Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85039.t1 | XP_013455380.1 | 93.6 | 234 | 15 | 0 | 31 | 264 | 48 | 281 | 3.70E-115 | 424.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85039.t1 | A0A072UJ26 | 93.6 | 234 | 15 | 0 | 31 | 264 | 48 | 281 | 2.6e-115 | 424.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060553 | MS.gene85039 | 0.804196 | 2.43E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85039.t1 | MTR_4g036455 | 93.590 | 234 | 15 | 0 | 31 | 264 | 48 | 281 | 1.24e-147 | 415 |
| MS.gene85039.t1 | MTR_1g080300 | 49.682 | 157 | 74 | 3 | 108 | 263 | 106 | 258 | 2.63e-39 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85039.t1 | AT4G25180 | 43.496 | 246 | 109 | 9 | 33 | 264 | 51 | 280 | 1.50e-44 | 152 |
| MS.gene85039.t1 | AT5G09380 | 46.012 | 163 | 75 | 4 | 105 | 264 | 37 | 189 | 1.26e-38 | 134 |
| MS.gene85039.t1 | AT5G09380 | 46.012 | 163 | 75 | 4 | 105 | 264 | 93 | 245 | 7.58e-38 | 134 |
| MS.gene85039.t1 | AT5G09380 | 45.455 | 143 | 65 | 4 | 105 | 244 | 93 | 225 | 2.60e-30 | 113 |
Find 57 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTGATAAGATAGAATT+TGG | 0.136497 | 4.2:-67776867 | MS.gene85039:CDS |
| TTTATCATCAGCAGAAAATT+TGG | 0.182176 | 4.2:+67777459 | None:intergenic |
| GGAAGACGCCAGCCTAAATT+TGG | 0.255090 | 4.2:-67777942 | MS.gene85039:CDS |
| AACTCGTGTACGTAGCTTAT+TGG | 0.269191 | 4.2:-67780010 | MS.gene85039:intron |
| GGAGCTTCCGGGTGGATATA+TGG | 0.280791 | 4.2:-67773075 | MS.gene85039:CDS |
| GAGTAACTTGTTGGAGCTTC+CGG | 0.291527 | 4.2:-67773087 | MS.gene85039:CDS |
| CCAGAATTGGGCTTCCTTAG+AGG | 0.292912 | 4.2:+67777213 | None:intergenic |
| CAAACCTGGATCTCCAGAAT+TGG | 0.316413 | 4.2:+67777200 | None:intergenic |
| CCTCTAAGGAAGCCCAATTC+TGG | 0.328445 | 4.2:-67777213 | MS.gene85039:CDS |
| TTCTTGATAAGATAGAATTT+GGG | 0.337508 | 4.2:-67776866 | MS.gene85039:CDS |
| ATCTTGATCAAGTATAGTTT+TGG | 0.351285 | 4.2:+67772747 | None:intergenic |
| TACTTCTGTGATAGATGTTA+TGG | 0.351570 | 4.2:-67777392 | MS.gene85039:CDS |
| AGCAGAAGAACTTGGGCTCT+TGG | 0.365101 | 4.2:-67776799 | MS.gene85039:intron |
| CTTAATTCAGCAGAAGAACT+TGG | 0.365722 | 4.2:-67776807 | MS.gene85039:CDS |
| AGTAAAGGGAAGGAGAAAAT+TGG | 0.372837 | 4.2:-67773143 | MS.gene85039:CDS |
| TCACTTTCACTGAGATCATT+TGG | 0.383113 | 4.2:-67777514 | MS.gene85039:CDS |
| TCCTTCCCTTTACTGTTCAC+TGG | 0.383630 | 4.2:+67773152 | None:intergenic |
| AGTAACTTGTTGGAGCTTCC+GGG | 0.414781 | 4.2:-67773086 | MS.gene85039:CDS |
| ATCCTACTACTCTTCCTCTA+AGG | 0.415975 | 4.2:-67777227 | MS.gene85039:CDS |
| GTTTCTCATACAGGTGTCTC+CGG | 0.431384 | 4.2:-67772773 | MS.gene85039:intron |
| TTCACTGGTTCCTTGACAAA+AGG | 0.438829 | 4.2:+67773167 | None:intergenic |
| AAACCTGGATCTCCAGAATT+GGG | 0.453457 | 4.2:+67777201 | None:intergenic |
| GAGCTTCCGGGTGGATATAT+GGG | 0.456952 | 4.2:-67773074 | MS.gene85039:CDS |
| AGGAACCAGTGAACAGTAAA+GGG | 0.461424 | 4.2:-67773157 | MS.gene85039:CDS |
| GGATAGAACTTACATCATAC+AGG | 0.466152 | 4.2:+67773000 | None:intergenic |
| TGATAGTCCATAGCAGTTGA+AGG | 0.471811 | 4.2:+67777421 | None:intergenic |
| GTAGTAGGATAGTTTGTGTC+AGG | 0.472101 | 4.2:+67777240 | None:intergenic |
| AAGCCCAATTCTGGAGATCC+AGG | 0.473812 | 4.2:-67777204 | MS.gene85039:intron |
| TTCCTTAGAGGAAGAGTAGT+AGG | 0.492693 | 4.2:+67777225 | None:intergenic |
| TGGATATATGGGCAAAATGC+AGG | 0.502262 | 4.2:-67773063 | MS.gene85039:CDS |
| AACACATCCTTCAACTGCTA+TGG | 0.515269 | 4.2:-67777428 | MS.gene85039:CDS |
| TTTCTCATACAGGTGTCTCC+GGG | 0.515357 | 4.2:-67772772 | MS.gene85039:intron |
| AAGGAACCAGTGAACAGTAA+AGG | 0.517583 | 4.2:-67773158 | MS.gene85039:CDS |
| AGATCATTTGGCAGTGGTAA+CGG | 0.521564 | 4.2:-67777502 | MS.gene85039:CDS |
| TGCCTTTGCCGATACTCTTG+AGG | 0.523906 | 4.2:+67773118 | None:intergenic |
| TATATATTGCAGGAGAGGGT+TGG | 0.525200 | 4.2:-67777963 | MS.gene85039:intron |
| TATATATTGCAGGAGAGGGT+TGG | 0.525200 | 4.2:-67778881 | MS.gene85039:intron |
| AGGAAATGCATCTCGCGCAC+TGG | 0.533643 | 4.2:+67777546 | None:intergenic |
| TTAATTCAGCAGAAGAACTT+GGG | 0.540436 | 4.2:-67776806 | MS.gene85039:CDS |
| GCTACTAATGTGAAATATGA+TGG | 0.554727 | 4.2:-67776837 | MS.gene85039:CDS |
| AATTGGTACCTCAAGAGTAT+CGG | 0.560079 | 4.2:-67773126 | MS.gene85039:CDS |
| TCACTGAGATCATTTGGCAG+TGG | 0.566587 | 4.2:-67777508 | MS.gene85039:CDS |
| AGTGAAAGTGATGAATCTCT+AGG | 0.578456 | 4.2:+67777526 | None:intergenic |
| CGTGTAGTCTTCGTCATCAG+TGG | 0.578457 | 4.2:+67777363 | None:intergenic |
| TTGACAAAAGGCAGAACAGT+AGG | 0.582684 | 4.2:+67773179 | None:intergenic |
| CACTGATGACGAAGACTACA+CGG | 0.583376 | 4.2:-67777362 | MS.gene85039:CDS |
| ACGAAGACTACACGGAACCA+TGG | 0.591028 | 4.2:-67777354 | MS.gene85039:CDS |
| CGAAGACTACACGGAACCAT+GGG | 0.591952 | 4.2:-67777353 | MS.gene85039:intron |
| TCTTGATAAGATAGAATTTG+GGG | 0.600434 | 4.2:-67776865 | MS.gene85039:CDS |
| ACCAGTGAACAGTAAAGGGA+AGG | 0.601156 | 4.2:-67773153 | MS.gene85039:CDS |
| TGATAAGATAGAATTTGGGG+AGG | 0.632493 | 4.2:-67776862 | MS.gene85039:CDS |
| AGTGGTAACGGTGAAAGCAG+TGG | 0.650268 | 4.2:-67777490 | MS.gene85039:CDS |
| AAAATGCAGGTGTATAAGAG+TGG | 0.654564 | 4.2:-67773050 | MS.gene85039:CDS |
| AACTTGTTGGAGCTTCCGGG+TGG | 0.658487 | 4.2:-67773083 | MS.gene85039:CDS |
| TACCTCAAGAGTATCGGCAA+AGG | 0.659929 | 4.2:-67773120 | MS.gene85039:CDS |
| GATAGAACTTACATCATACA+GGG | 0.671603 | 4.2:+67773001 | None:intergenic |
| AGCTTAAAGAAAATCAACTG+TGG | 0.715988 | 4.2:+67773203 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 67772714 | 67780060 | 67772714 | ID=MS.gene85039 |
| chr4.2 | mRNA | 67772714 | 67780060 | 67772714 | ID=MS.gene85039.t1;Parent=MS.gene85039 |
| chr4.2 | exon | 67780011 | 67780060 | 67780011 | ID=MS.gene85039.t1.exon1;Parent=MS.gene85039.t1 |
| chr4.2 | CDS | 67780011 | 67780060 | 67780011 | ID=cds.MS.gene85039.t1;Parent=MS.gene85039.t1 |
| chr4.2 | exon | 67778852 | 67778891 | 67778852 | ID=MS.gene85039.t1.exon2;Parent=MS.gene85039.t1 |
| chr4.2 | CDS | 67778852 | 67778891 | 67778852 | ID=cds.MS.gene85039.t1;Parent=MS.gene85039.t1 |
| chr4.2 | exon | 67777934 | 67777973 | 67777934 | ID=MS.gene85039.t1.exon3;Parent=MS.gene85039.t1 |
| chr4.2 | CDS | 67777934 | 67777973 | 67777934 | ID=cds.MS.gene85039.t1;Parent=MS.gene85039.t1 |
| chr4.2 | exon | 67777354 | 67777568 | 67777354 | ID=MS.gene85039.t1.exon4;Parent=MS.gene85039.t1 |
| chr4.2 | CDS | 67777354 | 67777568 | 67777354 | ID=cds.MS.gene85039.t1;Parent=MS.gene85039.t1 |
| chr4.2 | exon | 67777205 | 67777265 | 67777205 | ID=MS.gene85039.t1.exon5;Parent=MS.gene85039.t1 |
| chr4.2 | CDS | 67777205 | 67777265 | 67777205 | ID=cds.MS.gene85039.t1;Parent=MS.gene85039.t1 |
| chr4.2 | exon | 67776800 | 67776891 | 67776800 | ID=MS.gene85039.t1.exon6;Parent=MS.gene85039.t1 |
| chr4.2 | CDS | 67776800 | 67776891 | 67776800 | ID=cds.MS.gene85039.t1;Parent=MS.gene85039.t1 |
| chr4.2 | exon | 67773013 | 67773240 | 67773013 | ID=MS.gene85039.t1.exon7;Parent=MS.gene85039.t1 |
| chr4.2 | CDS | 67773013 | 67773240 | 67773013 | ID=cds.MS.gene85039.t1;Parent=MS.gene85039.t1 |
| chr4.2 | exon | 67772714 | 67772782 | 67772714 | ID=MS.gene85039.t1.exon8;Parent=MS.gene85039.t1 |
| chr4.2 | CDS | 67772714 | 67772782 | 67772714 | ID=cds.MS.gene85039.t1;Parent=MS.gene85039.t1 |
| Gene Sequence |
| Protein sequence |