AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059420.t1 MTR_6g047610 96.709 395 13 0 1 395 89 483 0.0 767
MS.gene059420.t1 MTR_6g047640 86.329 395 54 0 1 395 90 484 0.0 682
MS.gene059420.t1 MTR_6g047640 82.532 395 50 1 1 395 90 465 0.0 659
MS.gene059420.t1 MTR_6g047590 83.805 389 63 0 1 389 89 477 0.0 634
MS.gene059420.t1 MTR_1g100180 53.181 393 184 0 1 393 102 494 2.28e-152 440
MS.gene059420.t1 MTR_1g021740 44.301 386 214 1 1 385 94 479 3.52e-114 342
MS.gene059420.t1 MTR_5g033100 45.385 390 212 1 1 389 115 504 1.54e-112 339
MS.gene059420.t1 MTR_8g069470 41.985 393 227 1 1 392 109 501 3.92e-112 338
MS.gene059420.t1 MTR_7g087410 42.268 388 223 1 1 387 1 388 4.86e-111 331
MS.gene059420.t1 MTR_7g087410 42.268 388 223 1 1 387 90 477 6.40e-110 331
MS.gene059420.t1 MTR_7g087430 40.863 394 230 2 1 393 1 392 5.10e-104 313
MS.gene059420.t1 MTR_7g087400 41.192 386 227 0 1 386 89 474 6.13e-103 313
MS.gene059420.t1 MTR_5g032720 39.594 394 236 2 1 392 95 488 5.37e-101 308
MS.gene059420.t1 MTR_2g022980 39.332 389 234 1 1 387 107 495 7.74e-100 305
MS.gene059420.t1 MTR_4g048000 40.464 388 229 1 1 386 123 510 1.62e-99 305
MS.gene059420.t1 MTR_2g088400 39.848 394 235 1 1 392 111 504 9.52e-99 303
MS.gene059420.t1 MTR_6g027200 41.624 394 228 2 1 393 96 488 6.59e-98 301
MS.gene059420.t1 MTR_3g099700 40.404 396 234 2 1 394 105 500 1.73e-97 300
MS.gene059420.t1 MTR_5g032750 39.747 395 235 3 1 392 95 489 1.50e-93 289
MS.gene059420.t1 MTR_6g027190 39.949 393 236 0 1 393 84 476 2.52e-93 288
MS.gene059420.t1 MTR_3g099720 37.760 384 238 1 1 383 100 483 3.15e-89 278
MS.gene059420.t1 MTR_8g063590 39.221 385 231 2 1 382 112 496 1.03e-85 270
MS.gene059420.t1 MTR_5g090290 37.143 385 240 1 1 383 105 489 2.14e-85 271
MS.gene059420.t1 MTR_2g088400 41.210 347 202 1 1 345 111 457 6.71e-85 266
MS.gene059420.t1 MTR_7g087370 36.641 393 218 2 1 393 89 450 1.88e-83 262
MS.gene059420.t1 MTR_6g081780 34.103 390 245 4 1 382 84 469 5.00e-70 228
MS.gene059420.t1 MTR_6g081410 33.760 391 247 4 1 383 84 470 4.56e-69 226
MS.gene059420.t1 MTR_5g087930 32.061 393 242 5 1 389 85 456 8.11e-67 219
MS.gene059420.t1 MTR_6g066380 33.850 387 250 3 1 382 86 471 7.40e-66 217
MS.gene059420.t1 MTR_2g078930 35.106 376 240 2 1 373 102 476 2.43e-63 211
MS.gene059420.t1 MTR_2g079020 34.574 376 242 2 1 373 96 470 3.82e-62 208
MS.gene059420.t1 MTR_1g108810 32.143 392 257 2 1 383 93 484 6.73e-61 204
MS.gene059420.t1 MTR_6g081240 33.858 381 242 4 1 375 69 445 1.10e-60 202
MS.gene059420.t1 MTR_8g106670 30.390 385 266 1 1 383 71 455 6.81e-60 201
MS.gene059420.t1 MTR_6g081300 32.391 389 253 4 1 383 69 453 5.15e-59 199
MS.gene059420.t1 MTR_1g108840 33.333 387 248 4 1 383 100 480 1.35e-58 198
MS.gene059420.t1 MTR_7g082810 29.975 397 272 3 1 394 79 472 1.69e-58 198
MS.gene059420.t1 MTR_6g081390 32.308 390 248 5 2 382 73 455 2.65e-57 194
MS.gene059420.t1 MTR_2g078970 34.301 379 239 3 1 373 90 464 1.19e-56 193
MS.gene059420.t1 MTR_6g081810 30.628 382 241 3 1 382 86 443 2.24e-56 191
MS.gene059420.t1 MTR_2g078960 34.828 379 237 3 1 373 92 466 9.68e-56 191
MS.gene059420.t1 MTR_5g090280 29.009 424 265 4 1 395 1 417 1.82e-54 186
MS.gene059420.t1 MTR_6g081400 30.469 384 263 2 2 382 76 458 2.34e-54 187
MS.gene059420.t1 MTR_6g004220 27.654 405 274 7 1 395 83 478 4.64e-53 183
MS.gene059420.t1 MTR_7g082800 29.381 388 264 3 1 382 1 384 5.13e-53 181
MS.gene059420.t1 MTR_1g108990 30.886 395 268 3 1 392 84 476 1.40e-52 182
MS.gene059420.t1 MTR_6g004220 28.312 385 258 6 1 375 90 466 6.12e-52 181
MS.gene059420.t1 MTR_6g081310 31.830 399 251 5 1 382 56 450 8.33e-52 180
MS.gene059420.t1 MTR_1g109060 30.435 391 268 2 1 389 83 471 1.61e-48 171
MS.gene059420.t1 MTR_1g109060 30.769 377 259 1 1 375 83 459 3.47e-48 171
MS.gene059420.t1 MTR_5g010830 28.232 379 270 1 1 377 124 502 1.26e-47 170
MS.gene059420.t1 MTR_2g078990 32.542 295 189 3 85 373 3 293 1.32e-43 154
MS.gene059420.t1 MTR_6g043810 27.979 386 265 4 1 374 92 476 4.27e-43 157
MS.gene059420.t1 MTR_6g043810 27.979 386 265 4 1 374 82 466 4.28e-43 157
MS.gene059420.t1 MTR_5g067460 26.263 396 287 2 1 394 114 506 8.90e-43 157
MS.gene059420.t1 MTR_0039s0080 27.569 399 275 5 1 393 97 487 3.54e-42 155
MS.gene059420.t1 MTR_1g101500 26.396 394 288 1 1 392 123 516 5.95e-41 152
MS.gene059420.t1 MTR_3g111020 25.758 396 270 4 1 383 110 494 3.29e-39 147
MS.gene059420.t1 MTR_6g088805 27.202 386 262 9 1 377 86 461 2.79e-34 133
MS.gene059420.t1 MTR_2g079030 34.872 195 127 0 179 373 319 513 2.74e-32 128
MS.gene059420.t1 MTR_4g027920 23.192 401 297 5 1 395 215 610 6.21e-29 119
MS.gene059420.t1 MTR_2g435930 24.810 395 273 5 1 374 78 469 2.59e-28 116
MS.gene059420.t1 MTR_6g004220 24.684 316 220 6 1 306 90 397 1.79e-27 113
MS.gene059420.t1 MTR_8g102430 25.393 382 257 7 1 377 82 440 9.83e-27 111
MS.gene059420.t1 MTR_5g011540 26.566 399 276 4 4 394 105 494 3.23e-26 110
MS.gene059420.t1 MTR_6g004220 28.837 215 143 4 1 209 90 300 1.43e-19 89.4
MS.gene059420.t1 MTR_4g131290 42.857 70 40 0 3 72 2 71 8.98e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059420.t1 AT4G00350 52.538 394 185 1 1 392 146 539 8.94e-153 442
MS.gene059420.t1 AT4G25640 55.303 396 176 1 1 395 92 487 3.97e-145 421
MS.gene059420.t1 AT4G25640 55.303 396 176 1 1 395 92 487 1.32e-144 421
MS.gene059420.t1 AT4G25640 56.395 344 150 0 1 344 92 435 1.22e-129 381
MS.gene059420.t1 AT1G47530 46.114 386 207 1 1 385 1 386 4.29e-123 362
MS.gene059420.t1 AT1G47530 46.114 386 207 1 1 385 93 478 3.68e-122 362
MS.gene059420.t1 AT3G26590 44.444 387 212 3 1 385 1 386 1.03e-114 340
MS.gene059420.t1 AT3G26590 44.444 387 212 3 1 385 103 488 1.62e-113 341
MS.gene059420.t1 AT5G38030 42.487 386 221 1 1 385 103 488 1.00e-112 339
MS.gene059420.t1 AT1G23300 42.424 396 227 1 1 395 102 497 5.23e-112 337
MS.gene059420.t1 AT1G12950 41.667 396 230 1 1 395 125 520 3.55e-111 335
MS.gene059420.t1 AT1G61890 39.031 392 235 3 1 389 105 495 1.55e-105 320
MS.gene059420.t1 AT1G11670 39.796 392 232 3 1 389 108 498 5.75e-105 319
MS.gene059420.t1 AT1G61890 39.578 379 225 3 1 376 105 482 1.40e-100 307
MS.gene059420.t1 AT3G21690 39.695 393 235 1 1 391 110 502 2.59e-100 307
MS.gene059420.t1 AT4G21903 38.363 391 239 1 1 389 1 391 2.97e-97 296
MS.gene059420.t1 AT1G33110 41.969 386 223 1 1 385 94 479 1.81e-96 297
MS.gene059420.t1 AT4G21910 38.363 391 239 1 1 389 112 502 3.85e-96 296
MS.gene059420.t1 AT4G21910 38.363 391 239 1 1 389 112 502 3.85e-96 296
MS.gene059420.t1 AT4G21910 38.363 391 239 1 1 389 114 504 6.06e-96 296
MS.gene059420.t1 AT4G21910 38.363 391 239 1 1 389 114 504 6.06e-96 296
MS.gene059420.t1 AT4G21903 38.363 391 239 1 1 389 110 500 9.33e-96 295
MS.gene059420.t1 AT5G65380 40.256 390 231 2 1 388 95 484 9.41e-96 295
MS.gene059420.t1 AT1G33100 41.192 386 226 1 1 385 91 476 3.87e-95 293
MS.gene059420.t1 AT1G33080 41.192 386 226 1 1 385 94 479 1.58e-94 292
MS.gene059420.t1 AT1G33080 41.425 379 221 1 1 378 94 472 3.35e-92 286
MS.gene059420.t1 AT3G59030 38.442 385 235 1 1 383 109 493 1.10e-91 285
MS.gene059420.t1 AT3G03620 38.346 399 242 2 1 395 95 493 4.86e-91 283
MS.gene059420.t1 AT3G03620 38.346 399 242 2 1 395 95 493 4.86e-91 283
MS.gene059420.t1 AT4G21903 37.949 390 240 1 1 388 110 499 4.98e-91 283
MS.gene059420.t1 AT1G61890 40.230 348 204 3 1 345 105 451 9.76e-91 281
MS.gene059420.t1 AT5G44050 38.325 394 241 2 1 392 98 491 5.23e-90 280
MS.gene059420.t1 AT1G33090 38.601 386 236 1 1 385 94 479 8.18e-90 280
MS.gene059420.t1 AT5G17700 37.275 389 243 1 1 388 92 480 1.20e-84 266
MS.gene059420.t1 AT5G17700 37.275 389 243 1 1 388 92 480 1.20e-84 266
MS.gene059420.t1 AT5G10420 39.535 387 232 2 1 385 96 482 2.42e-82 260
MS.gene059420.t1 AT1G33110 40.645 310 183 1 1 309 94 403 5.58e-69 223
MS.gene059420.t1 AT2G04040 31.496 381 259 1 4 382 88 468 6.00e-64 212
MS.gene059420.t1 AT2G04070 30.971 381 261 1 4 382 88 468 2.84e-63 210
MS.gene059420.t1 AT5G52450 33.756 394 251 3 2 389 85 474 6.13e-63 209
MS.gene059420.t1 AT2G04080 30.709 381 262 1 4 382 88 468 9.79e-63 209
MS.gene059420.t1 AT2G04080 30.933 375 257 1 4 376 88 462 4.07e-61 204
MS.gene059420.t1 AT2G04050 30.867 392 268 2 1 390 85 475 9.14e-60 201
MS.gene059420.t1 AT1G15170 32.124 386 260 1 1 384 92 477 1.13e-59 201
MS.gene059420.t1 AT2G34360 31.486 397 254 7 2 392 86 470 5.50e-59 199
MS.gene059420.t1 AT3G59030 34.091 308 201 1 1 306 109 416 5.86e-59 197
MS.gene059420.t1 AT1G73700 32.581 399 257 5 2 394 83 475 4.78e-57 194
MS.gene059420.t1 AT1G15150 29.975 397 272 3 1 393 89 483 3.17e-56 192
MS.gene059420.t1 AT1G71140 29.897 388 262 3 1 382 84 467 4.92e-56 191
MS.gene059420.t1 AT1G66760 30.151 398 267 4 1 390 86 480 1.54e-55 190
MS.gene059420.t1 AT5G17700 34.853 307 199 1 1 306 92 398 1.84e-55 188
MS.gene059420.t1 AT1G15160 29.723 397 273 3 1 393 89 483 2.92e-55 189
MS.gene059420.t1 AT1G66760 31.510 384 255 3 1 379 86 466 3.52e-55 189
MS.gene059420.t1 AT2G04100 29.412 391 272 2 1 388 88 477 6.75e-55 188
MS.gene059420.t1 AT3G23550 30.890 382 258 2 1 378 89 468 1.66e-54 187
MS.gene059420.t1 AT1G15170 31.285 358 241 2 32 384 1 358 4.22e-54 183
MS.gene059420.t1 AT3G23560 30.933 375 257 1 1 373 97 471 8.77e-54 185
MS.gene059420.t1 AT2G04090 29.581 382 265 2 4 382 91 471 1.07e-53 185
MS.gene059420.t1 AT2G04100 30.079 379 261 2 1 376 88 465 1.08e-53 185
MS.gene059420.t1 AT1G15180 30.829 386 265 1 1 384 93 478 1.53e-52 182
MS.gene059420.t1 AT1G66780 27.735 393 264 4 1 382 93 476 4.32e-52 181
MS.gene059420.t1 AT1G15150 29.738 343 239 1 53 393 25 367 4.46e-51 176
MS.gene059420.t1 AT1G66760 30.178 338 234 1 44 379 1 338 1.07e-46 163
MS.gene059420.t1 AT1G64820 27.720 386 267 6 4 382 90 470 2.57e-46 166
MS.gene059420.t1 AT2G34360 27.525 396 229 5 2 392 86 428 6.37e-46 164
MS.gene059420.t1 AT4G29140 26.434 401 282 5 1 395 114 507 3.44e-37 141
MS.gene059420.t1 AT2G38510 23.810 399 294 5 1 393 64 458 1.99e-36 139
MS.gene059420.t1 AT1G71870 24.337 415 289 5 1 393 82 493 6.89e-36 137
MS.gene059420.t1 AT1G58340 24.156 385 284 3 1 380 116 497 5.12e-34 132
MS.gene059420.t1 AT3G23560 28.247 308 219 1 1 306 97 404 1.31e-33 130
MS.gene059420.t1 AT4G23030 27.068 399 280 5 1 393 91 484 2.49e-33 130
MS.gene059420.t1 AT5G19700 26.121 379 272 3 8 383 101 474 6.57e-33 129
MS.gene059420.t1 AT1G66760 28.296 311 215 3 1 306 86 393 7.75e-30 119
MS.gene059420.t1 AT5G52050 22.338 385 291 1 1 377 93 477 4.63e-29 118
MS.gene059420.t1 AT1G15180 27.692 260 186 1 49 306 21 280 2.30e-27 112
MS.gene059420.t1 AT4G22790 25.679 405 267 10 1 388 88 475 2.37e-23 102
MS.gene059420.t1 AT2G04066 28.571 133 95 0 250 382 31 163 1.58e-22 94.0
MS.gene059420.t1 AT5G49130 22.532 395 280 5 1 374 84 473 3.02e-22 99.0

Find 98 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGTCTTGGATGGCATTT+AGG 0.156838 6.3:-41931893 MS.gene059420:CDS
GGATGGCATTTAGGGAATTA+TGG 0.195593 6.3:-41931884 MS.gene059420:CDS
CTCTTGGTTCCTATTCAATT+TGG 0.201001 6.3:-41931755 MS.gene059420:intron
TTTGTGCTTGAAGAAATTTC+TGG 0.209530 6.3:+41932105 None:intergenic
CTTGGATTCAACCAGCATTT+GGG 0.216599 6.3:-41929859 MS.gene059420:CDS
ACTCCAATCTTAAAATTTCT+TGG 0.219319 6.3:-41932215 MS.gene059420:CDS
GGCCAGCTATTTCTTGTTCT+TGG 0.232684 6.3:+41932192 None:intergenic
CCTTGGATTCAACCAGCATT+TGG 0.237599 6.3:-41929860 MS.gene059420:CDS
CAGCTAATCGCATGAGAATT+TGG 0.242442 6.3:-41927708 MS.gene059420:CDS
TCTATGTGTTATAGGGTCTT+TGG 0.257937 6.3:-41929144 MS.gene059420:intron
GGAATTTACTAAGCTAAGTT+TGG 0.266034 6.3:-41931862 MS.gene059420:CDS
CTATGTGTTATAGGGTCTTT+GGG 0.275470 6.3:-41929143 MS.gene059420:intron
CAAGAAATAGCTGGCCTTGC+TGG 0.277228 6.3:-41932185 MS.gene059420:CDS
GGAGTTGCATATATATTAAT+AGG 0.281683 6.3:+41932233 None:intergenic
TGGAACGCCATGCTGCTTCT+TGG 0.289808 6.3:-41931396 MS.gene059420:CDS
AGCATCTAAGTACTCTTTCT+TGG 0.308166 6.3:-41930638 MS.gene059420:CDS
GAAAATAACAGTCATGAAAA+TGG 0.309892 6.3:+41930585 None:intergenic
GTATTTGATTGGGGAATAAC+TGG 0.310617 6.3:-41932005 MS.gene059420:CDS
TATATTGTTGGACTCCCTAT+TGG 0.314378 6.3:-41929889 MS.gene059420:CDS
AGTGTTTCACAAACTATTAC+AGG 0.328062 6.3:-41930460 MS.gene059420:intron
CTTCATCAGTGTATTTGATT+GGG 0.333826 6.3:-41932015 MS.gene059420:CDS
CGTTCCAACCCTGAATATTA+AGG 0.335206 6.3:+41931412 None:intergenic
GATGGCATTTAGGGAATTAT+GGG 0.335429 6.3:-41931883 MS.gene059420:CDS
TCTTCATCAGTGTATTTGAT+TGG 0.340775 6.3:-41932016 MS.gene059420:CDS
ATTGTCTTGGATGGCATTTA+GGG 0.356470 6.3:-41931892 MS.gene059420:CDS
AGTGAATTAGCATACCTTCT+TGG 0.371972 6.3:-41930502 MS.gene059420:CDS
TTGGCATGTTATTATATTGT+TGG 0.373715 6.3:-41929901 MS.gene059420:CDS
ACAATCATTATCCTTCTTGC+TGG 0.378972 6.3:-41931801 MS.gene059420:CDS
TTATTCTTACCAAATTGAAT+AGG 0.392292 6.3:+41931746 None:intergenic
GTGATATTGCTAATACAAAA+TGG 0.399962 6.3:-41932050 MS.gene059420:CDS
GATAATCCTGTGATTGCTCT+TGG 0.400996 6.3:-41931771 MS.gene059420:CDS
AATCCAAGGAAAATTCCAAT+AGG 0.410570 6.3:+41929874 None:intergenic
GTTGAACATAATTACCTCAT+TGG 0.418352 6.3:+41929051 None:intergenic
GAATTTACTAAGCTAAGTTT+GGG 0.429173 6.3:-41931861 MS.gene059420:CDS
GAATATTTAGGTGTGGTCAT+TGG 0.431076 6.3:-41929958 MS.gene059420:intron
GCTCAACTAATTTATGCCAT+TGG 0.431774 6.3:-41931939 MS.gene059420:CDS
ACACTGTGTGGCCAAGCTTA+TGG 0.439411 6.3:-41932335 MS.gene059420:CDS
GAGCTCTAACAAAGTTCAAA+AGG 0.446490 6.3:-41927686 MS.gene059420:CDS
AAAGAGTACTTAGATGCTCT+TGG 0.448789 6.3:+41930643 None:intergenic
TCATTATATATAAGACCAAC+TGG 0.457291 6.3:-41929075 MS.gene059420:CDS
ATGTCTCAGTCTCTTCTCAT+TGG 0.479393 6.3:-41930610 MS.gene059420:CDS
AACTAATTTATGCCATTGGT+TGG 0.481314 6.3:-41931935 MS.gene059420:CDS
TTAGGTGTGGTCATTGGATG+TGG 0.484725 6.3:-41929952 MS.gene059420:intron
ATCACTGTTGGTAAAGATGA+AGG 0.485049 6.3:+41930543 None:intergenic
ATCCAAGGAAAATTCCAATA+GGG 0.490049 6.3:+41929875 None:intergenic
CCAAATGCTGGTTGAATCCA+AGG 0.490422 6.3:+41929860 None:intergenic
TGTGGCCAAGCTTATGGTGC+AGG 0.490831 6.3:-41932329 MS.gene059420:CDS
ATAGCAATGGAAAACATGTA+TGG 0.491976 6.3:+41932140 None:intergenic
TATGGTTGGTTACATAAACT+TGG 0.494914 6.3:-41929920 MS.gene059420:CDS
TATCACAGGATGGGGATTTG+CGG 0.509898 6.3:-41931964 MS.gene059420:CDS
TGGATGTGGATGGCAAGTTA+TGG 0.516739 6.3:-41929938 MS.gene059420:CDS
GCCATTGGTTGGTGTAAAGA+AGG 0.520332 6.3:-41931924 MS.gene059420:CDS
GGCAAGTAATATCACAGGAT+GGG 0.520521 6.3:-41931973 MS.gene059420:CDS
AAGGATGGAATGGATTGTCT+TGG 0.523770 6.3:-41931905 MS.gene059420:CDS
GCAGGGCAATTTCAAAATGC+TGG 0.525936 6.3:-41932311 MS.gene059420:CDS
TTGGATTCAACCAGCATTTG+GGG 0.530104 6.3:-41929858 MS.gene059420:CDS
TTCATCAGTGTATTTGATTG+GGG 0.536727 6.3:-41932014 MS.gene059420:CDS
GGGAATAACTGGCTTAGCTA+TGG 0.539376 6.3:-41931994 MS.gene059420:CDS
ATTGCCCTGCACCATAAGCT+TGG 0.540907 6.3:+41932324 None:intergenic
ATCTAAGTACTCTTTCTTGG+TGG 0.541032 6.3:-41930635 MS.gene059420:CDS
GGCCAAGAACAAGAAATAGC+TGG 0.545873 6.3:-41932194 MS.gene059420:CDS
TTGGCCACACAGTGTTGCTA+TGG 0.555323 6.3:+41932343 None:intergenic
CTTTGGGGAGGCACAATGTG+CGG 0.557252 6.3:-41929127 MS.gene059420:CDS
GTGTTATAGGGTCTTTGGGG+AGG 0.558231 6.3:-41929139 MS.gene059420:intron
AATTACCTCATTGGTCCAGT+TGG 0.558399 6.3:+41929060 None:intergenic
GCAAGTAATATCACAGGATG+GGG 0.558420 6.3:-41931972 MS.gene059420:CDS
GAGCAATCACAGGATTATCA+AGG 0.563737 6.3:+41931775 None:intergenic
GAATAGCATATTTGCCAGCA+AGG 0.565399 6.3:+41932171 None:intergenic
TTAGCCTTAATATTCAGGGT+TGG 0.565916 6.3:-41931416 MS.gene059420:intron
TGGCAAGTAATATCACAGGA+TGG 0.567971 6.3:-41931974 MS.gene059420:CDS
TGGTGTAAAGAAGGATGGAA+TGG 0.573821 6.3:-41931915 MS.gene059420:CDS
GTTCGTGTCTCTAATACACT+TGG 0.574446 6.3:-41930676 MS.gene059420:CDS
GCTTGAAGAAATTTCTGGAT+GGG 0.575290 6.3:+41932110 None:intergenic
TTGGTTGGTGTAAAGAAGGA+TGG 0.577321 6.3:-41931920 MS.gene059420:CDS
GATGGGTAAATTGATAGCAA+TGG 0.579375 6.3:+41932127 None:intergenic
TGTGGATGGCAAGTTATGGT+TGG 0.586186 6.3:-41929934 MS.gene059420:CDS
ATGTATCAAATCATCACTGT+TGG 0.591841 6.3:+41930531 None:intergenic
TTGGACTAAGTACAGCACTA+AGG 0.594052 6.3:-41931377 MS.gene059420:intron
TGCTTGAAGAAATTTCTGGA+TGG 0.599379 6.3:+41932109 None:intergenic
GCTATGGCAAGTAATATCAC+AGG 0.600144 6.3:-41931978 MS.gene059420:CDS
TAGGAACCAAGAGCAATCAC+AGG 0.614787 6.3:+41931765 None:intergenic
CATATATATTAATAGGCAAG+AGG 0.615645 6.3:+41932240 None:intergenic
TCCTTCTTTACACCAACCAA+TGG 0.619153 6.3:+41931923 None:intergenic
ATGGAATGGATTGTCTTGGA+TGG 0.624219 6.3:-41931901 MS.gene059420:CDS
TATGTGTTATAGGGTCTTTG+GGG 0.630161 6.3:-41929142 MS.gene059420:intron
TAATGATCTGTTTAGAACAG+TGG 0.630951 6.3:-41931830 MS.gene059420:CDS
GTGTGGTCATTGGATGTGGA+TGG 0.631345 6.3:-41929948 MS.gene059420:CDS
TAACCATGGTGATACCAAGA+AGG 0.635742 6.3:+41930488 None:intergenic
TATCAAGGTAGCCAGCAAGA+AGG 0.638994 6.3:+41931790 None:intergenic
TGGATTCAACCAGCATTTGG+GGG 0.650440 6.3:-41929857 MS.gene059420:CDS
ACTTAGTCCAAGAAGCAGCA+TGG 0.659129 6.3:+41931389 None:intergenic
AGGCAAGAGGAGTATACAAG+TGG 0.663213 6.3:+41932253 None:intergenic
TGAAACACTGTTGATAACCA+TGG 0.671008 6.3:+41930474 None:intergenic
GTGGCCAAGCTTATGGTGCA+GGG 0.676034 6.3:-41932328 MS.gene059420:CDS
ATACCTTCTTGGTATCACCA+TGG 0.691516 6.3:-41930491 MS.gene059420:CDS
TAAGACCAACTGGACCAATG+AGG 0.702108 6.3:-41929065 MS.gene059420:intron
ACTGCCATAGCAACACTGTG+TGG 0.716579 6.3:-41932347 MS.gene059420:CDS
TCTTATATATAATGACTCCG+AGG 0.725031 6.3:+41929083 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTATTTTATTTTT+TGG - chr6.3:41932234-41932253 MS.gene059420:CDS 0.0%
!! ACATTAATTTCAAAATATAT+TGG - chr6.3:41928553-41928572 MS.gene059420:intron 10.0%
!! AGTTATTATACTTTAAATAA+CGG + chr6.3:41930043-41930062 None:intergenic 10.0%
!! TACTAATTAAATAAATATCT+AGG + chr6.3:41928879-41928898 None:intergenic 10.0%
!!! ATTATTTCTTTTAGAATAAA+AGG + chr6.3:41929210-41929229 None:intergenic 10.0%
!!! TAACTTTTATAAGAATATTT+AGG - chr6.3:41930058-41930077 MS.gene059420:intron 10.0%
!! AAAAAATAATTAACGATGAT+GGG - chr6.3:41931496-41931515 MS.gene059420:intron 15.0%
!! TAAAAAATAATTAACGATGA+TGG - chr6.3:41931495-41931514 MS.gene059420:intron 15.0%
!! TAATAAATCATATAATCAAG+TGG - chr6.3:41931143-41931162 MS.gene059420:intron 15.0%
!!! AATTATTTTGAGAAATAAAG+AGG - chr6.3:41931232-41931251 MS.gene059420:intron 15.0%
!!! ATAAACAACTTTAATGATTT+TGG + chr6.3:41930236-41930255 None:intergenic 15.0%
!!! CTTAATATGATATTTTGATT+CGG + chr6.3:41930449-41930468 None:intergenic 15.0%
!!! CTTATATTTTTTTCATACTA+GGG - chr6.3:41931934-41931953 MS.gene059420:CDS 15.0%
!!! GAAAAAAATATAAGATGTTT+TGG + chr6.3:41931928-41931947 None:intergenic 15.0%
!!! GTTTTTAAAATTGAACATTT+TGG - chr6.3:41929676-41929695 MS.gene059420:intron 15.0%
!!! TAAACAACTTTAATGATTTT+GGG + chr6.3:41930235-41930254 None:intergenic 15.0%
!!! TCTTATATTTTTTTCATACT+AGG - chr6.3:41931933-41931952 MS.gene059420:CDS 15.0%
!!! TCTTGAAATCATTTTTAAAT+AGG + chr6.3:41929009-41929028 None:intergenic 15.0%
!!! TTAATATGATATTTTGATTC+GGG + chr6.3:41930448-41930467 None:intergenic 15.0%
!!! TTCAAAATATATTGGTTTAT+TGG - chr6.3:41928561-41928580 MS.gene059420:intron 15.0%
!!! TTTTACATCTATTACAATTT+TGG - chr6.3:41929708-41929727 MS.gene059420:intron 15.0%
!! AAAATAGCAACAAATACTTT+AGG + chr6.3:41932219-41932238 None:intergenic 20.0%
!! AATTTACATCTATGTGTTAT+AGG - chr6.3:41930876-41930895 MS.gene059420:intron 20.0%
!! AGTTCTTTAGTCATTAATTT+GGG + chr6.3:41931962-41931981 None:intergenic 20.0%
!! ATCATCAATCAATAATTAGT+TGG + chr6.3:41929310-41929329 None:intergenic 20.0%
!! ATTTACATCTATGTGTTATA+GGG - chr6.3:41930877-41930896 MS.gene059420:intron 20.0%
!! CAAATGGAAAAAGTTATAAA+TGG + chr6.3:41931452-41931471 None:intergenic 20.0%
!! GTAATAGATGTAAAAATTGA+GGG + chr6.3:41929703-41929722 None:intergenic 20.0%
!! TAGATGTAAATTTGTAAGAA+AGG + chr6.3:41930868-41930887 None:intergenic 20.0%
!! TGATTAAACTGAAAGATATT+TGG + chr6.3:41930656-41930675 None:intergenic 20.0%
!! TGTAATAGATGTAAAAATTG+AGG + chr6.3:41929704-41929723 None:intergenic 20.0%
!! TTATTCTTACCAAATTGAAT+AGG + chr6.3:41928285-41928304 None:intergenic 20.0%
!! TTTAAAAATTGAACATGTAG+TGG + chr6.3:41931289-41931308 None:intergenic 20.0%
!! TTTATAAGAATATTTAGGTG+TGG - chr6.3:41930063-41930082 MS.gene059420:intron 20.0%
!! TTTCTGCTAAGATTTAAATT+CGG - chr6.3:41929791-41929810 MS.gene059420:intron 20.0%
!!! AAGTTTTAACCAACATATTT+AGG + chr6.3:41930701-41930720 None:intergenic 20.0%
!!! AGTGCTATTTTAGTTAAATT+TGG + chr6.3:41929087-41929106 None:intergenic 20.0%
!!! ATTTTTAGCCTTAATATTCA+GGG - chr6.3:41928608-41928627 MS.gene059420:intron 20.0%
!!! CATTTATAACTTTTTCCATT+TGG - chr6.3:41931450-41931469 MS.gene059420:intron 20.0%
!!! CTACATGTTCAATTTTTAAA+CGG - chr6.3:41931289-41931308 MS.gene059420:intron 20.0%
!!! CTATTTTACAACTGTTATTA+AGG - chr6.3:41929111-41929130 MS.gene059420:CDS 20.0%
!!! TAAGAAACTTTTCACTTTTT+AGG - chr6.3:41928716-41928735 MS.gene059420:intron 20.0%
!!! TAAGAAACTTTTCACTTTTT+AGG + chr6.3:41928735-41928716 None:intergenic 20.0%
!!! TAGTCAAAAGCAAAAAATTT+TGG - chr6.3:41931714-41931733 MS.gene059420:intron 20.0%
!!! TATTTTTAGCCTTAATATTC+AGG - chr6.3:41928607-41928626 MS.gene059420:intron 20.0%
!!! TTTTACAAAACTGATCTTTA+AGG - chr6.3:41930492-41930511 MS.gene059420:CDS 20.0%
!!! TTTTGTCATAATTTCACTTT+TGG - chr6.3:41929620-41929639 MS.gene059420:intron 20.0%
! AAAGAATTCTTTGCAAAACT+TGG + chr6.3:41931013-41931032 None:intergenic 25.0%
! AATCTTAGCAGAAATACTTA+TGG + chr6.3:41929785-41929804 None:intergenic 25.0%
! AATGTTATGCATCAAAGTTA+TGG + chr6.3:41929887-41929906 None:intergenic 25.0%
! ACTCCAATCTTAAAATTTCT+TGG - chr6.3:41927813-41927832 MS.gene059420:intron 25.0%
! AGTTGACACATTATAATCAT+AGG - chr6.3:41929182-41929201 MS.gene059420:intron 25.0%
! ATCAATTGACAAATATTACC+GGG + chr6.3:41931747-41931766 None:intergenic 25.0%
! ATCTTAGCAGAAATACTTAT+GGG + chr6.3:41929784-41929803 None:intergenic 25.0%
! CATATATATTAATAGGCAAG+AGG + chr6.3:41927791-41927810 None:intergenic 25.0%
! CATCAATTGACAAATATTAC+CGG + chr6.3:41931748-41931767 None:intergenic 25.0%
! CATTCAATAATTGATGTATG+TGG + chr6.3:41928760-41928741 None:intergenic 25.0%
! CTTTAACCATCAAAAGAAAA+GGG + chr6.3:41929851-41929870 None:intergenic 25.0%
! GAAAATAACAGTCATGAAAA+TGG + chr6.3:41929446-41929465 None:intergenic 25.0%
! GAATTTACTAAGCTAAGTTT+GGG - chr6.3:41928167-41928186 MS.gene059420:intron 25.0%
! GAGTTCTTTAGTCATTAATT+TGG + chr6.3:41931963-41931982 None:intergenic 25.0%
! GATTATAATGTGTCAACTTA+GGG + chr6.3:41929180-41929199 None:intergenic 25.0%
! GGAGTTGCATATATATTAAT+AGG + chr6.3:41927798-41927817 None:intergenic 25.0%
! GTGATATTGCTAATACAAAA+TGG - chr6.3:41927978-41927997 MS.gene059420:intron 25.0%
! TCATTATATATAAGACCAAC+TGG - chr6.3:41930953-41930972 MS.gene059420:intron 25.0%
! TGATTATAATGTGTCAACTT+AGG + chr6.3:41929181-41929200 None:intergenic 25.0%
! TTCAGAAAACATCAATACAA+TGG + chr6.3:41932138-41932157 None:intergenic 25.0%
! TTCTGCTAAGATTTAAATTC+GGG - chr6.3:41929792-41929811 MS.gene059420:intron 25.0%
! TTGGCATGTTATTATATTGT+TGG - chr6.3:41930127-41930146 MS.gene059420:intron 25.0%
! TTTAACCATCAAAAGAAAAG+GGG + chr6.3:41929850-41929869 None:intergenic 25.0%
!! AAAGGTTTAGTAGCAATTTT+TGG + chr6.3:41929972-41929991 None:intergenic 25.0%
!! AACTAACAAGAGTATATCAA+TGG + chr6.3:41928348-41928367 None:intergenic 25.0%
!! ATAACATTACTTTGAAGGAT+TGG - chr6.3:41929899-41929918 MS.gene059420:CDS 25.0%
!! ATTTTAAATGTGTAGTTGTG+GGG - chr6.3:41931367-41931386 MS.gene059420:intron 25.0%
!! CACAACTACACATTTAAAAT+GGG + chr6.3:41931367-41931386 None:intergenic 25.0%
!! CATTTTAAATGTGTAGTTGT+GGG - chr6.3:41931366-41931385 MS.gene059420:intron 25.0%
!! TCTTTTACGTCTTACAAAAT+TGG - chr6.3:41930283-41930302 MS.gene059420:intron 25.0%
!! TTGTTTTCTGATTATTCTCT+CGG - chr6.3:41931031-41931050 MS.gene059420:intron 25.0%
!!! AAAAATTTTGGTTCTAATCC+CGG - chr6.3:41931726-41931745 MS.gene059420:intron 25.0%
!!! AGTTTTAATCCATGAAATGT+AGG + chr6.3:41932098-41932117 None:intergenic 25.0%
!!! GGAGTATTGAGAAAAATATA+TGG + chr6.3:41929289-41929308 None:intergenic 25.0%
!!! TAAACAGAAGCACTTTTTTT+GGG + chr6.3:41930756-41930775 None:intergenic 25.0%
!!! TACTCACCGTTTTTTTTAAA+GGG + chr6.3:41930531-41930550 None:intergenic 25.0%
!!! TCAGTTTTGTAAAAATGAGT+TGG + chr6.3:41930486-41930505 None:intergenic 25.0%
!!! TGATTTTTTACCCAAAAGAA+AGG - chr6.3:41929747-41929766 MS.gene059420:intron 25.0%
!!! TTACTCACCGTTTTTTTTAA+AGG + chr6.3:41930532-41930551 None:intergenic 25.0%
AACTAATTTATGCCATTGGT+TGG - chr6.3:41928093-41928112 MS.gene059420:intron 30.0%
AATCCAAGGAAAATTCCAAT+AGG + chr6.3:41930157-41930176 None:intergenic 30.0%
ACCCACTATAATTTGAACTT+TGG - chr6.3:41931818-41931837 MS.gene059420:CDS 30.0%
ACTATTACAGGTGATTTACT+TGG - chr6.3:41929580-41929599 MS.gene059420:intron 30.0%
AGTGTTTCACAAACTATTAC+AGG - chr6.3:41929568-41929587 MS.gene059420:intron 30.0%
ATACTCTTTGAACTTGATGT+GGG - chr6.3:41931882-41931901 MS.gene059420:CDS 30.0%
ATAGCAATGGAAAACATGTA+TGG + chr6.3:41927891-41927910 None:intergenic 30.0%
ATCCAAGGAAAATTCCAATA+GGG + chr6.3:41930156-41930175 None:intergenic 30.0%
ATGTATCAAATCATCACTGT+TGG + chr6.3:41929500-41929519 None:intergenic 30.0%
CCACAACTACACATTTAAAA+TGG + chr6.3:41931368-41931387 None:intergenic 30.0%
CCCAAAGTTCAAATTATAGT+GGG + chr6.3:41931822-41931841 None:intergenic 30.0%
CCCACTATAATTTGAACTTT+GGG - chr6.3:41931819-41931838 MS.gene059420:CDS 30.0%
CCTTTAACCATCAAAAGAAA+AGG + chr6.3:41929852-41929871 None:intergenic 30.0%
CTTCATCAGTGTATTTGATT+GGG - chr6.3:41928013-41928032 MS.gene059420:intron 30.0%
GATGCATAACATTACTTTGA+AGG - chr6.3:41929894-41929913 MS.gene059420:CDS 30.0%
GATGTATGTAGTCCATATTA+TGG - chr6.3:41928753-41928772 MS.gene059420:intron 30.0%
GGAAAAAGTTATAAATGGAG+AGG + chr6.3:41931447-41931466 None:intergenic 30.0%
GGAATTTACTAAGCTAAGTT+TGG - chr6.3:41928166-41928185 MS.gene059420:intron 30.0%
GTAGATAAATGATGCCAAAT+AGG + chr6.3:41930734-41930753 None:intergenic 30.0%
GTTGAACATAATTACCTCAT+TGG + chr6.3:41930980-41930999 None:intergenic 30.0%
TATACTCTTTGAACTTGATG+TGG - chr6.3:41931881-41931900 MS.gene059420:CDS 30.0%
TATGTTATGGTATGCATCAA+AGG + chr6.3:41929990-41930009 None:intergenic 30.0%
TCAAATTCACCTACATTTCA+TGG - chr6.3:41932086-41932105 MS.gene059420:CDS 30.0%
TCTTATATATAATGACTCCG+AGG + chr6.3:41930948-41930967 None:intergenic 30.0%
TCTTCATCAGTGTATTTGAT+TGG - chr6.3:41928012-41928031 MS.gene059420:intron 30.0%
TTATATGGAATATGAACTGC+AGG - chr6.3:41932288-41932307 MS.gene059420:CDS 30.0%
TTCATCAGTGTATTTGATTG+GGG - chr6.3:41928014-41928033 MS.gene059420:intron 30.0%
TTTGTGCTTGAAGAAATTTC+TGG + chr6.3:41927926-41927945 None:intergenic 30.0%
! AAAAGAAAAGGGGTGATTTT+AGG + chr6.3:41929840-41929859 None:intergenic 30.0%
! AAGTTTCTTACATTTGAGAC+CGG - chr6.3:41928815-41928834 MS.gene059420:intron 30.0%
! AAGTTTCTTACATTTGAGAC+CGG + chr6.3:41928834-41928815 None:intergenic 30.0%
! ATGTTGGTTAAAACTTGTAG+TGG - chr6.3:41930705-41930724 MS.gene059420:intron 30.0%
! CCATTTTAAATGTGTAGTTG+TGG - chr6.3:41931365-41931384 MS.gene059420:intron 30.0%
! GTCAGTCCCTTTAAAAAAAA+CGG - chr6.3:41930522-41930541 MS.gene059420:CDS 30.0%
! TAATGATCTGTTTAGAACAG+TGG - chr6.3:41928198-41928217 MS.gene059420:intron 30.0%
! TATGGTTGGTTACATAAACT+TGG - chr6.3:41930108-41930127 MS.gene059420:intron 30.0%
!! AATTTGTTGATCTCACTTAG+TGG - chr6.3:41931584-41931603 MS.gene059420:intron 30.0%
!! ATTCTTCAGATTTTAGTCCT+CGG - chr6.3:41930928-41930947 MS.gene059420:intron 30.0%
!! CCTTTTCTTTTGATGGTTAA+AGG - chr6.3:41929849-41929868 MS.gene059420:intron 30.0%
!! TCTTTTGATGGTTAAAGGTA+TGG - chr6.3:41929854-41929873 MS.gene059420:CDS 30.0%
!!! CTAAACAGAAGCACTTTTTT+TGG + chr6.3:41930757-41930776 None:intergenic 30.0%
!!! TGGCCAAGAAATTTTAAGAT+TGG + chr6.3:41927819-41927838 None:intergenic 30.0%
AATATCACTCTTGAGAGTGA+AGG + chr6.3:41930017-41930036 None:intergenic 35.0%
ACAATCATTATCCTTCTTGC+TGG - chr6.3:41928227-41928246 MS.gene059420:intron 35.0%
ACTCTAATATATACTCCCTC+CGG + chr6.3:41928837-41928856 None:intergenic 35.0%
AGCATCTAAGTACTCTTTCT+TGG - chr6.3:41929390-41929409 MS.gene059420:intron 35.0%
AGTGAATTAGCATACCTTCT+TGG - chr6.3:41929526-41929545 MS.gene059420:intron 35.0%
ATCTAAGTACTCTTTCTTGG+TGG - chr6.3:41929393-41929412 MS.gene059420:intron 35.0%
ATTGTCTTGGATGGCATTTA+GGG - chr6.3:41928136-41928155 MS.gene059420:intron 35.0%
CAACTCTTCTTACACTTTGT+TGG - chr6.3:41932017-41932036 MS.gene059420:CDS 35.0%
CATTCTACCTTTACTATGCT+TGG - chr6.3:41930798-41930817 MS.gene059420:intron 35.0%
CTATGTGTTATAGGGTCTTT+GGG - chr6.3:41930885-41930904 MS.gene059420:intron 35.0%
CTCTTGGTTCCTATTCAATT+TGG - chr6.3:41928273-41928292 MS.gene059420:intron 35.0%
GAATATTTAGGTGTGGTCAT+TGG - chr6.3:41930070-41930089 MS.gene059420:intron 35.0%
GAGTGAAGGCTTATATGTTA+TGG + chr6.3:41930003-41930022 None:intergenic 35.0%
GATGGCATTTAGGGAATTAT+GGG - chr6.3:41928145-41928164 MS.gene059420:intron 35.0%
GATGTATGTGGTCCATAATA+TGG + chr6.3:41928768-41928787 None:intergenic 35.0%
GCCCAAAGTTCAAATTATAG+TGG + chr6.3:41931823-41931842 None:intergenic 35.0%
GCTCAACTAATTTATGCCAT+TGG - chr6.3:41928089-41928108 MS.gene059420:intron 35.0%
GTATTTGATTGGGGAATAAC+TGG - chr6.3:41928023-41928042 MS.gene059420:intron 35.0%
GTGGTGATAGTTTATCTTGT+CGG + chr6.3:41931270-41931289 None:intergenic 35.0%
TATATTGTTGGACTCCCTAT+TGG - chr6.3:41930139-41930158 MS.gene059420:intron 35.0%
TATGTGTTATAGGGTCTTTG+GGG - chr6.3:41930886-41930905 MS.gene059420:intron 35.0%
TCCTAGAGTCCTAAATATGT+TGG - chr6.3:41930689-41930708 MS.gene059420:intron 35.0%
TCTATGTGTTATAGGGTCTT+TGG - chr6.3:41930884-41930903 MS.gene059420:intron 35.0%
TCTCGTAACTACATCTCAAA+TGG + chr6.3:41932061-41932080 None:intergenic 35.0%
TGTGTCTCTATCTTTCCAAA+TGG + chr6.3:41931468-41931487 None:intergenic 35.0%
TTAAGCTTGCCGAGATAATA+TGG - chr6.3:41930415-41930434 MS.gene059420:intron 35.0%
TTATCTTGTCGGTCTGATTA+AGG + chr6.3:41931259-41931278 None:intergenic 35.0%
! AATCACCCCTTTTCTTTTGA+TGG - chr6.3:41929842-41929861 MS.gene059420:intron 35.0%
! ACCAACATATTTAGGACTCT+AGG + chr6.3:41930693-41930712 None:intergenic 35.0%
! ATCACTGTTGGTAAAGATGA+AGG + chr6.3:41929488-41929507 None:intergenic 35.0%
! GAGCTCTAACAAAGTTCAAA+AGG - chr6.3:41932342-41932361 MS.gene059420:CDS 35.0%
! GAGGGAGTATATATTAGAGT+AGG - chr6.3:41928837-41928856 MS.gene059420:intron 35.0%
! GATGGGTAAATTGATAGCAA+TGG + chr6.3:41927904-41927923 None:intergenic 35.0%
! GCTTGAAGAAATTTCTGGAT+GGG + chr6.3:41927921-41927940 None:intergenic 35.0%
! TCAGAGAGCAAACACTTTTA+AGG - chr6.3:41931845-41931864 MS.gene059420:CDS 35.0%
! TGATGGTTAAAGGTATGGAT+TGG - chr6.3:41929859-41929878 MS.gene059420:CDS 35.0%
! TGCTTGAAGAAATTTCTGGA+TGG + chr6.3:41927922-41927941 None:intergenic 35.0%
! TGCTTTTCCAAGCATAGTAA+AGG + chr6.3:41930808-41930827 None:intergenic 35.0%
!! AAAGAGTACTTAGATGCTCT+TGG + chr6.3:41929388-41929407 None:intergenic 35.0%
!! AGTTTTGTCATGTAGCATCA+AGG + chr6.3:41929153-41929172 None:intergenic 35.0%
!! TGAAACACTGTTGATAACCA+TGG + chr6.3:41929557-41929576 None:intergenic 35.0%
!! TTAGCCTTAATATTCAGGGT+TGG - chr6.3:41928612-41928631 MS.gene059420:intron 35.0%
AATTACCTCATTGGTCCAGT+TGG + chr6.3:41930971-41930990 None:intergenic 40.0%
ACTTGTAGTGGTTGCCTATT+TGG - chr6.3:41930717-41930736 MS.gene059420:intron 40.0%
ATACCTTCTTGGTATCACCA+TGG - chr6.3:41929537-41929556 MS.gene059420:intron 40.0%
ATGTCTCAGTCTCTTCTCAT+TGG - chr6.3:41929418-41929437 MS.gene059420:intron 40.0%
CAGCTAATCGCATGAGAATT+TGG - chr6.3:41932320-41932339 MS.gene059420:CDS 40.0%
CCTGCATATAGTATGCAACA+CGG - chr6.3:41931413-41931432 MS.gene059420:CDS 40.0%
CGTGTTGCATACTATATGCA+GGG + chr6.3:41931415-41931434 None:intergenic 40.0%
CGTTCCAACCCTGAATATTA+AGG + chr6.3:41928619-41928638 None:intergenic 40.0%
CTGCATATAGTATGCAACAC+GGG - chr6.3:41931414-41931433 MS.gene059420:CDS 40.0%
CTTGGATTCAACCAGCATTT+GGG - chr6.3:41930169-41930188 MS.gene059420:intron 40.0%
GAATAGCATATTTGCCAGCA+AGG + chr6.3:41927860-41927879 None:intergenic 40.0%
GAGCAATCACAGGATTATCA+AGG + chr6.3:41928256-41928275 None:intergenic 40.0%
GATAATCCTGTGATTGCTCT+TGG - chr6.3:41928257-41928276 MS.gene059420:intron 40.0%
GATTGTCTTGGATGGCATTT+AGG - chr6.3:41928135-41928154 MS.gene059420:intron 40.0%
GCAAGTAATATCACAGGATG+GGG - chr6.3:41928056-41928075 MS.gene059420:intron 40.0%
GCTATGGCAAGTAATATCAC+AGG - chr6.3:41928050-41928069 MS.gene059420:intron 40.0%
GGATGGCATTTAGGGAATTA+TGG - chr6.3:41928144-41928163 MS.gene059420:intron 40.0%
GGCAAGTAATATCACAGGAT+GGG - chr6.3:41928055-41928074 MS.gene059420:intron 40.0%
GGTCAACTGCCATATTATCT+CGG + chr6.3:41930427-41930446 None:intergenic 40.0%
GTGTTGCATACTATATGCAG+GGG + chr6.3:41931414-41931433 None:intergenic 40.0%
GTTCGTGTCTCTAATACACT+TGG - chr6.3:41929352-41929371 MS.gene059420:intron 40.0%
TAACCATGGTGATACCAAGA+AGG + chr6.3:41929543-41929562 None:intergenic 40.0%
TCCTTCTTTACACCAACCAA+TGG + chr6.3:41928108-41928127 None:intergenic 40.0%
TGGCAAGTAATATCACAGGA+TGG - chr6.3:41928054-41928073 MS.gene059420:intron 40.0%
TGGTGTAAAGAAGGATGGAA+TGG - chr6.3:41928113-41928132 MS.gene059420:intron 40.0%
TTGGACTAAGTACAGCACTA+AGG - chr6.3:41928651-41928670 MS.gene059420:intron 40.0%
TTGGATTCAACCAGCATTTG+GGG - chr6.3:41930170-41930189 MS.gene059420:intron 40.0%
! AGCGAGTTTCACCTTTCTTT+TGG + chr6.3:41929761-41929780 None:intergenic 40.0%
! CTCCCTATTGGAATTTTCCT+TGG - chr6.3:41930151-41930170 MS.gene059420:intron 40.0%
! GCGAGTTTCACCTTTCTTTT+GGG + chr6.3:41929760-41929779 None:intergenic 40.0%
! TTCTTACATTTGAGACCGGA+GGG - chr6.3:41928819-41928838 MS.gene059420:intron 40.0%
! TTCTTACATTTGAGACCGGA+GGG + chr6.3:41928838-41928819 None:intergenic 40.0%
! TTGGTTGGTGTAAAGAAGGA+TGG - chr6.3:41928108-41928127 MS.gene059420:intron 40.0%
! TTTCTTACATTTGAGACCGG+AGG - chr6.3:41928818-41928837 MS.gene059420:intron 40.0%
! TTTCTTACATTTGAGACCGG+AGG + chr6.3:41928837-41928818 None:intergenic 40.0%
!! AAGGATGGAATGGATTGTCT+TGG - chr6.3:41928123-41928142 MS.gene059420:intron 40.0%
!! ATGGAATGGATTGTCTTGGA+TGG - chr6.3:41928127-41928146 MS.gene059420:intron 40.0%
!! CGTCTGTCAATTTGTTGATC+TGG - chr6.3:41931576-41931595 MS.gene059420:intron 40.0%
!! CTATGCTTGGAAAAGCACTA+TGG - chr6.3:41930811-41930830 MS.gene059420:intron 40.0%
ACTTAGTCCAAGAAGCAGCA+TGG + chr6.3:41928642-41928661 None:intergenic 45.0%
CCGTGTTGCATACTATATGC+AGG + chr6.3:41931416-41931435 None:intergenic 45.0%
CCTTGGATTCAACCAGCATT+TGG - chr6.3:41930168-41930187 MS.gene059420:intron 45.0%
GCAGGGCAATTTCAAAATGC+TGG - chr6.3:41927717-41927736 MS.gene059420:CDS 45.0%
GGCCAAGAACAAGAAATAGC+TGG - chr6.3:41927834-41927853 MS.gene059420:intron 45.0%
TAAACTCAACGTACTCCCTC+CGG - chr6.3:41928684-41928703 MS.gene059420:intron 45.0%
TAAGACCAACTGGACCAATG+AGG - chr6.3:41930963-41930982 MS.gene059420:intron 45.0%
TAGAGACACGAACACTTGCA+AGG + chr6.3:41929345-41929364 None:intergenic 45.0%
TAGGAACCAAGAGCAATCAC+AGG + chr6.3:41928266-41928285 None:intergenic 45.0%
TATCAAGGTAGCCAGCAAGA+AGG + chr6.3:41928241-41928260 None:intergenic 45.0%
TATCACAGGATGGGGATTTG+CGG - chr6.3:41928064-41928083 MS.gene059420:intron 45.0%
TGGATGTGGATGGCAAGTTA+TGG - chr6.3:41930090-41930109 MS.gene059420:intron 45.0%
TGGATTCAACCAGCATTTGG+GGG - chr6.3:41930171-41930190 MS.gene059420:intron 45.0%
TGTGGATGGCAAGTTATGGT+TGG - chr6.3:41930094-41930113 MS.gene059420:intron 45.0%
TTAGGTGTGGTCATTGGATG+TGG - chr6.3:41930076-41930095 MS.gene059420:intron 45.0%
! AGGCAAGAGGAGTATACAAG+TGG + chr6.3:41927778-41927797 None:intergenic 45.0%
! ATGTGTAGTTGTGGGGTGTT+CGG - chr6.3:41931374-41931393 MS.gene059420:intron 45.0%
! CCAAATGCTGGTTGAATCCA+AGG + chr6.3:41930171-41930190 None:intergenic 45.0%
! GCCATTGGTTGGTGTAAAGA+AGG - chr6.3:41928104-41928123 MS.gene059420:intron 45.0%
! GGGAATAACTGGCTTAGCTA+TGG - chr6.3:41928034-41928053 MS.gene059420:intron 45.0%
!! GGCCAGCTATTTCTTGTTCT+TGG + chr6.3:41927839-41927858 None:intergenic 45.0%
!!! ATTTTATTTTATAGTTTATA+TGG - chr6.3:41932273-41932292 MS.gene059420:CDS 5.0%
ACACTGTGTGGCCAAGCTTA+TGG - chr6.3:41927693-41927712 MS.gene059420:CDS 50.0%
ACTGCCATAGCAACACTGTG+TGG - chr6.3:41927681-41927700 MS.gene059420:CDS 50.0%
ATACCTTCACCCCCAAATGC+TGG + chr6.3:41930183-41930202 None:intergenic 50.0%
ATTGCCCTGCACCATAAGCT+TGG + chr6.3:41927707-41927726 None:intergenic 50.0%
GTGTGGTCATTGGATGTGGA+TGG - chr6.3:41930080-41930099 MS.gene059420:intron 50.0%
! GTGTTATAGGGTCTTTGGGG+AGG - chr6.3:41930889-41930908 MS.gene059420:intron 50.0%
! TTGGCCACACAGTGTTGCTA+TGG + chr6.3:41927688-41927707 None:intergenic 50.0%
!! CAAGAAATAGCTGGCCTTGC+TGG - chr6.3:41927843-41927862 MS.gene059420:intron 50.0%
!! CGATGATGGGACTCACTTAG+TGG - chr6.3:41931509-41931528 MS.gene059420:intron 50.0%
CAACCAGCATTTGGGGGTGA+AGG - chr6.3:41930177-41930196 MS.gene059420:intron 55.0%
GTGGCCAAGCTTATGGTGCA+GGG - chr6.3:41927700-41927719 MS.gene059420:CDS 55.0%
TGTGGCCAAGCTTATGGTGC+AGG - chr6.3:41927699-41927718 MS.gene059420:CDS 55.0%
! CTTTGGGGAGGCACAATGTG+CGG - chr6.3:41930901-41930920 MS.gene059420:intron 55.0%
! TGGAACGCCATGCTGCTTCT+TGG - chr6.3:41928632-41928651 MS.gene059420:intron 55.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 41927675 41932375 41927675 ID=MS.gene059420
chr6.3 mRNA 41927675 41932375 41927675 ID=MS.gene059420.t1;Parent=MS.gene059420
chr6.3 exon 41931756 41932375 41931756 ID=MS.gene059420.t1.exon1;Parent=MS.gene059420.t1
chr6.3 CDS 41931756 41932375 41931756 ID=cds.MS.gene059420.t1;Parent=MS.gene059420.t1
chr6.3 exon 41931378 41931434 41931378 ID=MS.gene059420.t1.exon2;Parent=MS.gene059420.t1
chr6.3 CDS 41931378 41931434 41931378 ID=cds.MS.gene059420.t1;Parent=MS.gene059420.t1
chr6.3 exon 41930461 41930699 41930461 ID=MS.gene059420.t1.exon3;Parent=MS.gene059420.t1
chr6.3 CDS 41930461 41930699 41930461 ID=cds.MS.gene059420.t1;Parent=MS.gene059420.t1
chr6.3 exon 41929852 41929970 41929852 ID=MS.gene059420.t1.exon4;Parent=MS.gene059420.t1
chr6.3 CDS 41929852 41929970 41929852 ID=cds.MS.gene059420.t1;Parent=MS.gene059420.t1
chr6.3 exon 41929066 41929152 41929066 ID=MS.gene059420.t1.exon5;Parent=MS.gene059420.t1
chr6.3 CDS 41929066 41929152 41929066 ID=cds.MS.gene059420.t1;Parent=MS.gene059420.t1
chr6.3 exon 41927675 41927740 41927675 ID=MS.gene059420.t1.exon6;Parent=MS.gene059420.t1
chr6.3 CDS 41927675 41927740 41927675 ID=cds.MS.gene059420.t1;Parent=MS.gene059420.t1
Gene Sequence

>MS.gene059420

ATGTCAACTGCCATAGCAACACTGTGTGGCCAAGCTTATGGTGCAGGGCAATTTCAAAATGCTGGTATTTATGTTCAAAGATCATGTATTATACTCTTCACCACTTGTATACTCCTCTTGCCTATTAATATATATGCAACTCCAATCTTAAAATTTCTTGGCCAAGAACAAGAAATAGCTGGCCTTGCTGGCAAATATGCTATTCTTATAACTCCATACATGTTTTCCATTGCTATCAATTTACCCATCCAGAAATTTCTTCAAGCACAAAGTGAAGTTAAAGTTATTATGTACATAGCAATTGTGATATTGCTAATACAAAATGGTCTACTTTATATCTTCATCAGTGTATTTGATTGGGGAATAACTGGCTTAGCTATGGCAAGTAATATCACAGGATGGGGATTTGCGGTTGCTCAACTAATTTATGCCATTGGTTGGTGTAAAGAAGGATGGAATGGATTGTCTTGGATGGCATTTAGGGAATTATGGGAATTTACTAAGCTAAGTTTGGGTTCATCTGTAATGATCTGTTTAGAACAGTGGTATACTACAATCATTATCCTTCTTGCTGGCTACCTTGATAATCCTGTGATTGCTCTTGGTTCCTATTCAATTTGGTAAGAATAAGATAATAATTTTTTTTTCTGTCTAGTTACACTTTAATTTGCCATTGATATACTCTTGTTAGTTTAATTTTGATATATTATGAATAAAATGTTACATTGTCAATAAATCACAATCAATCATACTTGACTTTTTAGAAGTAATTATGATTCTTTTTTAAAAAATGCAATTATGATTAAAATTAAATATTTTTAATCATTTGACAATTATATTTTAAAATAGTTTAATTTTAAAAATATTTTTATTTTTTTACATTAATTTCAAAATATATTGGTTTATTGGTTTTCTTCAAATTTTAACTTTTATATTTTTAGCCTTAATATTCAGGGTTGGAACGCCATGCTGCTTCTTGGACTAAGTACAGCACTAAGGTGAGTGACTATAAACTCAACGTACTCCCTCCGGTCTCAAATGTAAGAAACTTTTCACTTTTTAGGTTCATTCAATAATTGATGTATGTAGTCCATATTATGGACCACATACATCAATTATTGAATGAACCTAAAAAGTGAAAAGTTTCTTACATTTGAGACCGGAGGGAGTATATATTAGAGTAGGAATTGTACATTGTAAACCTAGATATTTATTTAATTAGTATTTAAGATATTTATTACAATTCTTTTTTAAACTTACTTGTAATTTTGCATAATGTTTATGTATTAGAATGTTATACTATTCTCATTTTTGTCACAATTTCTCAAAAACCTATTTAAAAATGATTTCAAGAACTATAAAATAAAAAGTAATTAGCTATTTTTTAGTATATCATTACTTATCTTCAACCAAATTTAACTAAAATAGCACTATAACTATTTTACAACTGTTATTAAGGAAATTTGAACTTCTCTCCTTGATGCTACATGACAAAACTATTACCCTAAGTTGACACATTATAATCATAGGCACCTTTTATTCTAAAAGAAATAATTAAAATTTAAAATGAAATAAGATTTTATAAGATGTTGATTTTGATTATATAGTTTTCCATATATTTTTCTCAATACTCCAACTAATTATTGATTGATGATTTGATTCTAATGCCTTGCAAGTGTTCGTGTCTCTAATACACTTGGAATGTCACATCCAAGAGCATCTAAGTACTCTTTCTTGGTGGCAATGTCTCAGTCTCTTCTCATTGGAACCATTTTCATGACTGTTATTTTCTTGAGTAAAGAAAAGTTTGCCTTCATCTTTACCAACAGTGATGATTTGATACATGCTGCAAGTGAATTAGCATACCTTCTTGGTATCACCATGGTTATCAACAGTGTTTCACAAACTATTACAGGTGATTTACTTGGTTTCGTGAGTAGAAATATTTTGTCATAATTTCACTTTTGGTCTCTATTTTATCAATCTCATTAAAATAATGTTGTTTTTAAAATTGAACATTTTGGACCCTCAATTTTTACATCTATTACAATTTTGGTAATAAGTAATAACATTGATTTTTTACCCAAAAGAAAGGTGAAACTCGCTCCCATAAGTATTTCTGCTAAGATTTAAATTCGGGTTTTAAATCACAATTTTTTAGACCTAAAATCACCCCTTTTCTTTTGATGGTTAAAGGTATGGATTGGCACCATAACTTTGATGCATAACATTACTTTGAAGGATTGGAAAATTCAATTAAAAAAATTATTTTATTTGCGTGATAAAACAAGAGACCAAAAATTGCTACTAAACCTTTGATGCATACCATAACATATAAGCCTTCACTCTCAAGAGTGATATTACACCGTTATTTAAAGTATAATAACTTTTATAAGAATATTTAGGTGTGGTCATTGGATGTGGATGGCAAGTTATGGTTGGTTACATAAACTTGGCATGTTATTATATTGTTGGACTCCCTATTGGAATTTTCCTTGGATTCAACCAGCATTTGGGGGTGAAGGTATAAAGTTATTCTTGCTCTAAATTGTATATTCCCAAAATCATTAAAGTTGTTTATATTTCTATTATAAGTTTTTATGTGAAGTCTTTTACGTCTTACAAAATTGGTTTGTAATATGTTGAGTGTTACACTTTAAAATCTTCTTTCAAATTTTATCTATTTTCATTGTAATACTTGAATTTTTCTAACATATACACTTACTCGCGCTAAACACTATTAAGCTTGCCGAGATAATATGGCAGTTGACCCGAATCAAAATATCATATTAAGTTTTTGTATTAAAACCAACTCATTTTTACAAAACTGATCTTTAAGGTGAGAAAGTCAGTCCCTTTAAAAAAAACGGTGAGTAAGTCAGTTTTTATAAACTCTTTTAAAGTTGAAATCTTATCTCATTCAATATGTGATTTGTATTATTCTTAATCACATATCTAAGAGCATTTGATAGAATGATCCAAATATCTTTCAGTTTAATCAGAGTCTTAGAATCTCCTAGAGTCCTAAATATGTTGGTTAAAACTTGTAGTGGTTGCCTATTTGGCATCATTTATCTACCCAAAAAAAGTGCTTCTGTTTAGAATATTTACATTTAAATTTGACATTCTACCTTTACTATGCTTGGAAAAGCACTATGGCTATGTGCAACTTATATTTTATATATGATTTCCTTTCTTACAAATTTACATCTATGTGTTATAGGGTCTTTGGGGAGGCACAATGTGCGGCAATATTCTTCAGATTTTAGTCCTCGGAGTCATTATATATAAGACCAACTGGACCAATGAGGTAATTATGTTCAACTATTTTCAATCCAAGTTTTGCAAAGAATTCTTTGTTTTCTGATTATTCTCTCGGAACTTTCGAACAATATGAGTTAAAATCTTCTCTATTTTACAAAATAAATGAAAGATTGTATTTGAAAAAAGATAGATACAAAAAATAGATAATAAATCATATAATCAAGTGGATCTCTCGATGATTAATTATTCTTAAATCTTTTGTAATTTATTTTTGTCTATCTTTTTCTAAATGAAATTATTTTGAGAAATAAAGAGGACCTTAATCAGACCGACAAGATAAACTATCACCACTACATGTTCAATTTTTAAACGGTTTAAACAATATTTTTTTTATTTTTATCAAATAGTTTAGTGACTAGAACTCACCCATTTTAAATGTGTAGTTGTGGGGTGTTCGGAGTTCGAAGCTCTACCCCTGCATATAGTATGCAACACGGGTTTAAATCCTCTCCATTTATAACTTTTTCCATTTGGAAAGATAGAGACACATAAAAAGTAAAAAATAATTAACGATGATGGGACTCACTTAGTGGTAGAACTCATCACTTAGATTTAATGTCTATCTCTTTCTAAATTGCGTCTGTCAATTTGTTGATCTCACTTAGTGGTAGAACTCATCACTTAGATTTAATGTCTATCTCTTTCTAAATTGCGTCTGTCAATTTGTTGATCTGGTGCGTGCATATATATTTGTTTTATAGCAACAAATAAACTTTAGTCAAAAGCAAAAAATTTTGGTTCTAATCCCGGTAATATTTGTCAATTGATGTATGTTTTAGTGTTTATAATATATAGATCGTCTAAAAAATAAAAAATTTAACCCACTATAATTTGAACTTTGGGCTTTCAGAGAGCAAACACTTTTAAGGTATTCTAACAGCTTATACTCTTTGAACTTGATGTGGGACTAATTCTCTGAGTCGACACCAAAACATCTTATATTTTTTTCATACTAGGGCTCCCAAATTAATGACTAAAGAACTCAAATTTAGATTCTTTTTTAGTAGAGCTATTTTGTCAACTCTTCTTACACTTTGTTGGTAGATCACATATTTTTTACCATTTGAGATGTAGTTACGAGATTATGTCAAATTCACCTACATTTCATGGATTAAAACTAAACTAAATACTTTAAACCATTGTATTGATGTTTTCTGAATTTTAGATGTACATACTCGAGTTTAGCAATGTTACACTTTTTGATCATAAATTTCAATCCTAAAGTATTTGTTGCTATTTTTTTTATTTTATTTTTTGGTACAATATTTGTTGCTATTTTATTTTATAGTTTATATGGAATATGAACTGCAGGTAGAGCAAACAGCTAATCGCATGAGAATTTGGAGCTCTAACAAAGTTCAAAAGGACATCATTTGA

Protein sequence

>MS.gene059420.t1

MSTAIATLCGQAYGAGQFQNAGIYVQRSCIILFTTCILLLPINIYATPILKFLGQEQEIAGLAGKYAILITPYMFSIAINLPIQKFLQAQSEVKVIMYIAIVILLIQNGLLYIFISVFDWGITGLAMASNITGWGFAVAQLIYAIGWCKEGWNGLSWMAFRELWEFTKLSLGSSVMICLEQWYTTIIILLAGYLDNPVIALGSYSICLNIQGWNAMLLLGLSTALSVRVSNTLGMSHPRASKYSFLVAMSQSLLIGTIFMTVIFLSKEKFAFIFTNSDDLIHAASELAYLLGITMVINSVSQTITGVVIGCGWQVMVGYINLACYYIVGLPIGIFLGFNQHLGVKGLWGGTMCGNILQILVLGVIIYKTNWTNEVEQTANRMRIWSSNKVQKDII