATATGAATATTC+AGG | + | 56129:235450-235469 | MS.gene84760:intron | 15.0% |
| !!! | TGTAGTTTAAAATACTTATA+TGG | - | 56129:235152-235171 | MS.gene84760:intergenic | 15.0% |
| !! | AAAAAATGATGAACTCTATA+TGG | - | 56129:235915-235934 | MS.gene84760:intergenic | 20.0% |
| !! | AAAAAGCTGAAAATAACTTA+TGG | + | 56129:235014-235033 | MS.gene84760:intron | 20.0% |
| !! | AAATGATTCTGAATTATCAT+TGG | + | 56129:234710-234729 | MS.gene84760:intron | 20.0% |
| !! | AGAAAATTGGATTTACATTA+AGG | - | 56129:234614-234633 | MS.gene84760:intergenic | 20.0% |
| !! | ATAATAACAAATTACTATGG+TGG | + | 56129:235532-235551 | MS.gene84760:CDS | 20.0% |
| !! | CTCAAAAAATTATCGTATAA+AGG | + | 56129:235827-235846 | MS.gene84760:intron | 20.0% |
| !! | CTTTGATAAAGGAAATTAAA+TGG | - | 56129:234299-234318 | MS.gene84760:intergenic | 20.0% |
| !! | TCAGTATATATCAAATGAAT+GGG | + | 56129:236438-236457 | MS.gene84760:intron | 20.0% |
| !! | TGCATAATAACAAATTACTA+TGG | + | 56129:235529-235548 | MS.gene84760:CDS | 20.0% |
| !! | TTCAGTATATATCAAATGAA+TGG | + | 56129:236437-236456 | MS.gene84760:intron | 20.0% |
| !! | TTTAAACTACAAGAATTAAG+TGG | + | 56129:235161-235180 | MS.gene84760:intron | 20.0% |
| !!! | AATTTTTACCACTTTGATAA+AGG | - | 56129:234310-234329 | MS.gene84760:intergenic | 20.0% |
| !!! | ATGGATCTTTTAACATTTAT+TGG | - | 56129:234280-234299 | MS.gene84760:intergenic | 20.0% |
| !!! | TTAATGTAAATCCAATTTTC+TGG | + | 56129:234613-234632 | MS.gene84760:intron | 20.0% |
| !!! | TTTAATTTCCTTTATCAAAG+TGG | + | 56129:234299-234318 | MS.gene84760:intron | 20.0% |
| ! | AAGTGAGTAAATGGTAATTT+CGG | - | 56129:236359-236378 | MS.gene84760:intergenic | 25.0% |
| ! | ACGCAATTAATACATAAGTT+TGG | - | 56129:236649-236668 | MS.gene84760:intergenic | 25.0% |
| ! | ACTGTTTGAAAGAACTTATA+GGG | - | 56129:235056-235075 | MS.gene84760:intergenic | 25.0% |
| ! | ATCATAATGATCCAGAAAAT+TGG | - | 56129:234627-234646 | MS.gene84760:intergenic | 25.0% |
| ! | ATTGGAAACTGTTAAAAGAT+TGG | + | 56129:234383-234402 | MS.gene84760:CDS | 25.0% |
| ! | GGTATATTATCTGTTGAAAA+TGG | + | 56129:236709-236728 | MS.gene84760:CDS | 25.0% |
| ! | GTAAATAATGCAGGAATTAA+TGG | + | 56129:235328-235347 | MS.gene84760:CDS | 25.0% |
| ! | TTCTTGATTCTTAGTTATCT+TGG | + | 56129:234770-234789 | MS.gene84760:intron | 25.0% |
| ! | TTGGTCCAAATAAACATAAA+AGG | - | 56129:234261-234280 | MS.gene84760:intergenic | 25.0% |
| ! | TTTAATCCTGTGTTCAAAAA+TGG | - | 56129:234929-234948 | MS.gene84760:intergenic | 25.0% |
| ! | TTTGTATATGAATATTCAGG+TGG | + | 56129:235453-235472 | MS.gene84760:intron | 25.0% |
| !! | AAAGCACTTAATAACTAAGT+TGG | - | 56129:234868-234887 | MS.gene84760:intergenic | 25.0% |
| !! | AAGTCTTTGAATTTTTCTGA+AGG | - | 56129:235717-235736 | MS.gene84760:intergenic | 25.0% |
| !! | AGGTACCTTTTATGTTTATT+TGG | + | 56129:234253-234272 | MS.gene84760:intron | 25.0% |
| !! | ATCAAATAAAGGTATAGGAT+TGG | + | 56129:234365-234384 | MS.gene84760:CDS | 25.0% |
| !! | TTGTTTTCTTTAAACTGTCT+GGG | + | 56129:235380-235399 | MS.gene84760:intron | 25.0% |
| !!! | ATATCTGTTTTAACAAAACC+CGG | - | 56129:236676-236695 | MS.gene84760:intergenic | 25.0% |
| AATAAAGAGAACGAAAATCC+AGG | - | 56129:235261-235280 | MS.gene84760:intergenic | 30.0% | |
| AATAGCATCTGAATAAGCTT+TGG | + | 56129:235425-235444 | MS.gene84760:intron | 30.0% | |
| ACAAACAAGAAACACATTCA+AGG | + | 56129:236272-236291 | MS.gene84760:intron | 30.0% | |
| ACAGATATGAATAGAAACAC+AGG | + | 56129:236688-236707 | MS.gene84760:CDS | 30.0% | |
| ACAGTTTATTTACGTTGTTC+AGG | - | 56129:236400-236419 | MS.gene84760:intergenic | 30.0% | |
| ACCAATGAAGCAATACTAAA+AGG | - | 56129:234537-234556 | MS.gene84760:intergenic | 30.0% | |
| ACTGATGTAAAGTGAGTAAA+TGG | - | 56129:236368-236387 | MS.gene84760:intergenic | 30.0% | |
| AGGTGGAACCAATTATTAAT+TGG | + | 56129:235470-235489 | MS.gene84760:intron | 30.0% | |
| AGTTCCCTCCAATTAATAAT+TGG | - | 56129:235481-235500 | MS.gene84760:intergenic | 30.0% | |
| ATGTATTAATTGCGTTTGTC+CGG | + | 56129:236654-236673 | MS.gene84760:CDS | 30.0% | |
| CTATCAGAGATTATTTAGAC+TGG | - | 56129:235795-235814 | MS.gene84760:intergenic | 30.0% | |
| GAAAATCCAGGCTATTATTA+TGG | - | 56129:235249-235268 | MS.gene84760:intergenic | 30.0% | |
| GACTGTTTGAAAGAACTTAT+AGG | - | 56129:235057-235076 | MS.gene84760:intergenic | 30.0% | |
| GCACAAACACTTCAAATTAA+AGG | + | 56129:235190-235209 | MS.gene84760:intron | 30.0% | |
| GGAACCAATTATTAATTGGA+GGG | + | 56129:235474-235493 | MS.gene84760:CDS | 30.0% | |
| GTTGTTACAGGATCAAATAA+AGG | + | 56129:234354-234373 | MS.gene84760:CDS | 30.0% | |
| TATCAAATTATTAGCGGTGT+CGG | - | 56129:235998-236017 | MS.gene84760:intergenic | 30.0% | |
| TATTTACCTGCACACAAATT+TGG | - | 56129:235315-235334 | MS.gene84760:intergenic | 30.0% | |
| TCATAGGTGAAAACACATTT+CGG | - | 56129:235944-235963 | MS.gene84760:intergenic | 30.0% | |
| TGGAACCAATTATTAATTGG+AGG | + | 56129:235473-235492 | MS.gene84760:CDS | 30.0% | |
| TTATAGGCACAAAGATATGT+TGG | - | 56129:236574-236593 | MS.gene84760:intergenic | 30.0% | |
| TTGATGTGTCTTTCATTTGT+CGG | - | 56129:236203-236222 | MS.gene84760:intergenic | 30.0% | |
| ! | ACAGGATCAAATAAAGGTAT+AGG | + | 56129:234360-234379 | MS.gene84760:CDS | 30.0% |
| ! | AGTAATTATAAGTGTCGTGT+TGG | + | 56129:236034-236053 | MS.gene84760:intron | 30.0% |
| ! | ATATATCAAATGAATGGGCT+AGG | + | 56129:236443-236462 | MS.gene84760:CDS | 30.0% |
| ! | TCCTTTTAGTATTGCTTCAT+TGG | + | 56129:234533-234552 | MS.gene84760:CDS | 30.0% |
| ! | TTTCTGAAAGACTTCAAACA+AGG | + | 56129:236526-236545 | MS.gene84760:CDS | 30.0% |
| !! | CTTGTTTTCTTTAAACTGTC+TGG | + | 56129:235379-235398 | MS.gene84760:intron | 30.0% |
| !! | GTTAAAAGATTGGCTTCAAA+TGG | + | 56129:234393-234412 | MS.gene84760:CDS | 30.0% |
| !!! | ATTTTTCTGAAGGACTAGTT+TGG | - | 56129:235707-235726 | MS.gene84760:intergenic | 30.0% |
| !!! | TTTTTCTGAAGGACTAGTTT+GGG | - | 56129:235706-235725 | MS.gene84760:intergenic | 30.0% |
| AACACTTCAAATTAAAGGCG+CGG | + | 56129:235195-235214 | MS.gene84760:intron | 35.0% | |
| AAGCAATTCCAAATAGCTTC+TGG | + | 56129:234991-235010 | MS.gene84760:intron | 35.0% | |
| ACAAGGTTCACTTGAAAACA+AGG | + | 56129:236543-236562 | MS.gene84760:CDS | 35.0% | |
| ACAGCTAGAAATCAGAAAAG+AGG | + | 56129:234432-234451 | MS.gene84760:CDS | 35.0% | |
| ACTGAGTCAAACTTATGAGA+TGG | + | 56129:235498-235517 | MS.gene84760:CDS | 35.0% | |
| ACTTATTTAAGCTGACCTAC+TGG | - | 56129:235097-235116 | MS.gene84760:intergenic | 35.0% | |
| ATGTGAAAACCTATGAAGCA+CGG | - | 56129:236088-236107 | MS.gene84760:intergenic | 35.0% | |
| CAAGGTTCACTTGAAAACAA+GGG | + | 56129:236544-236563 | MS.gene84760:CDS | 35.0% | |
| CAGCTAGAAATCAGAAAAGA+GGG | + | 56129:234433-234452 | MS.gene84760:CDS | 35.0% | |
| CCTCAAAAGTCTCAAATATC+AGG | - | 56129:235862-235881 | MS.gene84760:intergenic | 35.0% | |
| GAAGAAACGTTAACAATCAC+AGG | - | 56129:235607-235626 | MS.gene84760:intergenic | 35.0% | |
| GAATCAGATAACTGAAGAAG+AGG | - | 56129:235583-235602 | MS.gene84760:intergenic | 35.0% | |
| GTTTGGAAGACTTGATATCT+TGG | + | 56129:234575-234594 | MS.gene84760:CDS | 35.0% | |
| TAATTCAGAGTCTACAACGA+TGG | + | 56129:236314-236333 | MS.gene84760:intron | 35.0% | |
| TAGCAGTATCACTATAGTCT+CGG | + | 56129:236115-236134 | MS.gene84760:intron | 35.0% | |
| TCATGATTCTTCATGCTCAT+AGG | + | 56129:234828-234847 | MS.gene84760:intron | 35.0% | |
| TGTATTAATTGCGTTTGTCC+GGG | + | 56129:236655-236674 | MS.gene84760:CDS | 35.0% | |
| TTCAGATATGCTGTTGTTAC+AGG | + | 56129:234342-234361 | MS.gene84760:intron | 35.0% | |
| TTCTACTGCAGGACTATTAA+AGG | + | 56129:235624-235643 | MS.gene84760:CDS | 35.0% | |
| ! | ACTGGCAATTGAGATTTTTG+AGG | - | 56129:235777-235796 | MS.gene84760:intergenic | 35.0% |
| ! | TAAACTGTCTGGGATGATAA+TGG | + | 56129:235390-235409 | MS.gene84760:intron | 35.0% |
| !! | AGCTTTTTCCAGAAGCTATT+TGG | - | 56129:235002-235021 | MS.gene84760:intergenic | 35.0% |
| !! | CCTGATATTTGAGACTTTTG+AGG | + | 56129:235859-235878 | MS.gene84760:intron | 35.0% |
| !! | CTAAGTTGGTCATCAAAACA+AGG | - | 56129:234854-234873 | MS.gene84760:intergenic | 35.0% |
| !! | GAGACTTTTGAGGACTAAAT+TGG | + | 56129:235869-235888 | MS.gene84760:intron | 35.0% |
| !! | GAGTTTGTTAAGACTCAGTT+TGG | + | 56129:234558-234577 | MS.gene84760:CDS | 35.0% |
| !! | TTGGTACTTTTCGTTTTTCG+AGG | + | 56129:235888-235907 | MS.gene84760:intron | 35.0% |
| !!! | AGCTGCTTTTGAGAGTTTAT+AGG | - | 56129:236590-236609 | MS.gene84760:intergenic | 35.0% |
| !!! | CATAAGCCATTTTTGAACAC+AGG | + | 56129:234920-234939 | MS.gene84760:intron | 35.0% |
| AGTTCGCCATAATAATAGCC+TGG | + | 56129:235240-235259 | MS.gene84760:intron | 40.0% | |
| GTTAACGTTTCTTCTACTGC+AGG | + | 56129:235613-235632 | MS.gene84760:CDS | 40.0% | |
| GTTCACTTGAAAACAAGGGT+TGG | + | 56129:236548-236567 | MS.gene84760:CDS | 40.0% | |
| TCAAGTATTTACACGCCAGT+AGG | + | 56129:235079-235098 | MS.gene84760:intron | 40.0% | |
| TCACCTATGAAGCATGGATA+CGG | + | 56129:235954-235973 | MS.gene84760:intron | 40.0% | |
| TGGTGGTAAAGAAACTACTG+AGG | + | 56129:235549-235568 | MS.gene84760:CDS | 40.0% | |
| TGTGTGCAGGTAAATAATGC+AGG | + | 56129:235319-235338 | MS.gene84760:intron | 40.0% | |
| ! | ATAAGCTAGAAGCCTTGTGT+AGG | - | 56129:236620-236639 | MS.gene84760:intergenic | 40.0% |
| ! | GCTAATCGACGAAGTACTAA+AGG | + | 56129:236501-236520 | MS.gene84760:CDS | 40.0% |
| ! | GTGTTTTCACCTATGAAGCA+TGG | + | 56129:235948-235967 | MS.gene84760:intron | 40.0% |
| ! | TACTTCGTCGATTAGCTCTT+CGG | - | 56129:236497-236516 | MS.gene84760:intergenic | 40.0% |
| ! | TATAAGTGTCGTGTTGGTGT+CGG | + | 56129:236040-236059 | MS.gene84760:intron | 40.0% |
| CAGCTGTGAATTCCTACACA+AGG | + | 56129:236605-236624 | MS.gene84760:CDS | 45.0% | |
| GATAAGTGTCCGTGCTTCAT+AGG | + | 56129:236076-236095 | MS.gene84760:intron | 45.0% | |
| GCACGGACACTTATCAGATT+AGG | - | 56129:236071-236090 | MS.gene84760:intergenic | 45.0% | |
| TGGTTTCAACGCAGACGATA+TGG | + | 56129:235348-235367 | MS.gene84760:CDS | 45.0% | |
| TGTCCGTATCCATGCTTCAT+AGG | - | 56129:235960-235979 | MS.gene84760:intergenic | 45.0% | |
| ! | CTGCACACAAATTTGGAACG+CGG | - | 56129:235308-235327 | MS.gene84760:intergenic | 45.0% |
| CGCGTTCCAAATTTGTGTGC+AGG | + | 56129:235306-235325 | MS.gene84760:intron | 50.0% | |
| TCGAGTGATTCCACCACTTC+TGG | + | 56129:236763-236782 | MS.gene84760:CDS | 50.0% | |
| !! | AGCGAAGAAGTGTCCAGAAG+TGG | - | 56129:236779-236798 | MS.gene84760:intergenic | 50.0% |
| !! | GAAGAAGTGTCCAGAAGTGG+TGG | - | 56129:236776-236795 | MS.gene84760:intergenic | 50.0% |
| !! | GGTGTCGGCGTGTCAGTGTC+TGG | - | 56129:235983-236002 | MS.gene84760:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 56129 | gene | 234235 | 236822 | 234235 | ID=MS.gene84760 |
| 56129 | mRNA | 234235 | 236822 | 234235 | ID=MS.gene84760.t1;Parent=MS.gene84760 |
| 56129 | exon | 234235 | 234254 | 234235 | ID=MS.gene84760.t1.exon1;Parent=MS.gene84760.t1 |
| 56129 | CDS | 234235 | 234254 | 234235 | ID=cds.MS.gene84760.t1;Parent=MS.gene84760.t1 |
| 56129 | exon | 234347 | 234596 | 234347 | ID=MS.gene84760.t1.exon2;Parent=MS.gene84760.t1 |
| 56129 | CDS | 234347 | 234596 | 234347 | ID=cds.MS.gene84760.t1;Parent=MS.gene84760.t1 |
| 56129 | exon | 235328 | 235369 | 235328 | ID=MS.gene84760.t1.exon3;Parent=MS.gene84760.t1 |
| 56129 | CDS | 235328 | 235369 | 235328 | ID=cds.MS.gene84760.t1;Parent=MS.gene84760.t1 |
| 56129 | exon | 235472 | 235645 | 235472 | ID=MS.gene84760.t1.exon4;Parent=MS.gene84760.t1 |
| 56129 | CDS | 235472 | 235645 | 235472 | ID=cds.MS.gene84760.t1;Parent=MS.gene84760.t1 |
| 56129 | exon | 236442 | 236822 | 236442 | ID=MS.gene84760.t1.exon5;Parent=MS.gene84760.t1 |
| 56129 | CDS | 236442 | 236822 | 236442 | ID=cds.MS.gene84760.t1;Parent=MS.gene84760.t1 |
| Gene Sequence |
| Protein sequence |
