AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050438


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050438.t1 MTR_7g109970 97.423 194 5 0 1 194 1 194 1.45e-137 382
MS.gene050438.t1 MTR_7g109970 94.845 194 5 1 1 194 1 189 2.05e-131 366
MS.gene050438.t1 MTR_7g109970 96.933 163 5 0 1 163 1 163 3.24e-114 323
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050438.t1 AT4G01900 64.737 190 64 2 2 188 3 192 3.64e-79 234

Find 56 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAAGGGTTTGTTGAAAA+TGG 0.110086 7.1:+4614828 MS.gene050438:intron
AAGCATTTCCGTTGCTTCTT+AGG 0.201591 7.1:-4613320 None:intergenic
GAGCAGGCTGAGAGGATGGC+TGG 0.291038 7.1:+4616248 MS.gene050438:CDS
TGTCAAGGGGTTTGGTGCTC+AGG 0.292542 7.1:+4614876 MS.gene050438:CDS
GGCAGTGATAAACAAAATTA+TGG 0.303869 7.1:+4615830 MS.gene050438:CDS
ACTTTGTAAAACTTGGATTC+AGG 0.343647 7.1:-4613467 None:intergenic
ATGACGCTGAAGCTTGAAAA+AGG 0.344708 7.1:-4613258 None:intergenic
GGCTTCAACTTTGTAAAACT+TGG 0.345055 7.1:-4613474 None:intergenic
TTGAAGGGTTTGTTGAAAAT+GGG 0.351307 7.1:+4614829 MS.gene050438:intron
ATTAGAGCTCAAAACCTTCC+TGG 0.371130 7.1:+4613357 MS.gene050438:CDS
ATTATGGAGACGGCAAGAAC+TGG 0.371236 7.1:+4615846 MS.gene050438:CDS
ATTCTTATTACATCAGATAC+AGG 0.377029 7.1:-4616110 None:intergenic
GTATCTGATGTCAAGGGGTT+TGG 0.410939 7.1:+4614868 MS.gene050438:CDS
GCAGGCTGAGAGGATGGCTG+GGG 0.412639 7.1:+4616250 MS.gene050438:CDS
CTCAGGTGAGCGTGGGGAGC+AGG 0.426072 7.1:+4616232 MS.gene050438:intron
AGCGTCATTCGCAAGCGTTT+CGG 0.427268 7.1:+4613273 MS.gene050438:CDS
TTCAAACCGTTGAACACGTT+CGG 0.428080 7.1:-4613210 None:intergenic
ACGGCAAGAACTGGGGAGAT+TGG 0.438088 7.1:+4615855 MS.gene050438:CDS
GTCAAGGGGTTTGGTGCTCA+GGG 0.446794 7.1:+4614877 MS.gene050438:CDS
GGGTGGCTCAAAAGAGAGGC+AGG 0.447663 7.1:+4614897 MS.gene050438:CDS
ACAAAGTTGAAGCCATTCTC+AGG 0.467569 7.1:+4613483 MS.gene050438:CDS
GAGAATCCCTCAGGTTTCTT+CGG 0.476128 7.1:+4613610 MS.gene050438:CDS
CAAAGTTAAAATGGAAATAG+TGG 0.476633 7.1:+4615372 MS.gene050438:CDS
AGCAGGCTGAGAGGATGGCT+GGG 0.478955 7.1:+4616249 MS.gene050438:CDS
AAGAAGCAACGGAAATGCTT+CGG 0.517017 7.1:+4613323 MS.gene050438:CDS
GCGAAACCGAACGTGTTCAA+CGG 0.522571 7.1:+4613204 MS.gene050438:CDS
TTATGGAGACGGCAAGAACT+GGG 0.538464 7.1:+4615847 MS.gene050438:CDS
TGGGGAGCAGGCTGAGAGGA+TGG 0.538555 7.1:+4616244 MS.gene050438:CDS
CAGGCCATGGAGAATCCCTC+AGG 0.546227 7.1:+4613601 MS.gene050438:intron
TTGTTGAAAATGGGAATTCG+TGG 0.546383 7.1:+4614838 MS.gene050438:CDS
TGTCACTGTATCTGATGTCA+AGG 0.549422 7.1:+4614861 MS.gene050438:CDS
TACGAATTCTCAGGTGAGCG+TGG 0.552687 7.1:+4616224 MS.gene050438:intron
GTCACTGTATCTGATGTCAA+GGG 0.559409 7.1:+4614862 MS.gene050438:CDS
CAGGCTGAGAGGATGGCTGG+GGG 0.559678 7.1:+4616251 MS.gene050438:CDS
ACGAATTCTCAGGTGAGCGT+GGG 0.562826 7.1:+4616225 MS.gene050438:intron
GATAAACAAAATTATGGAGA+CGG 0.573347 7.1:+4615836 MS.gene050438:CDS
AGAGTGTTATAACCTGAGAA+TGG 0.584237 7.1:-4613495 None:intergenic
AAGGGGTTTGGTGCTCAGGG+TGG 0.584971 7.1:+4614880 MS.gene050438:CDS
CTCAGGGTGGCTCAAAAGAG+AGG 0.595032 7.1:+4614893 MS.gene050438:CDS
AGAACTGGGGAGATTGGTGA+TGG 0.606984 7.1:+4615861 MS.gene050438:CDS
GGTGGCTCAAAAGAGAGGCA+GGG 0.611036 7.1:+4614898 MS.gene050438:CDS
GAAACCTGAGGGATTCTCCA+TGG 0.612179 7.1:-4613605 None:intergenic
AATAGTGGTGAGAAAAGACC+AGG 0.614772 7.1:+4615387 MS.gene050438:CDS
GAAAGGAAATCGAACCAGGA+AGG 0.619778 7.1:-4613371 None:intergenic
CGAATTCTCAGGTGAGCGTG+GGG 0.630631 7.1:+4616226 MS.gene050438:intron
TCACTGTATCTGATGTCAAG+GGG 0.633367 7.1:+4614863 MS.gene050438:CDS
TTCTTATTACATCAGATACA+GGG 0.641858 7.1:-4616109 None:intergenic
AATGTGGTCCTAAGAAGCAA+CGG 0.643539 7.1:+4613312 MS.gene050438:CDS
GATGTAATAAGAATCCGCAC+AGG 0.649812 7.1:+4616119 MS.gene050438:CDS
AGCGTGGGGAGCAGGCTGAG+AGG 0.654625 7.1:+4616240 MS.gene050438:CDS
TATGGAGACGGCAAGAACTG+GGG 0.666410 7.1:+4615848 MS.gene050438:CDS
GGCTCAAAAGAGAGGCAGGG+AGG 0.670235 7.1:+4614901 MS.gene050438:CDS
GTATTACCGAAGAAACCTGA+GGG 0.672298 7.1:-4613616 None:intergenic
GGAGCAAATGGTTACCTGTG+CGG 0.676931 7.1:-4616133 None:intergenic
TGTATTACCGAAGAAACCTG+AGG 0.679907 7.1:-4613617 None:intergenic
AGATTCTTCTCATCGCAATG+TGG 0.698371 7.1:+4613296 MS.gene050438:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAGTTAATAAATTAATTAT+TGG + chr7.1:4613923-4613942 MS.gene050438:intron 10.0%
!! TTTCATAATAAAATAGTTTA+AGG + chr7.1:4615981-4616000 MS.gene050438:intron 10.0%
!!! TTTTTATTGTAAAATTTGAA+GGG + chr7.1:4614814-4614833 MS.gene050438:intron 10.0%
!!! TTTTTTATTGTAAAATTTGA+AGG + chr7.1:4614813-4614832 MS.gene050438:intron 10.0%
!! AGATTCTAATAAAAAATATC+AGG - chr7.1:4615962-4615981 None:intergenic 15.0%
!! ATAATAAAATAGTTTAAGGA+GGG + chr7.1:4615985-4616004 MS.gene050438:intron 15.0%
!! TCAGTCAATAAATTAATTAT+TGG + chr7.1:4613895-4613914 MS.gene050438:intron 15.0%
!!! AGTTTTATCATTAATAGAAT+GGG + chr7.1:4614635-4614654 MS.gene050438:intron 15.0%
!!! ATGTTAATTGTTTAGAATAT+TGG - chr7.1:4615473-4615492 None:intergenic 15.0%
!!! ATTTTGTTTGTAATTAAAAG+TGG - chr7.1:4615760-4615779 None:intergenic 15.0%
!!! TAGTTTTATCATTAATAGAA+TGG + chr7.1:4614634-4614653 MS.gene050438:intron 15.0%
!!! TGTTAATTGTTTAGAATATT+GGG - chr7.1:4615472-4615491 None:intergenic 15.0%
!! AAAGTTACAAACATAAAACA+CGG - chr7.1:4615178-4615197 None:intergenic 20.0%
!! AATAGTTTAGTGATGAAATA+TGG - chr7.1:4615049-4615068 None:intergenic 20.0%
!! CATAATAAAATAGTTTAAGG+AGG + chr7.1:4615984-4616003 MS.gene050438:intron 20.0%
!! TAAAACTACTAAACTCAATT+TGG + chr7.1:4616044-4616063 MS.gene050438:intron 20.0%
!! TAACTGTTATGTTAATTAGT+TGG + chr7.1:4613956-4613975 MS.gene050438:intron 20.0%
!!! AATTACATTTTTCCTTCATT+TGG + chr7.1:4615226-4615245 MS.gene050438:intron 20.0%
!!! ATTACATTTTTCCTTCATTT+GGG + chr7.1:4615227-4615246 MS.gene050438:intron 20.0%
!!! ATTGTTTAGATCTATTGATT+TGG + chr7.1:4615503-4615522 MS.gene050438:intron 20.0%
!!! TATATATCATGCATTTTTTC+AGG + chr7.1:4615803-4615822 MS.gene050438:intron 20.0%
!!! TCTTGTTATTTTCACTAAAT+CGG + chr7.1:4613691-4613710 MS.gene050438:intron 20.0%
!!! TTGTTTAGATCTATTGATTT+GGG + chr7.1:4615504-4615523 MS.gene050438:intron 20.0%
! AAATTCAGTATATTAGCAGA+AGG - chr7.1:4614796-4614815 None:intergenic 25.0%
! ACAAATTCATGTTAAGAGTT+TGG + chr7.1:4614989-4615008 MS.gene050438:intron 25.0%
! ATATAGATGAACATAGCAAT+AGG - chr7.1:4613396-4613415 None:intergenic 25.0%
! ATTCTTATTACATCAGATAC+AGG - chr7.1:4616113-4616132 None:intergenic 25.0%
! ATTTGTCTTAGAAGTTAACA+AGG - chr7.1:4614975-4614994 None:intergenic 25.0%
! CAAAGTTAAAATGGAAATAG+TGG + chr7.1:4615372-4615391 MS.gene050438:CDS 25.0%
! GATAAACAAAATTATGGAGA+CGG + chr7.1:4615836-4615855 MS.gene050438:CDS 25.0%
! GCAAATTCAGTTAACTATTA+TGG + chr7.1:4613775-4613794 MS.gene050438:intron 25.0%
! GTGTTTGAATTATTTAGTAG+TGG + chr7.1:4615713-4615732 MS.gene050438:intron 25.0%
! GTTAGTATTTATAGCCATAA+GGG + chr7.1:4614118-4614137 MS.gene050438:intron 25.0%
! TAACTAACACTGTTAATCTA+AGG - chr7.1:4613862-4613881 None:intergenic 25.0%
! TGGAAATAAATTATACGTCA+TGG + chr7.1:4615915-4615934 MS.gene050438:intron 25.0%
! TTAGTATTTATAGCCATAAG+GGG + chr7.1:4614119-4614138 MS.gene050438:intron 25.0%
! TTCTTATTACATCAGATACA+GGG - chr7.1:4616112-4616131 None:intergenic 25.0%
! TTTGTCTTAGAAGTTAACAA+GGG - chr7.1:4614974-4614993 None:intergenic 25.0%
!! CATATATGTATTTTTCATCC+AGG + chr7.1:4614760-4614779 MS.gene050438:intron 25.0%
!! CTAAATTCTGTTAGTGTTTT+TGG + chr7.1:4613809-4613828 MS.gene050438:intron 25.0%
!! CTATTGAAAATGAAACCTTT+TGG - chr7.1:4614538-4614557 None:intergenic 25.0%
!! TATTGCTACAAATACTTTTG+TGG + chr7.1:4614588-4614607 MS.gene050438:intron 25.0%
!! TTTTGTTGCCAAAGTTAAAA+TGG + chr7.1:4615363-4615382 MS.gene050438:CDS 25.0%
!!! AAAGAGCAAGTGTTTTTTTA+AGG - chr7.1:4615100-4615119 None:intergenic 25.0%
!!! AGTTTTAAATACGAATTCTC+AGG + chr7.1:4616215-4616234 MS.gene050438:intron 25.0%
!!! CACTATTTCCATTTTAACTT+TGG - chr7.1:4615374-4615393 None:intergenic 25.0%
!!! TATGTTTTTAGAGAATTCAC+TGG - chr7.1:4616157-4616176 None:intergenic 25.0%
!!! TCTTTTTTTCTACTTCCAAA+AGG + chr7.1:4614520-4614539 MS.gene050438:intron 25.0%
AAATGTTAGCGCACAAATTT+AGG + chr7.1:4615131-4615150 MS.gene050438:intron 30.0%
AAGTACAAACTCAAAAGTCA+TGG - chr7.1:4614685-4614704 None:intergenic 30.0%
AATTCATGTTAAGAGTTTGG+AGG + chr7.1:4614992-4615011 MS.gene050438:intron 30.0%
ACTTTGTAAAACTTGGATTC+AGG - chr7.1:4613470-4613489 None:intergenic 30.0%
GGCAGTGATAAACAAAATTA+TGG + chr7.1:4615830-4615849 MS.gene050438:CDS 30.0%
GGTTAGTATTTATAGCCATA+AGG + chr7.1:4614117-4614136 MS.gene050438:intron 30.0%
GTCGTATTGTTCTTAATGAA+GGG + chr7.1:4614440-4614459 MS.gene050438:intron 30.0%
TAGTATTTATAGCCATAAGG+GGG + chr7.1:4614120-4614139 MS.gene050438:intron 30.0%
TATGATAAGACCATTACCAT+TGG + chr7.1:4615587-4615606 MS.gene050438:intron 30.0%
TTATTTCCAGCAAAAGATGT+TGG - chr7.1:4615904-4615923 None:intergenic 30.0%
TTCTTGACATTGTTTACAAG+TGG + chr7.1:4613739-4613758 MS.gene050438:intron 30.0%
! ATAGAGCACTAAATTTAGGT+CGG - chr7.1:4614948-4614967 None:intergenic 30.0%
! GTGAATAGAGCACTAAATTT+AGG - chr7.1:4614952-4614971 None:intergenic 30.0%
! TGATGGCAAAATTTTCTGTA+AGG + chr7.1:4615878-4615897 MS.gene050438:intron 30.0%
! TTCAATAGATTTTCAGCAGT+TGG + chr7.1:4614550-4614569 MS.gene050438:intron 30.0%
! TTTCTTGTTTGAACATGAAC+AGG + chr7.1:4613582-4613601 MS.gene050438:intron 30.0%
!! AATAATTGGTTTGGTCAATG+CGG + chr7.1:4614735-4614754 MS.gene050438:intron 30.0%
!! ATTTTTCCTTCATTTGGGAT+TGG + chr7.1:4615232-4615251 MS.gene050438:intron 30.0%
!! GTAAAGCACAAACTTTTTCT+TGG + chr7.1:4615563-4615582 MS.gene050438:intron 30.0%
!! TTGAAGGGTTTGTTGAAAAT+GGG + chr7.1:4614829-4614848 MS.gene050438:intron 30.0%
!! TTTGAAGGGTTTGTTGAAAA+TGG + chr7.1:4614828-4614847 MS.gene050438:intron 30.0%
!!! AAGGTTTTGAGCTCTAATTT+TGG - chr7.1:4613355-4613374 None:intergenic 30.0%
!!! AGGTTTTGAGCTCTAATTTT+GGG - chr7.1:4613354-4613373 None:intergenic 30.0%
!!! GTTTTTTTGGCTAGATCTAT+TGG + chr7.1:4615535-4615554 MS.gene050438:intron 30.0%
AAACAATGTCAAGAAACCAC+AGG - chr7.1:4613734-4613753 None:intergenic 35.0%
ACCAATTATTCGAGAGGTAA+AGG - chr7.1:4614725-4614744 None:intergenic 35.0%
ACCTTTACCTCTCGAATAAT+TGG + chr7.1:4614721-4614740 MS.gene050438:intron 35.0%
ACTAGGATAGGATAACTATC+AGG + chr7.1:4614175-4614194 MS.gene050438:intron 35.0%
CAGACTAGGTTAATCTGTTT+AGG + chr7.1:4614065-4614084 MS.gene050438:intron 35.0%
CTAGGATAGGATAACTATCA+GGG + chr7.1:4614176-4614195 MS.gene050438:intron 35.0%
GATGAACATAGCAATAGGAA+AGG - chr7.1:4613391-4613410 None:intergenic 35.0%
GGCTTCAACTTTGTAAAACT+TGG - chr7.1:4613477-4613496 None:intergenic 35.0%
GGTCGTATTGTTCTTAATGA+AGG + chr7.1:4614439-4614458 MS.gene050438:intron 35.0%
TACAAACCAATCCCAAATGA+AGG - chr7.1:4615241-4615260 None:intergenic 35.0%
TACCTCTCGAATAATTGGTT+TGG + chr7.1:4614726-4614745 MS.gene050438:intron 35.0%
TCATTAAGAACAATACGACC+TGG - chr7.1:4614439-4614458 None:intergenic 35.0%
TGAATGGAATCAATTTGGAC+CGG - chr7.1:4614491-4614510 None:intergenic 35.0%
TGAGTACGATTTATCAGACT+AGG + chr7.1:4614051-4614070 MS.gene050438:intron 35.0%
TTGACATTGTTTACAAGTGG+TGG + chr7.1:4613742-4613761 MS.gene050438:intron 35.0%
TTGGATAAACCCTCTATTCT+AGG + chr7.1:4614143-4614162 MS.gene050438:intron 35.0%
TTGTTGAAAATGGGAATTCG+TGG + chr7.1:4614838-4614857 MS.gene050438:CDS 35.0%
! AGAGTGTTATAACCTGAGAA+TGG - chr7.1:4613498-4613517 None:intergenic 35.0%
! TGACATTTGGTAGTAATCAC+TGG + chr7.1:4615415-4615434 MS.gene050438:intron 35.0%
!! TGCTTCTAGAATATGCTCAT+TGG + chr7.1:4614207-4614226 MS.gene050438:intron 35.0%
!! TTGGGATTGGTTTGTATACT+TGG + chr7.1:4615245-4615264 MS.gene050438:intron 35.0%
!!! TCATGCATTTTTTCAGGTTG+AGG + chr7.1:4615809-4615828 MS.gene050438:intron 35.0%
!!! TTGGGTCTTCTCAGTTTTTT+TGG + chr7.1:4615522-4615541 MS.gene050438:intron 35.0%
AAAAAGAGAGAGACGCTGAA+TGG - chr7.1:4614507-4614526 None:intergenic 40.0%
AACGTAGGAACCAATGGTAA+TGG - chr7.1:4615600-4615619 None:intergenic 40.0%
AACTAAGCGCCTAGAATAGA+GGG - chr7.1:4614155-4614174 None:intergenic 40.0%
AAGAAGCAACGGAAATGCTT+CGG + chr7.1:4613323-4613342 MS.gene050438:CDS 40.0%
AAGCATTTCCGTTGCTTCTT+AGG - chr7.1:4613323-4613342 None:intergenic 40.0%
AATAGTGGTGAGAAAAGACC+AGG + chr7.1:4615387-4615406 MS.gene050438:CDS 40.0%
AATGTGGTCCTAAGAAGCAA+CGG + chr7.1:4613312-4613331 MS.gene050438:CDS 40.0%
ACAAAGTTGAAGCCATTCTC+AGG + chr7.1:4613483-4613502 MS.gene050438:CDS 40.0%
ACATAAAACACGGCTGAAGT+TGG - chr7.1:4615168-4615187 None:intergenic 40.0%
AGAGAATTCACTGGAGCAAA+TGG - chr7.1:4616148-4616167 None:intergenic 40.0%
AGATTCTTCTCATCGCAATG+TGG + chr7.1:4613296-4613315 MS.gene050438:CDS 40.0%
AGTATATTAGCAGAAGGCCA+AGG - chr7.1:4614790-4614809 None:intergenic 40.0%
ATAGGAAAGGAAATCGAACC+AGG - chr7.1:4613378-4613397 None:intergenic 40.0%
ATGACGCTGAAGCTTGAAAA+AGG - chr7.1:4613261-4613280 None:intergenic 40.0%
ATTAGAGCTCAAAACCTTCC+TGG + chr7.1:4613357-4613376 MS.gene050438:CDS 40.0%
ATTCTAGGCGCTTAGTTACT+AGG + chr7.1:4614158-4614177 MS.gene050438:intron 40.0%
ATTTATAGCCATAAGGGGGT+TGG + chr7.1:4614124-4614143 MS.gene050438:intron 40.0%
CACCACTGAACTGAAGAAAA+CGG - chr7.1:4615696-4615715 None:intergenic 40.0%
CATAAAACACGGCTGAAGTT+GGG - chr7.1:4615167-4615186 None:intergenic 40.0%
GAAGAATACACCATCAGTGA+AGG - chr7.1:4615317-4615336 None:intergenic 40.0%
GAATGGAATCAATTTGGACC+GGG - chr7.1:4614490-4614509 None:intergenic 40.0%
GACCAAACCAATTATTCGAG+AGG - chr7.1:4614731-4614750 None:intergenic 40.0%
GACGCTGAATGGAATCAATT+TGG - chr7.1:4614496-4614515 None:intergenic 40.0%
GATGTAATAAGAATCCGCAC+AGG + chr7.1:4616119-4616138 MS.gene050438:CDS 40.0%
GTATATTAGCAGAAGGCCAA+GGG - chr7.1:4614789-4614808 None:intergenic 40.0%
GTATTACCGAAGAAACCTGA+GGG - chr7.1:4613619-4613638 None:intergenic 40.0%
GTCACTGTATCTGATGTCAA+GGG + chr7.1:4614862-4614881 MS.gene050438:CDS 40.0%
GTCATCTATGAGTTCAGAAG+AGG - chr7.1:4615628-4615647 None:intergenic 40.0%
TAACCTTGAGAGCTTTCTCA+AGG - chr7.1:4614102-4614121 None:intergenic 40.0%
TAACTAAGCGCCTAGAATAG+AGG - chr7.1:4614156-4614175 None:intergenic 40.0%
TCACTGTATCTGATGTCAAG+GGG + chr7.1:4614863-4614882 MS.gene050438:CDS 40.0%
TGTATTACCGAAGAAACCTG+AGG - chr7.1:4613620-4613639 None:intergenic 40.0%
TGTCACTGTATCTGATGTCA+AGG + chr7.1:4614861-4614880 MS.gene050438:CDS 40.0%
TTCAAACCGTTGAACACGTT+CGG - chr7.1:4613213-4613232 None:intergenic 40.0%
! AACCGTTTTCTTCAGTTCAG+TGG + chr7.1:4615691-4615710 MS.gene050438:intron 40.0%
! AATGGGTTCATTACCCTCTT+GGG + chr7.1:4614652-4614671 MS.gene050438:intron 40.0%
! ACTGATGGTGTATTCTTCAC+AGG + chr7.1:4615319-4615338 MS.gene050438:intron 40.0%
! CGAAGTGCTTTAGTCTAGAT+AGG + chr7.1:4614375-4614394 MS.gene050438:intron 40.0%
! TATTCGAGAGGTAAAGGTAC+TGG - chr7.1:4614719-4614738 None:intergenic 40.0%
!! ATTCGAGAGGTAAAGGTACT+GGG - chr7.1:4614718-4614737 None:intergenic 40.0%
ACATCCTTGTCCTTCACTGA+TGG + chr7.1:4615304-4615323 MS.gene050438:intron 45.0%
ACCATAAGCGCCCTTCTAAA+GGG - chr7.1:4614269-4614288 None:intergenic 45.0%
AGCTAAGGCGACGTCTTTAT+AGG - chr7.1:4614238-4614257 None:intergenic 45.0%
AGGACACAACGCCATTCATA+AGG - chr7.1:4614301-4614320 None:intergenic 45.0%
AGGCGCTTAGTTACTAGGAT+AGG + chr7.1:4614163-4614182 MS.gene050438:intron 45.0%
ATGCCTTGAGAAAGCTCTCA+AGG + chr7.1:4614096-4614115 MS.gene050438:intron 45.0%
ATGGCGTTGTGTCCTTTATC+CGG + chr7.1:4614306-4614325 MS.gene050438:intron 45.0%
ATTATGGAGACGGCAAGAAC+TGG + chr7.1:4615846-4615865 MS.gene050438:CDS 45.0%
CTACCAAATGTCAACACACC+TGG - chr7.1:4615408-4615427 None:intergenic 45.0%
GAAAGGAAATCGAACCAGGA+AGG - chr7.1:4613374-4613393 None:intergenic 45.0%
GAGAATCCCTCAGGTTTCTT+CGG + chr7.1:4613610-4613629 MS.gene050438:CDS 45.0%
GCTGAAAACGTAGGAACCAA+TGG - chr7.1:4615606-4615625 None:intergenic 45.0%
GGACACAACGCCATTCATAA+GGG - chr7.1:4614300-4614319 None:intergenic 45.0%
GTATCTGATGTCAAGGGGTT+TGG + chr7.1:4614868-4614887 MS.gene050438:CDS 45.0%
GTCACTTGAGCCCTTATGAA+TGG + chr7.1:4614287-4614306 MS.gene050438:intron 45.0%
GTTTGAACATGAACAGGCCA+TGG + chr7.1:4613588-4613607 MS.gene050438:intron 45.0%
TACACCATCAGTGAAGGACA+AGG - chr7.1:4615311-4615330 None:intergenic 45.0%
TCAGAAGAGGCTGAAAACGT+AGG - chr7.1:4615615-4615634 None:intergenic 45.0%
TGCATTGTCTTTGATGCCTG+TGG + chr7.1:4613715-4613734 MS.gene050438:intron 45.0%
TTATGGAGACGGCAAGAACT+GGG + chr7.1:4615847-4615866 MS.gene050438:CDS 45.0%
TTCACGTGTTTCCCTTGCTT+CGG + chr7.1:4614407-4614426 MS.gene050438:intron 45.0%
TTGAGAGCTTTCTCAAGGCA+TGG - chr7.1:4614097-4614116 None:intergenic 45.0%
! AGACCAGGTGTGTTGACATT+TGG + chr7.1:4615402-4615421 MS.gene050438:intron 45.0%
! GAATGGGTTCATTACCCTCT+TGG + chr7.1:4614651-4614670 MS.gene050438:intron 45.0%
! GTAAGGCCAACATCTTTTGC+TGG + chr7.1:4615895-4615914 MS.gene050438:intron 45.0%
! TTTTTCATCCAGGAAGCCCT+TGG + chr7.1:4614770-4614789 MS.gene050438:intron 45.0%
!! TTCGAGAGGTAAAGGTACTG+GGG - chr7.1:4614717-4614736 None:intergenic 45.0%
!! AAAAAAAAAAAATATGAAAA+AGG - chr7.1:4613647-4613666 None:intergenic 5.0%
AAAACACGGCTGAAGTTGGG+TGG - chr7.1:4615164-4615183 None:intergenic 50.0%
ACGAATTCTCAGGTGAGCGT+GGG + chr7.1:4616225-4616244 MS.gene050438:intron 50.0%
AGAACAATACGACCTGGAGC+AGG - chr7.1:4614433-4614452 None:intergenic 50.0%
AGAACTGGGGAGATTGGTGA+TGG + chr7.1:4615861-4615880 MS.gene050438:CDS 50.0%
AGCGCACAAATTTAGGCCTG+TGG + chr7.1:4615138-4615157 MS.gene050438:intron 50.0%
AGCGTCATTCGCAAGCGTTT+CGG + chr7.1:4613273-4613292 MS.gene050438:CDS 50.0%
CAATTTGGACCGGGAAAACC+CGG - chr7.1:4614481-4614500 None:intergenic 50.0%
GAAACCTGAGGGATTCTCCA+TGG - chr7.1:4613608-4613627 None:intergenic 50.0%
GACCATAAGCGCCCTTCTAA+AGG - chr7.1:4614270-4614289 None:intergenic 50.0%
GCGAAACCGAACGTGTTCAA+CGG + chr7.1:4613204-4613223 MS.gene050438:CDS 50.0%
GGAGCAAATGGTTACCTGTG+CGG - chr7.1:4616136-4616155 None:intergenic 50.0%
GGGTTTATCCAACCCCCTTA+TGG - chr7.1:4614135-4614154 None:intergenic 50.0%
TAAAGGGCCGAAGCAAGCTA+AGG - chr7.1:4614253-4614272 None:intergenic 50.0%
TACGAATTCTCAGGTGAGCG+TGG + chr7.1:4616224-4616243 MS.gene050438:intron 50.0%
TATGGAGACGGCAAGAACTG+GGG + chr7.1:4615848-4615867 MS.gene050438:CDS 50.0%
TCATGGATCTCGTCCCAAGA+GGG - chr7.1:4614668-4614687 None:intergenic 50.0%
TGGCGTTGTGTCCTTTATCC+GGG + chr7.1:4614307-4614326 MS.gene050438:intron 50.0%
! CTTGCTTCGGCCCTTTAGAA+GGG + chr7.1:4614256-4614275 MS.gene050438:intron 50.0%
! GTCCTTTATCCGGGTTTTCC+CGG + chr7.1:4614316-4614335 MS.gene050438:intron 50.0%
AAGCACTTCGCCTTGTCCCA+AGG - chr7.1:4614365-4614384 None:intergenic 55.0%
ACGGCAAGAACTGGGGAGAT+TGG + chr7.1:4615855-4615874 MS.gene050438:CDS 55.0%
CACCGGGAAAACCCGGATAA+AGG - chr7.1:4614321-4614340 None:intergenic 55.0%
CGAATTCTCAGGTGAGCGTG+GGG + chr7.1:4616226-4616245 MS.gene050438:intron 55.0%
CTCAGGGTGGCTCAAAAGAG+AGG + chr7.1:4614893-4614912 MS.gene050438:CDS 55.0%
GAGAGGCAGGGAGGTAAGTA+CGG + chr7.1:4614910-4614929 MS.gene050438:intron 55.0%
GCTTGCTTCGGCCCTTTAGA+AGG + chr7.1:4614255-4614274 MS.gene050438:intron 55.0%
GGTGGCTCAAAAGAGAGGCA+GGG + chr7.1:4614898-4614917 MS.gene050438:CDS 55.0%
GTCATGGATCTCGTCCCAAG+AGG - chr7.1:4614669-4614688 None:intergenic 55.0%
TTGTCCCAAGGCTCGTGCTT+GGG - chr7.1:4614353-4614372 None:intergenic 55.0%
!! GACGTCGCCTTAGCTTGCTT+CGG + chr7.1:4614243-4614262 MS.gene050438:intron 55.0%
!! GCCCTTTAGAAGGGCGCTTA+TGG + chr7.1:4614265-4614284 MS.gene050438:intron 55.0%
!! GTCAAGGGGTTTGGTGCTCA+GGG + chr7.1:4614877-4614896 MS.gene050438:CDS 55.0%
!! TGTCAAGGGGTTTGGTGCTC+AGG + chr7.1:4614876-4614895 MS.gene050438:CDS 55.0%
ACCGGGAAAACCCGGATACG+GGG - chr7.1:4614473-4614492 None:intergenic 60.0%
AGCAGGCTGAGAGGATGGCT+GGG + chr7.1:4616249-4616268 MS.gene050438:CDS 60.0%
CAAGCACGAGCCTTGGGACA+AGG + chr7.1:4614352-4614371 MS.gene050438:intron 60.0%
CAGGCCATGGAGAATCCCTC+AGG + chr7.1:4613601-4613620 MS.gene050438:intron 60.0%
CTTGTCCCAAGGCTCGTGCT+TGG - chr7.1:4614354-4614373 None:intergenic 60.0%
GACCGGGAAAACCCGGATAC+GGG - chr7.1:4614474-4614493 None:intergenic 60.0%
GCTTGTGCACCGGGAAAACC+CGG - chr7.1:4614328-4614347 None:intergenic 60.0%
GGACCGGGAAAACCCGGATA+CGG - chr7.1:4614475-4614494 None:intergenic 60.0%
GGCTCAAAAGAGAGGCAGGG+AGG + chr7.1:4614901-4614920 MS.gene050438:CDS 60.0%
GGGTGGCTCAAAAGAGAGGC+AGG + chr7.1:4614897-4614916 MS.gene050438:CDS 60.0%
TGTCCCAAGGCTCGTGCTTG+GGG - chr7.1:4614352-4614371 None:intergenic 60.0%
!! AAGGGGTTTGGTGCTCAGGG+TGG + chr7.1:4614880-4614899 MS.gene050438:CDS 60.0%
ACCTGGAGCAGGCCGAAGCA+AGG - chr7.1:4614422-4614441 None:intergenic 65.0%
CAGGCTGAGAGGATGGCTGG+GGG + chr7.1:4616251-4616270 MS.gene050438:CDS 65.0%
CCTGGAGCAGGCCGAAGCAA+GGG - chr7.1:4614421-4614440 None:intergenic 65.0%
GAGCAGGCTGAGAGGATGGC+TGG + chr7.1:4616248-4616267 MS.gene050438:CDS 65.0%
GCAGAAGGCCAAGGGCTTCC+TGG - chr7.1:4614781-4614800 None:intergenic 65.0%
GCAGGCTGAGAGGATGGCTG+GGG + chr7.1:4616250-4616269 MS.gene050438:CDS 65.0%
GGCTGAAGTTGGGTGGCCAC+AGG - chr7.1:4615157-4615176 None:intergenic 65.0%
GTCCCAAGGCTCGTGCTTGG+GGG - chr7.1:4614351-4614370 None:intergenic 65.0%
TCCCAAGGCTCGTGCTTGGG+GGG - chr7.1:4614350-4614369 None:intergenic 65.0%
TGCTTGGGGGGCTTGTGCAC+CGG - chr7.1:4614338-4614357 None:intergenic 65.0%
TGGGGAGCAGGCTGAGAGGA+TGG + chr7.1:4616244-4616263 MS.gene050438:CDS 65.0%
! GCCCCGTATCCGGGTTTTCC+CGG + chr7.1:4614469-4614488 MS.gene050438:intron 65.0%
!! AGGGCACTGAGCCCCGTATC+CGG + chr7.1:4614459-4614478 MS.gene050438:intron 65.0%
AGCCCCCCAAGCACGAGCCT+TGG + chr7.1:4614345-4614364 MS.gene050438:intron 70.0%
AGCGTGGGGAGCAGGCTGAG+AGG + chr7.1:4616240-4616259 MS.gene050438:CDS 70.0%
CCCTTGCTTCGGCCTGCTCC+AGG + chr7.1:4614418-4614437 MS.gene050438:intron 70.0%
CTCAGGTGAGCGTGGGGAGC+AGG + chr7.1:4616232-4616251 MS.gene050438:intron 70.0%
GCCCCCCAAGCACGAGCCTT+GGG + chr7.1:4614346-4614365 MS.gene050438:intron 70.0%
GCTTGGGGGGCTTGTGCACC+GGG - chr7.1:4614337-4614356 None:intergenic 70.0%
!! GGGCACTGAGCCCCGTATCC+GGG + chr7.1:4614460-4614479 MS.gene050438:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 4613192 4616298 4613192 ID=MS.gene050438
chr7.1 mRNA 4613192 4616298 4613192 ID=MS.gene050438.t1;Parent=MS.gene050438
chr7.1 exon 4613192 4613378 4613192 ID=MS.gene050438.t1.exon1;Parent=MS.gene050438.t1
chr7.1 CDS 4613192 4613378 4613192 ID=cds.MS.gene050438.t1;Parent=MS.gene050438.t1
chr7.1 exon 4613459 4613504 4613459 ID=MS.gene050438.t1.exon2;Parent=MS.gene050438.t1
chr7.1 CDS 4613459 4613504 4613459 ID=cds.MS.gene050438.t1;Parent=MS.gene050438.t1
chr7.1 exon 4613604 4613631 4613604 ID=MS.gene050438.t1.exon3;Parent=MS.gene050438.t1
chr7.1 CDS 4613604 4613631 4613604 ID=cds.MS.gene050438.t1;Parent=MS.gene050438.t1
chr7.1 exon 4614835 4614922 4614835 ID=MS.gene050438.t1.exon4;Parent=MS.gene050438.t1
chr7.1 CDS 4614835 4614922 4614835 ID=cds.MS.gene050438.t1;Parent=MS.gene050438.t1
chr7.1 exon 4615341 4615408 4615341 ID=MS.gene050438.t1.exon5;Parent=MS.gene050438.t1
chr7.1 CDS 4615341 4615408 4615341 ID=cds.MS.gene050438.t1;Parent=MS.gene050438.t1
chr7.1 exon 4615825 4615894 4615825 ID=MS.gene050438.t1.exon6;Parent=MS.gene050438.t1
chr7.1 CDS 4615825 4615894 4615825 ID=cds.MS.gene050438.t1;Parent=MS.gene050438.t1
chr7.1 exon 4616105 4616140 4616105 ID=MS.gene050438.t1.exon7;Parent=MS.gene050438.t1
chr7.1 CDS 4616105 4616140 4616105 ID=cds.MS.gene050438.t1;Parent=MS.gene050438.t1
chr7.1 exon 4616237 4616298 4616237 ID=MS.gene050438.t1.exon8;Parent=MS.gene050438.t1
chr7.1 CDS 4616237 4616298 4616237 ID=cds.MS.gene050438.t1;Parent=MS.gene050438.t1
Gene Sequence

>MS.gene050438

ATGGCTTTGATTGCGAAACCGAACGTGTTCAACGGTTTGAATTTTAATATCAATGAAACTCAAATTCCTTTTTCAAGCTTCAGCGTCATTCGCAAGCGTTTCGGAGATTCTTCTCATCGCAATGTGGTCCTAAGAAGCAACGGAAATGCTTCGGTTCTTCCCAAAATTAGAGCTCAAAACCTTCCTGGTTCGATTTCCTTTCCTATTGCTATGTTCATCTATATTCATACTCAAATCTTGTTGCTAAATCTTTGATCTCTCTTTTAGACTATGTTCCTGAATCCAAGTTTTACAAAGTTGAAGCCATTCTCAGGTTATAACACTCTTCTTTTGCGTTTTTTTTGTGAAATCATTTGAATTCAGTTCTTTCTTGATGCTTATGTTGTTCAATTTCTTGTTTGAACATGAACAGGCCATGGAGAATCCCTCAGGTTTCTTCGGTAATACATTTTCCTTTTTCATATTTTTTTTTTTTTGCATGTCTAAAGTAGACTGTGATTCTTGTTATTTTCACTAAATCGGATGCATTGTCTTTGATGCCTGTGGTTTCTTGACATTGTTTACAAGTGGTGGTTGACTCATTGCAAATTCAGTTAACTATTATGGTATTTTCTTGACTAAATTCTGTTAGTGTTTTTGGACTGAATTCTGCTTGTTAGTTAGTTAGCCTTAGATTAACAGTGTTAGTTAATTAGTTTCAAAGTCAGTCAATAAATTAATTATTGGCAAAGTCAGTTAATAAATTAATTATTGGCAAAGTCAGTTAACTGTTATGTTAATTAGTTGGCATTTCGTTAGCACACATGCTGTGTATATTAATTATGTTTCTTTGTGAATTCATTCAATTGTGTACTTGCAGTGAGTACGATTTATCAGACTAGGTTAATCTGTTTAGGTCAATGCCATGCCTTGAGAAAGCTCTCAAGGTTAGTATTTATAGCCATAAGGGGGTTGGATAAACCCTCTATTCTAGGCGCTTAGTTACTAGGATAGGATAACTATCAGGGATTCTAGCTGCTTCTAGAATATGCTCATTGGCAGTGCCTATAAAGACGTCGCCTTAGCTTGCTTCGGCCCTTTAGAAGGGCGCTTATGGTCACTTGAGCCCTTATGAATGGCGTTGTGTCCTTTATCCGGGTTTTCCCGGTGCACAAGCCCCCCAAGCACGAGCCTTGGGACAAGGCGAAGTGCTTTAGTCTAGATAGGAGACATGTTTTCACGTGTTTCCCTTGCTTCGGCCTGCTCCAGGTCGTATTGTTCTTAATGAAGGGCACTGAGCCCCGTATCCGGGTTTTCCCGGTCCAAATTGATTCCATTCAGCGTCTCTCTCTTTTTTTCTACTTCCAAAAGGTTTCATTTTCAATAGATTTTCAGCAGTTGGTGCATAAGATTGTGTTATTGCTACAAATACTTTTGTGGTCAAATAAGCAAAAGTATTGCATTAGTTTTATCATTAATAGAATGGGTTCATTACCCTCTTGGGACGAGATCCATGACTTTTGAGTTTGTACTTGTACTTGTACCCCAGTACCTTTACCTCTCGAATAATTGGTTTGGTCAATGCGGCTCATATATGTATTTTTCATCCAGGAAGCCCTTGGCCTTCTGCTAATATACTGAATTTTTTATTGTAAAATTTGAAGGGTTTGTTGAAAATGGGAATTCGTGGTGTCACTGTATCTGATGTCAAGGGGTTTGGTGCTCAGGGTGGCTCAAAAGAGAGGCAGGGAGGTAAGTACGGTGCTGATCTTAACCGACCTAAATTTAGTGCTCTATTCACCCTTGTTAACTTCTAAGACAAATTCATGTTAAGAGTTTGGAGGAGTTTTTGTTATCATCATACATTTTTGAAGTCCATATTTCATCACTAAACTATTTGTTATAGTAAATTTTGTTGAATTTGTGCCTTAAAAAAACACTTGCTCTTTCTTTTTTTACTAAATGTTAGCGCACAAATTTAGGCCTGTGGCCACCCAACTTCAGCCGTGTTTTATGTTTGTAACTTTTGTTCTGTTATATATAATATAGTTCAAGAATTACATTTTTCCTTCATTTGGGATTGGTTTGTATACTTGGTTTTGTGCATATTACGTATAGATCACATGCTCACTTACATCCTTGTCCTTCACTGATGGTGTATTCTTCACAGGCTCTGAATTTTCTGAAGACAATTTTGTTGCCAAAGTTAAAATGGAAATAGTGGTGAGAAAAGACCAGGTGTGTTGACATTTGGTAGTAATCACTGGCATCATGATTTGTGTGCTACAATCTTAAATGCCCAATATTCTAAACAATTAACATGACAATGTTAATTGTTTAGATCTATTGATTTGGGTCTTCTCAGTTTTTTTGGCTAGATCTATTGGTGAGAGTAAAGCACAAACTTTTTCTTGGATATGATAAGACCATTACCATTGGTTCCTACGTTTTCAGCCTCTTCTGAACTCATAGATGACTAGTCACTATTTCAAAGTGTTTGCATTTCAAGAGATTAAACAAAACCGTTTTCTTCAGTTCAGTGGTGTTTGAATTATTTAGTAGTGGTAGTTCGAGTAAAACTTCATACCACTTTTAATTACAAACAAAATATTGCTTTTTGCAGCATATCTAATATATATCATGCATTTTTTCAGGTTGAGGCAGTGATAAACAAAATTATGGAGACGGCAAGAACTGGGGAGATTGGTGATGGCAAAATTTTCTGTAAGGCCAACATCTTTTGCTGGAAATAAATTATACGTCATGGTCTGTTTTGAGCTGATACAAACCTGATATTTTTTATTAGAATCTTTCATAATAAAATAGTTTAAGGAGGGTATAAGAGTTACAGTACAATATCTGAATTCAAAATGTAAAACTACTAAACTCAATTTGGAACTGTATCATATTTCTAATAGAACTTTGATTGTGCAGTGATCCCTGTATCTGATGTAATAAGAATCCGCACAGGTAACCATTTGCTCCAGTGAATTCTCTAAAAACATAAAATGTTAATATTTTTGTGTAGTCAGCATATGTACTCAAGTTTTAAATACGAATTCTCAGGTGAGCGTGGGGAGCAGGCTGAGAGGATGGCTGGGGGACTAACTGACGCGTTGTATGTTTGA

Protein sequence

>MS.gene050438.t1

MALIAKPNVFNGLNFNINETQIPFSSFSVIRKRFGDSSHRNVVLRSNGNASVLPKIRAQNLPDYVPESKFYKVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKMEIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQAERMAGGLTDALYV