Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85080.t1 | XP_013455414.1 | 99.3 | 405 | 3 | 0 | 1 | 405 | 1 | 405 | 3.10E-222 | 780.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85080.t1 | Q9FGN3 | 52.8 | 381 | 173 | 3 | 23 | 402 | 13 | 387 | 1.1e-108 | 394.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85080.t1 | A0A072UUB0 | 99.3 | 405 | 3 | 0 | 1 | 405 | 1 | 405 | 2.2e-222 | 780.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene85080 | 0.801492 | 8.78E-49 | -1.69E-46 |
| MS.gene050438 | MS.gene85080 | 0.801458 | 8.92E-49 | -1.69E-46 |
| MS.gene050516 | MS.gene85080 | 0.806573 | 7.70E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene85080 | 0.801398 | 9.18E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene85080 | 0.802146 | 6.44E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene85080 | 0.806186 | 9.30E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene85080 | 0.815757 | 7.85E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene85080 | 0.801978 | 6.98E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene85080 | 0.800244 | 1.58E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85080.t1 | MTR_4g036815 | 99.259 | 405 | 3 | 0 | 1 | 405 | 1 | 405 | 0.0 | 824 |
| MS.gene85080.t1 | MTR_3g408430 | 61.042 | 403 | 131 | 9 | 10 | 405 | 7 | 390 | 2.58e-166 | 475 |
| MS.gene85080.t1 | MTR_2g021030 | 31.778 | 343 | 207 | 17 | 82 | 405 | 11 | 345 | 2.35e-19 | 90.1 |
| MS.gene85080.t1 | MTR_2g021030 | 32.086 | 187 | 109 | 9 | 189 | 365 | 256 | 434 | 1.18e-12 | 69.7 |
| MS.gene85080.t1 | MTR_2g021030 | 31.778 | 343 | 207 | 17 | 82 | 405 | 11 | 345 | 4.13e-19 | 89.7 |
| MS.gene85080.t1 | MTR_2g021030 | 29.864 | 221 | 137 | 9 | 189 | 399 | 256 | 468 | 4.71e-14 | 74.3 |
| MS.gene85080.t1 | MTR_1g114610 | 27.596 | 337 | 205 | 17 | 82 | 399 | 20 | 336 | 8.40e-13 | 70.1 |
| MS.gene85080.t1 | MTR_1g012520 | 23.951 | 405 | 220 | 14 | 82 | 399 | 68 | 471 | 4.72e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85080.t1 | AT5G07670 | 55.941 | 404 | 156 | 6 | 1 | 402 | 1 | 384 | 1.09e-147 | 427 |
| MS.gene85080.t1 | AT5G51380 | 53.846 | 390 | 173 | 3 | 14 | 402 | 4 | 387 | 9.86e-137 | 400 |
| MS.gene85080.t1 | AT5G51370 | 57.778 | 315 | 132 | 1 | 90 | 404 | 40 | 353 | 4.22e-118 | 348 |
| MS.gene85080.t1 | AT5G51370 | 58.147 | 313 | 130 | 1 | 90 | 402 | 40 | 351 | 3.62e-117 | 348 |
| MS.gene85080.t1 | AT4G15475 | 28.955 | 335 | 200 | 11 | 82 | 392 | 11 | 331 | 1.68e-17 | 85.1 |
| MS.gene85080.t1 | AT4G15475 | 26.667 | 270 | 180 | 10 | 132 | 391 | 199 | 460 | 8.90e-14 | 73.6 |
| MS.gene85080.t1 | AT5G23340 | 27.778 | 288 | 151 | 12 | 82 | 341 | 10 | 268 | 1.10e-13 | 72.8 |
| MS.gene85080.t1 | AT2G25490 | 25.498 | 251 | 153 | 9 | 189 | 405 | 216 | 466 | 2.53e-11 | 65.9 |
Find 93 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAGAAATTGGGGAAATT+AGG | 0.130048 | 4.2:+66997445 | None:intergenic |
| AGTTTCTTCAATGGCGAATT+AGG | 0.133712 | 4.2:+66997586 | None:intergenic |
| TTGATCAATGATTGAGAAAT+TGG | 0.141986 | 4.2:+66997435 | None:intergenic |
| TCCGGGACTTGATGAGTATT+TGG | 0.154013 | 4.2:-66996615 | MS.gene85080:CDS |
| GCAACAACTATTTGGTTTAA+AGG | 0.182187 | 4.2:+66997517 | None:intergenic |
| TTGAATATGTATATTGATTC+TGG | 0.183844 | 4.2:-66997154 | MS.gene85080:CDS |
| GGTTCGGTTGTTTCGGATAT+TGG | 0.212698 | 4.2:-66996860 | MS.gene85080:CDS |
| TATCTGGTAGATTGATTTAT+AGG | 0.229578 | 4.2:-66997261 | MS.gene85080:CDS |
| ACTTGAACCCTTCTCAAATT+AGG | 0.239059 | 4.2:+66997043 | None:intergenic |
| TGCTAGGGAGATTATTATTC+AGG | 0.242284 | 4.2:-66996501 | MS.gene85080:CDS |
| CCTGTTGAGGTTATTGATAA+TGG | 0.245467 | 4.2:-66997091 | MS.gene85080:CDS |
| GAACACGGTGGTCTGATTTA+TGG | 0.249895 | 4.2:-66997561 | MS.gene85080:CDS |
| TTGCAGCAGCAACAACTATT+TGG | 0.253604 | 4.2:+66997509 | None:intergenic |
| TTCACATTTCTCTGTGAATC+TGG | 0.289076 | 4.2:+66997364 | None:intergenic |
| AATCATGTTGATTTGATTCA+TGG | 0.312777 | 4.2:-66997226 | MS.gene85080:CDS |
| GGCGAATTAGGGTTAGGGTT+AGG | 0.312829 | 4.2:+66997598 | None:intergenic |
| TTTGATGGGATTAAGGCTAT+TGG | 0.316937 | 4.2:-66996770 | MS.gene85080:CDS |
| TGATCAATGATTGAGAAATT+GGG | 0.319273 | 4.2:+66997436 | None:intergenic |
| GCGAATTAGGGTTAGGGTTA+GGG | 0.322778 | 4.2:+66997599 | None:intergenic |
| CTGTTGAGGTTATTGATAAT+GGG | 0.336909 | 4.2:-66997090 | MS.gene85080:CDS |
| AATCAACATGATTAAGATTA+GGG | 0.341888 | 4.2:+66997236 | None:intergenic |
| TTGAGAAATTGGGGAAATTA+GGG | 0.342646 | 4.2:+66997446 | None:intergenic |
| TCGGCTTTGCAACTGTTTGC+AGG | 0.351431 | 4.2:-66996451 | None:intergenic |
| CCGGGACTTGATGAGTATTT+GGG | 0.353254 | 4.2:-66996614 | MS.gene85080:CDS |
| GTGTTCTACATTGCAGGAAT+TGG | 0.354359 | 4.2:-66996978 | MS.gene85080:CDS |
| GTTTCTTCAATGGCGAATTA+GGG | 0.356220 | 4.2:+66997587 | None:intergenic |
| GGGTTAGTTGCTTTAGCTAA+TGG | 0.358130 | 4.2:-66997070 | MS.gene85080:CDS |
| GATCGATTCGGATTCGTGAT+TGG | 0.364905 | 4.2:-66997294 | MS.gene85080:CDS |
| AGATTATTATTCAGGATTGC+TGG | 0.374839 | 4.2:-66996493 | MS.gene85080:CDS |
| TTGGTTTAAAGGCTTTGATT+TGG | 0.375505 | 4.2:+66997528 | None:intergenic |
| AAATCAACATGATTAAGATT+AGG | 0.378177 | 4.2:+66997235 | None:intergenic |
| TTGTGAAGCTTGAGCTTTGT+GGG | 0.380521 | 4.2:-66996805 | MS.gene85080:CDS |
| TGAAATGGGGTTGTTAAGTT+TGG | 0.381444 | 4.2:-66997008 | MS.gene85080:CDS |
| TAAGAAGATTGATTTGAATC+CGG | 0.381569 | 4.2:-66996633 | MS.gene85080:CDS |
| ACAGAGAAATGTGAATTCAT+TGG | 0.382696 | 4.2:-66997356 | MS.gene85080:CDS |
| TTCAATGGCGAATTAGGGTT+AGG | 0.387616 | 4.2:+66997592 | None:intergenic |
| ATTCTGGGTCGACGCCGAAT+TGG | 0.388133 | 4.2:-66997138 | MS.gene85080:CDS |
| TTGAGAAGGGTTCAAGTGAT+TGG | 0.391585 | 4.2:-66997037 | MS.gene85080:CDS |
| TTGATGGGATTAAGGCTATT+GGG | 0.396993 | 4.2:-66996769 | MS.gene85080:CDS |
| TTTCTGTTTGCAGGGTTGCT+AGG | 0.398905 | 4.2:-66996517 | MS.gene85080:CDS |
| GTGTAGTGATAATGTGTTAA+GGG | 0.403587 | 4.2:-66996945 | MS.gene85080:CDS |
| TGAAGAGTGTTCTACATTGC+AGG | 0.404045 | 4.2:-66996984 | MS.gene85080:CDS |
| TTTGCAAAAGTGTCAGTTGC+GGG | 0.408350 | 4.2:-66996564 | MS.gene85080:CDS |
| TGAATATGTATATTGATTCT+GGG | 0.409312 | 4.2:-66997153 | MS.gene85080:CDS |
| GATTGCTGGGGATTCGATAA+TGG | 0.409744 | 4.2:-66996479 | MS.gene85080:CDS |
| TTCTGTTTGCAGGGTTGCTA+GGG | 0.414617 | 4.2:-66996516 | MS.gene85080:CDS |
| GAATTTCATCAGATAACATA+AGG | 0.419470 | 4.2:+66997410 | None:intergenic |
| GTTGAATTTACAAGGTCGTT+TGG | 0.420107 | 4.2:-66997320 | MS.gene85080:CDS |
| CTTGTGAAGCTTGAGCTTTG+TGG | 0.422001 | 4.2:-66996806 | MS.gene85080:CDS |
| CGTGTTCCTAGTTTCTTCAA+TGG | 0.432750 | 4.2:+66997577 | None:intergenic |
| TCCTCACAATTAAACCAATT+CGG | 0.433785 | 4.2:+66997124 | None:intergenic |
| GTCGTTTGGTTCGATCGATT+CGG | 0.438610 | 4.2:-66997306 | MS.gene85080:CDS |
| AGTGTAGTGATAATGTGTTA+AGG | 0.449338 | 4.2:-66996946 | MS.gene85080:CDS |
| GTGATTGGTGCTAGTGAAAT+GGG | 0.450657 | 4.2:-66997022 | MS.gene85080:CDS |
| GGATTCGATAATGGCATGTT+CGG | 0.451374 | 4.2:-66996470 | MS.gene85080:CDS |
| CCATTATCAATAACCTCAAC+AGG | 0.455104 | 4.2:+66997091 | None:intergenic |
| AAGAAGATTGATTTGAATCC+GGG | 0.456191 | 4.2:-66996632 | MS.gene85080:CDS |
| GATCAATGATTGAGAAATTG+GGG | 0.464246 | 4.2:+66997437 | None:intergenic |
| GATTATTATTCAGGATTGCT+GGG | 0.464395 | 4.2:-66996492 | MS.gene85080:CDS |
| GCGGGATAAGAAGAGCGTTT+CGG | 0.467821 | 4.2:-66996546 | MS.gene85080:CDS |
| AGTGATTGGTGCTAGTGAAA+TGG | 0.469678 | 4.2:-66997023 | MS.gene85080:CDS |
| ATCATGTTGATTTGATTCAT+GGG | 0.489312 | 4.2:-66997225 | MS.gene85080:CDS |
| TCAATGGCGAATTAGGGTTA+GGG | 0.492554 | 4.2:+66997593 | None:intergenic |
| ATTCATTGGTTTGTAAAAGA+TGG | 0.495844 | 4.2:-66997342 | MS.gene85080:CDS |
| AAAAGATGGTTGAATTTACA+AGG | 0.506141 | 4.2:-66997328 | MS.gene85080:CDS |
| GGAGAATATGCTTCCTGTTG+AGG | 0.516115 | 4.2:-66997104 | MS.gene85080:CDS |
| AAATTGGTTGGGAATGTTGA+GGG | 0.518791 | 4.2:-66996890 | MS.gene85080:CDS |
| GCCGAATTGGTTTAATTGTG+AGG | 0.522553 | 4.2:-66997125 | MS.gene85080:CDS |
| AATTTCATCAGATAACATAA+GGG | 0.529077 | 4.2:+66997411 | None:intergenic |
| CTTGAGCTTTGTGGGTGTGA+AGG | 0.531367 | 4.2:-66996797 | MS.gene85080:CDS |
| CCCAAATACTCATCAAGTCC+CGG | 0.535072 | 4.2:+66996614 | None:intergenic |
| ATGGTTGTCCTAATTTGAGA+AGG | 0.537606 | 4.2:-66997051 | MS.gene85080:CDS |
| TGGGAAGTGTTGTCAGATGT+TGG | 0.541636 | 4.2:-66996750 | MS.gene85080:CDS |
| TGTAGTGATAATGTGTTAAG+GGG | 0.549508 | 4.2:-66996944 | MS.gene85080:CDS |
| TTGAGCTTTGTGGGTGTGAA+GGG | 0.551393 | 4.2:-66996796 | MS.gene85080:CDS |
| AAATGCAGCCTCTCAAGTGC+AGG | 0.555404 | 4.2:+66996584 | None:intergenic |
| GTTCTTGTCCTGCACTTGAG+AGG | 0.559400 | 4.2:-66996592 | MS.gene85080:CDS |
| ATCATAGAATGGATGATGGA+TGG | 0.571302 | 4.2:-66996709 | MS.gene85080:CDS |
| GACATTGTGTGATCATAGAA+TGG | 0.573800 | 4.2:-66996720 | MS.gene85080:CDS |
| TGGTTGTCCTAATTTGAGAA+GGG | 0.574459 | 4.2:-66997050 | MS.gene85080:CDS |
| GTGAGAATTTGAAGACGTTG+AGG | 0.581735 | 4.2:-66996667 | MS.gene85080:CDS |
| AATTCGCCATTGAAGAAACT+AGG | 0.585056 | 4.2:-66997583 | MS.gene85080:CDS |
| TGTGATCATAGAATGGATGA+TGG | 0.591492 | 4.2:-66996713 | MS.gene85080:CDS |
| GAAATTGGTTGGGAATGTTG+AGG | 0.606598 | 4.2:-66996891 | MS.gene85080:CDS |
| TAGAATGGATGATGGATGGA+TGG | 0.612140 | 4.2:-66996705 | MS.gene85080:CDS |
| ATTTGCAAAAGTGTCAGTTG+CGG | 0.627786 | 4.2:-66996565 | MS.gene85080:CDS |
| ATTATTATTCAGGATTGCTG+GGG | 0.650156 | 4.2:-66996491 | MS.gene85080:CDS |
| GTAGTGATAATGTGTTAAGG+GGG | 0.652549 | 4.2:-66996943 | MS.gene85080:CDS |
| GGATGATGGATGGATGGCTG+CGG | 0.655457 | 4.2:-66996699 | MS.gene85080:CDS |
| CATTGAAGAAACTAGGAACA+CGG | 0.661833 | 4.2:-66997576 | MS.gene85080:CDS |
| GAAGTGTTGTCAGATGTTGG+AGG | 0.680445 | 4.2:-66996747 | MS.gene85080:CDS |
| TGATTGGTGCTAGTGAAATG+GGG | 0.753807 | 4.2:-66997021 | MS.gene85080:CDS |
| TGAAGAAACTAGGAACACGG+TGG | 0.807458 | 4.2:-66997573 | MS.gene85080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAACATGATTAAGATT+AGG | + | chr4.2:66996866-66996885 | None:intergenic | 20.0% |
| !! | AATCAACATGATTAAGATTA+GGG | + | chr4.2:66996865-66996884 | None:intergenic | 20.0% |
| !! | AATTTCATCAGATAACATAA+GGG | + | chr4.2:66996690-66996709 | None:intergenic | 20.0% |
| !!! | TGAATATGTATATTGATTCT+GGG | - | chr4.2:66996945-66996964 | MS.gene85080:CDS | 20.0% |
| !!! | TTGAATATGTATATTGATTC+TGG | - | chr4.2:66996944-66996963 | MS.gene85080:CDS | 20.0% |
| ! | AAAAGATGGTTGAATTTACA+AGG | - | chr4.2:66996770-66996789 | MS.gene85080:CDS | 25.0% |
| ! | GAATTTCATCAGATAACATA+AGG | + | chr4.2:66996691-66996710 | None:intergenic | 25.0% |
| ! | TGATCAATGATTGAGAAATT+GGG | + | chr4.2:66996665-66996684 | None:intergenic | 25.0% |
| ! | TTGATCAATGATTGAGAAAT+TGG | + | chr4.2:66996666-66996685 | None:intergenic | 25.0% |
| !! | TATCTGGTAGATTGATTTAT+AGG | - | chr4.2:66996837-66996856 | MS.gene85080:CDS | 25.0% |
| !!! | AATCATGTTGATTTGATTCA+TGG | - | chr4.2:66996872-66996891 | MS.gene85080:CDS | 25.0% |
| !!! | ATCATGTTGATTTGATTCAT+GGG | - | chr4.2:66996873-66996892 | MS.gene85080:CDS | 25.0% |
| !!! | ATTCATTGGTTTGTAAAAGA+TGG | - | chr4.2:66996756-66996775 | MS.gene85080:CDS | 25.0% |
| !!! | GAATTTGCAGATTTTGAAAT+TGG | - | chr4.2:66997192-66997211 | MS.gene85080:CDS | 25.0% |
| !!! | TAAGAAGATTGATTTGAATC+CGG | - | chr4.2:66997465-66997484 | MS.gene85080:CDS | 25.0% |
| ACAGAGAAATGTGAATTCAT+TGG | - | chr4.2:66996742-66996761 | MS.gene85080:CDS | 30.0% | |
| AGATTATTATTCAGGATTGC+TGG | - | chr4.2:66997605-66997624 | MS.gene85080:CDS | 30.0% | |
| ATTATTATTCAGGATTGCTG+GGG | - | chr4.2:66997607-66997626 | MS.gene85080:CDS | 30.0% | |
| ATTGAGAAATTGGGGAAATT+AGG | + | chr4.2:66996656-66996675 | None:intergenic | 30.0% | |
| GATCAATGATTGAGAAATTG+GGG | + | chr4.2:66996664-66996683 | None:intergenic | 30.0% | |
| GATTATTATTCAGGATTGCT+GGG | - | chr4.2:66997606-66997625 | MS.gene85080:CDS | 30.0% | |
| TCCTCACAATTAAACCAATT+CGG | + | chr4.2:66996977-66996996 | None:intergenic | 30.0% | |
| TTGAGAAATTGGGGAAATTA+GGG | + | chr4.2:66996655-66996674 | None:intergenic | 30.0% | |
| ! | AGTGTAGTGATAATGTGTTA+AGG | - | chr4.2:66997152-66997171 | MS.gene85080:CDS | 30.0% |
| ! | CTGTTGAGGTTATTGATAAT+GGG | - | chr4.2:66997008-66997027 | MS.gene85080:CDS | 30.0% |
| ! | GCAACAACTATTTGGTTTAA+AGG | + | chr4.2:66996584-66996603 | None:intergenic | 30.0% |
| ! | GTGTAGTGATAATGTGTTAA+GGG | - | chr4.2:66997153-66997172 | MS.gene85080:CDS | 30.0% |
| ! | TGTAGTGATAATGTGTTAAG+GGG | - | chr4.2:66997154-66997173 | MS.gene85080:CDS | 30.0% |
| ! | TTGGTTTAAAGGCTTTGATT+TGG | + | chr4.2:66996573-66996592 | None:intergenic | 30.0% |
| !! | AAATTAGGGTTTGATTTTCG+AGG | + | chr4.2:66996641-66996660 | None:intergenic | 30.0% |
| !! | AAGAAGATTGATTTGAATCC+GGG | - | chr4.2:66997466-66997485 | MS.gene85080:CDS | 30.0% |
| !!! | ATTTTATGGTTCGGTTGTTT+CGG | - | chr4.2:66997231-66997250 | MS.gene85080:CDS | 30.0% |
| !!! | GATTGGAACTTTGTTTTATC+TGG | - | chr4.2:66996821-66996840 | MS.gene85080:CDS | 30.0% |
| !!! | TGCAGATTTTGAAATTGGTT+GGG | - | chr4.2:66997197-66997216 | MS.gene85080:CDS | 30.0% |
| !!! | TTGCAGATTTTGAAATTGGT+TGG | - | chr4.2:66997196-66997215 | MS.gene85080:CDS | 30.0% |
| AAATTGGTTGGGAATGTTGA+GGG | - | chr4.2:66997208-66997227 | MS.gene85080:CDS | 35.0% | |
| AATTCGCCATTGAAGAAACT+AGG | - | chr4.2:66996515-66996534 | MS.gene85080:CDS | 35.0% | |
| ACTTGAACCCTTCTCAAATT+AGG | + | chr4.2:66997058-66997077 | None:intergenic | 35.0% | |
| AGTTTCTTCAATGGCGAATT+AGG | + | chr4.2:66996515-66996534 | None:intergenic | 35.0% | |
| ATGGTTGTCCTAATTTGAGA+AGG | - | chr4.2:66997047-66997066 | MS.gene85080:CDS | 35.0% | |
| CATTGAAGAAACTAGGAACA+CGG | - | chr4.2:66996522-66996541 | MS.gene85080:CDS | 35.0% | |
| CCATTATCAATAACCTCAAC+AGG | + | chr4.2:66997010-66997029 | None:intergenic | 35.0% | |
| CCTGTTGAGGTTATTGATAA+TGG | - | chr4.2:66997007-66997026 | MS.gene85080:CDS | 35.0% | |
| GACATTGTGTGATCATAGAA+TGG | - | chr4.2:66997378-66997397 | MS.gene85080:CDS | 35.0% | |
| GTTGAATTTACAAGGTCGTT+TGG | - | chr4.2:66996778-66996797 | MS.gene85080:CDS | 35.0% | |
| GTTTCTTCAATGGCGAATTA+GGG | + | chr4.2:66996514-66996533 | None:intergenic | 35.0% | |
| TGAAATGGGGTTGTTAAGTT+TGG | - | chr4.2:66997090-66997109 | MS.gene85080:CDS | 35.0% | |
| TGCTAGGGAGATTATTATTC+AGG | - | chr4.2:66997597-66997616 | MS.gene85080:CDS | 35.0% | |
| TGGTTGTCCTAATTTGAGAA+GGG | - | chr4.2:66997048-66997067 | MS.gene85080:CDS | 35.0% | |
| TGTGATCATAGAATGGATGA+TGG | - | chr4.2:66997385-66997404 | MS.gene85080:CDS | 35.0% | |
| TTCACATTTCTCTGTGAATC+TGG | + | chr4.2:66996737-66996756 | None:intergenic | 35.0% | |
| TTGATGGGATTAAGGCTATT+GGG | - | chr4.2:66997329-66997348 | MS.gene85080:CDS | 35.0% | |
| TTTGATGGGATTAAGGCTAT+TGG | - | chr4.2:66997328-66997347 | MS.gene85080:CDS | 35.0% | |
| ! | GTAGTGATAATGTGTTAAGG+GGG | - | chr4.2:66997155-66997174 | MS.gene85080:CDS | 35.0% |
| ! | TGTTGAGGGATTTTATGGTT+CGG | - | chr4.2:66997222-66997241 | MS.gene85080:CDS | 35.0% |
| !! | ATCATAGAATGGATGATGGA+TGG | - | chr4.2:66997389-66997408 | MS.gene85080:CDS | 35.0% |
| !! | ATTTGCAAAAGTGTCAGTTG+CGG | - | chr4.2:66997533-66997552 | MS.gene85080:CDS | 35.0% |
| !!! | GTTTGACGATTTTAGCTCAA+GGG | - | chr4.2:66997260-66997279 | MS.gene85080:CDS | 35.0% |
| CGTGTTCCTAGTTTCTTCAA+TGG | + | chr4.2:66996524-66996543 | None:intergenic | 40.0% | |
| GAAATTGGTTGGGAATGTTG+AGG | - | chr4.2:66997207-66997226 | MS.gene85080:CDS | 40.0% | |
| GTGAGAATTTGAAGACGTTG+AGG | - | chr4.2:66997431-66997450 | MS.gene85080:CDS | 40.0% | |
| GTGTTCTACATTGCAGGAAT+TGG | - | chr4.2:66997120-66997139 | MS.gene85080:CDS | 40.0% | |
| TAATGTGTTAAGGGGGATTG+CGG | - | chr4.2:66997162-66997181 | MS.gene85080:CDS | 40.0% | |
| TCAATGGCGAATTAGGGTTA+GGG | + | chr4.2:66996508-66996527 | None:intergenic | 40.0% | |
| TTCAATGGCGAATTAGGGTT+AGG | + | chr4.2:66996509-66996528 | None:intergenic | 40.0% | |
| TTGAGAAGGGTTCAAGTGAT+TGG | - | chr4.2:66997061-66997080 | MS.gene85080:CDS | 40.0% | |
| TTGCAGCAGCAACAACTATT+TGG | + | chr4.2:66996592-66996611 | None:intergenic | 40.0% | |
| ! | GCCGAATTGGTTTAATTGTG+AGG | - | chr4.2:66996973-66996992 | MS.gene85080:CDS | 40.0% |
| ! | GGATTCGATAATGGCATGTT+CGG | - | chr4.2:66997628-66997647 | MS.gene85080:CDS | 40.0% |
| ! | GGGAATGTTGAGGGATTTTA+TGG | - | chr4.2:66997217-66997236 | MS.gene85080:CDS | 40.0% |
| ! | TTGTGAAGCTTGAGCTTTGT+GGG | - | chr4.2:66997293-66997312 | MS.gene85080:CDS | 40.0% |
| !! | AGGGAGTTTTGATGGGATTA+AGG | - | chr4.2:66997321-66997340 | MS.gene85080:CDS | 40.0% |
| !! | AGTGATTGGTGCTAGTGAAA+TGG | - | chr4.2:66997075-66997094 | MS.gene85080:CDS | 40.0% |
| !! | GGGTTAGTTGCTTTAGCTAA+TGG | - | chr4.2:66997028-66997047 | MS.gene85080:CDS | 40.0% |
| !! | GTGATTGGTGCTAGTGAAAT+GGG | - | chr4.2:66997076-66997095 | MS.gene85080:CDS | 40.0% |
| !! | TAGAATGGATGATGGATGGA+TGG | - | chr4.2:66997393-66997412 | MS.gene85080:CDS | 40.0% |
| !! | TGAAGAGTGTTCTACATTGC+AGG | - | chr4.2:66997114-66997133 | MS.gene85080:CDS | 40.0% |
| !! | TGATTGGTGCTAGTGAAATG+GGG | - | chr4.2:66997077-66997096 | MS.gene85080:CDS | 40.0% |
| !! | TTTGCAAAAGTGTCAGTTGC+GGG | - | chr4.2:66997534-66997553 | MS.gene85080:CDS | 40.0% |
| !!! | GGCTTTGTTTTCTGTTTGCA+GGG | - | chr4.2:66997573-66997592 | MS.gene85080:CDS | 40.0% |
| !!! | GGTTTGACGATTTTAGCTCA+AGG | - | chr4.2:66997259-66997278 | MS.gene85080:CDS | 40.0% |
| !!! | TTTTAGCTCAAGGGTGTAAG+AGG | - | chr4.2:66997269-66997288 | MS.gene85080:CDS | 40.0% |
| CCCAAATACTCATCAAGTCC+CGG | + | chr4.2:66997487-66997506 | None:intergenic | 45.0% | |
| CCGGGACTTGATGAGTATTT+GGG | - | chr4.2:66997484-66997503 | MS.gene85080:CDS | 45.0% | |
| CTTGTGAAGCTTGAGCTTTG+TGG | - | chr4.2:66997292-66997311 | MS.gene85080:CDS | 45.0% | |
| GAACACGGTGGTCTGATTTA+TGG | - | chr4.2:66996537-66996556 | MS.gene85080:CDS | 45.0% | |
| GATTGCTGGGGATTCGATAA+TGG | - | chr4.2:66997619-66997638 | MS.gene85080:CDS | 45.0% | |
| GCGAATTAGGGTTAGGGTTA+GGG | + | chr4.2:66996502-66996521 | None:intergenic | 45.0% | |
| GGAGAATATGCTTCCTGTTG+AGG | - | chr4.2:66996994-66997013 | MS.gene85080:CDS | 45.0% | |
| TCCGGGACTTGATGAGTATT+TGG | - | chr4.2:66997483-66997502 | MS.gene85080:CDS | 45.0% | |
| TGAAGAAACTAGGAACACGG+TGG | - | chr4.2:66996525-66996544 | MS.gene85080:CDS | 45.0% | |
| TTCTGTTTGCAGGGTTGCTA+GGG | - | chr4.2:66997582-66997601 | MS.gene85080:CDS | 45.0% | |
| TTTCTGTTTGCAGGGTTGCT+AGG | - | chr4.2:66997581-66997600 | MS.gene85080:CDS | 45.0% | |
| ! | GGTTCGGTTGTTTCGGATAT+TGG | - | chr4.2:66997238-66997257 | MS.gene85080:CDS | 45.0% |
| ! | GTCGTTTGGTTCGATCGATT+CGG | - | chr4.2:66996792-66996811 | MS.gene85080:CDS | 45.0% |
| ! | TTGAGCTTTGTGGGTGTGAA+GGG | - | chr4.2:66997302-66997321 | MS.gene85080:CDS | 45.0% |
| !! | GAAGTGTTGTCAGATGTTGG+AGG | - | chr4.2:66997351-66997370 | MS.gene85080:CDS | 45.0% |
| !! | GATCGATTCGGATTCGTGAT+TGG | - | chr4.2:66996804-66996823 | MS.gene85080:CDS | 45.0% |
| !! | GGTGTGAAGGGAGTTTTGAT+GGG | - | chr4.2:66997314-66997333 | MS.gene85080:CDS | 45.0% |
| !! | TGGGAAGTGTTGTCAGATGT+TGG | - | chr4.2:66997348-66997367 | MS.gene85080:CDS | 45.0% |
| !!! | CGGCTTTGTTTTCTGTTTGC+AGG | - | chr4.2:66997572-66997591 | MS.gene85080:CDS | 45.0% |
| AAATGCAGCCTCTCAAGTGC+AGG | + | chr4.2:66997517-66997536 | None:intergenic | 50.0% | |
| GGCGAATTAGGGTTAGGGTT+AGG | + | chr4.2:66996503-66996522 | None:intergenic | 50.0% | |
| GTTCTTGTCCTGCACTTGAG+AGG | - | chr4.2:66997506-66997525 | MS.gene85080:CDS | 50.0% | |
| ! | CTTGAGCTTTGTGGGTGTGA+AGG | - | chr4.2:66997301-66997320 | MS.gene85080:CDS | 50.0% |
| !! | GCGGGATAAGAAGAGCGTTT+CGG | - | chr4.2:66997552-66997571 | MS.gene85080:CDS | 50.0% |
| !! | GGGTGTGAAGGGAGTTTTGA+TGG | - | chr4.2:66997313-66997332 | MS.gene85080:CDS | 50.0% |
| ATTCTGGGTCGACGCCGAAT+TGG | - | chr4.2:66996960-66996979 | MS.gene85080:CDS | 55.0% | |
| !! | GGATGATGGATGGATGGCTG+CGG | - | chr4.2:66997399-66997418 | MS.gene85080:CDS | 55.0% |
| TAAGGGGGATTGCGGCGTGT+GGG | - | chr4.2:66997170-66997189 | MS.gene85080:CDS | 60.0% | |
| TTAAGGGGGATTGCGGCGTG+TGG | - | chr4.2:66997169-66997188 | MS.gene85080:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 66996452 | 66997668 | 66996452 | ID=MS.gene85080 |
| chr4.2 | mRNA | 66996452 | 66997668 | 66996452 | ID=MS.gene85080.t1;Parent=MS.gene85080 |
| chr4.2 | exon | 66996452 | 66997668 | 66996452 | ID=MS.gene85080.t1.exon1;Parent=MS.gene85080.t1 |
| chr4.2 | CDS | 66996452 | 66997668 | 66996452 | ID=cds.MS.gene85080.t1;Parent=MS.gene85080.t1 |
| Gene Sequence |
| Protein sequence |
