Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84839.t1 | XP_003627563.2 | 99.6 | 512 | 2 | 0 | 1 | 512 | 481 | 992 | 2.60E-274 | 954.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84839.t1 | Q6EVK6 | 67.4 | 512 | 158 | 5 | 1 | 512 | 484 | 986 | 6.4e-173 | 608.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84839.t1 | G7LBQ1 | 99.6 | 512 | 2 | 0 | 1 | 512 | 481 | 992 | 1.9e-274 | 954.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056302 | MS.gene84839 | 0.802241 | 6.16E-49 | -1.69E-46 |
| MS.gene060347 | MS.gene84839 | 0.882313 | 1.16E-70 | -1.69E-46 |
| MS.gene060349 | MS.gene84839 | 0.885582 | 7.18E-72 | -1.69E-46 |
| MS.gene060350 | MS.gene84839 | 0.862354 | 5.38E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84839.t1 | MTR_8g030550 | 99.609 | 512 | 2 | 0 | 1 | 512 | 481 | 992 | 0.0 | 1048 |
| MS.gene84839.t1 | MTR_8g030550 | 99.609 | 512 | 2 | 0 | 1 | 512 | 481 | 992 | 0.0 | 1048 |
| MS.gene84839.t1 | MTR_8g030550 | 99.609 | 512 | 2 | 0 | 1 | 512 | 481 | 992 | 0.0 | 1047 |
| MS.gene84839.t1 | MTR_7g078090 | 75.292 | 514 | 118 | 4 | 1 | 512 | 493 | 999 | 0.0 | 738 |
| MS.gene84839.t1 | MTR_4g118720 | 28.319 | 226 | 125 | 7 | 295 | 512 | 814 | 1010 | 3.02e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84839.t1 | AT2G46020 | 67.383 | 512 | 158 | 5 | 1 | 512 | 484 | 986 | 0.0 | 650 |
| MS.gene84839.t1 | AT2G46020 | 67.383 | 512 | 158 | 5 | 1 | 512 | 484 | 986 | 0.0 | 650 |
| MS.gene84839.t1 | AT2G46020 | 67.383 | 512 | 158 | 5 | 1 | 512 | 484 | 986 | 0.0 | 650 |
| MS.gene84839.t1 | AT2G46020 | 67.383 | 512 | 158 | 5 | 1 | 512 | 484 | 986 | 0.0 | 650 |
| MS.gene84839.t1 | AT2G46020 | 67.383 | 512 | 158 | 5 | 1 | 512 | 484 | 986 | 0.0 | 650 |
| MS.gene84839.t1 | AT2G46020 | 67.383 | 512 | 158 | 5 | 1 | 512 | 484 | 986 | 0.0 | 650 |
Find 117 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCTATTCCTGCCGTTAA+TGG | 0.196039 | 8.1:+72471520 | MS.gene84839:CDS |
| TCAATGTTCCAGCTCGTAAT+AGG | 0.214844 | 8.1:-72473208 | None:intergenic |
| AAAGAAGATTGAAGGTTTAC+TGG | 0.241710 | 8.1:+72472041 | MS.gene84839:CDS |
| ACTAGGAAACATGACTCTTT+TGG | 0.245803 | 8.1:+72471907 | MS.gene84839:CDS |
| AGGTTTACTGGCTGTAAATT+TGG | 0.246836 | 8.1:+72472053 | MS.gene84839:CDS |
| TGCGGATGCTGCACGGTTGC+AGG | 0.248464 | 8.1:+72472662 | MS.gene84839:CDS |
| AGGAATAGATTGTGATTCTT+TGG | 0.280228 | 8.1:-72471509 | None:intergenic |
| CCATGTTCACTGTCCTGCTT+TGG | 0.303789 | 8.1:-72471700 | None:intergenic |
| GAAGAGTATCTACATAAATT+AGG | 0.304995 | 8.1:+72472582 | MS.gene84839:CDS |
| GCAGATTCCTTTGACATAGA+TGG | 0.329647 | 8.1:-72471622 | None:intergenic |
| ACAATGATGTTGACAGATAT+AGG | 0.337249 | 8.1:+72472475 | MS.gene84839:CDS |
| ATTTGGAGAGGAAACGAATT+AGG | 0.337807 | 8.1:+72472070 | MS.gene84839:CDS |
| AACTCAAATCTATATTTCTA+TGG | 0.339227 | 8.1:+72472304 | MS.gene84839:CDS |
| AACTTACGATATGGCCTATC+AGG | 0.340770 | 8.1:-72472204 | None:intergenic |
| ATGCCCGTACTGCTCGCAAC+AGG | 0.347417 | 8.1:+72472364 | MS.gene84839:CDS |
| GTGATAGCTTGAAGAAGTTC+TGG | 0.354744 | 8.1:-72471370 | None:intergenic |
| TACAGAACTGTGTCCATTAA+CGG | 0.364292 | 8.1:-72471533 | None:intergenic |
| TGAAGAAAGGAAAATCAAAC+AGG | 0.387907 | 8.1:-72471885 | None:intergenic |
| GTCTTTCTGAAGAAGAAGTC+AGG | 0.389961 | 8.1:+72472862 | MS.gene84839:CDS |
| AGCCTAACAAACTTACGATA+TGG | 0.394999 | 8.1:-72472213 | None:intergenic |
| GGAGCAGCAGACTAGCATTC+CGG | 0.395107 | 8.1:+72472509 | MS.gene84839:CDS |
| TGTCCTCCCGTAGGCTGGTT+TGG | 0.399006 | 8.1:-72471424 | None:intergenic |
| CGATTTCTCCTCTCTTGAAA+AGG | 0.401467 | 8.1:-72471566 | None:intergenic |
| CAATGTTCCAGCTCGTAATA+GGG | 0.402012 | 8.1:-72473207 | None:intergenic |
| TCAACAGCAACAAGAGATAA+TGG | 0.403242 | 8.1:+72472176 | MS.gene84839:CDS |
| CAGATATAGGGAGATGTTGC+TGG | 0.405041 | 8.1:+72472488 | MS.gene84839:CDS |
| GGCCATATCGTAAGTTTGTT+AGG | 0.405651 | 8.1:+72472211 | MS.gene84839:CDS |
| CTGGCTGGTCCCACATCCTT+CGG | 0.406923 | 8.1:-72471847 | None:intergenic |
| CCGGAGAGGAAGTGATGATT+AGG | 0.409531 | 8.1:+72472901 | MS.gene84839:CDS |
| AAGGAAGAGCAGAAAACAAT+TGG | 0.410314 | 8.1:+72471664 | MS.gene84839:CDS |
| GAAAATTTAAAGAAGATTGA+AGG | 0.413049 | 8.1:+72472033 | MS.gene84839:CDS |
| GAAATGAGTCGGCATTAGAT+AGG | 0.417995 | 8.1:+72471743 | MS.gene84839:CDS |
| AGATAATGGCAATGCCTGAT+AGG | 0.420128 | 8.1:+72472190 | MS.gene84839:CDS |
| GAGCAGCAGACTAGCATTCC+GGG | 0.422011 | 8.1:+72472510 | MS.gene84839:CDS |
| TATGTAGATACTCTTCAGTC+TGG | 0.431556 | 8.1:-72472575 | None:intergenic |
| AGATGTTCAGGCACGTTTGA+GGG | 0.433235 | 8.1:+72472143 | MS.gene84839:CDS |
| CAATGATGTTGACAGATATA+GGG | 0.437320 | 8.1:+72472476 | MS.gene84839:CDS |
| AACGTGCCTGAACATCTAAA+AGG | 0.446897 | 8.1:-72472137 | None:intergenic |
| AATGCCGACTCATTTCTAAC+AGG | 0.447904 | 8.1:-72471736 | None:intergenic |
| GCCTGCACCTCAAGAGGCGG+TGG | 0.448710 | 8.1:-72471394 | None:intergenic |
| CAAAATCAAGTCAGATCTGC+TGG | 0.451551 | 8.1:+72471445 | MS.gene84839:CDS |
| AGGGCTGCTGCTGCTTGTGC+CGG | 0.458998 | 8.1:+72472882 | MS.gene84839:CDS |
| TGAAGTCTCAACACAAGATC+AGG | 0.469566 | 8.1:-72472093 | None:intergenic |
| TCCACCGCCTCTTGAGGTGC+AGG | 0.472694 | 8.1:+72471393 | MS.gene84839:CDS |
| AGATTGTGATTCTTTGGCAT+TGG | 0.474686 | 8.1:-72471503 | None:intergenic |
| GAAACAGTGGTTGCTTGTGC+AGG | 0.475907 | 8.1:-72471820 | None:intergenic |
| TGTTTCTCAGCCGAAGGATG+TGG | 0.482125 | 8.1:+72471837 | MS.gene84839:CDS |
| CGCACATGCAGTGAATGAAA+TGG | 0.486137 | 8.1:+72473169 | MS.gene84839:CDS |
| AAATGAGTCGGCATTAGATA+GGG | 0.492238 | 8.1:+72471744 | MS.gene84839:CDS |
| TTCAACATCATCTGCGGGAA+AGG | 0.494303 | 8.1:+72471645 | MS.gene84839:CDS |
| CCCGTACTGCTCGCAACAGG+GGG | 0.495772 | 8.1:+72472367 | MS.gene84839:CDS |
| GTTATTTGATAGAAAGGAGA+AGG | 0.495869 | 8.1:+72471337 | None:intergenic |
| TAGATGTTCAGGCACGTTTG+AGG | 0.507684 | 8.1:+72472142 | MS.gene84839:CDS |
| TGGACACAGTTCTGTAAAGC+AGG | 0.509044 | 8.1:+72471540 | MS.gene84839:CDS |
| CCAAAGCAGGACAGTGAACA+TGG | 0.512860 | 8.1:+72471700 | MS.gene84839:CDS |
| GTCCTGCTTTGGCTTAAAAG+AGG | 0.516074 | 8.1:-72471689 | None:intergenic |
| TGCCCGTACTGCTCGCAACA+GGG | 0.520777 | 8.1:+72472365 | MS.gene84839:CDS |
| AAGCAGCTGCGGATGCTGCA+CGG | 0.522912 | 8.1:+72472655 | MS.gene84839:CDS |
| CCTAATCATCACTTCCTCTC+CGG | 0.524612 | 8.1:-72472901 | None:intergenic |
| CAACAACAACAATTTATCAC+TGG | 0.530900 | 8.1:+72471948 | MS.gene84839:CDS |
| GCCCGTACTGCTCGCAACAG+GGG | 0.534723 | 8.1:+72472366 | MS.gene84839:CDS |
| AGAACAACCAAACCAGCCTA+CGG | 0.535481 | 8.1:+72471417 | MS.gene84839:CDS |
| TGTTCTGCCTGCACCTCAAG+AGG | 0.539078 | 8.1:-72471400 | None:intergenic |
| ACATAGATGGCATAACAGCT+TGG | 0.540305 | 8.1:-72471609 | None:intergenic |
| AGAAACTTCTTGAGGCACAC+TGG | 0.542348 | 8.1:+72472331 | MS.gene84839:CDS |
| AAAGATCTTCTTTCTGAGGA+AGG | 0.543001 | 8.1:+72471982 | MS.gene84839:CDS |
| GGAACTTGTAAGACAAGTGC+AGG | 0.543292 | 8.1:+72472254 | MS.gene84839:CDS |
| GGGAAAGGCTATTGCACCAC+AGG | 0.543623 | 8.1:+72471765 | MS.gene84839:CDS |
| GAAACTTCTTGAGGCACACT+GGG | 0.544904 | 8.1:+72472332 | MS.gene84839:CDS |
| GAACAACCAAACCAGCCTAC+GGG | 0.548336 | 8.1:+72471418 | MS.gene84839:CDS |
| ATAACAGCTTGGATATGAAC+TGG | 0.548737 | 8.1:-72471598 | None:intergenic |
| GCTGTGTGAACGTCAGCGTA+TGG | 0.548927 | 8.1:+72472233 | MS.gene84839:CDS |
| TCATGTTTCCTAGTGAAGAA+AGG | 0.551380 | 8.1:-72471898 | None:intergenic |
| TCTGCTTCAACATCATCTGC+GGG | 0.552934 | 8.1:+72471640 | MS.gene84839:CDS |
| TACTGGCTGTAAATTTGGAG+AGG | 0.557053 | 8.1:+72472058 | MS.gene84839:CDS |
| TGCTGCTGCTTGTGCCGGAG+AGG | 0.562766 | 8.1:+72472887 | MS.gene84839:CDS |
| TTGACGGATGAACTGTCTCT+AGG | 0.569365 | 8.1:-72472948 | None:intergenic |
| TATCACTCCACCGCCTCTTG+AGG | 0.571029 | 8.1:+72471387 | MS.gene84839:CDS |
| TATCTCTCTGCAGCATCACC+CGG | 0.574204 | 8.1:-72472528 | None:intergenic |
| TGTCAAAGATCTTCTTTCTG+AGG | 0.576338 | 8.1:+72471978 | MS.gene84839:CDS |
| ATATCATGAGAGGATGTTGA+GGG | 0.577857 | 8.1:+72472398 | MS.gene84839:CDS |
| TGTTATGCCATCTATGTCAA+AGG | 0.578263 | 8.1:+72471615 | MS.gene84839:CDS |
| ATCTGCTTCAACATCATCTG+CGG | 0.581145 | 8.1:+72471639 | MS.gene84839:CDS |
| TCTGCCTGCACCTCAAGAGG+CGG | 0.586427 | 8.1:-72471397 | None:intergenic |
| AACCACTGTTTCTCAGCCGA+AGG | 0.586705 | 8.1:+72471831 | MS.gene84839:CDS |
| GTTTCTCAGCCGAAGGATGT+GGG | 0.592990 | 8.1:+72471838 | MS.gene84839:CDS |
| CAACCATCCCTATTACGAGC+TGG | 0.597783 | 8.1:+72473200 | MS.gene84839:CDS |
| AAATCAACAGGAAGTAGAGG+AGG | 0.597876 | 8.1:+72472626 | MS.gene84839:CDS |
| GGCGTCTCAGAAAGCTGCAA+GGG | 0.599846 | 8.1:+72472275 | MS.gene84839:CDS |
| GCTTGGATATGAACTGGTGG+TGG | 0.600653 | 8.1:-72471592 | None:intergenic |
| GGAGGCAGCAAAAGCAGCTG+CGG | 0.600888 | 8.1:+72472644 | MS.gene84839:CDS |
| AATATCATGAGAGGATGTTG+AGG | 0.602609 | 8.1:+72472397 | MS.gene84839:CDS |
| TCTTTCTGAAGAAGAAGTCA+GGG | 0.608858 | 8.1:+72472863 | MS.gene84839:CDS |
| TACTCCTGTTAGAAATGAGT+CGG | 0.609834 | 8.1:+72471732 | MS.gene84839:CDS |
| TTTCATTCACTGCATGTGCG+AGG | 0.613575 | 8.1:-72473166 | None:intergenic |
| TTGCATTGTGTCAGATACAG+AGG | 0.616329 | 8.1:-72471788 | None:intergenic |
| AATGAGTCGGCATTAGATAG+GGG | 0.619648 | 8.1:+72471745 | MS.gene84839:CDS |
| AAGATGACGACAGAAGCAAA+AGG | 0.625349 | 8.1:+72472436 | MS.gene84839:CDS |
| ATAGCTTGAAGAAGTTCTGG+AGG | 0.629227 | 8.1:-72471367 | None:intergenic |
| GAACTGTGTCCATTAACGGC+AGG | 0.630916 | 8.1:-72471529 | None:intergenic |
| CAACCAAACCAGCCTACGGG+AGG | 0.632452 | 8.1:+72471421 | MS.gene84839:CDS |
| GTTCCAGCTCGTAATAGGGA+TGG | 0.634643 | 8.1:-72473203 | None:intergenic |
| ATCCTTCGGCTGAGAAACAG+TGG | 0.635124 | 8.1:-72471833 | None:intergenic |
| AGGCGTCTCAGAAAGCTGCA+AGG | 0.638704 | 8.1:+72472274 | MS.gene84839:CDS |
| AGAACAACCACGGCATGTTG+AGG | 0.644940 | 8.1:+72471480 | MS.gene84839:CDS |
| GAAGAAAGGAAAATCAAACA+GGG | 0.647097 | 8.1:-72471884 | None:intergenic |
| ATGGCGTAAGAAACTTCTTG+AGG | 0.650602 | 8.1:+72472323 | MS.gene84839:CDS |
| GTCGGCATTAGATAGGGGAA+AGG | 0.651874 | 8.1:+72471750 | MS.gene84839:CDS |
| GGGTGGGTAAATATCATGAG+AGG | 0.675920 | 8.1:+72472388 | MS.gene84839:CDS |
| GCATTGGCCTCAACATGCCG+TGG | 0.684126 | 8.1:-72471487 | None:intergenic |
| GGACCAGCCAGAAAATATCA+CGG | 0.695183 | 8.1:+72471859 | MS.gene84839:CDS |
| GTGCCTGAACATCTAAAAGG+CGG | 0.696456 | 8.1:-72472134 | None:intergenic |
| ATATTGCTGCAGAACAACCA+CGG | 0.697227 | 8.1:+72471470 | MS.gene84839:CDS |
| CCGTACTGCTCGCAACAGGG+GGG | 0.713270 | 8.1:+72472368 | MS.gene84839:CDS |
| GTGTCAGATACAGAGGCCTG+TGG | 0.723110 | 8.1:-72471781 | None:intergenic |
| AAGAAAGGAAAATCAAACAG+GGG | 0.728208 | 8.1:-72471883 | None:intergenic |
| ACAGCTTGGATATGAACTGG+TGG | 0.744956 | 8.1:-72471595 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAATTTGTATAGAAAATAT+TGG | - | chr8.1:72472743-72472762 | None:intergenic | 15.0% |
| !! | AATCAAGATATACAAACATA+TGG | - | chr8.1:72472999-72473018 | None:intergenic | 20.0% |
| !! | GAAAATTTAAAGAAGATTGA+AGG | + | chr8.1:72472033-72472052 | MS.gene84839:CDS | 20.0% |
| !! | GTAATTGTAATGAAATTCAT+TGG | + | chr8.1:72473051-72473070 | MS.gene84839:intron | 20.0% |
| !!! | AACTCAAATCTATATTTCTA+TGG | + | chr8.1:72472304-72472323 | MS.gene84839:CDS | 20.0% |
| !!! | ATTAATTGTTTTTGACCAAA+GGG | + | chr8.1:72472840-72472859 | MS.gene84839:intron | 20.0% |
| !!! | TTCTATACAAATTAGTTTTG+AGG | + | chr8.1:72472748-72472767 | MS.gene84839:intron | 20.0% |
| !!! | CATTAATTGTTTTTGACCAA+AGG | + | chr8.1:72472839-72472858 | MS.gene84839:intron | 25.0% |
| !!! | GAAGAGTATCTACATAAATT+AGG | + | chr8.1:72472582-72472601 | MS.gene84839:CDS | 25.0% |
| !!! | GTCAACATCATTGTTTTTTA+AGG | - | chr8.1:72472469-72472488 | None:intergenic | 25.0% |
| AAAGAAGATTGAAGGTTTAC+TGG | + | chr8.1:72472041-72472060 | MS.gene84839:CDS | 30.0% | |
| AAGAAAGGAAAATCAAACAG+GGG | - | chr8.1:72471886-72471905 | None:intergenic | 30.0% | |
| ACAATGATGTTGACAGATAT+AGG | + | chr8.1:72472475-72472494 | MS.gene84839:CDS | 30.0% | |
| AGGAATAGATTGTGATTCTT+TGG | - | chr8.1:72471512-72471531 | None:intergenic | 30.0% | |
| CAACAACAACAATTTATCAC+TGG | + | chr8.1:72471948-72471967 | MS.gene84839:CDS | 30.0% | |
| CAATGATGTTGACAGATATA+GGG | + | chr8.1:72472476-72472495 | MS.gene84839:CDS | 30.0% | |
| GAAGAAAGGAAAATCAAACA+GGG | - | chr8.1:72471887-72471906 | None:intergenic | 30.0% | |
| TGAAGAAAGGAAAATCAAAC+AGG | - | chr8.1:72471888-72471907 | None:intergenic | 30.0% | |
| ! | AACAAAAACTCACTTGTTGA+CGG | - | chr8.1:72472967-72472986 | None:intergenic | 30.0% |
| ! | CTGAAGTACTTAACAAAAAG+CGG | + | chr8.1:72472007-72472026 | MS.gene84839:CDS | 30.0% |
| ! | TTGATTTTCCTTTCTTCACT+AGG | + | chr8.1:72471890-72471909 | MS.gene84839:CDS | 30.0% |
| !! | AAGTTAATTTGCTTCTTTCC+AGG | + | chr8.1:72473135-72473154 | MS.gene84839:intron | 30.0% |
| !! | CTATATGAACTAGTTCTGTA+AGG | + | chr8.1:72472797-72472816 | MS.gene84839:intron | 30.0% |
| !! | TTTTGAGGATCTGATTTTGA+TGG | + | chr8.1:72472763-72472782 | MS.gene84839:intron | 30.0% |
| AAATGAGTCGGCATTAGATA+GGG | + | chr8.1:72471744-72471763 | MS.gene84839:CDS | 35.0% | |
| AAGGAAGAGCAGAAAACAAT+TGG | + | chr8.1:72471664-72471683 | MS.gene84839:CDS | 35.0% | |
| AATATCATGAGAGGATGTTG+AGG | + | chr8.1:72472397-72472416 | MS.gene84839:CDS | 35.0% | |
| ACACAAAAATGCATGAGCAA+CGG | + | chr8.1:72473027-72473046 | MS.gene84839:intron | 35.0% | |
| AGATTGTGATTCTTTGGCAT+TGG | - | chr8.1:72471506-72471525 | None:intergenic | 35.0% | |
| AGCCTAACAAACTTACGATA+TGG | - | chr8.1:72472216-72472235 | None:intergenic | 35.0% | |
| ATAACAGCTTGGATATGAAC+TGG | - | chr8.1:72471601-72471620 | None:intergenic | 35.0% | |
| ATATCATGAGAGGATGTTGA+GGG | + | chr8.1:72472398-72472417 | MS.gene84839:CDS | 35.0% | |
| ATTTGGAGAGGAAACGAATT+AGG | + | chr8.1:72472070-72472089 | MS.gene84839:CDS | 35.0% | |
| CAAAAATCAACAGGAAGTAG+AGG | + | chr8.1:72472623-72472642 | MS.gene84839:CDS | 35.0% | |
| TACAGAACTGTGTCCATTAA+CGG | - | chr8.1:72471536-72471555 | None:intergenic | 35.0% | |
| TACTCCTGTTAGAAATGAGT+CGG | + | chr8.1:72471732-72471751 | MS.gene84839:CDS | 35.0% | |
| TATGTAGATACTCTTCAGTC+TGG | - | chr8.1:72472578-72472597 | None:intergenic | 35.0% | |
| TCAACAGCAACAAGAGATAA+TGG | + | chr8.1:72472176-72472195 | MS.gene84839:CDS | 35.0% | |
| TCATGTTTCCTAGTGAAGAA+AGG | - | chr8.1:72471901-72471920 | None:intergenic | 35.0% | |
| TGTCAAAGATCTTCTTTCTG+AGG | + | chr8.1:72471978-72471997 | MS.gene84839:CDS | 35.0% | |
| TGTTATGCCATCTATGTCAA+AGG | + | chr8.1:72471615-72471634 | MS.gene84839:CDS | 35.0% | |
| ! | AAAGATCTTCTTTCTGAGGA+AGG | + | chr8.1:72471982-72472001 | MS.gene84839:CDS | 35.0% |
| ! | ACTAGGAAACATGACTCTTT+TGG | + | chr8.1:72471907-72471926 | MS.gene84839:CDS | 35.0% |
| ! | AGGTTTACTGGCTGTAAATT+TGG | + | chr8.1:72472053-72472072 | MS.gene84839:CDS | 35.0% |
| ! | CTAGGAAACATGACTCTTTT+GGG | + | chr8.1:72471908-72471927 | MS.gene84839:CDS | 35.0% |
| ! | GATGATTAGGAATCGTTTTC+TGG | + | chr8.1:72472914-72472933 | MS.gene84839:CDS | 35.0% |
| ! | TCTTTCTGAAGAAGAAGTCA+GGG | + | chr8.1:72472863-72472882 | MS.gene84839:CDS | 35.0% |
| !! | AAGACTTTTTCTCAGAACGT+TGG | - | chr8.1:72472711-72472730 | None:intergenic | 35.0% |
| !! | CTTTTCAAGAGAGGAGAAAT+CGG | + | chr8.1:72471567-72471586 | MS.gene84839:CDS | 35.0% |
| !!! | CTCTACTTCCTGTTGATTTT+TGG | - | chr8.1:72472625-72472644 | None:intergenic | 35.0% |
| AAATCAACAGGAAGTAGAGG+AGG | + | chr8.1:72472626-72472645 | MS.gene84839:CDS | 40.0% | |
| AACAGCTGCCAAAAATCAAC+AGG | + | chr8.1:72472614-72472633 | MS.gene84839:CDS | 40.0% | |
| AACGTGCCTGAACATCTAAA+AGG | - | chr8.1:72472140-72472159 | None:intergenic | 40.0% | |
| AACTTACGATATGGCCTATC+AGG | - | chr8.1:72472207-72472226 | None:intergenic | 40.0% | |
| AAGATGACGACAGAAGCAAA+AGG | + | chr8.1:72472436-72472455 | MS.gene84839:CDS | 40.0% | |
| AATGAGTCGGCATTAGATAG+GGG | + | chr8.1:72471745-72471764 | MS.gene84839:CDS | 40.0% | |
| ACATAGATGGCATAACAGCT+TGG | - | chr8.1:72471612-72471631 | None:intergenic | 40.0% | |
| ATATTGCTGCAGAACAACCA+CGG | + | chr8.1:72471470-72471489 | MS.gene84839:CDS | 40.0% | |
| ATCTGCTTCAACATCATCTG+CGG | + | chr8.1:72471639-72471658 | MS.gene84839:CDS | 40.0% | |
| ATGGCGTAAGAAACTTCTTG+AGG | + | chr8.1:72472323-72472342 | MS.gene84839:CDS | 40.0% | |
| CAAAATCAAGTCAGATCTGC+TGG | + | chr8.1:72471445-72471464 | MS.gene84839:CDS | 40.0% | |
| CAATCTATTCCTGCCGTTAA+TGG | + | chr8.1:72471520-72471539 | MS.gene84839:CDS | 40.0% | |
| CAATGTTCCAGCTCGTAATA+GGG | - | chr8.1:72473210-72473229 | None:intergenic | 40.0% | |
| CGATTTCTCCTCTCTTGAAA+AGG | - | chr8.1:72471569-72471588 | None:intergenic | 40.0% | |
| GAAATGAGTCGGCATTAGAT+AGG | + | chr8.1:72471743-72471762 | MS.gene84839:CDS | 40.0% | |
| GCAGATTCCTTTGACATAGA+TGG | - | chr8.1:72471625-72471644 | None:intergenic | 40.0% | |
| GTGATAGCTTGAAGAAGTTC+TGG | - | chr8.1:72471373-72471392 | None:intergenic | 40.0% | |
| TCAATGTTCCAGCTCGTAAT+AGG | - | chr8.1:72473211-72473230 | None:intergenic | 40.0% | |
| TCTTCTTCAGAAAGACCCTT+TGG | - | chr8.1:72472858-72472877 | None:intergenic | 40.0% | |
| TGAAGTCTCAACACAAGATC+AGG | - | chr8.1:72472096-72472115 | None:intergenic | 40.0% | |
| TTGCATTGTGTCAGATACAG+AGG | - | chr8.1:72471791-72471810 | None:intergenic | 40.0% | |
| ! | AGATAATGGCAATGCCTGAT+AGG | + | chr8.1:72472190-72472209 | MS.gene84839:CDS | 40.0% |
| ! | ATAGCTTGAAGAAGTTCTGG+AGG | - | chr8.1:72471370-72471389 | None:intergenic | 40.0% |
| ! | ATCCTCTTTTAAGCCAAAGC+AGG | + | chr8.1:72471687-72471706 | MS.gene84839:CDS | 40.0% |
| ! | GGCCATATCGTAAGTTTGTT+AGG | + | chr8.1:72472211-72472230 | MS.gene84839:CDS | 40.0% |
| ! | GTCTTTCTGAAGAAGAAGTC+AGG | + | chr8.1:72472862-72472881 | MS.gene84839:CDS | 40.0% |
| ! | TACTGGCTGTAAATTTGGAG+AGG | + | chr8.1:72472058-72472077 | MS.gene84839:CDS | 40.0% |
| !! | AATGCCGACTCATTTCTAAC+AGG | - | chr8.1:72471739-72471758 | None:intergenic | 40.0% |
| ACAGCTTGGATATGAACTGG+TGG | - | chr8.1:72471598-72471617 | None:intergenic | 45.0% | |
| AGAAACTTCTTGAGGCACAC+TGG | + | chr8.1:72472331-72472350 | MS.gene84839:CDS | 45.0% | |
| AGAACAACCAAACCAGCCTA+CGG | + | chr8.1:72471417-72471436 | MS.gene84839:CDS | 45.0% | |
| AGATGTTCAGGCACGTTTGA+GGG | + | chr8.1:72472143-72472162 | MS.gene84839:CDS | 45.0% | |
| ATGTGCGAGGTTGTAATACC+TGG | - | chr8.1:72473156-72473175 | None:intergenic | 45.0% | |
| CAGATATAGGGAGATGTTGC+TGG | + | chr8.1:72472488-72472507 | MS.gene84839:CDS | 45.0% | |
| CCTAATCATCACTTCCTCTC+CGG | - | chr8.1:72472904-72472923 | None:intergenic | 45.0% | |
| CGCACATGCAGTGAATGAAA+TGG | + | chr8.1:72473169-72473188 | MS.gene84839:CDS | 45.0% | |
| GAAACTTCTTGAGGCACACT+GGG | + | chr8.1:72472332-72472351 | MS.gene84839:CDS | 45.0% | |
| GGAACTTGTAAGACAAGTGC+AGG | + | chr8.1:72472254-72472273 | MS.gene84839:CDS | 45.0% | |
| GGACCAGCCAGAAAATATCA+CGG | + | chr8.1:72471859-72471878 | MS.gene84839:CDS | 45.0% | |
| GGGTGGGTAAATATCATGAG+AGG | + | chr8.1:72472388-72472407 | MS.gene84839:CDS | 45.0% | |
| GTGCCTGAACATCTAAAAGG+CGG | - | chr8.1:72472137-72472156 | None:intergenic | 45.0% | |
| TAGATGTTCAGGCACGTTTG+AGG | + | chr8.1:72472142-72472161 | MS.gene84839:CDS | 45.0% | |
| TCTGCTTCAACATCATCTGC+GGG | + | chr8.1:72471640-72471659 | MS.gene84839:CDS | 45.0% | |
| TGGACACAGTTCTGTAAAGC+AGG | + | chr8.1:72471540-72471559 | MS.gene84839:CDS | 45.0% | |
| TTCAACATCATCTGCGGGAA+AGG | + | chr8.1:72471645-72471664 | MS.gene84839:CDS | 45.0% | |
| TTTCATTCACTGCATGTGCG+AGG | - | chr8.1:72473169-72473188 | None:intergenic | 45.0% | |
| ! | ACTTGATTTTGTCCTCCCGT+AGG | - | chr8.1:72471436-72471455 | None:intergenic | 45.0% |
| ! | GTCCTGCTTTGGCTTAAAAG+AGG | - | chr8.1:72471692-72471711 | None:intergenic | 45.0% |
| ! | TTGACGGATGAACTGTCTCT+AGG | - | chr8.1:72472951-72472970 | None:intergenic | 45.0% |
| !! | CTCTTTTGGGTCGTCAATGA+TGG | + | chr8.1:72471921-72471940 | MS.gene84839:CDS | 45.0% |
| !! | GCAGGAATCCTTTTCAAGAG+AGG | + | chr8.1:72471558-72471577 | MS.gene84839:CDS | 45.0% |
| AGAACAACCACGGCATGTTG+AGG | + | chr8.1:72471480-72471499 | MS.gene84839:CDS | 50.0% | |
| ATCCTTCGGCTGAGAAACAG+TGG | - | chr8.1:72471836-72471855 | None:intergenic | 50.0% | |
| CAACCATCCCTATTACGAGC+TGG | + | chr8.1:72473200-72473219 | MS.gene84839:CDS | 50.0% | |
| CCAAAGCAGGACAGTGAACA+TGG | + | chr8.1:72471700-72471719 | MS.gene84839:CDS | 50.0% | |
| CCATGTTCACTGTCCTGCTT+TGG | - | chr8.1:72471703-72471722 | None:intergenic | 50.0% | |
| CCGGAGAGGAAGTGATGATT+AGG | + | chr8.1:72472901-72472920 | MS.gene84839:CDS | 50.0% | |
| GAAACAGTGGTTGCTTGTGC+AGG | - | chr8.1:72471823-72471842 | None:intergenic | 50.0% | |
| GAACAACCAAACCAGCCTAC+GGG | + | chr8.1:72471418-72471437 | MS.gene84839:CDS | 50.0% | |
| GAACTGTGTCCATTAACGGC+AGG | - | chr8.1:72471532-72471551 | None:intergenic | 50.0% | |
| GCTTGGATATGAACTGGTGG+TGG | - | chr8.1:72471595-72471614 | None:intergenic | 50.0% | |
| GTCGGCATTAGATAGGGGAA+AGG | + | chr8.1:72471750-72471769 | MS.gene84839:CDS | 50.0% | |
| GTTCCAGCTCGTAATAGGGA+TGG | - | chr8.1:72473206-72473225 | None:intergenic | 50.0% | |
| GTTTCTCAGCCGAAGGATGT+GGG | + | chr8.1:72471838-72471857 | MS.gene84839:CDS | 50.0% | |
| TATCTCTCTGCAGCATCACC+CGG | - | chr8.1:72472531-72472550 | None:intergenic | 50.0% | |
| TGTTTCTCAGCCGAAGGATG+TGG | + | chr8.1:72471837-72471856 | MS.gene84839:CDS | 50.0% | |
| ! | AACCACTGTTTCTCAGCCGA+AGG | + | chr8.1:72471831-72471850 | MS.gene84839:CDS | 50.0% |
| ! | CAGGGGTCCGTGATATTTTC+TGG | - | chr8.1:72471869-72471888 | None:intergenic | 50.0% |
| ! | GCTCCGCCTTTTAGATGTTC+AGG | + | chr8.1:72472131-72472150 | MS.gene84839:CDS | 50.0% |
| !! | GGTCCGTGATATTTTCTGGC+TGG | - | chr8.1:72471865-72471884 | None:intergenic | 50.0% |
| AGGCGTCTCAGAAAGCTGCA+AGG | + | chr8.1:72472274-72472293 | MS.gene84839:CDS | 55.0% | |
| GAGCAGCAGACTAGCATTCC+GGG | + | chr8.1:72472510-72472529 | MS.gene84839:CDS | 55.0% | |
| GCTGTGTGAACGTCAGCGTA+TGG | + | chr8.1:72472233-72472252 | MS.gene84839:CDS | 55.0% | |
| GGAGCAGCAGACTAGCATTC+CGG | + | chr8.1:72472509-72472528 | MS.gene84839:CDS | 55.0% | |
| GGCGTCTCAGAAAGCTGCAA+GGG | + | chr8.1:72472275-72472294 | MS.gene84839:CDS | 55.0% | |
| GGGAAAGGCTATTGCACCAC+AGG | + | chr8.1:72471765-72471784 | MS.gene84839:CDS | 55.0% | |
| GTGTCAGATACAGAGGCCTG+TGG | - | chr8.1:72471784-72471803 | None:intergenic | 55.0% | |
| TATCACTCCACCGCCTCTTG+AGG | + | chr8.1:72471387-72471406 | MS.gene84839:CDS | 55.0% | |
| TGTTCTGCCTGCACCTCAAG+AGG | - | chr8.1:72471403-72471422 | None:intergenic | 55.0% | |
| ! | GATTTTGTCCTCCCGTAGGC+TGG | - | chr8.1:72471432-72471451 | None:intergenic | 55.0% |
| AAGCAGCTGCGGATGCTGCA+CGG | + | chr8.1:72472655-72472674 | MS.gene84839:CDS | 60.0% | |
| ATGCCCGTACTGCTCGCAAC+AGG | + | chr8.1:72472364-72472383 | MS.gene84839:CDS | 60.0% | |
| CAACCAAACCAGCCTACGGG+AGG | + | chr8.1:72471421-72471440 | MS.gene84839:CDS | 60.0% | |
| GGAGGCAGCAAAAGCAGCTG+CGG | + | chr8.1:72472644-72472663 | MS.gene84839:CDS | 60.0% | |
| TCTGCCTGCACCTCAAGAGG+CGG | - | chr8.1:72471400-72471419 | None:intergenic | 60.0% | |
| TGCCCGTACTGCTCGCAACA+GGG | + | chr8.1:72472365-72472384 | MS.gene84839:CDS | 60.0% | |
| ! | CTGGCTGGTCCCACATCCTT+CGG | - | chr8.1:72471850-72471869 | None:intergenic | 60.0% |
| ! | GCATTGGCCTCAACATGCCG+TGG | - | chr8.1:72471490-72471509 | None:intergenic | 60.0% |
| ! | TGTCCTCCCGTAGGCTGGTT+TGG | - | chr8.1:72471427-72471446 | None:intergenic | 60.0% |
| ACTGCTCGCAACAGGGGGGT+GGG | + | chr8.1:72472372-72472391 | MS.gene84839:CDS | 65.0% | |
| CCCCCCTGTTGCGAGCAGTA+CGG | - | chr8.1:72472371-72472390 | None:intergenic | 65.0% | |
| CCCCCTGTTGCGAGCAGTAC+GGG | - | chr8.1:72472370-72472389 | None:intergenic | 65.0% | |
| CCCGTACTGCTCGCAACAGG+GGG | + | chr8.1:72472367-72472386 | MS.gene84839:CDS | 65.0% | |
| CCGTACTGCTCGCAACAGGG+GGG | + | chr8.1:72472368-72472387 | MS.gene84839:CDS | 65.0% | |
| GCCCGTACTGCTCGCAACAG+GGG | + | chr8.1:72472366-72472385 | MS.gene84839:CDS | 65.0% | |
| TACTGCTCGCAACAGGGGGG+TGG | + | chr8.1:72472371-72472390 | MS.gene84839:CDS | 65.0% | |
| TCCACCGCCTCTTGAGGTGC+AGG | + | chr8.1:72471393-72471412 | MS.gene84839:CDS | 65.0% | |
| TGCGGATGCTGCACGGTTGC+AGG | + | chr8.1:72472662-72472681 | MS.gene84839:CDS | 65.0% | |
| ! | AGGGCTGCTGCTGCTTGTGC+CGG | + | chr8.1:72472882-72472901 | MS.gene84839:CDS | 65.0% |
| ! | TGCTGCTGCTTGTGCCGGAG+AGG | + | chr8.1:72472887-72472906 | MS.gene84839:CDS | 65.0% |
| GCCTGCACCTCAAGAGGCGG+TGG | - | chr8.1:72471397-72471416 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 72471349 | 72473244 | 72471349 | ID=MS.gene84839 |
| chr8.1 | mRNA | 72471349 | 72473244 | 72471349 | ID=MS.gene84839.t1;Parent=MS.gene84839 |
| chr8.1 | exon | 72471349 | 72472683 | 72471349 | ID=MS.gene84839.t1.exon1;Parent=MS.gene84839.t1 |
| chr8.1 | CDS | 72471349 | 72472683 | 72471349 | ID=cds.MS.gene84839.t1;Parent=MS.gene84839.t1 |
| chr8.1 | exon | 72472861 | 72472973 | 72472861 | ID=MS.gene84839.t1.exon2;Parent=MS.gene84839.t1 |
| chr8.1 | CDS | 72472861 | 72472973 | 72472861 | ID=cds.MS.gene84839.t1;Parent=MS.gene84839.t1 |
| chr8.1 | exon | 72473157 | 72473244 | 72473157 | ID=MS.gene84839.t1.exon3;Parent=MS.gene84839.t1 |
| chr8.1 | CDS | 72473157 | 72473244 | 72473157 | ID=cds.MS.gene84839.t1;Parent=MS.gene84839.t1 |
| Gene Sequence |
| Protein sequence |
