Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84767.t1 | XP_027345640.1 | 100 | 41 | 0 | 0 | 1 | 41 | 225 | 265 | 5.30E-14 | 87 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84767.t1 | P53681 | 95.0 | 40 | 2 | 0 | 2 | 41 | 241 | 280 | 1.4e-15 | 83.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84767.t1 | G7JMG6 | 100.0 | 41 | 0 | 0 | 1 | 41 | 229 | 269 | 3.8e-14 | 87.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene059713 | MS.gene84767 | 0.809052 | 2.29E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84767.t1 | MTR_4g086660 | 100.000 | 41 | 0 | 0 | 1 | 41 | 229 | 269 | 3.88e-22 | 89.4 |
MS.gene84767.t1 | MTR_8g079790 | 92.500 | 40 | 3 | 0 | 2 | 41 | 221 | 260 | 2.17e-19 | 81.6 |
MS.gene84767.t1 | MTR_5g017830 | 82.500 | 40 | 7 | 0 | 2 | 41 | 227 | 266 | 1.21e-17 | 76.6 |
MS.gene84767.t1 | MTR_7g089480 | 80.000 | 40 | 8 | 0 | 2 | 41 | 234 | 273 | 2.39e-17 | 75.9 |
MS.gene84767.t1 | MTR_3g092230 | 80.000 | 40 | 8 | 0 | 2 | 41 | 231 | 270 | 3.07e-17 | 75.5 |
MS.gene84767.t1 | MTR_7g118020 | 80.000 | 40 | 8 | 0 | 2 | 41 | 237 | 276 | 3.33e-17 | 75.5 |
MS.gene84767.t1 | MTR_4g088560 | 70.455 | 44 | 13 | 0 | 45 | 88 | 116 | 159 | 8.91e-15 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84767.t1 | AT3G19100 | 92.500 | 40 | 3 | 0 | 2 | 41 | 237 | 276 | 4.28e-20 | 84.0 |
MS.gene84767.t1 | AT3G50530 | 90.000 | 40 | 4 | 0 | 2 | 41 | 241 | 280 | 1.68e-19 | 82.0 |
MS.gene84767.t1 | AT3G50530 | 90.000 | 40 | 4 | 0 | 2 | 41 | 241 | 280 | 2.01e-19 | 82.0 |
MS.gene84767.t1 | AT2G41140 | 90.000 | 40 | 4 | 0 | 2 | 41 | 216 | 255 | 6.00e-19 | 80.5 |
MS.gene84767.t1 | AT2G46700 | 85.000 | 40 | 6 | 0 | 2 | 41 | 55 | 94 | 1.59e-18 | 79.0 |
MS.gene84767.t1 | AT2G46700 | 85.000 | 40 | 6 | 0 | 2 | 41 | 55 | 94 | 1.59e-18 | 79.0 |
MS.gene84767.t1 | AT2G46700 | 85.000 | 40 | 6 | 0 | 2 | 41 | 236 | 275 | 3.37e-18 | 78.2 |
MS.gene84767.t1 | AT1G49580 | 85.000 | 40 | 6 | 0 | 2 | 41 | 243 | 282 | 4.10e-18 | 78.2 |
MS.gene84767.t1 | AT3G56760 | 85.000 | 40 | 6 | 0 | 2 | 41 | 217 | 256 | 1.61e-17 | 76.3 |
MS.gene84767.t1 | AT5G24430 | 72.500 | 40 | 11 | 0 | 2 | 41 | 236 | 275 | 1.43e-13 | 65.1 |
MS.gene84767.t1 | AT3G49370 | 70.000 | 40 | 12 | 0 | 2 | 41 | 235 | 274 | 3.09e-13 | 64.3 |
Find 18 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCCAACAGTCACGTTTGTT+GGG | 0.299044 | 6.3:+47890574 | None:intergenic |
CGCTGATTGCGACTGTTAGA+AGG | 0.331694 | 6.3:+47890525 | None:intergenic |
AACTCTTCATTTGCGACTGT+TGG | 0.374249 | 6.3:-47890668 | MS.gene84767:CDS |
CCCCAACAAACGTGACTGTT+GGG | 0.392125 | 6.3:-47890575 | MS.gene84767:CDS |
TCCCCAACAGTCACGTTTGT+TGG | 0.397482 | 6.3:+47890573 | None:intergenic |
ACTCTTCATTTGCGACTGTT+GGG | 0.448333 | 6.3:-47890667 | MS.gene84767:CDS |
GCCGCTCCAACTTCCGCAAA+AGG | 0.458907 | 6.3:+47890631 | None:intergenic |
ACCCCAACAAACGTGACTGT+TGG | 0.491561 | 6.3:-47890576 | MS.gene84767:CDS |
CCCAACAGTCACGTTTGTTG+GGG | 0.500328 | 6.3:+47890575 | None:intergenic |
GCTGATTGCGACTGTTAGAA+GGG | 0.548833 | 6.3:+47890526 | None:intergenic |
TATTTGTACCATGACAGCCT+TGG | 0.549299 | 6.3:+47891424 | None:intergenic |
AGATGATGCCAAGGCTGTCA+TGG | 0.554908 | 6.3:-47891432 | MS.gene84767:CDS |
CCCAACAAACGTGACTGTTG+GGG | 0.598159 | 6.3:-47890574 | MS.gene84767:CDS |
TGGAGCGGCTGTTCCACGAA+GGG | 0.604276 | 6.3:-47890617 | MS.gene84767:CDS |
ATACTCAGAAGATGATGCCA+AGG | 0.618920 | 6.3:-47891441 | MS.gene84767:CDS |
TTGGAGCGGCTGTTCCACGA+AGG | 0.647460 | 6.3:-47890618 | MS.gene84767:CDS |
TATTAGACATGATACTGTCA+AGG | 0.648573 | 6.3:-47894547 | None:intergenic |
GCACAGAGATCTTAAGCCTG+AGG | 0.658568 | 6.3:-47891363 | MS.gene84767:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAATATATTTATTTAAAT+TGG | - | chr6.3:47894160-47894179 | MS.gene84767:intron | 0.0% |
!!! | TAAATTTATTTTAAAAAAAA+TGG | + | chr6.3:47894341-47894360 | None:intergenic | 0.0% |
!! | AAAAAATAAAAAATTGAATG+GGG | + | chr6.3:47894198-47894217 | None:intergenic | 10.0% |
!!! | ATATTACTTAATCTAATTTT+TGG | - | chr6.3:47893985-47894004 | MS.gene84767:intron | 10.0% |
!!! | ATTAATTTTAAGTTATAACT+TGG | - | chr6.3:47892498-47892517 | MS.gene84767:intron | 10.0% |
!! | AATCATATTTAAATAGCTTA+GGG | - | chr6.3:47893796-47893815 | MS.gene84767:intron | 15.0% |
!! | ATTATTCATTTCATTTCATT+TGG | - | chr6.3:47891163-47891182 | MS.gene84767:intron | 15.0% |
!! | TAATCATATTTAAATAGCTT+AGG | - | chr6.3:47893795-47893814 | MS.gene84767:intron | 15.0% |
!! | TTATTCATTTCATTTCATTT+GGG | - | chr6.3:47891164-47891183 | MS.gene84767:intron | 15.0% |
!! | TTTGAATATTTGATGAAAAT+GGG | - | chr6.3:47891719-47891738 | MS.gene84767:intron | 15.0% |
!!! | AGAATATTTTTATCTTTCTA+AGG | - | chr6.3:47892106-47892125 | MS.gene84767:intron | 15.0% |
!!! | ATTCAACAATTTTACAAAAA+TGG | + | chr6.3:47891353-47891372 | None:intergenic | 15.0% |
!!! | GAATATTTTTATCTTTCTAA+GGG | - | chr6.3:47892107-47892126 | MS.gene84767:intron | 15.0% |
!!! | TGTTATTTGACTTTATATTT+TGG | - | chr6.3:47893348-47893367 | MS.gene84767:intron | 15.0% |
!!! | TTAAAAAAAATGGTTTTGAA+GGG | + | chr6.3:47894331-47894350 | None:intergenic | 15.0% |
!!! | TTCAACAATTTTACAAAAAT+GGG | + | chr6.3:47891352-47891371 | None:intergenic | 15.0% |
!!! | TTTAAAAAAAATGGTTTTGA+AGG | + | chr6.3:47894332-47894351 | None:intergenic | 15.0% |
!!! | TTTAAAAAAATGGTTTTGAA+GGG | + | chr6.3:47894266-47894285 | None:intergenic | 15.0% |
!!! | TTTTAAAAAAATGGTTTTGA+AGG | + | chr6.3:47894267-47894286 | None:intergenic | 15.0% |
!!! | TTTTGAATATTTGATGAAAA+TGG | - | chr6.3:47891718-47891737 | MS.gene84767:intron | 15.0% |
!! | AAAATAAAACTAGCGAAAAT+CGG | + | chr6.3:47890737-47890756 | None:intergenic | 20.0% |
!! | AAGCTCTTATTAATCTTATA+TGG | - | chr6.3:47893155-47893174 | MS.gene84767:intron | 20.0% |
!! | ATATAATCCATAAACATATC+TGG | + | chr6.3:47893434-47893453 | None:intergenic | 20.0% |
!! | CTTATCTCTTAAACATTAAT+GGG | + | chr6.3:47891083-47891102 | None:intergenic | 20.0% |
!! | GTAATATTCCTAAATATTGT+TGG | + | chr6.3:47893972-47893991 | None:intergenic | 20.0% |
!! | GTAATTGTATATATGATATG+TGG | - | chr6.3:47892662-47892681 | MS.gene84767:intron | 20.0% |
!! | TATAAGATTAATAAGAGCTT+TGG | + | chr6.3:47893155-47893174 | None:intergenic | 20.0% |
!!! | GATTCTTTGAAAAATGATAA+TGG | - | chr6.3:47892332-47892351 | MS.gene84767:intron | 20.0% |
!!! | GTTATTTTTTTTGTGTTTAG+TGG | - | chr6.3:47890926-47890945 | MS.gene84767:intron | 20.0% |
!!! | TAAAAAAAATGGTTTTGAAG+GGG | + | chr6.3:47894330-47894349 | None:intergenic | 20.0% |
!!! | TTAAAAAAATGGTTTTGAAG+GGG | + | chr6.3:47894265-47894284 | None:intergenic | 20.0% |
!!! | TTTTGTTTAGAGAATGTTTT+GGG | - | chr6.3:47891754-47891773 | MS.gene84767:intron | 20.0% |
!!! | TTTTTGTTTAGAGAATGTTT+TGG | - | chr6.3:47891753-47891772 | MS.gene84767:intron | 20.0% |
! | AAATAAAACTAGCGAAAATC+GGG | + | chr6.3:47890736-47890755 | None:intergenic | 25.0% |
! | AAGATTAAAAACATTCCACA+AGG | + | chr6.3:47892239-47892258 | None:intergenic | 25.0% |
! | AATTGATTGTGAATCCTTTA+TGG | - | chr6.3:47892557-47892576 | MS.gene84767:intron | 25.0% |
! | ACACGAATTTGAAAACAAAT+AGG | + | chr6.3:47891380-47891399 | None:intergenic | 25.0% |
! | AGAAATGTTTAGACAAACTT+TGG | - | chr6.3:47891814-47891833 | MS.gene84767:intron | 25.0% |
! | AGAGAAAAAGTTGTGAATTA+TGG | + | chr6.3:47891326-47891345 | None:intergenic | 25.0% |
! | ATTACATGTTGTGAATATTG+TGG | - | chr6.3:47893081-47893100 | MS.gene84767:intron | 25.0% |
! | ATTATTGCTAATTGTACTTG+AGG | - | chr6.3:47892957-47892976 | MS.gene84767:intron | 25.0% |
! | ATTTATCTAGTTAGTAGAGA+GGG | - | chr6.3:47890957-47890976 | MS.gene84767:intron | 25.0% |
! | CAGATATATCTATTGTAATG+AGG | - | chr6.3:47893929-47893948 | MS.gene84767:intron | 25.0% |
! | GAGTTATTATACGTTATGTT+AGG | - | chr6.3:47892581-47892600 | MS.gene84767:intron | 25.0% |
! | GATTGCATATATACAAGTAT+TGG | - | chr6.3:47892700-47892719 | MS.gene84767:intron | 25.0% |
! | GCTTATCTCTTAAACATTAA+TGG | + | chr6.3:47891084-47891103 | None:intergenic | 25.0% |
! | TAGTATATAAACTCTAGTTG+TGG | - | chr6.3:47891119-47891138 | MS.gene84767:intron | 25.0% |
! | TATTTATCTAGTTAGTAGAG+AGG | - | chr6.3:47890956-47890975 | MS.gene84767:intron | 25.0% |
! | TGAACTTGATATGATGATAT+TGG | - | chr6.3:47893045-47893064 | MS.gene84767:intron | 25.0% |
! | TTTACCGCTTAATAGAAATA+GGG | - | chr6.3:47893564-47893583 | MS.gene84767:intron | 25.0% |
!! | TTGTTAATTGTTGATTGACA+AGG | - | chr6.3:47892986-47893005 | MS.gene84767:intron | 25.0% |
!! | TTTGAGGTTGAATTAGAAAT+GGG | - | chr6.3:47891052-47891071 | MS.gene84767:intron | 25.0% |
!! | TTTGCATTTTTGTCCAAAAA+TGG | - | chr6.3:47891494-47891513 | MS.gene84767:intron | 25.0% |
!! | TTTGTTTAGAGAATGTTTTG+GGG | - | chr6.3:47891755-47891774 | MS.gene84767:intron | 25.0% |
!! | TTTTACCGCTTAATAGAAAT+AGG | - | chr6.3:47893563-47893582 | MS.gene84767:intron | 25.0% |
!!! | ACAAACTTTGGAATCAAATT+TGG | - | chr6.3:47891826-47891845 | MS.gene84767:intron | 25.0% |
!!! | ATATATACAAGTATTGGTGA+TGG | - | chr6.3:47892706-47892725 | MS.gene84767:intron | 25.0% |
!!! | ATTTTAGTCATTTTGGACTT+AGG | - | chr6.3:47890853-47890872 | MS.gene84767:intron | 25.0% |
!!! | ATTTTTGGTTTGCAAGTTAT+GGG | - | chr6.3:47892151-47892170 | MS.gene84767:intron | 25.0% |
!!! | CAAACTTTGGAATCAAATTT+GGG | - | chr6.3:47891827-47891846 | MS.gene84767:intron | 25.0% |
!!! | CTATTTTGTTATTTGGAGTT+TGG | - | chr6.3:47893381-47893400 | MS.gene84767:intron | 25.0% |
!!! | TAGCATCTATTTCTAGAATA+TGG | - | chr6.3:47893525-47893544 | MS.gene84767:intron | 25.0% |
!!! | TGTTGAGCTATTTTGTTATT+TGG | - | chr6.3:47893374-47893393 | MS.gene84767:intron | 25.0% |
!!! | TTGTTGATGATTAAAACACT+GGG | - | chr6.3:47891592-47891611 | MS.gene84767:intron | 25.0% |
!!! | TTTGACTTGAATACGATTTT+TGG | - | chr6.3:47892136-47892155 | MS.gene84767:intron | 25.0% |
!!! | TTTTAGTCATTTTGGACTTA+GGG | - | chr6.3:47890854-47890873 | MS.gene84767:intron | 25.0% |
!!! | TTTTGAGGTTGAATTAGAAA+TGG | - | chr6.3:47891051-47891070 | MS.gene84767:intron | 25.0% |
AAAAACATTCCACAAGGATT+GGG | + | chr6.3:47892233-47892252 | None:intergenic | 30.0% | |
AAACACTGGGTAATCATAAT+TGG | - | chr6.3:47891605-47891624 | MS.gene84767:intron | 30.0% | |
ACGAACTCATAAAAATCACA+AGG | + | chr6.3:47892365-47892384 | None:intergenic | 30.0% | |
ATATGTGTAAGATACACTTG+TGG | - | chr6.3:47893019-47893038 | MS.gene84767:intron | 30.0% | |
ATGATGATATTGGATGATCT+TGG | - | chr6.3:47893055-47893074 | MS.gene84767:intron | 30.0% | |
ATGATTTATTGCTTCTTCAG+AGG | - | chr6.3:47893609-47893628 | MS.gene84767:intron | 30.0% | |
ATGTTGTTGTGATGAATTGT+TGG | - | chr6.3:47891526-47891545 | MS.gene84767:intron | 30.0% | |
CATAATTGGAGAGTTTGATA+TGG | - | chr6.3:47891619-47891638 | MS.gene84767:intron | 30.0% | |
CCGGTAAAATATAACACTAA+CGG | + | chr6.3:47891014-47891033 | None:intergenic | 30.0% | |
CGTATAATAACTCTCCATAA+AGG | + | chr6.3:47892574-47892593 | None:intergenic | 30.0% | |
CGTTATGTTAGGATGATTAA+TGG | - | chr6.3:47892592-47892611 | MS.gene84767:intron | 30.0% | |
CTTTATGCATGTATGTATTG+TGG | - | chr6.3:47893488-47893507 | MS.gene84767:intron | 30.0% | |
GATGAAATTACATGCTTAAG+TGG | - | chr6.3:47891456-47891475 | MS.gene84767:intron | 30.0% | |
TAAAAACATTCCACAAGGAT+TGG | + | chr6.3:47892234-47892253 | None:intergenic | 30.0% | |
TATTCCTAAATATTGTTGGC+CGG | + | chr6.3:47893968-47893987 | None:intergenic | 30.0% | |
TCTTTCATTTGTCTTTCAGA+TGG | - | chr6.3:47893747-47893766 | MS.gene84767:intron | 30.0% | |
TGAAAAACCAATACACTAGT+GGG | + | chr6.3:47894032-47894051 | None:intergenic | 30.0% | |
TGAACATATGCATTGTAGTT+GGG | - | chr6.3:47892748-47892767 | MS.gene84767:intron | 30.0% | |
TGAAGAAGCAATAAATCATG+TGG | + | chr6.3:47893608-47893627 | None:intergenic | 30.0% | |
TGAAGATCCAGATATGTTTA+TGG | - | chr6.3:47893424-47893443 | MS.gene84767:intron | 30.0% | |
TGATTAATGGTGTGTTTATG+TGG | - | chr6.3:47892605-47892624 | MS.gene84767:intron | 30.0% | |
TGTATATATGATATGTGGTG+AGG | - | chr6.3:47892667-47892686 | MS.gene84767:intron | 30.0% | |
TTGAAAAACCAATACACTAG+TGG | + | chr6.3:47894033-47894052 | None:intergenic | 30.0% | |
TTGCATTAAGATGTGTTTGA+TGG | - | chr6.3:47892931-47892950 | MS.gene84767:intron | 30.0% | |
! | ACATCTCATATCACCATTTT+TGG | + | chr6.3:47891510-47891529 | None:intergenic | 30.0% |
! | CCGTTAGTGTTATATTTTAC+CGG | - | chr6.3:47891011-47891030 | MS.gene84767:intron | 30.0% |
! | TGTGATTTTTATGAGTTCGT+TGG | - | chr6.3:47892365-47892384 | MS.gene84767:intron | 30.0% |
! | TTTGTCTCTGTGTGTATTTT+TGG | - | chr6.3:47890798-47890817 | MS.gene84767:intron | 30.0% |
! | TTTTATGAGTTCGTTGGATT+TGG | - | chr6.3:47892371-47892390 | MS.gene84767:intron | 30.0% |
!! | AACACCCTATTTCTATTAAG+CGG | + | chr6.3:47893571-47893590 | None:intergenic | 30.0% |
!! | ATATACTAGCTCTACTCAAT+TGG | + | chr6.3:47891107-47891126 | None:intergenic | 30.0% |
!! | GTTGTTGATGATTAAAACAC+TGG | - | chr6.3:47891591-47891610 | MS.gene84767:intron | 30.0% |
!! | TATACTAGCTCTACTCAATT+GGG | + | chr6.3:47891106-47891125 | None:intergenic | 30.0% |
!! | TTTAGTCATTTTGGACTTAG+GGG | - | chr6.3:47890855-47890874 | MS.gene84767:intron | 30.0% |
!! | TTTTATCTTTCTAAGGGTGT+TGG | - | chr6.3:47892113-47892132 | MS.gene84767:intron | 30.0% |
!!! | AGTTTTCACTTGGTTTTGAA+GGG | + | chr6.3:47894395-47894414 | None:intergenic | 30.0% |
!!! | GAAGGGTATTTTAGTCATTT+TGG | - | chr6.3:47890846-47890865 | MS.gene84767:intron | 30.0% |
!!! | GATTTTTGGTTTGCAAGTTA+TGG | - | chr6.3:47892150-47892169 | MS.gene84767:intron | 30.0% |
!!! | GTTTTGGGGCAAATTTTATA+TGG | - | chr6.3:47891769-47891788 | MS.gene84767:intron | 30.0% |
!!! | TTTTTGGTTTGCAAGTTATG+GGG | - | chr6.3:47892152-47892171 | MS.gene84767:intron | 30.0% |
AAAGTTTCAGTCTGTTGTTG+AGG | - | chr6.3:47893855-47893874 | MS.gene84767:intron | 35.0% | |
AAATGTTACTGCTCACTTAC+CGG | + | chr6.3:47891033-47891052 | None:intergenic | 35.0% | |
AACTTAACATTTGCGACTGT+TGG | - | chr6.3:47894225-47894244 | MS.gene84767:intron | 35.0% | |
AATTCAACATTTGCGACTGT+TGG | - | chr6.3:47894290-47894309 | MS.gene84767:intron | 35.0% | |
AGAGACATTGCATAAACTGT+TGG | - | chr6.3:47892899-47892918 | MS.gene84767:intron | 35.0% | |
AGGATACGTAAGCATTTCAT+CGG | + | chr6.3:47892397-47892416 | None:intergenic | 35.0% | |
ATGATTACCCACTAGTGTAT+TGG | - | chr6.3:47894022-47894041 | MS.gene84767:intron | 35.0% | |
ATTTATTGCTTCTTCAGAGG+AGG | - | chr6.3:47893612-47893631 | MS.gene84767:intron | 35.0% | |
CGTAGAATTCGGTATTAGAA+GGG | - | chr6.3:47890829-47890848 | MS.gene84767:intron | 35.0% | |
GAAATTACATGCTTAAGTGG+TGG | - | chr6.3:47891459-47891478 | MS.gene84767:intron | 35.0% | |
GTGAACATATGCATTGTAGT+TGG | - | chr6.3:47892747-47892766 | MS.gene84767:intron | 35.0% | |
TAAATCATGTGGCTAGTAAG+TGG | + | chr6.3:47893597-47893616 | None:intergenic | 35.0% | |
TAGACACTTGCATGAAAAAG+AGG | + | chr6.3:47893293-47893312 | None:intergenic | 35.0% | |
TAGGAGCAAAATTGAAGCTT+GGG | - | chr6.3:47891258-47891277 | MS.gene84767:intron | 35.0% | |
TCAACAACAGACTGAAACTT+TGG | + | chr6.3:47893856-47893875 | None:intergenic | 35.0% | |
TCATGCAAGTGTCTAGATTA+GGG | - | chr6.3:47893298-47893317 | MS.gene84767:intron | 35.0% | |
TCGTAGAATTCGGTATTAGA+AGG | - | chr6.3:47890828-47890847 | MS.gene84767:intron | 35.0% | |
TGGAATCAAATTTGGGCATT+GGG | - | chr6.3:47891834-47891853 | MS.gene84767:intron | 35.0% | |
TTACCACATACCTTTCTGTA+TGG | - | chr6.3:47893210-47893229 | MS.gene84767:intron | 35.0% | |
TTCATGCAAGTGTCTAGATT+AGG | - | chr6.3:47893297-47893316 | MS.gene84767:intron | 35.0% | |
TTGGAATCAAATTTGGGCAT+TGG | - | chr6.3:47891833-47891852 | MS.gene84767:intron | 35.0% | |
TTTATTGCTTCTTCAGAGGA+GGG | - | chr6.3:47893613-47893632 | MS.gene84767:intron | 35.0% | |
! | AATTGTTGATTGACAAGGTG+AGG | - | chr6.3:47892991-47893010 | MS.gene84767:intron | 35.0% |
! | ACTTCATGTTGCGTGAATTT+TGG | - | chr6.3:47892630-47892649 | MS.gene84767:intron | 35.0% |
! | AGTGAGCAGTAACATTTTTG+AGG | - | chr6.3:47891036-47891055 | MS.gene84767:intron | 35.0% |
! | GCAAATGAAGAGTTTTCACT+TGG | + | chr6.3:47894405-47894424 | None:intergenic | 35.0% |
! | GGTTGAATTAGAAATGGGTT+AGG | - | chr6.3:47891057-47891076 | MS.gene84767:intron | 35.0% |
! | GTTGCATTTTGTCATCTTCA+GGG | - | chr6.3:47893687-47893706 | MS.gene84767:intron | 35.0% |
! | TGAAACTTTGGTGTAAGCAT+AGG | + | chr6.3:47893844-47893863 | None:intergenic | 35.0% |
! | TGTTGCATTTTGTCATCTTC+AGG | - | chr6.3:47893686-47893705 | MS.gene84767:intron | 35.0% |
! | TTTTCCGGCCAACAATATTT+AGG | - | chr6.3:47893961-47893980 | MS.gene84767:intron | 35.0% |
!! | AGGCGAACTTACTCATTTTT+GGG | - | chr6.3:47892310-47892329 | MS.gene84767:intron | 35.0% |
!! | CGATGTTTTTGTTGCATCAA+AGG | - | chr6.3:47892830-47892849 | MS.gene84767:intron | 35.0% |
!! | TTAGAGAATCTTGGTGTTAG+AGG | - | chr6.3:47891281-47891300 | MS.gene84767:intron | 35.0% |
!! | TTTTAAGAGTGCAACAGTGA+TGG | - | chr6.3:47892274-47892293 | MS.gene84767:intron | 35.0% |
!!! | CTCTGTGTGTATTTTTGGTT+GGG | - | chr6.3:47890803-47890822 | MS.gene84767:intron | 35.0% |
!!! | GAGTTTTCACTTGGTTTTGA+AGG | + | chr6.3:47894396-47894415 | None:intergenic | 35.0% |
!!! | GTTTTCACTTGGTTTTGAAG+GGG | + | chr6.3:47894394-47894413 | None:intergenic | 35.0% |
!!! | TCTCTGTGTGTATTTTTGGT+TGG | - | chr6.3:47890802-47890821 | MS.gene84767:intron | 35.0% |
AAAGAGGGGATTCAACATCT+AGG | - | chr6.3:47891239-47891258 | MS.gene84767:intron | 40.0% | |
AACATCGTAATCACCTCCAT+TGG | + | chr6.3:47892817-47892836 | None:intergenic | 40.0% | |
AACTCTTCATTTGCGACTGT+TGG | - | chr6.3:47894411-47894430 | MS.gene84767:intron | 40.0% | |
ACATACCTTTCTGTATGGAC+GGG | - | chr6.3:47893215-47893234 | MS.gene84767:intron | 40.0% | |
ACTCTTCATTTGCGACTGTT+GGG | - | chr6.3:47894412-47894431 | MS.gene84767:intron | 40.0% | |
ACTGTGAGAATACAAGGCAT+AGG | - | chr6.3:47892436-47892455 | MS.gene84767:intron | 40.0% | |
AGAGGCAACAACAACAACAA+GGG | - | chr6.3:47891207-47891226 | MS.gene84767:intron | 40.0% | |
ATACTCAGAAGATGATGCCA+AGG | - | chr6.3:47893638-47893657 | MS.gene84767:intron | 40.0% | |
ATGAAAGATATGCTCACCTC+AGG | + | chr6.3:47893735-47893754 | None:intergenic | 40.0% | |
CAACAACAACAAGGGTTAGA+AGG | - | chr6.3:47891215-47891234 | MS.gene84767:intron | 40.0% | |
CACATACCTTTCTGTATGGA+CGG | - | chr6.3:47893214-47893233 | MS.gene84767:intron | 40.0% | |
CTAGGAGCAAAATTGAAGCT+TGG | - | chr6.3:47891257-47891276 | MS.gene84767:intron | 40.0% | |
CTCTAGTTGTGGATGAAACT+AGG | - | chr6.3:47891130-47891149 | MS.gene84767:intron | 40.0% | |
GACATTGCATAAACTGTTGG+TGG | - | chr6.3:47892902-47892921 | MS.gene84767:intron | 40.0% | |
GAGATAGAGATAGAGACTAG+AGG | - | chr6.3:47891189-47891208 | MS.gene84767:intron | 40.0% | |
GTTCATGCATACATGACTGA+TGG | - | chr6.3:47892777-47892796 | MS.gene84767:intron | 40.0% | |
TAACACTAACGGTCACTCAA+CGG | + | chr6.3:47891003-47891022 | None:intergenic | 40.0% | |
TAGACTCATCTAGATGCATG+TGG | + | chr6.3:47892880-47892899 | None:intergenic | 40.0% | |
TAGAGGCAACAACAACAACA+AGG | - | chr6.3:47891206-47891225 | MS.gene84767:intron | 40.0% | |
TATTTGTACCATGACAGCCT+TGG | + | chr6.3:47893658-47893677 | None:intergenic | 40.0% | |
TGGTTGGGAATCGTAGAATT+CGG | - | chr6.3:47890818-47890837 | MS.gene84767:intron | 40.0% | |
! | AAGCTTGGGTTAGAGAATCT+TGG | - | chr6.3:47891272-47891291 | MS.gene84767:intron | 40.0% |
! | ATGAGGCTCTTCAACTTTTC+CGG | - | chr6.3:47893946-47893965 | MS.gene84767:intron | 40.0% |
! | ATTTTGTCATCTTCAGGGTG+TGG | - | chr6.3:47893692-47893711 | MS.gene84767:intron | 40.0% |
! | GAGGCGAACTTACTCATTTT+TGG | - | chr6.3:47892309-47892328 | MS.gene84767:intron | 40.0% |
! | GAGTCAAAATTGGGGTTTTG+GGG | - | chr6.3:47891857-47891876 | MS.gene84767:intron | 40.0% |
! | GCGTGAATTTTGGATGTTGT+TGG | - | chr6.3:47892640-47892659 | MS.gene84767:intron | 40.0% |
! | GGAATCAAATTTGGGCATTG+GGG | - | chr6.3:47891835-47891854 | MS.gene84767:intron | 40.0% |
! | GGAGTCAAAATTGGGGTTTT+GGG | - | chr6.3:47891856-47891875 | MS.gene84767:intron | 40.0% |
! | GGTGGATTTATATCCAATGG+AGG | - | chr6.3:47892801-47892820 | MS.gene84767:intron | 40.0% |
!! | ATCTTGGTGTTAGAGGTAAG+AGG | - | chr6.3:47891288-47891307 | MS.gene84767:intron | 40.0% |
!! | GGTGGTGGATTTATATCCAA+TGG | - | chr6.3:47892798-47892817 | MS.gene84767:intron | 40.0% |
!! | TACAAGTATTGGTGATGGTG+AGG | - | chr6.3:47892711-47892730 | MS.gene84767:intron | 40.0% |
!! | TCTTGGTGTTAGAGGTAAGA+GGG | - | chr6.3:47891289-47891308 | MS.gene84767:intron | 40.0% |
!!! | TTCAGTCGTGAACTGGTTTT+TGG | - | chr6.3:47892063-47892082 | MS.gene84767:intron | 40.0% |
!!! | TTTTGGACTTAGGGGCATTT+TGG | - | chr6.3:47890863-47890882 | MS.gene84767:intron | 40.0% |
AACATTTGCGACTGCTGTGA+AGG | - | chr6.3:47894360-47894379 | MS.gene84767:intron | 45.0% | |
AAGGCGCAAGAATGCAAAAC+AGG | + | chr6.3:47892034-47892053 | None:intergenic | 45.0% | |
AAGGGTTAGAAGGCAAAGAG+GGG | - | chr6.3:47891225-47891244 | MS.gene84767:intron | 45.0% | |
ACAAGGGTTAGAAGGCAAAG+AGG | - | chr6.3:47891223-47891242 | MS.gene84767:intron | 45.0% | |
ACATTTGCGACTGCTGTGAA+GGG | - | chr6.3:47894361-47894380 | MS.gene84767:intron | 45.0% | |
AGGCGCAAGAATGCAAAACA+GGG | + | chr6.3:47892033-47892052 | None:intergenic | 45.0% | |
AGGTATGTGGTAAACCACTG+AGG | + | chr6.3:47893203-47893222 | None:intergenic | 45.0% | |
AGTGCTTCTTGTTGATGCTG+AGG | - | chr6.3:47893259-47893278 | MS.gene84767:intron | 45.0% | |
ATCTACCCGTCCATACAGAA+AGG | + | chr6.3:47893223-47893242 | None:intergenic | 45.0% | |
CAAGGGTTAGAAGGCAAAGA+GGG | - | chr6.3:47891224-47891243 | MS.gene84767:intron | 45.0% | |
CACGATCCATGCACTTCTAT+CGG | + | chr6.3:47893899-47893918 | None:intergenic | 45.0% | |
CATGCATACATGACTGATGG+TGG | - | chr6.3:47892780-47892799 | MS.gene84767:intron | 45.0% | |
CATGTCACATCACATTGCAG+CGG | + | chr6.3:47893466-47893485 | None:intergenic | 45.0% | |
CGAGTTATGACAGTAGTCTC+GGG | + | chr6.3:47891900-47891919 | None:intergenic | 45.0% | |
GAAAATCGGGCTGTTACAAG+TGG | + | chr6.3:47890723-47890742 | None:intergenic | 45.0% | |
GATGTAATGCTAACCCTCAG+TGG | - | chr6.3:47893186-47893205 | MS.gene84767:intron | 45.0% | |
GCATGAAATAGAGCCGCTAT+CGG | - | chr6.3:47890575-47890594 | MS.gene84767:CDS | 45.0% | |
GCATTGGGGAGTCAAAATTG+GGG | - | chr6.3:47891849-47891868 | MS.gene84767:intron | 45.0% | |
GCGAGTTATGACAGTAGTCT+CGG | + | chr6.3:47891901-47891920 | None:intergenic | 45.0% | |
GGTATGTGGTAAACCACTGA+GGG | + | chr6.3:47893202-47893221 | None:intergenic | 45.0% | |
GTGATGGTTAAGCTGTGTTG+AGG | - | chr6.3:47892290-47892309 | MS.gene84767:intron | 45.0% | |
GTGTTAGAGGTAAGAGGGTT+AGG | - | chr6.3:47891294-47891313 | MS.gene84767:intron | 45.0% | |
TGTGGTACCAAAACACCTCA+AGG | + | chr6.3:47892862-47892881 | None:intergenic | 45.0% | |
TTCTTGTTGATGCTGAGGAG+TGG | - | chr6.3:47893264-47893283 | MS.gene84767:intron | 45.0% | |
TTGAAATAACGCCGCTAACG+CGG | + | chr6.3:47890669-47890688 | None:intergenic | 45.0% | |
TTTCTGTATGGACGGGTAGA+TGG | - | chr6.3:47893222-47893241 | MS.gene84767:intron | 45.0% | |
! | AACTGTCGCAACACCTTTTG+CGG | - | chr6.3:47894435-47894454 | MS.gene84767:intron | 45.0% |
! | ACATTTGCGACTGTTGGTGA+AGG | - | chr6.3:47894231-47894250 | MS.gene84767:intron | 45.0% |
! | ACGTGGACTGTGAGAATACA+AGG | - | chr6.3:47892430-47892449 | MS.gene84767:intron | 45.0% |
! | ATTAGGGCTCTGATCTAGGA+TGG | - | chr6.3:47893314-47893333 | MS.gene84767:intron | 45.0% |
! | CATTTGCGACTGTTGGTGAA+GGG | - | chr6.3:47894232-47894251 | MS.gene84767:intron | 45.0% |
! | CGTCCATACAGAAAGGTATG+TGG | + | chr6.3:47893216-47893235 | None:intergenic | 45.0% |
! | CTAGATTAGGGCTCTGATCT+AGG | - | chr6.3:47893310-47893329 | MS.gene84767:intron | 45.0% |
! | GGCATTGGGGAGTCAAAATT+GGG | - | chr6.3:47891848-47891867 | MS.gene84767:intron | 45.0% |
! | GGCTATTGAGCTGGTTTACT+TGG | - | chr6.3:47892457-47892476 | MS.gene84767:intron | 45.0% |
! | GGGAGTCAAAATTGGGGTTT+TGG | - | chr6.3:47891855-47891874 | MS.gene84767:intron | 45.0% |
!! | GGGCATTTTGGTCATTTTGC+GGG | - | chr6.3:47890875-47890894 | MS.gene84767:intron | 45.0% |
!! | GGGGCATTTTGGTCATTTTG+CGG | - | chr6.3:47890874-47890893 | MS.gene84767:intron | 45.0% |
!!! | TTGGGGTTTTGGGGTGAAAA+TGG | - | chr6.3:47891866-47891885 | MS.gene84767:intron | 45.0% |
!! | AAAAAAAATAAAAAATTGAA+TGG | + | chr6.3:47894200-47894219 | None:intergenic | 5.0% |
!! | AAAAAAATAAAAAATTGAAT+GGG | + | chr6.3:47894199-47894218 | None:intergenic | 5.0% |
!!! | TGAATTTTTTTTTAAAAAAA+TGG | + | chr6.3:47894276-47894295 | None:intergenic | 5.0% |
ACCAGTTCACGACTGAAACG+AGG | + | chr6.3:47892060-47892079 | None:intergenic | 50.0% | |
ACCCCAACAAACGTGACTGT+TGG | - | chr6.3:47894503-47894522 | MS.gene84767:intron | 50.0% | |
AGATGATGCCAAGGCTGTCA+TGG | - | chr6.3:47893647-47893666 | MS.gene84767:intron | 50.0% | |
CAAGGCATAGGCTATTGAGC+TGG | - | chr6.3:47892448-47892467 | MS.gene84767:intron | 50.0% | |
CACGACTGAAACGAGGGAAA+AGG | + | chr6.3:47892053-47892072 | None:intergenic | 50.0% | |
CATCAAAGGTGACGACCTTG+AGG | - | chr6.3:47892844-47892863 | MS.gene84767:intron | 50.0% | |
CCAGTTCACGACTGAAACGA+GGG | + | chr6.3:47892059-47892078 | None:intergenic | 50.0% | |
CCCAACAAACGTGACTGTTG+GGG | - | chr6.3:47894505-47894524 | MS.gene84767:intron | 50.0% | |
CCCCAACAAACGTGACTGTT+GGG | - | chr6.3:47894504-47894523 | MS.gene84767:intron | 50.0% | |
CCCCAACAGTCACGTTTGTT+GGG | + | chr6.3:47894508-47894527 | None:intergenic | 50.0% | |
GCACAGAGATCTTAAGCCTG+AGG | - | chr6.3:47893716-47893735 | MS.gene84767:intron | 50.0% | |
GGCGCAAGAATGCAAAACAG+GGG | + | chr6.3:47892032-47892051 | None:intergenic | 50.0% | |
GTTGAGGATAGCAGCAGATG+CGG | - | chr6.3:47893871-47893890 | MS.gene84767:intron | 50.0% | |
TCAACTCGCAACTGCGAGTA+CGG | + | chr6.3:47891926-47891945 | None:intergenic | 50.0% | |
TCCCCAACAGTCACGTTTGT+TGG | + | chr6.3:47894509-47894528 | None:intergenic | 50.0% | |
! | ACCTTTTGCGGAAGTTGGAG+CGG | - | chr6.3:47894447-47894466 | MS.gene84767:intron | 50.0% |
! | CCCAACAGTCACGTTTGTTG+GGG | + | chr6.3:47894507-47894526 | None:intergenic | 50.0% |
! | GCAACACCTTTTGCGGAAGT+TGG | - | chr6.3:47894442-47894461 | MS.gene84767:intron | 50.0% |
!! | GCATACATGACTGATGGTGG+TGG | - | chr6.3:47892783-47892802 | MS.gene84767:intron | 50.0% |
!! | GGGCATTGGGGAGTCAAAAT+TGG | - | chr6.3:47891847-47891866 | MS.gene84767:intron | 50.0% |
!! | GTGACGACCTTGAGGTGTTT+TGG | - | chr6.3:47892852-47892871 | MS.gene84767:intron | 50.0% |
!! | TCGACTTGGAACGAGTTACG+CGG | + | chr6.3:47892210-47892229 | None:intergenic | 50.0% |
!! | TTTGGTCATTTTGCGGGCAG+TGG | - | chr6.3:47890881-47890900 | MS.gene84767:intron | 50.0% |
ATGGTCGCTGCTCACTTCTG+GGG | + | chr6.3:47890641-47890660 | None:intergenic | 55.0% | |
CCAAGTCGACCCAATCCTTG+TGG | - | chr6.3:47892221-47892240 | MS.gene84767:intron | 55.0% | |
CCACAAGGATTGGGTCGACT+TGG | + | chr6.3:47892224-47892243 | None:intergenic | 55.0% | |
CCCTCGTTTCAGTCGTGAAC+TGG | - | chr6.3:47892056-47892075 | MS.gene84767:intron | 55.0% | |
GACCATCATAGCCGCGTTAG+CGG | - | chr6.3:47890655-47890674 | MS.gene84767:CDS | 55.0% | |
GAGTTGAATGCGAGCAGGAG+TGG | - | chr6.3:47891939-47891958 | MS.gene84767:intron | 55.0% | |
GATGGTCGCTGCTCACTTCT+GGG | + | chr6.3:47890642-47890661 | None:intergenic | 55.0% | |
GCTACTCGCAGATGCGAGTA+AGG | - | chr6.3:47891972-47891991 | MS.gene84767:intron | 55.0% | |
TCCACGTGTGTGTGCAGTAG+AGG | + | chr6.3:47892417-47892436 | None:intergenic | 55.0% | |
TCCTCTACTGCACACACACG+TGG | - | chr6.3:47892413-47892432 | MS.gene84767:intron | 55.0% | |
TCGGGCTGTTACAAGTGGCA+AGG | + | chr6.3:47890718-47890737 | None:intergenic | 55.0% | |
TGATGGTCGCTGCTCACTTC+TGG | + | chr6.3:47890643-47890662 | None:intergenic | 55.0% | |
! | CGACTTGGAACGAGTTACGC+GGG | + | chr6.3:47892209-47892228 | None:intergenic | 55.0% |
! | CTGTCTTTTGCGACCCTTCG+TGG | + | chr6.3:47894478-47894497 | None:intergenic | 55.0% |
! | GTTGCGAGTTGAATGCGAGC+AGG | - | chr6.3:47891934-47891953 | MS.gene84767:intron | 55.0% |
!! | GCGGTACCGATAGAAGTGCA+TGG | - | chr6.3:47893890-47893909 | MS.gene84767:intron | 55.0% |
!! | TGCTCACTTCTGGGGTGAGA+CGG | + | chr6.3:47890633-47890652 | None:intergenic | 55.0% |
CTCGCAGTTGCGAGTTGCAC+AGG | - | chr6.3:47891998-47892017 | MS.gene84767:intron | 60.0% | |
GCCGCTCCAACTTCCGCAAA+AGG | + | chr6.3:47894451-47894470 | None:intergenic | 60.0% | |
TGGACGGGTAGATGGAGTGC+AGG | - | chr6.3:47893230-47893249 | MS.gene84767:intron | 60.0% | |
TGGAGCGGCTGTTCCACGAA+GGG | - | chr6.3:47894462-47894481 | MS.gene84767:intron | 60.0% | |
TGGGGTGAGACGGTGCATGT+GGG | + | chr6.3:47890623-47890642 | None:intergenic | 60.0% | |
TTGGAGCGGCTGTTCCACGA+AGG | - | chr6.3:47894461-47894480 | MS.gene84767:intron | 60.0% | |
CATGTGGGGGAGGTCACCCA+CGG | + | chr6.3:47890608-47890627 | None:intergenic | 65.0% | |
CGCATCTGCGAGTAGCCTCC+AGG | + | chr6.3:47891968-47891987 | None:intergenic | 65.0% | |
CGCCGCTAACGCGGCTATGA+TGG | + | chr6.3:47890660-47890679 | None:intergenic | 65.0% | |
CTGGGGTGAGACGGTGCATG+TGG | + | chr6.3:47890624-47890643 | None:intergenic | 65.0% | |
GAGCAGGAGTGGCTTCCTGG+AGG | - | chr6.3:47891950-47891969 | MS.gene84767:intron | 65.0% | |
GGGGTGAGACGGTGCATGTG+GGG | + | chr6.3:47890622-47890641 | None:intergenic | 65.0% | |
GGGTGAGACGGTGCATGTGG+GGG | + | chr6.3:47890621-47890640 | None:intergenic | 65.0% | |
TGAGACGGTGCATGTGGGGG+AGG | + | chr6.3:47890618-47890637 | None:intergenic | 65.0% | |
TGCGAGCAGGAGTGGCTTCC+TGG | - | chr6.3:47891947-47891966 | MS.gene84767:intron | 65.0% | |
CGCTATCGGCGCAGTGCCGT+GGG | - | chr6.3:47890589-47890608 | MS.gene84767:CDS | 70.0% | |
! | CCACGGCACTGCGCCGATAG+CGG | + | chr6.3:47890591-47890610 | None:intergenic | 70.0% |
CCGCTATCGGCGCAGTGCCG+TGG | - | chr6.3:47890588-47890607 | MS.gene84767:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 47890540 | 47894561 | 47890540 | ID=MS.gene84767 |
chr6.3 | mRNA | 47890540 | 47894561 | 47890540 | ID=MS.gene84767.t1;Parent=MS.gene84767 |
chr6.3 | exon | 47894548 | 47894561 | 47894548 | ID=MS.gene84767.t1.exon1;Parent=MS.gene84767.t1 |
chr6.3 | CDS | 47894548 | 47894561 | 47894548 | ID=cds.MS.gene84767.t1;Parent=MS.gene84767.t1 |
chr6.3 | exon | 47891364 | 47891472 | 47891364 | ID=MS.gene84767.t1.exon2;Parent=MS.gene84767.t1 |
chr6.3 | CDS | 47891364 | 47891472 | 47891364 | ID=cds.MS.gene84767.t1;Parent=MS.gene84767.t1 |
chr6.3 | exon | 47890540 | 47890719 | 47890540 | ID=MS.gene84767.t1.exon3;Parent=MS.gene84767.t1 |
chr6.3 | CDS | 47890540 | 47890719 | 47890540 | ID=cds.MS.gene84767.t1;Parent=MS.gene84767.t1 |
Gene Sequence |
Protein sequence |