Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056711.t1 | XP_003627594.1 | 97.2 | 288 | 7 | 1 | 1 | 288 | 1 | 287 | 5.90E-143 | 516.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056711.t1 | Q9M2E2 | 53.7 | 296 | 129 | 3 | 1 | 288 | 1 | 296 | 1.6e-80 | 300.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056711.t1 | G7LBT2 | 97.2 | 288 | 7 | 1 | 1 | 288 | 1 | 287 | 4.3e-143 | 516.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052560 | MS.gene056711 | 0.807331 | 5.32E-50 | -1.69E-46 |
| MS.gene056711 | MS.gene070735 | 0.829287 | 5.60E-55 | -1.69E-46 |
| MS.gene056711 | MS.gene84760 | 0.925972 | 8.88E-91 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056711.t1 | MTR_8g031910 | 97.569 | 288 | 6 | 1 | 1 | 288 | 1 | 287 | 0.0 | 576 |
| MS.gene056711.t1 | MTR_7g076660 | 68.403 | 288 | 89 | 2 | 1 | 288 | 1 | 286 | 3.70e-142 | 401 |
| MS.gene056711.t1 | MTR_7g076660 | 68.198 | 283 | 88 | 2 | 6 | 288 | 7 | 287 | 6.95e-140 | 395 |
| MS.gene056711.t1 | MTR_7g076655 | 66.667 | 288 | 94 | 2 | 1 | 288 | 1 | 286 | 4.17e-139 | 394 |
| MS.gene056711.t1 | MTR_7g076660 | 67.300 | 263 | 84 | 2 | 26 | 288 | 2 | 262 | 8.28e-128 | 364 |
| MS.gene056711.t1 | MTR_8g031990 | 58.333 | 300 | 111 | 4 | 1 | 288 | 1 | 298 | 1.86e-121 | 349 |
| MS.gene056711.t1 | MTR_8g032010 | 57.333 | 300 | 114 | 4 | 1 | 288 | 1 | 298 | 4.49e-119 | 343 |
| MS.gene056711.t1 | MTR_8g032000 | 56.333 | 300 | 117 | 4 | 1 | 288 | 1 | 298 | 3.60e-116 | 336 |
| MS.gene056711.t1 | MTR_8g031960 | 60.137 | 291 | 102 | 5 | 7 | 285 | 8 | 296 | 1.20e-115 | 335 |
| MS.gene056711.t1 | MTR_7g076665 | 57.095 | 296 | 118 | 4 | 1 | 288 | 1 | 295 | 6.35e-115 | 333 |
| MS.gene056711.t1 | MTR_8g031980 | 57.000 | 300 | 115 | 4 | 1 | 288 | 1 | 298 | 6.66e-115 | 333 |
| MS.gene056711.t1 | MTR_8g032020 | 55.405 | 296 | 117 | 4 | 6 | 288 | 7 | 300 | 1.25e-110 | 322 |
| MS.gene056711.t1 | MTR_8g031630 | 56.333 | 300 | 116 | 6 | 1 | 288 | 1 | 297 | 1.46e-109 | 319 |
| MS.gene056711.t1 | MTR_8g031940 | 54.785 | 303 | 118 | 5 | 1 | 288 | 1 | 299 | 2.19e-109 | 319 |
| MS.gene056711.t1 | MTR_8g031900 | 54.576 | 295 | 125 | 5 | 1 | 288 | 1 | 293 | 1.77e-108 | 316 |
| MS.gene056711.t1 | MTR_8g031610 | 56.507 | 292 | 113 | 6 | 8 | 288 | 6 | 294 | 2.33e-106 | 311 |
| MS.gene056711.t1 | MTR_8g031600 | 54.333 | 300 | 123 | 4 | 1 | 288 | 1 | 298 | 5.98e-105 | 308 |
| MS.gene056711.t1 | MTR_8g031650 | 56.357 | 291 | 112 | 6 | 10 | 288 | 104 | 391 | 6.27e-104 | 308 |
| MS.gene056711.t1 | MTR_8g031650 | 58.586 | 99 | 39 | 2 | 159 | 255 | 2 | 100 | 1.12e-32 | 124 |
| MS.gene056711.t1 | MTR_8g031650 | 56.357 | 291 | 112 | 6 | 10 | 288 | 270 | 557 | 2.09e-102 | 310 |
| MS.gene056711.t1 | MTR_8g031650 | 56.929 | 267 | 102 | 5 | 1 | 255 | 1 | 266 | 4.03e-95 | 291 |
| MS.gene056711.t1 | MTR_5g062280 | 50.336 | 298 | 135 | 5 | 1 | 288 | 1 | 295 | 1.93e-98 | 291 |
| MS.gene056711.t1 | MTR_8g031850 | 47.458 | 295 | 108 | 7 | 1 | 288 | 1 | 255 | 6.30e-84 | 253 |
| MS.gene056711.t1 | MTR_3g079320 | 49.658 | 292 | 126 | 6 | 6 | 279 | 10 | 298 | 1.61e-82 | 251 |
| MS.gene056711.t1 | MTR_7g106800 | 47.518 | 282 | 100 | 4 | 7 | 284 | 9 | 246 | 1.05e-79 | 242 |
| MS.gene056711.t1 | MTR_5g083430 | 58.382 | 173 | 71 | 1 | 116 | 288 | 13 | 184 | 1.12e-67 | 209 |
| MS.gene056711.t1 | MTR_3g098470 | 42.466 | 292 | 139 | 8 | 4 | 283 | 32 | 306 | 6.69e-62 | 198 |
| MS.gene056711.t1 | MTR_1g031180 | 43.003 | 293 | 136 | 9 | 4 | 283 | 37 | 311 | 8.39e-58 | 188 |
| MS.gene056711.t1 | MTR_8g032030 | 58.235 | 170 | 57 | 3 | 6 | 162 | 6 | 174 | 2.11e-57 | 184 |
| MS.gene056711.t1 | MTR_4g087460 | 38.127 | 299 | 158 | 7 | 4 | 288 | 19 | 304 | 7.63e-55 | 180 |
| MS.gene056711.t1 | MTR_8g096060 | 39.384 | 292 | 145 | 9 | 4 | 283 | 34 | 305 | 6.46e-51 | 170 |
| MS.gene056711.t1 | MTR_4g105310 | 27.381 | 252 | 128 | 10 | 9 | 249 | 51 | 258 | 8.36e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056711.t1 | AT3G61220 | 56.757 | 296 | 120 | 3 | 1 | 288 | 1 | 296 | 8.90e-117 | 337 |
| MS.gene056711.t1 | AT3G61220 | 57.241 | 290 | 116 | 3 | 7 | 288 | 14 | 303 | 1.32e-115 | 335 |
| MS.gene056711.t1 | AT3G61220 | 57.241 | 290 | 116 | 3 | 7 | 288 | 38 | 327 | 3.34e-115 | 335 |
| MS.gene056711.t1 | AT2G24190 | 53.691 | 298 | 126 | 4 | 1 | 288 | 1 | 296 | 1.29e-110 | 322 |
| MS.gene056711.t1 | AT2G24190 | 54.110 | 292 | 122 | 4 | 7 | 288 | 12 | 301 | 9.38e-110 | 320 |
| MS.gene056711.t1 | AT1G01800 | 55.068 | 296 | 122 | 4 | 3 | 288 | 1 | 295 | 1.40e-107 | 314 |
| MS.gene056711.t1 | AT1G01800 | 54.106 | 207 | 85 | 3 | 91 | 288 | 55 | 260 | 3.32e-69 | 215 |
| MS.gene056711.t1 | AT5G51030 | 40.203 | 296 | 147 | 10 | 4 | 286 | 35 | 313 | 1.33e-59 | 192 |
| MS.gene056711.t1 | AT3G59710 | 41.844 | 282 | 142 | 7 | 4 | 280 | 16 | 280 | 3.97e-59 | 191 |
| MS.gene056711.t1 | AT3G59710 | 41.844 | 282 | 142 | 7 | 4 | 280 | 26 | 290 | 4.99e-59 | 191 |
| MS.gene056711.t1 | AT5G61830 | 41.034 | 290 | 145 | 6 | 6 | 283 | 36 | 311 | 2.47e-58 | 189 |
| MS.gene056711.t1 | AT5G61830 | 41.034 | 290 | 145 | 6 | 6 | 283 | 36 | 311 | 2.47e-58 | 189 |
| MS.gene056711.t1 | AT3G59710 | 41.844 | 282 | 142 | 7 | 4 | 280 | 45 | 309 | 3.19e-58 | 189 |
| MS.gene056711.t1 | AT5G50600 | 31.169 | 154 | 94 | 3 | 7 | 160 | 48 | 189 | 1.65e-13 | 70.1 |
| MS.gene056711.t1 | AT5G50700 | 31.169 | 154 | 94 | 3 | 7 | 160 | 48 | 189 | 1.65e-13 | 70.1 |
| MS.gene056711.t1 | AT4G24050 | 29.730 | 259 | 117 | 12 | 9 | 250 | 37 | 247 | 7.14e-13 | 67.8 |
| MS.gene056711.t1 | AT4G24050 | 29.730 | 259 | 117 | 12 | 9 | 250 | 37 | 247 | 8.54e-13 | 68.2 |
| MS.gene056711.t1 | AT5G50130 | 25.517 | 290 | 169 | 10 | 6 | 281 | 3 | 259 | 2.76e-12 | 66.2 |
| MS.gene056711.t1 | AT5G50130 | 26.141 | 241 | 145 | 8 | 9 | 249 | 39 | 246 | 5.70e-11 | 62.0 |
Find 49 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTACTGCAGGACTATTAA+AGG | 0.190820 | 8.4:+65170737 | MS.gene056711:CDS |
| TTCAGATATGCTGTTGTTAC+AGG | 0.201198 | 8.4:+65169423 | MS.gene056711:intron |
| AGTTCCCTCCAATTAATAAT+TGG | 0.237001 | 8.4:-65170591 | None:intergenic |
| TCGAGTGATTCCACCACTTC+TGG | 0.273816 | 8.4:+65171872 | MS.gene056711:CDS |
| TAGGATTGGAAACTGTTAAA+AGG | 0.292489 | 8.4:+65169460 | MS.gene056711:CDS |
| ACCAATGAAGCAATACTAAA+AGG | 0.302446 | 8.4:-65169615 | None:intergenic |
| AGGTTGAACCAATTATTAAT+TGG | 0.308846 | 8.4:+65170583 | MS.gene056711:intron |
| GGTATATTATCTGTTGAAAA+TGG | 0.316053 | 8.4:+65171818 | MS.gene056711:CDS |
| ACGCAATTAATACATAAGTT+TGG | 0.345471 | 8.4:-65171755 | None:intergenic |
| ATGTATTAATTGCGTTTGTC+CGG | 0.349424 | 8.4:+65171763 | MS.gene056711:CDS |
| GTTTGGAAGACTTGATATCT+TGG | 0.353617 | 8.4:+65169656 | MS.gene056711:CDS |
| ACAGGATCAAATAAAGGTAT+AGG | 0.380633 | 8.4:+65169441 | MS.gene056711:CDS |
| TGGTTTCAACACAGACGATA+TGG | 0.383538 | 8.4:+65170460 | MS.gene056711:CDS |
| GTTAAAAGGTTGGCTTCAAA+TGG | 0.389366 | 8.4:+65169474 | MS.gene056711:CDS |
| TGCATAATAACAAATTACTA+TGG | 0.411597 | 8.4:+65170642 | MS.gene056711:CDS |
| GTAAATAATGCAGGAATCAA+TGG | 0.443701 | 8.4:+65170440 | MS.gene056711:CDS |
| GTTAATGTTTCTTCTACTGC+AGG | 0.448645 | 8.4:+65170726 | MS.gene056711:CDS |
| GAGTTTGTTAAGACTCAGTT+TGG | 0.448827 | 8.4:+65169639 | MS.gene056711:CDS |
| ATTGGAAACTGTTAAAAGGT+TGG | 0.449470 | 8.4:+65169464 | MS.gene056711:CDS |
| ATCAAATAAAGGTATAGGAT+TGG | 0.463443 | 8.4:+65169446 | MS.gene056711:CDS |
| GTTGTTACAGGATCAAATAA+AGG | 0.492642 | 8.4:+65169435 | MS.gene056711:CDS |
| TGTATTAATTGCGTTTGTCC+GGG | 0.494685 | 8.4:+65171764 | MS.gene056711:CDS |
| CTATGGCAATTTCAAAAGAA+AGG | 0.498850 | 8.4:+65169313 | None:intergenic |
| TTGAACCAATTATTAATTGG+AGG | 0.500877 | 8.4:+65170586 | MS.gene056711:CDS |
| TACCTCGTCTATTAGCTCTT+CGG | 0.500938 | 8.4:-65171603 | None:intergenic |
| TTCAGTACATATCAAACGAA+TGG | 0.506130 | 8.4:+65171546 | MS.gene056711:intron |
| CATGTGCAGGTAAATAATGC+AGG | 0.516920 | 8.4:+65170431 | MS.gene056711:intron |
| ACAGCTAGAAATCAGAAAAG+AGG | 0.518413 | 8.4:+65169513 | MS.gene056711:CDS |
| ACATATCAAACGAATGGGCT+AGG | 0.522049 | 8.4:+65171552 | MS.gene056711:CDS |
| TGAACCAATTATTAATTGGA+GGG | 0.526022 | 8.4:+65170587 | MS.gene056711:CDS |
| GAATCAGATAACTGAAGAAG+AGG | 0.526731 | 8.4:-65170693 | None:intergenic |
| TCAGTACATATCAAACGAAT+GGG | 0.528974 | 8.4:+65171547 | MS.gene056711:intron |
| GAAGAAACATTAACAATCAC+AGG | 0.532332 | 8.4:-65170717 | None:intergenic |
| TTATAGGCACAAAGATATGT+TGG | 0.548863 | 8.4:-65171680 | None:intergenic |
| ACAAGGTTCACTTGAAAACA+AGG | 0.549206 | 8.4:+65171652 | MS.gene056711:CDS |
| CAGCTAGAAATCAGAAAAGA+GGG | 0.559811 | 8.4:+65169514 | MS.gene056711:CDS |
| GCTAATAGACGAGGTACTGA+AGG | 0.563423 | 8.4:+65171610 | MS.gene056711:CDS |
| AGCGAAGAAGTGTCCAGAAG+TGG | 0.605903 | 8.4:-65171885 | None:intergenic |
| GTTCACTTGAAAACAAGGGT+TGG | 0.606906 | 8.4:+65171657 | MS.gene056711:CDS |
| ACTGAGTCAAACTTATGAGA+TGG | 0.614913 | 8.4:+65170611 | MS.gene056711:CDS |
| ATAAGCTAGAAGCCTTGTGT+AGG | 0.622776 | 8.4:-65171726 | None:intergenic |
| ATAATAACAAATTACTATGG+TGG | 0.628363 | 8.4:+65170645 | MS.gene056711:CDS |
| CAGCTGTGAATTCCTACACA+AGG | 0.629636 | 8.4:+65171714 | MS.gene056711:CDS |
| TTTCTGAAAGACTTCAAACA+AGG | 0.631673 | 8.4:+65171635 | MS.gene056711:CDS |
| ACAGATATGAATAGAAACAC+AGG | 0.645826 | 8.4:+65171797 | MS.gene056711:CDS |
| GAAGAAGTGTCCAGAAGTGG+TGG | 0.653264 | 8.4:-65171882 | None:intergenic |
| CAAGGTTCACTTGAAAACAA+GGG | 0.660578 | 8.4:+65171653 | MS.gene056711:CDS |
| ATCCGAAGAGCTAATAGACG+AGG | 0.706099 | 8.4:+65171601 | MS.gene056711:CDS |
| TGGTGGTAAAGAAACTACTG+AGG | 0.726056 | 8.4:+65170662 | MS.gene056711:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGATAAAAGAAATTAAAA+AGG | - | chr8.4:65169379-65169398 | None:intergenic | 10.0% |
| !!! | ATATATTTTTTTAGTTATCT+TGG | + | chr8.4:65169884-65169903 | MS.gene056711:intron | 10.0% |
| !! | TTCTTGATTCTTAATTATTT+AGG | + | chr8.4:65169857-65169876 | MS.gene056711:intron | 15.0% |
| !!! | ATGTTTTTCATTAGTTAATT+TGG | - | chr8.4:65171348-65171367 | None:intergenic | 15.0% |
| !!! | TTTAATTTCTTTTATCAAAG+TGG | + | chr8.4:65169380-65169399 | MS.gene056711:intron | 15.0% |
| !! | AAAAAATGATGAACTCTATA+TGG | - | chr8.4:65171015-65171034 | None:intergenic | 20.0% |
| !! | AAAATTCAAGGCTATTATTA+TGG | - | chr8.4:65170411-65170430 | None:intergenic | 20.0% |
| !! | ATAATAACAAATTACTATGG+TGG | + | chr8.4:65170645-65170664 | MS.gene056711:CDS | 20.0% |
| !! | ATTCTGAATTACCATTTATT+TGG | + | chr8.4:65169796-65169815 | MS.gene056711:intron | 20.0% |
| !! | CTAAGTTATTTATCAAAACA+AGG | - | chr8.4:65169947-65169966 | None:intergenic | 20.0% |
| !! | CTCAAAAAATTATCCTATAA+AGG | + | chr8.4:65170927-65170946 | MS.gene056711:intron | 20.0% |
| !! | TGAATTTCTCAAATTATTAG+TGG | - | chr8.4:65171112-65171131 | None:intergenic | 20.0% |
| !! | TGCATAATAACAAATTACTA+TGG | + | chr8.4:65170642-65170661 | MS.gene056711:CDS | 20.0% |
| !!! | AAGGATCTTTTAACATTTAT+TGG | - | chr8.4:65169360-65169379 | None:intergenic | 20.0% |
| !!! | AATTGGTACTTTTCATTTTT+CGG | + | chr8.4:65170986-65171005 | MS.gene056711:intron | 20.0% |
| !!! | ATTATCACAAATTTTAGTCA+TGG | - | chr8.4:65170374-65170393 | None:intergenic | 20.0% |
| !!! | CAATATTTTTCGTTTTTTAG+AGG | - | chr8.4:65170848-65170867 | None:intergenic | 20.0% |
| !!! | TTTTTTGTATATGACTATTC+AGG | + | chr8.4:65170563-65170582 | MS.gene056711:intron | 20.0% |
| ! | AAAAAACAAAGCTTAATCAG+AGG | - | chr8.4:65170547-65170566 | None:intergenic | 25.0% |
| ! | ACAAACTTTGGATAAACTAA+TGG | + | chr8.4:65170326-65170345 | MS.gene056711:intron | 25.0% |
| ! | ACAGTTTATTTATGTTGTTC+AGG | - | chr8.4:65171509-65171528 | None:intergenic | 25.0% |
| ! | ACGCAATTAATACATAAGTT+TGG | - | chr8.4:65171758-65171777 | None:intergenic | 25.0% |
| ! | ACTAACATAAGACAGATATA+AGG | - | chr8.4:65171282-65171301 | None:intergenic | 25.0% |
| ! | ACTAATGAAATACACATCAA+AGG | + | chr8.4:65171321-65171340 | MS.gene056711:intron | 25.0% |
| ! | ACTGTTTGAAAGAACTTATA+AGG | - | chr8.4:65170141-65170160 | None:intergenic | 25.0% |
| ! | AGGTTGAACCAATTATTAAT+TGG | + | chr8.4:65170583-65170602 | MS.gene056711:intron | 25.0% |
| ! | AGTTAATTCAGAGTCTATAA+CGG | + | chr8.4:65171424-65171443 | MS.gene056711:intron | 25.0% |
| ! | ATCATAATGATCCAGAAAAT+TGG | - | chr8.4:65169708-65169727 | None:intergenic | 25.0% |
| ! | CTGTTTGAAAGAACTTATAA+GGG | - | chr8.4:65170140-65170159 | None:intergenic | 25.0% |
| ! | GGTATATTATCTGTTGAAAA+TGG | + | chr8.4:65171818-65171837 | MS.gene056711:CDS | 25.0% |
| ! | TGAACCAATTATTAATTGGA+GGG | + | chr8.4:65170587-65170606 | MS.gene056711:CDS | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+TGG | + | chr8.4:65171128-65171147 | MS.gene056711:intron | 25.0% |
| ! | TTGAACCAATTATTAATTGG+AGG | + | chr8.4:65170586-65170605 | MS.gene056711:CDS | 25.0% |
| ! | TTGATGTGTATTTCATTAGT+CGG | - | chr8.4:65171321-65171340 | None:intergenic | 25.0% |
| ! | TTGGTCCAAATAAACATAAA+AGG | - | chr8.4:65169341-65169360 | None:intergenic | 25.0% |
| ! | TTTATCCAAGTGTTCAAAAA+TGG | - | chr8.4:65170023-65170042 | None:intergenic | 25.0% |
| !! | AAGTCTTTGAATTTTTCTGA+AGG | - | chr8.4:65170818-65170837 | None:intergenic | 25.0% |
| !! | AGGTACCTTTTATGTTTATT+TGG | + | chr8.4:65169333-65169352 | MS.gene056711:intron | 25.0% |
| !! | ATCAAATAAAGGTATAGGAT+TGG | + | chr8.4:65169446-65169465 | MS.gene056711:CDS | 25.0% |
| !! | TTAATGTAAAGCCAATTTTC+TGG | + | chr8.4:65169694-65169713 | MS.gene056711:intron | 25.0% |
| !!! | AGAAAATTGGCTTTACATTA+AGG | - | chr8.4:65169695-65169714 | None:intergenic | 25.0% |
| !!! | ATATCTGTTTTAACAAAACC+CGG | - | chr8.4:65171785-65171804 | None:intergenic | 25.0% |
| !!! | ATTGGTACTTTTCATTTTTC+GGG | + | chr8.4:65170987-65171006 | MS.gene056711:intron | 25.0% |
| !!! | CTTGTTTTCTTTAACTGTTT+GGG | + | chr8.4:65170491-65170510 | MS.gene056711:intron | 25.0% |
| ACAGATATGAATAGAAACAC+AGG | + | chr8.4:65171797-65171816 | MS.gene056711:CDS | 30.0% | |
| ACATACAAGAAAAACATTCG+AGG | + | chr8.4:65171385-65171404 | MS.gene056711:intron | 30.0% | |
| ACATTGTAACTGATGTAAAG+TGG | - | chr8.4:65171485-65171504 | None:intergenic | 30.0% | |
| ACCAATGAAGCAATACTAAA+AGG | - | chr8.4:65169618-65169637 | None:intergenic | 30.0% | |
| AGTTCCCTCCAATTAATAAT+TGG | - | chr8.4:65170594-65170613 | None:intergenic | 30.0% | |
| ATGTATTAATTGCGTTTGTC+CGG | + | chr8.4:65171763-65171782 | MS.gene056711:CDS | 30.0% | |
| ATTGGAAACTGTTAAAAGGT+TGG | + | chr8.4:65169464-65169483 | MS.gene056711:CDS | 30.0% | |
| CTATCAGAGATTATTTAGAC+TGG | - | chr8.4:65170895-65170914 | None:intergenic | 30.0% | |
| CTGATGTAAAGTGGTAATTT+CGG | - | chr8.4:65171476-65171495 | None:intergenic | 30.0% | |
| GAAGAAACATTAACAATCAC+AGG | - | chr8.4:65170720-65170739 | None:intergenic | 30.0% | |
| GCACAAACACTTCAAATTAA+AGG | + | chr8.4:65170273-65170292 | MS.gene056711:intron | 30.0% | |
| GTAAATAATGCAGGAATCAA+TGG | + | chr8.4:65170440-65170459 | MS.gene056711:CDS | 30.0% | |
| GTTGTTACAGGATCAAATAA+AGG | + | chr8.4:65169435-65169454 | MS.gene056711:CDS | 30.0% | |
| GTTTATCCAAAGTTTGTAAC+AGG | - | chr8.4:65170323-65170342 | None:intergenic | 30.0% | |
| TAGGATTGGAAACTGTTAAA+AGG | + | chr8.4:65169460-65169479 | MS.gene056711:CDS | 30.0% | |
| TCAGTACATATCAAACGAAT+GGG | + | chr8.4:65171547-65171566 | MS.gene056711:intron | 30.0% | |
| TCATAGGTGAAAACACATTT+CGG | - | chr8.4:65171044-65171063 | None:intergenic | 30.0% | |
| TCTCAAATTATTAGTGGTGT+TGG | - | chr8.4:65171106-65171125 | None:intergenic | 30.0% | |
| TGATAAAAGCTCTTAGCAAA+AGG | - | chr8.4:65169976-65169995 | None:intergenic | 30.0% | |
| TTATAGGCACAAAGATATGT+TGG | - | chr8.4:65171683-65171702 | None:intergenic | 30.0% | |
| TTCAGTACATATCAAACGAA+TGG | + | chr8.4:65171546-65171565 | MS.gene056711:intron | 30.0% | |
| TTCTTCATTCTCATTCTCAT+AGG | + | chr8.4:65169921-65169940 | MS.gene056711:intron | 30.0% | |
| ! | ACAGGATCAAATAAAGGTAT+AGG | + | chr8.4:65169441-65169460 | MS.gene056711:CDS | 30.0% |
| ! | ACTGTTTGGGATGATAATAT+TGG | + | chr8.4:65170504-65170523 | MS.gene056711:intron | 30.0% |
| ! | GTAATTATATGTGTTGGTGT+CGG | + | chr8.4:65171134-65171153 | MS.gene056711:intron | 30.0% |
| ! | TACCATTTATTTGGTGAATC+TGG | + | chr8.4:65169805-65169824 | MS.gene056711:intron | 30.0% |
| ! | TCCTTTTAGTATTGCTTCAT+TGG | + | chr8.4:65169614-65169633 | MS.gene056711:CDS | 30.0% |
| ! | TTTCTGAAAGACTTCAAACA+AGG | + | chr8.4:65171635-65171654 | MS.gene056711:CDS | 30.0% |
| !! | GCTTGTTTTCTTTAACTGTT+TGG | + | chr8.4:65170490-65170509 | MS.gene056711:intron | 30.0% |
| !! | TTGGTACTTTTCATTTTTCG+GGG | + | chr8.4:65170988-65171007 | MS.gene056711:intron | 30.0% |
| !!! | ACTTATTTTAGCTGATCTAC+TGG | - | chr8.4:65170180-65170199 | None:intergenic | 30.0% |
| !!! | ATAAGCCATTTTTGAACACT+TGG | + | chr8.4:65170015-65170034 | MS.gene056711:intron | 30.0% |
| ACAAGGTTCACTTGAAAACA+AGG | + | chr8.4:65171652-65171671 | MS.gene056711:CDS | 35.0% | |
| ACAGCTAGAAATCAGAAAAG+AGG | + | chr8.4:65169513-65169532 | MS.gene056711:CDS | 35.0% | |
| ACTGAGTCAAACTTATGAGA+TGG | + | chr8.4:65170611-65170630 | MS.gene056711:CDS | 35.0% | |
| ATCCAAAGTTTGTAACAGGT+TGG | - | chr8.4:65170319-65170338 | None:intergenic | 35.0% | |
| CAAGGTTCACTTGAAAACAA+GGG | + | chr8.4:65171653-65171672 | MS.gene056711:CDS | 35.0% | |
| CACCAGATTCACCAAATAAA+TGG | - | chr8.4:65169810-65169829 | None:intergenic | 35.0% | |
| CAGCTAGAAATCAGAAAAGA+GGG | + | chr8.4:65169514-65169533 | MS.gene056711:CDS | 35.0% | |
| CAGGCAAATTAGTCCTTTAT+AGG | - | chr8.4:65170943-65170962 | None:intergenic | 35.0% | |
| CCTCAAAAGTCTCAAATATC+AGG | - | chr8.4:65170962-65170981 | None:intergenic | 35.0% | |
| GAATCAGATAACTGAAGAAG+AGG | - | chr8.4:65170696-65170715 | None:intergenic | 35.0% | |
| GTTAATGTTTCTTCTACTGC+AGG | + | chr8.4:65170726-65170745 | MS.gene056711:CDS | 35.0% | |
| GTTTGGAAGACTTGATATCT+TGG | + | chr8.4:65169656-65169675 | MS.gene056711:CDS | 35.0% | |
| TACCTGCACATGAAAATTCA+AGG | - | chr8.4:65170423-65170442 | None:intergenic | 35.0% | |
| TCCAAAGTTTGTAACAGGTT+GGG | - | chr8.4:65170318-65170337 | None:intergenic | 35.0% | |
| TGTATTAATTGCGTTTGTCC+GGG | + | chr8.4:65171764-65171783 | MS.gene056711:CDS | 35.0% | |
| TTCAGATATGCTGTTGTTAC+AGG | + | chr8.4:65169423-65169442 | MS.gene056711:intron | 35.0% | |
| TTCTACTGCAGGACTATTAA+AGG | + | chr8.4:65170737-65170756 | MS.gene056711:CDS | 35.0% | |
| ! | CTTCAAATTAAAGGCGTGTT+TGG | + | chr8.4:65170282-65170301 | MS.gene056711:intron | 35.0% |
| ! | TTATTTGGTGAATCTGGTGA+AGG | + | chr8.4:65169811-65169830 | MS.gene056711:intron | 35.0% |
| !! | CCTGATATTTGAGACTTTTG+AGG | + | chr8.4:65170959-65170978 | MS.gene056711:intron | 35.0% |
| !! | GAGACTTTTGAGGACTAAAT+TGG | + | chr8.4:65170969-65170988 | MS.gene056711:intron | 35.0% |
| !! | GAGTTTGTTAAGACTCAGTT+TGG | + | chr8.4:65169639-65169658 | MS.gene056711:CDS | 35.0% |
| !! | GTTAAAAGGTTGGCTTCAAA+TGG | + | chr8.4:65169474-65169493 | MS.gene056711:CDS | 35.0% |
| !!! | AGCTGCTTTTGAGAGTTTAT+AGG | - | chr8.4:65171699-65171718 | None:intergenic | 35.0% |
| CATGTGCAGGTAAATAATGC+AGG | + | chr8.4:65170431-65170450 | MS.gene056711:intron | 40.0% | |
| CTGCAGGACTATTAAAGGTA+AGG | + | chr8.4:65170742-65170761 | MS.gene056711:intron | 40.0% | |
| GCACGAACACTTATCAGATT+AGG | - | chr8.4:65171189-65171208 | None:intergenic | 40.0% | |
| GTTCACTTGAAAACAAGGGT+TGG | + | chr8.4:65171657-65171676 | MS.gene056711:CDS | 40.0% | |
| TCACCTATGAAGCATGGATA+CGG | + | chr8.4:65171054-65171073 | MS.gene056711:intron | 40.0% | |
| TCCCAACCTGTTACAAACTT+TGG | + | chr8.4:65170314-65170333 | MS.gene056711:intron | 40.0% | |
| TGGTGGTAAAGAAACTACTG+AGG | + | chr8.4:65170662-65170681 | MS.gene056711:CDS | 40.0% | |
| TGGTTTCAACACAGACGATA+TGG | + | chr8.4:65170460-65170479 | MS.gene056711:CDS | 40.0% | |
| ! | ACATATCAAACGAATGGGCT+AGG | + | chr8.4:65171552-65171571 | MS.gene056711:CDS | 40.0% |
| ! | AGCCTTGAATTTTCATGTGC+AGG | + | chr8.4:65170418-65170437 | MS.gene056711:intron | 40.0% |
| ! | ATAAGCTAGAAGCCTTGTGT+AGG | - | chr8.4:65171729-65171748 | None:intergenic | 40.0% |
| ! | GTGTTTTCACCTATGAAGCA+TGG | + | chr8.4:65171048-65171067 | MS.gene056711:intron | 40.0% |
| ! | TACCTCGTCTATTAGCTCTT+CGG | - | chr8.4:65171606-65171625 | None:intergenic | 40.0% |
| ! | TTTGTAACAGGTTGGGACAA+CGG | - | chr8.4:65170311-65170330 | None:intergenic | 40.0% |
| ATCCGAAGAGCTAATAGACG+AGG | + | chr8.4:65171601-65171620 | MS.gene056711:CDS | 45.0% | |
| ATGAAGCATGGATACGGACA+CGG | + | chr8.4:65171060-65171079 | MS.gene056711:intron | 45.0% | |
| CAGCTGTGAATTCCTACACA+AGG | + | chr8.4:65171714-65171733 | MS.gene056711:CDS | 45.0% | |
| TGTCCGTATCCATGCTTCAT+AGG | - | chr8.4:65171060-65171079 | None:intergenic | 45.0% | |
| TTATCAGATTAGGCGTGTCC+AGG | - | chr8.4:65171179-65171198 | None:intergenic | 45.0% | |
| !! | GCTAATAGACGAGGTACTGA+AGG | + | chr8.4:65171610-65171629 | MS.gene056711:CDS | 45.0% |
| TCGAGTGATTCCACCACTTC+TGG | + | chr8.4:65171872-65171891 | MS.gene056711:CDS | 50.0% | |
| !! | AGCGAAGAAGTGTCCAGAAG+TGG | - | chr8.4:65171888-65171907 | None:intergenic | 50.0% |
| !! | GAAGAAGTGTCCAGAAGTGG+TGG | - | chr8.4:65171885-65171904 | None:intergenic | 50.0% |
| GATTAGGCGTGTCCAGGTGT+CGG | - | chr8.4:65171173-65171192 | None:intergenic | 55.0% | |
| TGTTGGCGTCTCAGTGTGTC+TGG | - | chr8.4:65171089-65171108 | None:intergenic | 55.0% | |
| CACGACACGTGTCCGACACC+TGG | + | chr8.4:65171158-65171177 | MS.gene056711:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 65169315 | 65171931 | 65169315 | ID=MS.gene056711 |
| chr8.4 | mRNA | 65169315 | 65171931 | 65169315 | ID=MS.gene056711.t1;Parent=MS.gene056711 |
| chr8.4 | exon | 65169315 | 65169334 | 65169315 | ID=MS.gene056711.t1.exon1;Parent=MS.gene056711.t1 |
| chr8.4 | CDS | 65169315 | 65169334 | 65169315 | ID=cds.MS.gene056711.t1;Parent=MS.gene056711.t1 |
| chr8.4 | exon | 65169428 | 65169677 | 65169428 | ID=MS.gene056711.t1.exon2;Parent=MS.gene056711.t1 |
| chr8.4 | CDS | 65169428 | 65169677 | 65169428 | ID=cds.MS.gene056711.t1;Parent=MS.gene056711.t1 |
| chr8.4 | exon | 65170440 | 65170481 | 65170440 | ID=MS.gene056711.t1.exon3;Parent=MS.gene056711.t1 |
| chr8.4 | CDS | 65170440 | 65170481 | 65170440 | ID=cds.MS.gene056711.t1;Parent=MS.gene056711.t1 |
| chr8.4 | exon | 65170585 | 65170758 | 65170585 | ID=MS.gene056711.t1.exon4;Parent=MS.gene056711.t1 |
| chr8.4 | CDS | 65170585 | 65170758 | 65170585 | ID=cds.MS.gene056711.t1;Parent=MS.gene056711.t1 |
| chr8.4 | exon | 65171551 | 65171931 | 65171551 | ID=MS.gene056711.t1.exon5;Parent=MS.gene056711.t1 |
| chr8.4 | CDS | 65171551 | 65171931 | 65171551 | ID=cds.MS.gene056711.t1;Parent=MS.gene056711.t1 |
| Gene Sequence |
| Protein sequence |
