Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85157.t1 | XP_003597679.1 | 94.9 | 354 | 10 | 3 | 1 | 347 | 1 | 353 | 5.20E-186 | 660.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85157.t1 | Q7XC57 | 51.2 | 344 | 123 | 11 | 1 | 330 | 1 | 313 | 2.8e-71 | 270.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85157.t1 | G7II01 | 94.9 | 354 | 10 | 3 | 1 | 347 | 1 | 353 | 3.8e-186 | 660.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene85157.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059420 | MS.gene85157 | -0.800953 | 1.13E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85157.t1 | MTR_2g100930 | 95.480 | 354 | 8 | 2 | 1 | 347 | 1 | 353 | 0.0 | 691 |
| MS.gene85157.t1 | MTR_4g100630 | 53.009 | 349 | 128 | 14 | 1 | 336 | 1 | 326 | 4.22e-100 | 298 |
| MS.gene85157.t1 | MTR_6g092540 | 55.233 | 172 | 63 | 4 | 1 | 168 | 1 | 162 | 3.32e-50 | 169 |
| MS.gene85157.t1 | MTR_5g037080 | 50.246 | 203 | 57 | 7 | 1 | 182 | 3 | 182 | 3.23e-48 | 165 |
| MS.gene85157.t1 | MTR_8g101650 | 50.847 | 177 | 65 | 5 | 3 | 168 | 4 | 169 | 2.70e-44 | 154 |
| MS.gene85157.t1 | MTR_4g107230 | 51.534 | 163 | 73 | 5 | 22 | 183 | 6 | 163 | 3.61e-33 | 124 |
| MS.gene85157.t1 | MTR_1g111830 | 61.538 | 91 | 34 | 1 | 97 | 187 | 118 | 207 | 7.45e-33 | 122 |
| MS.gene85157.t1 | MTR_3g462790 | 47.651 | 149 | 60 | 5 | 98 | 245 | 142 | 273 | 2.69e-32 | 123 |
| MS.gene85157.t1 | MTR_4g111975 | 74.286 | 70 | 18 | 0 | 98 | 167 | 133 | 202 | 2.85e-32 | 122 |
| MS.gene85157.t1 | MTR_5g069710 | 73.239 | 71 | 19 | 0 | 98 | 168 | 127 | 197 | 7.69e-32 | 121 |
| MS.gene85157.t1 | MTR_7g067080 | 74.648 | 71 | 18 | 0 | 98 | 168 | 135 | 205 | 4.70e-31 | 119 |
| MS.gene85157.t1 | MTR_5g081860 | 62.222 | 90 | 32 | 1 | 98 | 185 | 120 | 209 | 4.80e-30 | 116 |
| MS.gene85157.t1 | MTR_0036s0260 | 69.118 | 68 | 21 | 0 | 103 | 170 | 28 | 95 | 3.19e-28 | 109 |
| MS.gene85157.t1 | MTR_3g104370 | 42.529 | 174 | 77 | 5 | 1 | 168 | 3 | 159 | 7.13e-28 | 109 |
| MS.gene85157.t1 | MTR_2g090305 | 67.647 | 68 | 22 | 0 | 103 | 170 | 28 | 95 | 7.85e-27 | 105 |
| MS.gene85157.t1 | MTR_8g063600 | 62.195 | 82 | 25 | 2 | 88 | 167 | 95 | 172 | 1.27e-24 | 102 |
| MS.gene85157.t1 | MTR_5g027570 | 45.161 | 93 | 49 | 1 | 99 | 189 | 88 | 180 | 6.20e-21 | 90.5 |
| MS.gene85157.t1 | MTR_5g088010 | 52.113 | 71 | 31 | 1 | 99 | 166 | 56 | 126 | 2.41e-20 | 89.4 |
| MS.gene85157.t1 | MTR_4g015130 | 65.455 | 55 | 19 | 0 | 113 | 167 | 3 | 57 | 6.32e-20 | 83.6 |
| MS.gene85157.t1 | MTR_1g048660 | 54.688 | 64 | 29 | 0 | 104 | 167 | 13 | 76 | 1.17e-19 | 82.8 |
| MS.gene85157.t1 | MTR_5g088060 | 56.923 | 65 | 25 | 1 | 105 | 166 | 274 | 338 | 1.65e-18 | 86.7 |
| MS.gene85157.t1 | MTR_5g488160 | 56.923 | 65 | 25 | 1 | 105 | 166 | 274 | 338 | 1.65e-18 | 86.7 |
| MS.gene85157.t1 | MTR_8g063870 | 53.846 | 65 | 28 | 1 | 105 | 167 | 94 | 158 | 6.28e-18 | 82.8 |
| MS.gene85157.t1 | MTR_5g027550 | 57.895 | 57 | 24 | 0 | 99 | 155 | 73 | 129 | 3.57e-17 | 80.1 |
| MS.gene85157.t1 | MTR_1g033620 | 49.438 | 89 | 37 | 1 | 119 | 207 | 21 | 101 | 5.61e-17 | 79.7 |
| MS.gene85157.t1 | MTR_1g083180 | 53.846 | 65 | 25 | 2 | 105 | 165 | 63 | 126 | 5.03e-14 | 70.1 |
| MS.gene85157.t1 | MTR_5g075760 | 51.562 | 64 | 27 | 2 | 105 | 165 | 107 | 169 | 2.63e-13 | 68.6 |
| MS.gene85157.t1 | MTR_5g075790 | 50.000 | 64 | 28 | 2 | 105 | 165 | 115 | 177 | 7.74e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85157.t1 | AT3G16350 | 54.476 | 391 | 130 | 14 | 1 | 347 | 1 | 387 | 2.51e-108 | 322 |
| MS.gene85157.t1 | AT5G47390 | 48.021 | 379 | 137 | 14 | 1 | 338 | 1 | 360 | 9.15e-90 | 274 |
| MS.gene85157.t1 | AT1G70000 | 54.000 | 200 | 63 | 8 | 1 | 189 | 1 | 182 | 1.36e-51 | 172 |
| MS.gene85157.t1 | AT1G70000 | 54.000 | 200 | 63 | 8 | 1 | 189 | 1 | 182 | 1.36e-51 | 172 |
| MS.gene85157.t1 | AT5G61620 | 39.370 | 254 | 116 | 8 | 1 | 247 | 8 | 230 | 7.67e-48 | 164 |
| MS.gene85157.t1 | AT5G56840 | 51.479 | 169 | 69 | 4 | 1 | 168 | 1 | 157 | 3.13e-47 | 160 |
| MS.gene85157.t1 | AT2G38090 | 65.625 | 96 | 33 | 0 | 80 | 175 | 118 | 213 | 4.24e-35 | 130 |
| MS.gene85157.t1 | AT5G58900 | 74.286 | 70 | 18 | 0 | 98 | 167 | 136 | 205 | 3.24e-32 | 122 |
| MS.gene85157.t1 | AT1G49010 | 74.286 | 70 | 18 | 0 | 98 | 167 | 129 | 198 | 9.00e-32 | 121 |
| MS.gene85157.t1 | AT1G74840 | 48.503 | 167 | 75 | 6 | 29 | 192 | 24 | 182 | 4.75e-30 | 115 |
| MS.gene85157.t1 | AT5G08520 | 70.000 | 70 | 21 | 0 | 98 | 167 | 113 | 182 | 7.22e-30 | 116 |
| MS.gene85157.t1 | AT5G04760 | 65.278 | 72 | 25 | 0 | 97 | 168 | 93 | 164 | 1.44e-29 | 113 |
| MS.gene85157.t1 | AT1G74840 | 48.503 | 167 | 75 | 6 | 29 | 192 | 24 | 182 | 1.66e-29 | 114 |
| MS.gene85157.t1 | AT3G11280 | 71.429 | 70 | 20 | 0 | 98 | 167 | 122 | 191 | 1.19e-28 | 112 |
| MS.gene85157.t1 | AT3G11280 | 71.429 | 70 | 20 | 0 | 98 | 167 | 122 | 191 | 1.19e-28 | 112 |
| MS.gene85157.t1 | AT5G01200 | 70.000 | 70 | 21 | 0 | 98 | 167 | 141 | 210 | 1.99e-28 | 111 |
| MS.gene85157.t1 | AT1G19000 | 46.629 | 178 | 66 | 8 | 29 | 191 | 22 | 185 | 5.36e-28 | 110 |
| MS.gene85157.t1 | AT1G19000 | 46.629 | 178 | 66 | 8 | 29 | 191 | 22 | 185 | 5.36e-28 | 110 |
| MS.gene85157.t1 | AT5G05790 | 68.571 | 70 | 22 | 0 | 98 | 167 | 126 | 195 | 6.95e-27 | 107 |
| MS.gene85157.t1 | AT5G05790 | 68.571 | 70 | 22 | 0 | 98 | 167 | 126 | 195 | 6.95e-27 | 107 |
| MS.gene85157.t1 | AT4G09450 | 51.613 | 93 | 45 | 0 | 80 | 172 | 68 | 160 | 3.30e-24 | 98.6 |
| MS.gene85157.t1 | AT3G10580 | 58.667 | 75 | 29 | 1 | 94 | 168 | 86 | 158 | 2.75e-23 | 97.4 |
| MS.gene85157.t1 | AT3G10580 | 58.667 | 75 | 29 | 1 | 94 | 168 | 86 | 158 | 3.90e-23 | 97.8 |
| MS.gene85157.t1 | AT5G23650 | 53.425 | 73 | 34 | 0 | 96 | 168 | 113 | 185 | 2.84e-20 | 90.5 |
| MS.gene85157.t1 | AT3G10590 | 45.349 | 86 | 44 | 2 | 85 | 168 | 91 | 175 | 1.34e-16 | 77.8 |
Find 108 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCTCCTTTGCCTAGCTTT+TGG | 0.260546 | 2.4:-3587781 | None:intergenic |
| GAAGCGCCGCCGCTGCCGGC+GGG | 0.281178 | 2.4:+3585339 | MS.gene85157:CDS |
| CATCAAGAAAAGTGCCAGTA+TGG | 0.298362 | 2.4:+3585400 | MS.gene85157:CDS |
| GGAAGAACATAGATTGTTCT+TGG | 0.306357 | 2.4:+3587751 | MS.gene85157:CDS |
| GAAAATGAGGCAGGTAAATA+AGG | 0.320772 | 2.4:-3588698 | None:intergenic |
| GATGAAGAGCAGCGAGGTTT+AGG | 0.321604 | 2.4:-3585427 | None:intergenic |
| TCGAGAAGCGCCGCCGCTGC+CGG | 0.338043 | 2.4:+3585335 | MS.gene85157:CDS |
| GGAAGTAGTACTTGCTCTTC+TGG | 0.338570 | 2.4:-3588503 | None:intergenic |
| TCCTTTGGAATGACTGGTAT+TGG | 0.340477 | 2.4:-3588794 | None:intergenic |
| CCCCTTTCCTTGAAGTTGTT+AGG | 0.350389 | 2.4:+3588896 | MS.gene85157:CDS |
| TCTGGCATCGAAGTTGAATC+TGG | 0.363477 | 2.4:-3588485 | None:intergenic |
| TGGAATGCTGATTGCCTTGA+GGG | 0.363738 | 2.4:-3588923 | None:intergenic |
| CTTCACCCCGCCGGCAGCGG+CGG | 0.373251 | 2.4:-3585345 | None:intergenic |
| TCAACATTGACAGGTTCCTT+TGG | 0.380571 | 2.4:-3588809 | None:intergenic |
| TTTAGATCAGAACCGCTAAC+TGG | 0.381028 | 2.4:-3588956 | None:intergenic |
| TCAAAGGGAGCTCCAATTGA+TGG | 0.384606 | 2.4:-3588728 | None:intergenic |
| TGATCCCATTGTAGTCTCAT+TGG | 0.391511 | 2.4:-3588639 | None:intergenic |
| GAATGTCTCATCTGAGCATT+GGG | 0.393213 | 2.4:+3588843 | MS.gene85157:CDS |
| TCCTTTGTTGACTTCTTCAA+AGG | 0.400771 | 2.4:-3588744 | None:intergenic |
| AGAAGCGCCGCCGCTGCCGG+CGG | 0.417090 | 2.4:+3585338 | MS.gene85157:CDS |
| AAAGCCTCAAACTGCTTGAA+TGG | 0.420085 | 2.4:-3588996 | None:intergenic |
| AAGCGCCGCCGCTGCCGGCG+GGG | 0.428113 | 2.4:+3585340 | MS.gene85157:CDS |
| GAGACTACAATGGGATCAAA+TGG | 0.433570 | 2.4:+3588644 | MS.gene85157:CDS |
| CCTTTGTTGACTTCTTCAAA+GGG | 0.434334 | 2.4:-3588743 | None:intergenic |
| CGGTTCAAAACAAGGTGAAC+CGG | 0.438885 | 2.4:-3585474 | None:intergenic |
| TCCTAACAACTTCAAGGAAA+GGG | 0.440079 | 2.4:-3588897 | None:intergenic |
| TCTTCAGATGTAGCTTCCAT+TGG | 0.445737 | 2.4:-3588602 | None:intergenic |
| AAAAGCTAGGCAAAGGAGAC+TGG | 0.448710 | 2.4:+3587783 | MS.gene85157:CDS |
| GGGAAGAATCCTTGCGTCAT+TGG | 0.453748 | 2.4:-3588674 | None:intergenic |
| ACAGGTTCCTTTGGAATGAC+TGG | 0.453964 | 2.4:-3588800 | None:intergenic |
| GAGGTTTAGGTTCCCCATAC+TGG | 0.455596 | 2.4:-3585414 | None:intergenic |
| AAAGCAGAAGAAGCATGAAC+CGG | 0.455984 | 2.4:-3585530 | None:intergenic |
| AAGCTTCACCCCGCCGGCAG+CGG | 0.457103 | 2.4:-3585348 | None:intergenic |
| GAACATAGATTGTTCTTGGT+TGG | 0.461435 | 2.4:+3587755 | MS.gene85157:CDS |
| CATGACTTGCTACTTGAGTA+GGG | 0.462555 | 2.4:-3587841 | None:intergenic |
| AACGCCATTCAAGCAGTTTG+AGG | 0.463617 | 2.4:+3588992 | MS.gene85157:CDS |
| GCATGACTTGCTACTTGAGT+AGG | 0.464793 | 2.4:-3587842 | None:intergenic |
| GAATGAATACTGACCACATC+AGG | 0.481403 | 2.4:-3587935 | None:intergenic |
| TTTCTTGATGATTGATCCAT+CGG | 0.482732 | 2.4:-3585387 | None:intergenic |
| AGCTCCAATTGATGGCCATA+TGG | 0.483931 | 2.4:-3588720 | None:intergenic |
| GGGCTCTCCTAACAACTTCA+AGG | 0.485368 | 2.4:-3588903 | None:intergenic |
| TCATCAGATAAATAACCATC+CGG | 0.488271 | 2.4:-3585506 | None:intergenic |
| CATGCAAATGCTCCAGTTAG+CGG | 0.489459 | 2.4:+3588944 | MS.gene85157:CDS |
| ACAAGTTCATCAACATTGAC+AGG | 0.494176 | 2.4:-3588818 | None:intergenic |
| ACGGACATGTCCGTGAGTTA+TGG | 0.495840 | 2.4:-3585313 | None:intergenic |
| TCTTCTTCGCCGCTGAACCC+CGG | 0.498426 | 2.4:+3585455 | MS.gene85157:CDS |
| GAGAACTCACAACCTTGTAA+TGG | 0.500646 | 2.4:+3588533 | MS.gene85157:CDS |
| ATCTGAGCATTGGGGAAACA+CGG | 0.503897 | 2.4:+3588852 | MS.gene85157:CDS |
| TTTCGACATGGCTCCTGATG+TGG | 0.516858 | 2.4:+3587922 | MS.gene85157:CDS |
| CCTAACAACTTCAAGGAAAG+GGG | 0.517543 | 2.4:-3588896 | None:intergenic |
| GCAGCGGCGGCGCTTCTCGA+CGG | 0.517789 | 2.4:-3585332 | None:intergenic |
| CTATGTTCTTCCTCAGTCCA+TGG | 0.518156 | 2.4:-3587740 | None:intergenic |
| GGTTCAAAACAAGGTGAACC+GGG | 0.521484 | 2.4:-3585473 | None:intergenic |
| TGATGGCCATATGGAAAATG+AGG | 0.522407 | 2.4:-3588711 | None:intergenic |
| AGGAGAGACATCGTATCATC+AGG | 0.522529 | 2.4:+3588763 | MS.gene85157:CDS |
| AGGAGCCATGTCGAAAAGAC+TGG | 0.523291 | 2.4:-3587915 | None:intergenic |
| ATCAAGAAAAGTGCCAGTAT+GGG | 0.525026 | 2.4:+3585401 | MS.gene85157:CDS |
| CGCTAACTGGAGCATTTGCA+TGG | 0.525907 | 2.4:-3588943 | None:intergenic |
| GGAATGTCTCATCTGAGCAT+TGG | 0.531337 | 2.4:+3588842 | MS.gene85157:CDS |
| TTGGTTGGTCTCCAAAAGCT+AGG | 0.538073 | 2.4:+3587770 | MS.gene85157:CDS |
| ATCTGAAGAAAATGTAGAAG+AGG | 0.540720 | 2.4:+3588616 | MS.gene85157:CDS |
| ATGAGGCAGGTAAATAAGGT+GGG | 0.541274 | 2.4:-3588694 | None:intergenic |
| CTCCTAACAACTTCAAGGAA+AGG | 0.542864 | 2.4:-3588898 | None:intergenic |
| TCCTGGTAGCATTACTCTGT+CGG | 0.543171 | 2.4:-3587880 | None:intergenic |
| GGCCATATGGAAAATGAGGC+AGG | 0.543383 | 2.4:-3588707 | None:intergenic |
| ATGGAATGCTGATTGCCTTG+AGG | 0.546697 | 2.4:-3588924 | None:intergenic |
| GGCGGCGATTCGTGATGACT+CGG | 0.556358 | 2.4:+3585264 | None:intergenic |
| CAAGTCAGAATATGAACCAA+TGG | 0.562551 | 2.4:+3588586 | MS.gene85157:CDS |
| CAAGGTGAACCGGGGTTCAG+CGG | 0.568397 | 2.4:-3585464 | None:intergenic |
| CAAGGTTGTGAGTTCTCAGA+AGG | 0.569930 | 2.4:-3588527 | None:intergenic |
| GAATGACTGGTATTGGCTTG+AGG | 0.572196 | 2.4:-3588787 | None:intergenic |
| AAATAACCATCCGGGTCATG+CGG | 0.572298 | 2.4:-3585497 | None:intergenic |
| GAGGCCAATGAGACTACAAT+GGG | 0.576022 | 2.4:+3588635 | MS.gene85157:CDS |
| ACTGGAACGTCTCTTCCTCC+TGG | 0.576071 | 2.4:-3587897 | None:intergenic |
| TGGTTATTTATCTGATGACC+CGG | 0.576739 | 2.4:+3585511 | MS.gene85157:CDS |
| AGTTGTTAGGAGAGCCCTCA+AGG | 0.579322 | 2.4:+3588909 | MS.gene85157:CDS |
| AAGCAGAAGAAGCATGAACC+GGG | 0.580723 | 2.4:-3585529 | None:intergenic |
| TCTGAGCATTGGGGAAACAC+GGG | 0.582582 | 2.4:+3588853 | MS.gene85157:CDS |
| AATGAGGCAGGTAAATAAGG+TGG | 0.582975 | 2.4:-3588695 | None:intergenic |
| TCATGCGGCGGTTCAAAACA+AGG | 0.584178 | 2.4:-3585482 | None:intergenic |
| GTCAATGTTGATGAACTTGT+GGG | 0.584457 | 2.4:+3588821 | MS.gene85157:CDS |
| TTTGGTGTTAGATTAACCGA+TGG | 0.592133 | 2.4:+3585371 | MS.gene85157:CDS |
| TGTCAATGTTGATGAACTTG+TGG | 0.593101 | 2.4:+3588820 | MS.gene85157:CDS |
| TGCTCTCACTGCAGCAACAA+CGG | 0.601199 | 2.4:+3585290 | MS.gene85157:CDS |
| GGTTGTGAGTTCTCAGAAGG+TGG | 0.602477 | 2.4:-3588524 | None:intergenic |
| GAACCGCCGCATGACCCGGA+TGG | 0.608961 | 2.4:+3585491 | MS.gene85157:CDS |
| GGTCTCCAAAAGCTAGGCAA+AGG | 0.614877 | 2.4:+3587776 | MS.gene85157:CDS |
| AGAGGCCAATGAGACTACAA+TGG | 0.616526 | 2.4:+3588634 | MS.gene85157:CDS |
| GCAACAACGGCCATAACTCA+CGG | 0.617037 | 2.4:+3585303 | MS.gene85157:CDS |
| CTAACAACTTCAAGGAAAGG+GGG | 0.629370 | 2.4:-3588895 | None:intergenic |
| CTAGGCAAAGGAGACTGGCG+AGG | 0.631792 | 2.4:+3587788 | MS.gene85157:CDS |
| TCAAGAAAAGTGCCAGTATG+GGG | 0.632856 | 2.4:+3585402 | MS.gene85157:CDS |
| CCCTTTGAAGAAGTCAACAA+AGG | 0.636313 | 2.4:+3588743 | MS.gene85157:CDS |
| TTGAGAGACAGATTTAGTGA+TGG | 0.636747 | 2.4:-3588566 | None:intergenic |
| TAACCATCCGGGTCATGCGG+CGG | 0.638437 | 2.4:-3585494 | None:intergenic |
| CATCAGATAAATAACCATCC+GGG | 0.638735 | 2.4:-3585505 | None:intergenic |
| TCCGACAGAGTAATGCTACC+AGG | 0.640061 | 2.4:+3587879 | MS.gene85157:CDS |
| GCCAATACCAGTCATTCCAA+AGG | 0.641238 | 2.4:+3588793 | MS.gene85157:CDS |
| ATGACTTGCTACTTGAGTAG+GGG | 0.646346 | 2.4:-3587840 | None:intergenic |
| GGATTCACACCAATGACGCA+AGG | 0.652345 | 2.4:+3588665 | MS.gene85157:CDS |
| TAGGCAAAGGAGACTGGCGA+GGG | 0.653435 | 2.4:+3587789 | MS.gene85157:CDS |
| TAACAACTTCAAGGAAAGGG+GGG | 0.654354 | 2.4:-3588894 | None:intergenic |
| TTTAGGTGTTCCATGGACTG+AGG | 0.681364 | 2.4:+3587730 | MS.gene85157:intron |
| AGCGGTTCTGATCTAAACAG+TGG | 0.708017 | 2.4:+3588962 | MS.gene85157:CDS |
| GTTCAAAACAAGGTGAACCG+GGG | 0.719453 | 2.4:-3585472 | None:intergenic |
| AATGTCTCATCTGAGCATTG+GGG | 0.733687 | 2.4:+3588844 | MS.gene85157:CDS |
| AAGAATGATGAAGAGCAGCG+AGG | 0.735471 | 2.4:-3585433 | None:intergenic |
| GACAGAGTAATGCTACCAGG+AGG | 0.755723 | 2.4:+3587882 | MS.gene85157:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTAATTTTATTT+TGG | + | chr2.4:3585842-3585861 | MS.gene85157:intron | 0.0% |
| !! | AATAAAAAAGTTAATAAGAT+AGG | - | chr2.4:3588443-3588462 | None:intergenic | 10.0% |
| !! | TTAAAAATTACAAATATTTG+TGG | - | chr2.4:3587361-3587380 | None:intergenic | 10.0% |
| !! | CATAGATAAAAAATATGTTA+TGG | - | chr2.4:3588109-3588128 | None:intergenic | 15.0% |
| !! | TAAAAATGTTGTTAATAACT+TGG | + | chr2.4:3585649-3585668 | MS.gene85157:intron | 15.0% |
| !! | TAAAGAATAACAAAATTTAC+TGG | - | chr2.4:3586582-3586601 | None:intergenic | 15.0% |
| !! | TAGTTTACTAGAAAAATTAA+GGG | + | chr2.4:3587328-3587347 | MS.gene85157:intron | 15.0% |
| !! | TTAGTTTACTAGAAAAATTA+AGG | + | chr2.4:3587327-3587346 | MS.gene85157:intron | 15.0% |
| !!! | TGTTAAGTTTTTATAAAATG+TGG | + | chr2.4:3587116-3587135 | MS.gene85157:intron | 15.0% |
| !! | AAAAAAAACTTAGTGTAACA+GGG | + | chr2.4:3587212-3587231 | MS.gene85157:intron | 20.0% |
| !! | AATCTAATCAACAAGAAAAA+AGG | - | chr2.4:3587682-3587701 | None:intergenic | 20.0% |
| !! | ATTAATGAACATATCATAAG+CGG | + | chr2.4:3586468-3586487 | MS.gene85157:intron | 20.0% |
| !! | GATAATATACAGTTAAGTAT+TGG | - | chr2.4:3586624-3586643 | None:intergenic | 20.0% |
| !! | TAAAAAAAACTTAGTGTAAC+AGG | + | chr2.4:3587211-3587230 | MS.gene85157:intron | 20.0% |
| !! | TAATGTCATTATTGTTTCAT+TGG | + | chr2.4:3586028-3586047 | MS.gene85157:intron | 20.0% |
| !! | TTAAAAAAGAATAGAACAGA+AGG | + | chr2.4:3586764-3586783 | MS.gene85157:intron | 20.0% |
| !! | TTACAAGCTATAGTTTAATT+TGG | + | chr2.4:3587422-3587441 | MS.gene85157:intron | 20.0% |
| !! | TTATGGTAATTAGCAAATAA+AGG | - | chr2.4:3588342-3588361 | None:intergenic | 20.0% |
| !!! | AATATCTGGAATTTATATTG+AGG | + | chr2.4:3586862-3586881 | MS.gene85157:intron | 20.0% |
| !!! | TATTTGCTAATTACCATAAA+CGG | + | chr2.4:3588343-3588362 | MS.gene85157:intron | 20.0% |
| !!! | TATTTTTGGTTTTGGTTTTT+TGG | + | chr2.4:3585899-3585918 | MS.gene85157:intron | 20.0% |
| ! | AAAAAAACTTAGTGTAACAG+GGG | + | chr2.4:3587213-3587232 | MS.gene85157:intron | 25.0% |
| ! | AAATGACAACTAAAACGAAT+TGG | - | chr2.4:3586532-3586551 | None:intergenic | 25.0% |
| ! | AATGACAACTAAAACGAATT+GGG | - | chr2.4:3586531-3586550 | None:intergenic | 25.0% |
| ! | AGCATAAAAATCATACATCT+AGG | - | chr2.4:3586800-3586819 | None:intergenic | 25.0% |
| ! | ATAACTGTACTCTGTTTAAA+TGG | - | chr2.4:3588167-3588186 | None:intergenic | 25.0% |
| ! | CAGTTCTATTATTATCAGTT+TGG | + | chr2.4:3587156-3587175 | MS.gene85157:intron | 25.0% |
| ! | CATATATATTGCTTATAAGC+TGG | - | chr2.4:3588074-3588093 | None:intergenic | 25.0% |
| ! | CTAAATACTATATGTAACAG+TGG | + | chr2.4:3587182-3587201 | MS.gene85157:intron | 25.0% |
| ! | CTTCTGGATTATGAATTAAA+GGG | - | chr2.4:3587518-3587537 | None:intergenic | 25.0% |
| ! | TTTCAACAAACCAAACAATT+AGG | - | chr2.4:3586445-3586464 | None:intergenic | 25.0% |
| !! | ACTTTTGTAACAAGGATATA+AGG | + | chr2.4:3587485-3587504 | MS.gene85157:intron | 25.0% |
| !! | ATTTGCTAATTACCATAAAC+GGG | + | chr2.4:3588344-3588363 | MS.gene85157:intron | 25.0% |
| !! | GTTGTATTGAACTTTGAAAA+CGG | + | chr2.4:3586701-3586720 | MS.gene85157:intron | 25.0% |
| !! | TTTGTCCTTTTGTATGTTTT+AGG | + | chr2.4:3587713-3587732 | MS.gene85157:intron | 25.0% |
| !!! | CATTATTGTTTCATTGGTTT+TGG | + | chr2.4:3586034-3586053 | MS.gene85157:intron | 25.0% |
| !!! | TATGTTTTGAGAAAATACCT+TGG | + | chr2.4:3588125-3588144 | MS.gene85157:intron | 25.0% |
| !!! | TGAGAGGCTTTAAATAAAAT+AGG | - | chr2.4:3587560-3587579 | None:intergenic | 25.0% |
| !!! | TTAATTTGGTGCCATTTTTT+GGG | + | chr2.4:3587436-3587455 | MS.gene85157:intron | 25.0% |
| !!! | TTTAATTTGGTGCCATTTTT+TGG | + | chr2.4:3587435-3587454 | MS.gene85157:intron | 25.0% |
| AAAGGAAAAACAAAGTTGAG+AGG | - | chr2.4:3587576-3587595 | None:intergenic | 30.0% | |
| AACCTGAGTACATTTAAACA+TGG | - | chr2.4:3586976-3586995 | None:intergenic | 30.0% | |
| AATGAATTGTTCCTGATATC+TGG | + | chr2.4:3585869-3585888 | MS.gene85157:intron | 30.0% | |
| AATGACAAATCCCCAAAAAA+TGG | - | chr2.4:3587450-3587469 | None:intergenic | 30.0% | |
| ATAGGGGTTGAATTTATAGT+AGG | + | chr2.4:3586114-3586133 | MS.gene85157:intron | 30.0% | |
| ATCTGAAGAAAATGTAGAAG+AGG | + | chr2.4:3588616-3588635 | MS.gene85157:CDS | 30.0% | |
| ATGACAACTAAAACGAATTG+GGG | - | chr2.4:3586530-3586549 | None:intergenic | 30.0% | |
| CCTTCTGGATTATGAATTAA+AGG | - | chr2.4:3587519-3587538 | None:intergenic | 30.0% | |
| CCTTTAATTCATAATCCAGA+AGG | + | chr2.4:3587516-3587535 | MS.gene85157:intron | 30.0% | |
| GAACACCTAAAACATACAAA+AGG | - | chr2.4:3587721-3587740 | None:intergenic | 30.0% | |
| GAATTTATAGTAGGACACAA+GGG | + | chr2.4:3586123-3586142 | MS.gene85157:intron | 30.0% | |
| GAGTACATTTAAACATGGAA+AGG | - | chr2.4:3586971-3586990 | None:intergenic | 30.0% | |
| GCAAATTAAGTTATCCAAAC+TGG | - | chr2.4:3586180-3586199 | None:intergenic | 30.0% | |
| GTGTTCCATAAAATAAAACG+TGG | - | chr2.4:3585928-3585947 | None:intergenic | 30.0% | |
| TCATCAGATAAATAACCATC+CGG | - | chr2.4:3585509-3585528 | None:intergenic | 30.0% | |
| TGAATTTATAGTAGGACACA+AGG | + | chr2.4:3586122-3586141 | MS.gene85157:intron | 30.0% | |
| TTATTGCACAGAGAAATAAG+TGG | - | chr2.4:3586652-3586671 | None:intergenic | 30.0% | |
| TTCCATGTTTAAATGTACTC+AGG | + | chr2.4:3586971-3586990 | MS.gene85157:intron | 30.0% | |
| ! | ATCTGCTATTTGAAAGTTAC+TGG | + | chr2.4:3586911-3586930 | MS.gene85157:intron | 30.0% |
| ! | GAACTTTGAAAACGGAAAAT+AGG | + | chr2.4:3586709-3586728 | MS.gene85157:intron | 30.0% |
| ! | TTTCTTGATGATTGATCCAT+CGG | - | chr2.4:3585390-3585409 | None:intergenic | 30.0% |
| !!! | GGTATCCACGTTTTATTTTA+TGG | + | chr2.4:3585920-3585939 | MS.gene85157:intron | 30.0% |
| !!! | GTGAAAGGTATTTTTGGTTT+TGG | + | chr2.4:3585891-3585910 | MS.gene85157:intron | 30.0% |
| !!! | TAATTTGGTGCCATTTTTTG+GGG | + | chr2.4:3587437-3587456 | MS.gene85157:intron | 30.0% |
| !!! | TATCTGGTGAAAGGTATTTT+TGG | + | chr2.4:3585885-3585904 | MS.gene85157:intron | 30.0% |
| AACAAGGGGATAAAAAAGCT+AGG | - | chr2.4:3587282-3587301 | None:intergenic | 35.0% | |
| AATACCTTTCACCAGATATC+AGG | - | chr2.4:3585883-3585902 | None:intergenic | 35.0% | |
| ACAAGGGGATAAAAAAGCTA+GGG | - | chr2.4:3587281-3587300 | None:intergenic | 35.0% | |
| ACAAGTTCATCAACATTGAC+AGG | - | chr2.4:3588821-3588840 | None:intergenic | 35.0% | |
| AGTATGACTGCTTTAACAAG+GGG | - | chr2.4:3587296-3587315 | None:intergenic | 35.0% | |
| CAAACGAAAAGTAAAGTTGG+TGG | + | chr2.4:3585695-3585714 | MS.gene85157:intron | 35.0% | |
| CAACAAGAAAAAAGGATGCT+CGG | - | chr2.4:3587674-3587693 | None:intergenic | 35.0% | |
| CAAGTCAGAATATGAACCAA+TGG | + | chr2.4:3588586-3588605 | MS.gene85157:CDS | 35.0% | |
| CACCAAACGAAAAGTAAAGT+TGG | + | chr2.4:3585692-3585711 | MS.gene85157:intron | 35.0% | |
| CATCAGATAAATAACCATCC+GGG | - | chr2.4:3585508-3585527 | None:intergenic | 35.0% | |
| CTCTCAAAATACTAGTACCA+TGG | - | chr2.4:3586076-3586095 | None:intergenic | 35.0% | |
| CTTACTTTCATAAGCTCTTC+AGG | - | chr2.4:3586261-3586280 | None:intergenic | 35.0% | |
| GAAAATGAGGCAGGTAAATA+AGG | - | chr2.4:3588701-3588720 | None:intergenic | 35.0% | |
| GAACATAGATTGTTCTTGGT+TGG | + | chr2.4:3587755-3587774 | MS.gene85157:CDS | 35.0% | |
| GAGTATGACTGCTTTAACAA+GGG | - | chr2.4:3587297-3587316 | None:intergenic | 35.0% | |
| GGAAGAACATAGATTGTTCT+TGG | + | chr2.4:3587751-3587770 | MS.gene85157:CDS | 35.0% | |
| GTGGAAAACGGTTTAATATC+TGG | + | chr2.4:3586848-3586867 | MS.gene85157:intron | 35.0% | |
| TCCTAACAACTTCAAGGAAA+GGG | - | chr2.4:3588900-3588919 | None:intergenic | 35.0% | |
| TGAGACCATTGGAGTTAATA+GGG | + | chr2.4:3586097-3586116 | MS.gene85157:intron | 35.0% | |
| TGAGTATGACTGCTTTAACA+AGG | - | chr2.4:3587298-3587317 | None:intergenic | 35.0% | |
| TGGTTATTTATCTGATGACC+CGG | + | chr2.4:3585511-3585530 | MS.gene85157:CDS | 35.0% | |
| TTCAATATCCAGTTACAACG+AGG | - | chr2.4:3588375-3588394 | None:intergenic | 35.0% | |
| TTGAGACCATTGGAGTTAAT+AGG | + | chr2.4:3586096-3586115 | MS.gene85157:intron | 35.0% | |
| TTGAGAGACAGATTTAGTGA+TGG | - | chr2.4:3588569-3588588 | None:intergenic | 35.0% | |
| ! | AAGCTGTGACTTTTGTAACA+AGG | + | chr2.4:3587477-3587496 | MS.gene85157:intron | 35.0% |
| ! | AGAAAATACCTTGGTGTGTT+TGG | + | chr2.4:3588134-3588153 | MS.gene85157:intron | 35.0% |
| ! | GGAACACATTTTCGTTTGAT+TGG | + | chr2.4:3585941-3585960 | MS.gene85157:intron | 35.0% |
| ! | GGAGTAGTAAGAGTTTGTTT+GGG | - | chr2.4:3586509-3586528 | None:intergenic | 35.0% |
| ! | GGTTGTGATTTTCCATTACA+AGG | - | chr2.4:3588548-3588567 | None:intergenic | 35.0% |
| ! | GTAGTGGTGTTAATAAGGAT+AGG | - | chr2.4:3588050-3588069 | None:intergenic | 35.0% |
| ! | GTCAATGTTGATGAACTTGT+GGG | + | chr2.4:3588821-3588840 | MS.gene85157:CDS | 35.0% |
| ! | TGTCAATGTTGATGAACTTG+TGG | + | chr2.4:3588820-3588839 | MS.gene85157:CDS | 35.0% |
| ! | TTTGATTGGTCACGAAATGA+CGG | + | chr2.4:3585955-3585974 | MS.gene85157:intron | 35.0% |
| ! | TTTTCCATATGGCCATCAAT+TGG | + | chr2.4:3588716-3588735 | MS.gene85157:CDS | 35.0% |
| !! | AGACTGTTGATTCATTAAGC+AGG | + | chr2.4:3587648-3587667 | MS.gene85157:intron | 35.0% |
| !! | ATCAAGAAAAGTGCCAGTAT+GGG | + | chr2.4:3585401-3585420 | MS.gene85157:CDS | 35.0% |
| !! | ATTTTGAGAGTTGAGACCAT+TGG | + | chr2.4:3586086-3586105 | MS.gene85157:intron | 35.0% |
| !! | CACCAACTTTACTTTTCGTT+TGG | - | chr2.4:3585697-3585716 | None:intergenic | 35.0% |
| !! | CACGTAATTTTGTTGTGTCA+AGG | + | chr2.4:3587816-3587835 | MS.gene85157:CDS | 35.0% |
| !! | CCTTTGTTGACTTCTTCAAA+GGG | - | chr2.4:3588746-3588765 | None:intergenic | 35.0% |
| !! | TCCTTTGTTGACTTCTTCAA+AGG | - | chr2.4:3588747-3588766 | None:intergenic | 35.0% |
| !! | TGGTTGATGAACTTCATCAA+AGG | - | chr2.4:3586416-3586435 | None:intergenic | 35.0% |
| !! | TGTATGTTTTAGGTGTTCCA+TGG | + | chr2.4:3587723-3587742 | MS.gene85157:intron | 35.0% |
| !! | TTTGGTGTTAGATTAACCGA+TGG | + | chr2.4:3585371-3585390 | MS.gene85157:CDS | 35.0% |
| !!! | TACCTTTTTTTCTTTCGCTG+CGG | - | chr2.4:3585565-3585584 | None:intergenic | 35.0% |
| AACTAATCTCCTCGAAGACA+TGG | - | chr2.4:3587600-3587619 | None:intergenic | 40.0% | |
| AATGAGGCAGGTAAATAAGG+TGG | - | chr2.4:3588698-3588717 | None:intergenic | 40.0% | |
| ACACAAGGGAATGTTTACGT+TGG | + | chr2.4:3586137-3586156 | MS.gene85157:intron | 40.0% | |
| ACCAAACAATTAGGCTCAAG+TGG | - | chr2.4:3586436-3586455 | None:intergenic | 40.0% | |
| ACCACACATTATAAGCGTGT+TGG | + | chr2.4:3585721-3585740 | MS.gene85157:intron | 40.0% | |
| ACCACTTGAGCCTAATTGTT+TGG | + | chr2.4:3586432-3586451 | MS.gene85157:intron | 40.0% | |
| ACGTTGGTATGGTACGAATT+AGG | + | chr2.4:3586153-3586172 | MS.gene85157:intron | 40.0% | |
| AGGGAATGTTTACGTTGGTA+TGG | + | chr2.4:3586142-3586161 | MS.gene85157:intron | 40.0% | |
| ATGAGGCAGGTAAATAAGGT+GGG | - | chr2.4:3588697-3588716 | None:intergenic | 40.0% | |
| CCTAACAACTTCAAGGAAAG+GGG | - | chr2.4:3588899-3588918 | None:intergenic | 40.0% | |
| CTAACAACTTCAAGGAAAGG+GGG | - | chr2.4:3588898-3588917 | None:intergenic | 40.0% | |
| CTCCTAACAACTTCAAGGAA+AGG | - | chr2.4:3588901-3588920 | None:intergenic | 40.0% | |
| CTTTCTTCCACAAACAACAC+GGG | + | chr2.4:3586818-3586837 | MS.gene85157:intron | 40.0% | |
| GAATGAATACTGACCACATC+AGG | - | chr2.4:3587938-3587957 | None:intergenic | 40.0% | |
| GAATGTCTCATCTGAGCATT+GGG | + | chr2.4:3588843-3588862 | MS.gene85157:CDS | 40.0% | |
| GAGAACTCACAACCTTGTAA+TGG | + | chr2.4:3588533-3588552 | MS.gene85157:CDS | 40.0% | |
| GAGACCATTGGAGTTAATAG+GGG | + | chr2.4:3586098-3586117 | MS.gene85157:intron | 40.0% | |
| GAGACTACAATGGGATCAAA+TGG | + | chr2.4:3588644-3588663 | MS.gene85157:CDS | 40.0% | |
| GCTTTCTTCCACAAACAACA+CGG | + | chr2.4:3586817-3586836 | MS.gene85157:intron | 40.0% | |
| TAACAACTTCAAGGAAAGGG+GGG | - | chr2.4:3588897-3588916 | None:intergenic | 40.0% | |
| TCAACATTGACAGGTTCCTT+TGG | - | chr2.4:3588812-3588831 | None:intergenic | 40.0% | |
| TCAACCCCTATTAACTCCAA+TGG | - | chr2.4:3586105-3586124 | None:intergenic | 40.0% | |
| TCAAGCAACAAACTCTTGTC+TGG | - | chr2.4:3586940-3586959 | None:intergenic | 40.0% | |
| TCCAACACGCTTATAATGTG+TGG | - | chr2.4:3585725-3585744 | None:intergenic | 40.0% | |
| TCTTCAGATGTAGCTTCCAT+TGG | - | chr2.4:3588605-3588624 | None:intergenic | 40.0% | |
| TGAGAAACTCAACAGAGTCA+AGG | - | chr2.4:3588252-3588271 | None:intergenic | 40.0% | |
| TGATCCCATTGTAGTCTCAT+TGG | - | chr2.4:3588642-3588661 | None:intergenic | 40.0% | |
| TGATGGCCATATGGAAAATG+AGG | - | chr2.4:3588714-3588733 | None:intergenic | 40.0% | |
| TGTTCCTGATATCTGGTGAA+AGG | + | chr2.4:3585876-3585895 | MS.gene85157:intron | 40.0% | |
| TTGCTTATAAGCTGGTGTAG+TGG | - | chr2.4:3588066-3588085 | None:intergenic | 40.0% | |
| TTTAGATCAGAACCGCTAAC+TGG | - | chr2.4:3588959-3588978 | None:intergenic | 40.0% | |
| TTTCATAAGCTCTTCAGGAG+AGG | - | chr2.4:3586256-3586275 | None:intergenic | 40.0% | |
| TTTCCTTTACCATGTCTTCG+AGG | + | chr2.4:3587588-3587607 | MS.gene85157:intron | 40.0% | |
| TTTCTTCCACAAACAACACG+GGG | + | chr2.4:3586819-3586838 | MS.gene85157:intron | 40.0% | |
| ! | AAAACCAGAGTTCGATTCGT+GGG | - | chr2.4:3586391-3586410 | None:intergenic | 40.0% |
| ! | AAAGCAGAAGAAGCATGAAC+CGG | - | chr2.4:3585533-3585552 | None:intergenic | 40.0% |
| ! | AATGTCTCATCTGAGCATTG+GGG | + | chr2.4:3588844-3588863 | MS.gene85157:CDS | 40.0% |
| ! | CCCTTTGAAGAAGTCAACAA+AGG | + | chr2.4:3588743-3588762 | MS.gene85157:CDS | 40.0% |
| ! | CTGGTGTAGTGGTGTTAATA+AGG | - | chr2.4:3588055-3588074 | None:intergenic | 40.0% |
| ! | GGGAGTAGTAAGAGTTTGTT+TGG | - | chr2.4:3586510-3586529 | None:intergenic | 40.0% |
| ! | GTACCATGGATTGTACCATA+CGG | - | chr2.4:3586062-3586081 | None:intergenic | 40.0% |
| ! | GTGGTGTTAATAAGGATAGG+AGG | - | chr2.4:3588047-3588066 | None:intergenic | 40.0% |
| ! | TACCTGCCTCATTTTCCATA+TGG | + | chr2.4:3588705-3588724 | MS.gene85157:CDS | 40.0% |
| ! | TTTTTCTTCCGTTAACCCCT+CGG | + | chr2.4:3586292-3586311 | MS.gene85157:intron | 40.0% |
| !! | ATGACTTGCTACTTGAGTAG+GGG | - | chr2.4:3587843-3587862 | None:intergenic | 40.0% |
| !! | CATCAAGAAAAGTGCCAGTA+TGG | + | chr2.4:3585400-3585419 | MS.gene85157:CDS | 40.0% |
| !! | CATGACTTGCTACTTGAGTA+GGG | - | chr2.4:3587844-3587863 | None:intergenic | 40.0% |
| !! | GTTGTGTCTGGCTTTAATAC+AGG | + | chr2.4:3587241-3587260 | MS.gene85157:intron | 40.0% |
| !! | TCAAGAAAAGTGCCAGTATG+GGG | + | chr2.4:3585402-3585421 | MS.gene85157:CDS | 40.0% |
| !! | TCCTTTGGAATGACTGGTAT+TGG | - | chr2.4:3588797-3588816 | None:intergenic | 40.0% |
| !!! | GACCCTAGTATTTTGGAGTT+CGG | + | chr2.4:3586328-3586347 | MS.gene85157:intron | 40.0% |
| !!! | TCATTGGTTTTGGTTCCGTA+TGG | + | chr2.4:3586044-3586063 | MS.gene85157:intron | 40.0% |
| AAAAGCTAGGCAAAGGAGAC+TGG | + | chr2.4:3587783-3587802 | MS.gene85157:CDS | 45.0% | |
| AAATAACCATCCGGGTCATG+CGG | - | chr2.4:3585500-3585519 | None:intergenic | 45.0% | |
| AACGAGGATGAACCCGTTTA+TGG | - | chr2.4:3588359-3588378 | None:intergenic | 45.0% | |
| AAGAATGATGAAGAGCAGCG+AGG | - | chr2.4:3585436-3585455 | None:intergenic | 45.0% | |
| AGAGGCCAATGAGACTACAA+TGG | + | chr2.4:3588634-3588653 | MS.gene85157:CDS | 45.0% | |
| AGGAGAGACATCGTATCATC+AGG | + | chr2.4:3588763-3588782 | MS.gene85157:CDS | 45.0% | |
| AGGCCGAACTCCAAAATACT+AGG | - | chr2.4:3586334-3586353 | None:intergenic | 45.0% | |
| CAAGGTTGTGAGTTCTCAGA+AGG | - | chr2.4:3588530-3588549 | None:intergenic | 45.0% | |
| CATGCAAATGCTCCAGTTAG+CGG | + | chr2.4:3588944-3588963 | MS.gene85157:CDS | 45.0% | |
| CCCCTTTCCTTGAAGTTGTT+AGG | + | chr2.4:3588896-3588915 | MS.gene85157:CDS | 45.0% | |
| CGGTTCAAAACAAGGTGAAC+CGG | - | chr2.4:3585477-3585496 | None:intergenic | 45.0% | |
| CTATGTTCTTCCTCAGTCCA+TGG | - | chr2.4:3587743-3587762 | None:intergenic | 45.0% | |
| GAGGCCAATGAGACTACAAT+GGG | + | chr2.4:3588635-3588654 | MS.gene85157:CDS | 45.0% | |
| GATTCAAGCCAAACACACCA+AGG | - | chr2.4:3588145-3588164 | None:intergenic | 45.0% | |
| GCCAAGCTATACTTACCTCA+AGG | - | chr2.4:3586354-3586373 | None:intergenic | 45.0% | |
| GCCAATACCAGTCATTCCAA+AGG | + | chr2.4:3588793-3588812 | MS.gene85157:CDS | 45.0% | |
| GCCTTGAGGTAAGTATAGCT+TGG | + | chr2.4:3586350-3586369 | MS.gene85157:intron | 45.0% | |
| GGAAGTAGTACTTGCTCTTC+TGG | - | chr2.4:3588506-3588525 | None:intergenic | 45.0% | |
| GGAATGTCTCATCTGAGCAT+TGG | + | chr2.4:3588842-3588861 | MS.gene85157:CDS | 45.0% | |
| GGCCGAACTCCAAAATACTA+GGG | - | chr2.4:3586333-3586352 | None:intergenic | 45.0% | |
| GGTACGAATTAGGTCCAGTT+TGG | + | chr2.4:3586163-3586182 | MS.gene85157:intron | 45.0% | |
| GGTTCAAAACAAGGTGAACC+GGG | - | chr2.4:3585476-3585495 | None:intergenic | 45.0% | |
| GTTCAAAACAAGGTGAACCG+GGG | - | chr2.4:3585475-3585494 | None:intergenic | 45.0% | |
| GTTCCGTATGGTACAATCCA+TGG | + | chr2.4:3586056-3586075 | MS.gene85157:intron | 45.0% | |
| TCAAAGGGAGCTCCAATTGA+TGG | - | chr2.4:3588731-3588750 | None:intergenic | 45.0% | |
| TCCTGGTAGCATTACTCTGT+CGG | - | chr2.4:3587883-3587902 | None:intergenic | 45.0% | |
| TCTCCTCGAAGACATGGTAA+AGG | - | chr2.4:3587594-3587613 | None:intergenic | 45.0% | |
| TTCTTCCACAAACAACACGG+GGG | + | chr2.4:3586820-3586839 | MS.gene85157:intron | 45.0% | |
| ! | AAGCAGAAGAAGCATGAACC+GGG | - | chr2.4:3585532-3585551 | None:intergenic | 45.0% |
| ! | ACGTTCCAGTCTTTTCGACA+TGG | + | chr2.4:3587910-3587929 | MS.gene85157:CDS | 45.0% |
| ! | AGCGGTTCTGATCTAAACAG+TGG | + | chr2.4:3588962-3588981 | MS.gene85157:CDS | 45.0% |
| ! | AGCTCCAATTGATGGCCATA+TGG | - | chr2.4:3588723-3588742 | None:intergenic | 45.0% |
| ! | ATGGAATGCTGATTGCCTTG+AGG | - | chr2.4:3588927-3588946 | None:intergenic | 45.0% |
| ! | CAAAACCAGAGTTCGATTCG+TGG | - | chr2.4:3586392-3586411 | None:intergenic | 45.0% |
| ! | GAGGAGATTAGTTGCTGCAT+CGG | + | chr2.4:3587607-3587626 | MS.gene85157:intron | 45.0% |
| ! | TCTGGCATCGAAGTTGAATC+TGG | - | chr2.4:3588488-3588507 | None:intergenic | 45.0% |
| ! | TGGAATGCTGATTGCCTTGA+GGG | - | chr2.4:3588926-3588945 | None:intergenic | 45.0% |
| ! | TTTAGGTGTTCCATGGACTG+AGG | + | chr2.4:3587730-3587749 | MS.gene85157:intron | 45.0% |
| !! | ACAGGTTCCTTTGGAATGAC+TGG | - | chr2.4:3588803-3588822 | None:intergenic | 45.0% |
| !! | AGTCTCCTTTGCCTAGCTTT+TGG | - | chr2.4:3587784-3587803 | None:intergenic | 45.0% |
| !! | ATCTGAGCATTGGGGAAACA+CGG | + | chr2.4:3588852-3588871 | MS.gene85157:CDS | 45.0% |
| !! | GAATGACTGGTATTGGCTTG+AGG | - | chr2.4:3588790-3588809 | None:intergenic | 45.0% |
| !! | GCATGACTTGCTACTTGAGT+AGG | - | chr2.4:3587845-3587864 | None:intergenic | 45.0% |
| !! | TTGGTTGGTCTCCAAAAGCT+AGG | + | chr2.4:3587770-3587789 | MS.gene85157:CDS | 45.0% |
| !!! | CTTTTTTTCTTTCGCTGCGG+CGG | - | chr2.4:3585562-3585581 | None:intergenic | 45.0% |
| !!! | TATTTTGGAGTTCGGCCTTG+AGG | + | chr2.4:3586336-3586355 | MS.gene85157:intron | 45.0% |
| !!! | TTTTTTTCTTTCGCTGCGGC+GGG | - | chr2.4:3585561-3585580 | None:intergenic | 45.0% |
| AAATACTAGGGTCCTTCCCC+TGG | - | chr2.4:3586321-3586340 | None:intergenic | 50.0% | |
| AACTTCAAGGAAAGGGGGGA+AGG | - | chr2.4:3588893-3588912 | None:intergenic | 50.0% | |
| AATACTAGGGTCCTTCCCCT+GGG | - | chr2.4:3586320-3586339 | None:intergenic | 50.0% | |
| ACAGGGGTAACTGTTGTGTC+TGG | + | chr2.4:3587229-3587248 | MS.gene85157:intron | 50.0% | |
| ACGGACATGTCCGTGAGTTA+TGG | - | chr2.4:3585316-3585335 | None:intergenic | 50.0% | |
| AGGAGCCATGTCGAAAAGAC+TGG | - | chr2.4:3587918-3587937 | None:intergenic | 50.0% | |
| AGTTGTTAGGAGAGCCCTCA+AGG | + | chr2.4:3588909-3588928 | MS.gene85157:CDS | 50.0% | |
| CGCCGCAGCGAAAGAAAAAA+AGG | + | chr2.4:3585560-3585579 | MS.gene85157:CDS | 50.0% | |
| GACAGAGTAATGCTACCAGG+AGG | + | chr2.4:3587882-3587901 | MS.gene85157:CDS | 50.0% | |
| GATGAAGAGCAGCGAGGTTT+AGG | - | chr2.4:3585430-3585449 | None:intergenic | 50.0% | |
| GCAACAACGGCCATAACTCA+CGG | + | chr2.4:3585303-3585322 | MS.gene85157:CDS | 50.0% | |
| GGATTCACACCAATGACGCA+AGG | + | chr2.4:3588665-3588684 | MS.gene85157:CDS | 50.0% | |
| GGCCATATGGAAAATGAGGC+AGG | - | chr2.4:3588710-3588729 | None:intergenic | 50.0% | |
| GGGAAGAATCCTTGCGTCAT+TGG | - | chr2.4:3588677-3588696 | None:intergenic | 50.0% | |
| GGGCTCTCCTAACAACTTCA+AGG | - | chr2.4:3588906-3588925 | None:intergenic | 50.0% | |
| GGGTTCATCCTCGTTGTAAC+TGG | + | chr2.4:3588364-3588383 | MS.gene85157:intron | 50.0% | |
| GGTCTCCAAAAGCTAGGCAA+AGG | + | chr2.4:3587776-3587795 | MS.gene85157:CDS | 50.0% | |
| GGTTGTGAGTTCTCAGAAGG+TGG | - | chr2.4:3588527-3588546 | None:intergenic | 50.0% | |
| GTAGCAAAGTAGCAGCCTTC+TGG | - | chr2.4:3587534-3587553 | None:intergenic | 50.0% | |
| TCAACCCACGAATCGAACTC+TGG | + | chr2.4:3586384-3586403 | MS.gene85157:intron | 50.0% | |
| TCATGCGGCGGTTCAAAACA+AGG | - | chr2.4:3585485-3585504 | None:intergenic | 50.0% | |
| TCCGACAGAGTAATGCTACC+AGG | + | chr2.4:3587879-3587898 | MS.gene85157:CDS | 50.0% | |
| TGCTCTCACTGCAGCAACAA+CGG | + | chr2.4:3585290-3585309 | MS.gene85157:CDS | 50.0% | |
| TTTCGACATGGCTCCTGATG+TGG | + | chr2.4:3587922-3587941 | MS.gene85157:CDS | 50.0% | |
| ! | CGCTAACTGGAGCATTTGCA+TGG | - | chr2.4:3588946-3588965 | None:intergenic | 50.0% |
| ! | GAGGTTTAGGTTCCCCATAC+TGG | - | chr2.4:3585417-3585436 | None:intergenic | 50.0% |
| ! | GGGGAAGGACCCTAGTATTT+TGG | + | chr2.4:3586321-3586340 | MS.gene85157:intron | 50.0% |
| !! | TCTGAGCATTGGGGAAACAC+GGG | + | chr2.4:3588853-3588872 | MS.gene85157:CDS | 50.0% |
| ACCAAAAAGCTTCACCCCGC+CGG | - | chr2.4:3585357-3585376 | None:intergenic | 55.0% | |
| ACTGGAACGTCTCTTCCTCC+TGG | - | chr2.4:3587900-3587919 | None:intergenic | 55.0% | |
| TAGGCAAAGGAGACTGGCGA+GGG | + | chr2.4:3587789-3587808 | MS.gene85157:CDS | 55.0% | |
| ! | CACAAACAACACGGGGGTGT+CGG | + | chr2.4:3586826-3586845 | MS.gene85157:intron | 55.0% |
| ! | TTTTGAACCGCCGCATGACC+CGG | + | chr2.4:3585487-3585506 | MS.gene85157:CDS | 55.0% |
| CAAGGTGAACCGGGGTTCAG+CGG | - | chr2.4:3585467-3585486 | None:intergenic | 60.0% | |
| CCTGGGAACCGAGGGGTTAA+CGG | - | chr2.4:3586303-3586322 | None:intergenic | 60.0% | |
| CGTTAACCCCTCGGTTCCCA+GGG | + | chr2.4:3586301-3586320 | MS.gene85157:intron | 60.0% | |
| CTAGGCAAAGGAGACTGGCG+AGG | + | chr2.4:3587788-3587807 | MS.gene85157:CDS | 60.0% | |
| GTTAACCCCTCGGTTCCCAG+GGG | + | chr2.4:3586302-3586321 | MS.gene85157:intron | 60.0% | |
| TAACCATCCGGGTCATGCGG+CGG | - | chr2.4:3585497-3585516 | None:intergenic | 60.0% | |
| TCTTCTTCGCCGCTGAACCC+CGG | + | chr2.4:3585455-3585474 | MS.gene85157:CDS | 60.0% | |
| !! | AAACAACACGGGGGTGTCGG+TGG | + | chr2.4:3586829-3586848 | MS.gene85157:intron | 60.0% |
| !! | ACGGGGGTGTCGGTGGAAAA+CGG | + | chr2.4:3586836-3586855 | MS.gene85157:intron | 60.0% |
| !! | CGACACCCCCGTGTTGTTTG+TGG | - | chr2.4:3586828-3586847 | None:intergenic | 60.0% |
| CCGTTAACCCCTCGGTTCCC+AGG | + | chr2.4:3586300-3586319 | MS.gene85157:intron | 65.0% | |
| GTCCTTCCCCTGGGAACCGA+GGG | - | chr2.4:3586311-3586330 | None:intergenic | 65.0% | |
| TCCTTCCCCTGGGAACCGAG+GGG | - | chr2.4:3586310-3586329 | None:intergenic | 65.0% | |
| ! | GCCGGCGGGGTGAAGCTTTT+TGG | + | chr2.4:3585353-3585372 | MS.gene85157:CDS | 65.0% |
| AAGCTTCACCCCGCCGGCAG+CGG | - | chr2.4:3585351-3585370 | None:intergenic | 70.0% | |
| ACCCCTCGGTTCCCAGGGGA+AGG | + | chr2.4:3586306-3586325 | MS.gene85157:intron | 70.0% | |
| GAACCGCCGCATGACCCGGA+TGG | + | chr2.4:3585491-3585510 | MS.gene85157:CDS | 70.0% | |
| GGTCCTTCCCCTGGGAACCG+AGG | - | chr2.4:3586312-3586331 | None:intergenic | 70.0% | |
| GCAGCGGCGGCGCTTCTCGA+CGG | - | chr2.4:3585335-3585354 | None:intergenic | 75.0% | |
| !! | TCGAGAAGCGCCGCCGCTGC+CGG | + | chr2.4:3585335-3585354 | MS.gene85157:CDS | 75.0% |
| ! | CTTCACCCCGCCGGCAGCGG+CGG | - | chr2.4:3585348-3585367 | None:intergenic | 80.0% |
| !!! | AGAAGCGCCGCCGCTGCCGG+CGG | + | chr2.4:3585338-3585357 | MS.gene85157:CDS | 80.0% |
| !! | AAGCGCCGCCGCTGCCGGCG+GGG | + | chr2.4:3585340-3585359 | MS.gene85157:CDS | 85.0% |
| !!! | GAAGCGCCGCCGCTGCCGGC+GGG | + | chr2.4:3585339-3585358 | MS.gene85157:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 3585278 | 3589012 | 3585278 | ID=MS.gene85157 |
| chr2.4 | mRNA | 3585278 | 3589012 | 3585278 | ID=MS.gene85157.t1;Parent=MS.gene85157 |
| chr2.4 | exon | 3585278 | 3585581 | 3585278 | ID=MS.gene85157.t1.exon1;Parent=MS.gene85157.t1 |
| chr2.4 | CDS | 3585278 | 3585581 | 3585278 | ID=cds.MS.gene85157.t1;Parent=MS.gene85157.t1 |
| chr2.4 | exon | 3587735 | 3587943 | 3587735 | ID=MS.gene85157.t1.exon2;Parent=MS.gene85157.t1 |
| chr2.4 | CDS | 3587735 | 3587943 | 3587735 | ID=cds.MS.gene85157.t1;Parent=MS.gene85157.t1 |
| chr2.4 | exon | 3588482 | 3589012 | 3588482 | ID=MS.gene85157.t1.exon3;Parent=MS.gene85157.t1 |
| chr2.4 | CDS | 3588482 | 3589012 | 3588482 | ID=cds.MS.gene85157.t1;Parent=MS.gene85157.t1 |
| Gene Sequence |
| Protein sequence |
