AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85207

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85207.t1 MTR_8g011350 97.561 164 4 0 46 209 211 374 6.00e-116 341
MS.gene85207.t1 MTR_8g011350 88.372 43 5 0 4 46 92 134 9.42e-18 82.8
MS.gene85207.t1 MTR_8g011350 97.561 164 4 0 46 209 211 374 6.15e-116 341
MS.gene85207.t1 MTR_8g011350 88.372 43 5 0 4 46 92 134 1.00e-17 82.4
MS.gene85207.t1 MTR_7g051430 59.639 166 64 3 46 209 210 374 9.24e-65 207
MS.gene85207.t1 MTR_7g051430 69.767 43 13 0 4 46 91 133 1.09e-12 67.8
MS.gene85207.t1 MTR_7g051430 59.639 166 64 3 46 209 210 374 1.51e-63 207
MS.gene85207.t1 MTR_7g051430 69.767 43 13 0 4 46 91 133 1.56e-12 67.4
MS.gene85207.t1 MTR_7g080180 54.706 170 67 4 46 207 210 377 1.57e-54 182
MS.gene85207.t1 MTR_7g080180 81.579 38 7 0 9 46 96 133 4.60e-14 71.6
MS.gene85207.t1 MTR_7g080180 54.706 170 67 4 46 207 210 377 2.53e-54 182
MS.gene85207.t1 MTR_7g080180 81.579 38 7 0 9 46 96 133 4.78e-14 71.6
MS.gene85207.t1 MTR_4g021535 30.172 232 97 8 9 209 103 300 2.26e-18 84.3
MS.gene85207.t1 MTR_2g018590 44.737 76 39 2 46 119 214 288 9.37e-14 70.9
MS.gene85207.t1 MTR_0024s0320 85.714 35 5 0 46 80 39 73 9.96e-14 67.8
MS.gene85207.t1 MTR_2g018630 29.518 166 78 7 46 209 112 240 1.70e-13 69.7
MS.gene85207.t1 MTR_2g018630 29.518 166 78 7 46 209 217 345 3.55e-13 69.3
MS.gene85207.t1 MTR_4g021520 44.000 75 39 2 46 118 220 293 1.58e-12 67.4
MS.gene85207.t1 MTR_4g021520 25.980 204 133 6 46 239 220 415 2.11e-12 66.6
MS.gene85207.t1 MTR_2g018600 38.158 76 44 2 46 119 214 288 5.90e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85207.t1 AT4G12910 57.927 164 67 1 46 209 215 376 1.12e-62 203
MS.gene85207.t1 AT4G12910 76.316 38 9 0 9 46 101 138 9.84e-12 65.1
MS.gene85207.t1 AT4G12910 57.927 164 67 1 46 209 215 376 2.23e-62 204
MS.gene85207.t1 AT4G12910 76.316 38 9 0 9 46 101 138 1.04e-11 64.7
MS.gene85207.t1 AT3G25420 55.233 172 71 2 46 213 208 377 3.25e-60 198
MS.gene85207.t1 AT2G22920 40.860 93 53 1 46 136 26 118 3.52e-15 73.6
MS.gene85207.t1 AT2G22920 40.860 93 53 1 46 136 205 297 8.14e-15 73.2
MS.gene85207.t1 AT2G22920 40.860 93 53 1 46 136 205 297 1.01e-14 73.6
MS.gene85207.t1 AT2G22920 40.860 93 53 1 46 136 205 297 1.16e-14 73.6
MS.gene85207.t1 AT5G09640 54.839 62 26 1 46 105 207 268 4.49e-14 72.0
MS.gene85207.t1 AT1G73270 38.889 90 53 1 46 133 213 302 7.99e-13 68.2
MS.gene85207.t1 AT1G73270 38.889 90 53 1 46 133 213 302 8.62e-13 68.2
MS.gene85207.t1 AT2G22980 38.889 90 53 1 46 133 84 173 1.83e-12 66.2
MS.gene85207.t1 AT2G22980 38.889 90 53 1 46 133 201 290 2.45e-12 66.6
MS.gene85207.t1 AT2G22980 38.889 90 53 1 46 133 201 290 2.84e-12 66.6
MS.gene85207.t1 AT2G22980 38.889 90 53 1 46 133 201 290 3.04e-12 66.2
MS.gene85207.t1 AT2G22980 38.889 90 53 1 46 133 203 292 3.22e-12 65.9
MS.gene85207.t1 AT2G22970 42.105 76 41 2 46 119 205 279 3.19e-11 63.2
MS.gene85207.t1 AT2G22970 42.105 76 41 2 46 119 205 279 3.30e-11 63.2
MS.gene85207.t1 AT2G22970 42.105 76 41 2 46 119 205 279 3.62e-11 63.2
MS.gene85207.t1 AT2G22970 42.105 76 41 2 46 119 205 279 4.86e-11 62.4
MS.gene85207.t1 AT2G22990 38.158 76 45 1 46 119 88 163 8.59e-11 61.6
MS.gene85207.t1 AT1G73300 35.165 91 57 1 46 134 213 303 9.21e-11 62.0
MS.gene85207.t1 AT1G73300 35.165 91 57 1 46 134 213 303 9.21e-11 62.0

Find 60 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTGCCTTTCAACCAATT+TGG 0.281351 2.4:+4236804 None:intergenic
CATCTCTCACATGTGCTCTA+AGG 0.281424 2.4:+4237452 None:intergenic
CATACCTTGGTCCAGCTATA+TGG 0.285880 2.4:+4238431 None:intergenic
GCTTTATGATTTAGCAGAAT+TGG 0.313472 2.4:+4236874 None:intergenic
AGATGATCACATCCTATATT+AGG 0.333021 2.4:-4237555 MS.gene85207:CDS
CCGTCTAGTTTCCGTGAGTT+AGG 0.343796 2.4:-4237529 MS.gene85207:CDS
TGGCAATTGATGATTTCTTC+AGG 0.362023 2.4:-4238512 MS.gene85207:CDS
GAAGTCACTTGAGGCCAAAT+TGG 0.376735 2.4:-4236818 MS.gene85207:CDS
TATCTCAGATGAATTGTTTG+AGG 0.408758 2.4:-4237913 MS.gene85207:intron
ATCTCTCACATGTGCTCTAA+GGG 0.416652 2.4:+4237453 None:intergenic
AGAGTCTAAATATATAATAC+TGG 0.418253 2.4:+4238022 None:intergenic
TGTTCCATTTGTACATGGGA+TGG 0.425923 2.4:-4237940 MS.gene85207:CDS
TATCACTTCATCACCAACTT+TGG 0.438207 2.4:+4236843 None:intergenic
ACTAGACGGTAACCTAATAT+AGG 0.445194 2.4:+4237543 None:intergenic
GCTCTTGTTCCATTTGTACA+TGG 0.446060 2.4:-4237945 MS.gene85207:CDS
GTTCCATTTGTACATGGGAT+GGG 0.456629 2.4:-4237939 MS.gene85207:CDS
TCTCCTGCTGGTTACATAGT+TGG 0.465774 2.4:-4238002 MS.gene85207:CDS
AGACCCATCCCATGTACAAA+TGG 0.478452 2.4:+4237936 None:intergenic
GATTGAGGTGCAGAGTTGGC+AGG 0.485652 2.4:+4238453 None:intergenic
GGTTGAACAATGAAGAAGTC+AGG 0.487179 2.4:-4237187 MS.gene85207:CDS
GCCTCTGTGCCGTGGTAGCA+TGG 0.493000 2.4:+4237583 None:intergenic
TTTGCTGCTTCAAAATTGAA+AGG 0.501124 2.4:+4238488 None:intergenic
TTTGAAGCAGCAAAGACAAA+GGG 0.512920 2.4:-4238479 MS.gene85207:CDS
TTGAGGCCAAATTGGTTGAA+AGG 0.513337 2.4:-4236810 MS.gene85207:CDS
TGCACCTCAATCCATATAGC+TGG 0.517012 2.4:-4238442 MS.gene85207:CDS
TTGATAAGTTGTGGCCAAGT+TGG 0.517392 2.4:+4237421 None:intergenic
AGGTTAACCGCGAGTGTGAT+GGG 0.518035 2.4:-4237778 MS.gene85207:CDS
AAAGAATGTTCGGTCGCACT+TGG 0.521654 2.4:-4237477 MS.gene85207:CDS
GCTGGTTACATAGTTGGAAA+TGG 0.524879 2.4:-4237996 MS.gene85207:CDS
GTTACAGATGAACAAATTGA+TGG 0.533753 2.4:-4237972 MS.gene85207:CDS
GAGGTTAACCGCGAGTGTGA+TGG 0.533915 2.4:-4237779 MS.gene85207:CDS
CCTGTGAGGAAAAGAATGTT+CGG 0.536839 2.4:-4237487 MS.gene85207:CDS
AAAGCATTAAAAGCCAAAGT+TGG 0.538383 2.4:-4236856 MS.gene85207:CDS
ATATATTTAGACTCTCCTGC+TGG 0.546816 2.4:-4238014 MS.gene85207:CDS
TATGGATTGAGGTGCAGAGT+TGG 0.550426 2.4:+4238449 None:intergenic
AAGAGATGGTAGACATTCAT+CGG 0.557042 2.4:-4236523 MS.gene85207:CDS
GAGATGGCAACGTACCAACT+TGG 0.557515 2.4:-4237435 MS.gene85207:CDS
CTCTTGTTCCATTTGTACAT+GGG 0.559485 2.4:-4237944 MS.gene85207:CDS
TTTCAGTCTCACCTAACTCA+CGG 0.568224 2.4:+4237518 None:intergenic
GTAAAGAAACATACTGTGCA+TGG 0.569087 2.4:+4237385 None:intergenic
TGGTCCAGCTATATGGATTG+AGG 0.571480 2.4:+4238438 None:intergenic
TTGGTTGAAAGGCAAAGTAA+AGG 0.579751 2.4:-4236799 MS.gene85207:intron
TCTTATCTGCCTCTGTGCCG+TGG 0.587236 2.4:+4237575 None:intergenic
CTTAGAGCACATGTGAGAGA+TGG 0.598645 2.4:-4237451 MS.gene85207:CDS
TTTCCAACTATGTAACCAGC+AGG 0.601514 2.4:+4237999 None:intergenic
CAATTCACACTGCAGAGGTG+AGG 0.611713 2.4:-4237160 MS.gene85207:intron
TTGTTGCTATTGATAAGTTG+TGG 0.616997 2.4:+4237412 None:intergenic
ATGGCTCTGTTGCAAATGCA+TGG 0.623040 2.4:-4237208 MS.gene85207:CDS
ACAAATTTAGAAACAAGAGA+TGG 0.638643 2.4:-4236537 MS.gene85207:intron
CCTAACTCACGGAAACTAGA+CGG 0.643978 2.4:+4237529 None:intergenic
AGAAATTCCCATCACACTCG+CGG 0.644090 2.4:+4237771 None:intergenic
ATTCTAGAACCATGCTACCA+CGG 0.649207 2.4:-4237592 MS.gene85207:CDS
GGAGTCTAGCTACCGCCTCG+AGG 0.654902 2.4:-4236502 MS.gene85207:CDS
GAAAGCAATTCACACTGCAG+AGG 0.668971 2.4:-4237165 MS.gene85207:CDS
TCTCTCACATGTGCTCTAAG+GGG 0.669928 2.4:+4237454 None:intergenic
AGTGATAGTGAAGTCACTTG+AGG 0.673659 2.4:-4236827 MS.gene85207:CDS
TGCTTCAATGATCCTCGAGG+CGG 0.695198 2.4:+4236490 None:intergenic
CAATCCATATAGCTGGACCA+AGG 0.709270 2.4:-4238435 MS.gene85207:intron
TGTTGCTTCAATGATCCTCG+AGG 0.725983 2.4:+4236487 None:intergenic
ACCATGCTACCACGGCACAG+AGG 0.736692 2.4:-4237584 MS.gene85207:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAATTAGCATTTCTA+AGG + chr2.4:4237742-4237761 None:intergenic 15.0%
!! ATATAAATCGTAAAATAACA+TGG + chr2.4:4238307-4238326 None:intergenic 15.0%
!! TTATAAGAAATAAGTGAATT+TGG - chr2.4:4237339-4237358 MS.gene85207:intron 15.0%
!!! TATTTCTATAACATAAGATA+AGG + chr2.4:4236816-4236835 None:intergenic 15.0%
!!! TATTTTTTCTTGTTATCAAA+TGG - chr2.4:4236934-4236953 MS.gene85207:intron 15.0%
!!! TTGATGATTCTTATTATTTT+AGG - chr2.4:4237368-4237387 MS.gene85207:intron 15.0%
!!! TTTTTAAAAAATTCATACCT+TGG + chr2.4:4236594-4236613 None:intergenic 15.0%
!! AGAGTCTAAATATATAATAC+TGG + chr2.4:4236990-4237009 None:intergenic 20.0%
!! TATAAAATACCAATCATGAT+GGG - chr2.4:4238000-4238019 MS.gene85207:CDS 20.0%
!! TTATACTAAATATACATCGA+AGG + chr2.4:4237985-4238004 None:intergenic 20.0%
!!! AAAATCAGTTGAATTTTGAA+AGG - chr2.4:4236610-4236629 MS.gene85207:intron 20.0%
!!! AAATCAGTTGAATTTTGAAA+GGG - chr2.4:4236611-4236630 MS.gene85207:intron 20.0%
!!! AATAGATTTTCTTTTAGACA+AGG + chr2.4:4238261-4238280 None:intergenic 20.0%
!!! TATTATTTTAGGACATTGAT+GGG - chr2.4:4237379-4237398 MS.gene85207:intron 20.0%
!!! TTATTATTTTAGGACATTGA+TGG - chr2.4:4237378-4237397 MS.gene85207:intron 20.0%
! AAATCAACTAGTAGCTAATA+AGG + chr2.4:4237686-4237705 None:intergenic 25.0%
! ACAAATTTAGAAACAAGAGA+TGG - chr2.4:4238472-4238491 MS.gene85207:CDS 25.0%
! GCTAATAAGGAGATATTAAA+TGG + chr2.4:4237673-4237692 None:intergenic 25.0%
! GTATAAAATACCAATCATGA+TGG - chr2.4:4237999-4238018 MS.gene85207:CDS 25.0%
! TTACAAGACAATATATAGCA+AGG + chr2.4:4237174-4237193 None:intergenic 25.0%
!! TGCTATATAGCATTTTTCTT+TGG - chr2.4:4238340-4238359 MS.gene85207:intron 25.0%
!! TTTTGACATTCAAAGTATAG+AGG + chr2.4:4237889-4237908 None:intergenic 25.0%
!!! TCTCTTGTTTCTAAATTTGT+TGG + chr2.4:4238472-4238491 None:intergenic 25.0%
ACACAATATTGAAACTGAAG+AGG + chr2.4:4238402-4238421 None:intergenic 30.0%
AGATGATCACATCCTATATT+AGG - chr2.4:4237454-4237473 MS.gene85207:CDS 30.0%
CACAATATTGAAACTGAAGA+GGG + chr2.4:4238401-4238420 None:intergenic 30.0%
CATAAACGTCTATCATGTAA+GGG + chr2.4:4236852-4236871 None:intergenic 30.0%
CATGACCTAACAATATCTTT+AGG - chr2.4:4237778-4237797 MS.gene85207:CDS 30.0%
GATGATTTCTTCTCATAGTT+TGG - chr2.4:4236637-4236656 MS.gene85207:intron 30.0%
GCTTTATGATTTAGCAGAAT+TGG + chr2.4:4238138-4238157 None:intergenic 30.0%
GTTACAGATGAACAAATTGA+TGG - chr2.4:4237037-4237056 MS.gene85207:intron 30.0%
TATCTCAGATGAATTGTTTG+AGG - chr2.4:4237096-4237115 MS.gene85207:intron 30.0%
TGAATTACACAACTCTTGTT+TGG + chr2.4:4236902-4236921 None:intergenic 30.0%
TGCACAATAACTATCTTTGA+AGG + chr2.4:4238081-4238100 None:intergenic 30.0%
! AAAGCATTAAAAGCCAAAGT+TGG - chr2.4:4238153-4238172 MS.gene85207:intron 30.0%
! ACCTAACAATATCTTTAGGA+TGG - chr2.4:4237782-4237801 MS.gene85207:CDS 30.0%
! TGATTCTGATTTTGCATTAC+AGG - chr2.4:4236961-4236980 MS.gene85207:intron 30.0%
! TTCCAAACTTGCTCTTAAAA+GGG + chr2.4:4237132-4237151 None:intergenic 30.0%
! TTGTTGCTATTGATAAGTTG+TGG + chr2.4:4237600-4237619 None:intergenic 30.0%
! TTTGCTGCTTCAAAATTGAA+AGG + chr2.4:4236524-4236543 None:intergenic 30.0%
!! CTTGTTTCTAAATTTGTTGG+CGG + chr2.4:4238469-4238488 None:intergenic 30.0%
!! TAGGTCATGTTACTTGTTTT+TGG + chr2.4:4237767-4237786 None:intergenic 30.0%
!! TTCTTCTCATAGTTTGGTTT+TGG - chr2.4:4236643-4236662 MS.gene85207:intron 30.0%
!!! TCTTCTCATAGTTTGGTTTT+GGG - chr2.4:4236644-4236663 MS.gene85207:intron 30.0%
AAGAGATGGTAGACATTCAT+CGG - chr2.4:4238486-4238505 MS.gene85207:CDS 35.0%
ACTAGACGGTAACCTAATAT+AGG + chr2.4:4237469-4237488 None:intergenic 35.0%
ACTTTGCCTTTCAACCAATT+TGG + chr2.4:4238208-4238227 None:intergenic 35.0%
ATATATTTAGACTCTCCTGC+TGG - chr2.4:4236995-4237014 MS.gene85207:intron 35.0%
CAAGCTTGCAAAAATTGATG+AGG - chr2.4:4237289-4237308 MS.gene85207:intron 35.0%
CTCTTGTTCCATTTGTACAT+GGG - chr2.4:4237065-4237084 MS.gene85207:intron 35.0%
GCATAAACGTCTATCATGTA+AGG + chr2.4:4236853-4236872 None:intergenic 35.0%
GCCATCCTAAAGATATTGTT+AGG + chr2.4:4237786-4237805 None:intergenic 35.0%
GTAAAGAAACATACTGTGCA+TGG + chr2.4:4237627-4237646 None:intergenic 35.0%
TATCACTTCATCACCAACTT+TGG + chr2.4:4238169-4238188 None:intergenic 35.0%
TCTGATGAAACAGAAAAGTG+TGG - chr2.4:4237926-4237945 MS.gene85207:CDS 35.0%
TTGAAAGGCAAAGTAAAGGT+AGG - chr2.4:4238214-4238233 MS.gene85207:intron 35.0%
TTGATTTATGCCCTTCCTAT+AGG - chr2.4:4238112-4238131 MS.gene85207:intron 35.0%
TTGGTTGAAAGGCAAAGTAA+AGG - chr2.4:4238210-4238229 MS.gene85207:intron 35.0%
! AAGGGCATAAATCAAACAAG+AGG + chr2.4:4238107-4238126 None:intergenic 35.0%
! ATTTAGCAGAATTGGCCTAT+AGG + chr2.4:4238130-4238149 None:intergenic 35.0%
! GTTCCAAACTTGCTCTTAAA+AGG + chr2.4:4237133-4237152 None:intergenic 35.0%
! TGGCAATTGATGATTTCTTC+AGG - chr2.4:4236497-4236516 MS.gene85207:CDS 35.0%
! TTTGAAGCAGCAAAGACAAA+GGG - chr2.4:4236530-4236549 MS.gene85207:CDS 35.0%
!! CAGTTGAATTTTGAAAGGGA+AGG - chr2.4:4236615-4236634 MS.gene85207:intron 35.0%
!! TACCCTTTTAAGAGCAAGTT+TGG - chr2.4:4237127-4237146 MS.gene85207:intron 35.0%
!! TTTTGGGTAGAGACTCTATA+GGG - chr2.4:4236660-4236679 MS.gene85207:intron 35.0%
!!! TTTTGAAGCAGCAAAGACAA+AGG - chr2.4:4236529-4236548 MS.gene85207:CDS 35.0%
ATCTCTCACATGTGCTCTAA+GGG + chr2.4:4237559-4237578 None:intergenic 40.0%
CCTGTGAGGAAAAGAATGTT+CGG - chr2.4:4237522-4237541 MS.gene85207:CDS 40.0%
GACATCATTCCCATCATGAT+TGG + chr2.4:4238012-4238031 None:intergenic 40.0%
GCTCTTGTTCCATTTGTACA+TGG - chr2.4:4237064-4237083 MS.gene85207:intron 40.0%
GCTGGTTACATAGTTGGAAA+TGG - chr2.4:4237013-4237032 MS.gene85207:intron 40.0%
GGTTGAACAATGAAGAAGTC+AGG - chr2.4:4237822-4237841 MS.gene85207:intron 40.0%
GTTCCATTTGTACATGGGAT+GGG - chr2.4:4237070-4237089 MS.gene85207:intron 40.0%
TGTTCCATTTGTACATGGGA+TGG - chr2.4:4237069-4237088 MS.gene85207:intron 40.0%
TTGAGGCCAAATTGGTTGAA+AGG - chr2.4:4238199-4238218 MS.gene85207:intron 40.0%
TTGATAAGTTGTGGCCAAGT+TGG + chr2.4:4237591-4237610 None:intergenic 40.0%
TTTCAGTCTCACCTAACTCA+CGG + chr2.4:4237494-4237513 None:intergenic 40.0%
TTTCCAACTATGTAACCAGC+AGG + chr2.4:4237013-4237032 None:intergenic 40.0%
! AGAAAAGTGTGGTCAGTAGT+TGG - chr2.4:4237937-4237956 MS.gene85207:CDS 40.0%
! AGTGATAGTGAAGTCACTTG+AGG - chr2.4:4238182-4238201 MS.gene85207:intron 40.0%
! ATTCTTTTCCTCACAGGATG+AGG + chr2.4:4237519-4237538 None:intergenic 40.0%
! GAAAAGTGTGGTCAGTAGTT+GGG - chr2.4:4237938-4237957 MS.gene85207:CDS 40.0%
!! ATTCTAGAACCATGCTACCA+CGG - chr2.4:4237417-4237436 MS.gene85207:CDS 40.0%
!! GTTTTGGGTAGAGACTCTAT+AGG - chr2.4:4236659-4236678 MS.gene85207:intron 40.0%
AAAGAATGTTCGGTCGCACT+TGG - chr2.4:4237532-4237551 MS.gene85207:CDS 45.0%
AAGCTCTCAAACAGTCTCAC+AGG + chr2.4:4236726-4236745 None:intergenic 45.0%
AGAAATTCCCATCACACTCG+CGG + chr2.4:4237241-4237260 None:intergenic 45.0%
AGACCCATCCCATGTACAAA+TGG + chr2.4:4237076-4237095 None:intergenic 45.0%
CAATCCATATAGCTGGACCA+AGG - chr2.4:4236574-4236593 MS.gene85207:intron 45.0%
CATACCTTGGTCCAGCTATA+TGG + chr2.4:4236581-4236600 None:intergenic 45.0%
CATCTCTCACATGTGCTCTA+AGG + chr2.4:4237560-4237579 None:intergenic 45.0%
CCTAACTCACGGAAACTAGA+CGG + chr2.4:4237483-4237502 None:intergenic 45.0%
CTGAAAAACCTCATCCTGTG+AGG - chr2.4:4237508-4237527 MS.gene85207:CDS 45.0%
CTTAGAGCACATGTGAGAGA+TGG - chr2.4:4237558-4237577 MS.gene85207:CDS 45.0%
GAAAGCAATTCACACTGCAG+AGG - chr2.4:4237844-4237863 MS.gene85207:intron 45.0%
GAAGTCACTTGAGGCCAAAT+TGG - chr2.4:4238191-4238210 MS.gene85207:intron 45.0%
TGCACCTCAATCCATATAGC+TGG - chr2.4:4236567-4236586 MS.gene85207:intron 45.0%
! AGCAGAATTGGCCTATAGGA+AGG + chr2.4:4238126-4238145 None:intergenic 45.0%
! ATGGCTCTGTTGCAAATGCA+TGG - chr2.4:4237801-4237820 MS.gene85207:intron 45.0%
! CCGAACATTCTTTTCCTCAC+AGG + chr2.4:4237525-4237544 None:intergenic 45.0%
! GCAGAATTGGCCTATAGGAA+GGG + chr2.4:4238125-4238144 None:intergenic 45.0%
! TATGGATTGAGGTGCAGAGT+TGG + chr2.4:4236563-4236582 None:intergenic 45.0%
! TCTCCTGCTGGTTACATAGT+TGG - chr2.4:4237007-4237026 MS.gene85207:intron 45.0%
! TCTCTCACATGTGCTCTAAG+GGG + chr2.4:4237558-4237577 None:intergenic 45.0%
! TGGTCCAGCTATATGGATTG+AGG + chr2.4:4236574-4236593 None:intergenic 45.0%
AGGTTAACCGCGAGTGTGAT+GGG - chr2.4:4237231-4237250 MS.gene85207:intron 50.0%
ATGTTGCACTCTGTTGCAGG+AGG - chr2.4:4237211-4237230 MS.gene85207:CDS 50.0%
CAATTCACACTGCAGAGGTG+AGG - chr2.4:4237849-4237868 MS.gene85207:intron 50.0%
GAGATGGCAACGTACCAACT+TGG - chr2.4:4237574-4237593 MS.gene85207:CDS 50.0%
GTCATGTTGCACTCTGTTGC+AGG - chr2.4:4237208-4237227 MS.gene85207:CDS 50.0%
! CCGTCTAGTTTCCGTGAGTT+AGG - chr2.4:4237480-4237499 MS.gene85207:CDS 50.0%
GAGGTTAACCGCGAGTGTGA+TGG - chr2.4:4237230-4237249 MS.gene85207:intron 55.0%
GATTGAGGTGCAGAGTTGGC+AGG + chr2.4:4236559-4236578 None:intergenic 55.0%
TCTTATCTGCCTCTGTGCCG+TGG + chr2.4:4237437-4237456 None:intergenic 55.0%
ACCATGCTACCACGGCACAG+AGG - chr2.4:4237425-4237444 MS.gene85207:CDS 60.0%
GCCTCTGTGCCGTGGTAGCA+TGG + chr2.4:4237429-4237448 None:intergenic 65.0%
GGAGTCTAGCTACCGCCTCG+AGG - chr2.4:4238507-4238526 MS.gene85207:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 4236494 4238537 4236494 ID=MS.gene85207
chr2.4 mRNA 4236494 4238537 4236494 ID=MS.gene85207.t1;Parent=MS.gene85207
chr2.4 exon 4238436 4238537 4238436 ID=MS.gene85207.t1.exon1;Parent=MS.gene85207.t1
chr2.4 CDS 4238436 4238537 4238436 ID=cds.MS.gene85207.t1;Parent=MS.gene85207.t1
chr2.4 exon 4237914 4238048 4237914 ID=MS.gene85207.t1.exon2;Parent=MS.gene85207.t1
chr2.4 CDS 4237914 4238048 4237914 ID=cds.MS.gene85207.t1;Parent=MS.gene85207.t1
chr2.4 exon 4237721 4237801 4237721 ID=MS.gene85207.t1.exon3;Parent=MS.gene85207.t1
chr2.4 CDS 4237721 4237801 4237721 ID=cds.MS.gene85207.t1;Parent=MS.gene85207.t1
chr2.4 exon 4237399 4237641 4237399 ID=MS.gene85207.t1.exon4;Parent=MS.gene85207.t1
chr2.4 CDS 4237399 4237641 4237399 ID=cds.MS.gene85207.t1;Parent=MS.gene85207.t1
chr2.4 exon 4237161 4237231 4237161 ID=MS.gene85207.t1.exon5;Parent=MS.gene85207.t1
chr2.4 CDS 4237161 4237231 4237161 ID=cds.MS.gene85207.t1;Parent=MS.gene85207.t1
chr2.4 exon 4236800 4236897 4236800 ID=MS.gene85207.t1.exon6;Parent=MS.gene85207.t1
chr2.4 CDS 4236800 4236897 4236800 ID=cds.MS.gene85207.t1;Parent=MS.gene85207.t1
chr2.4 exon 4236494 4236549 4236494 ID=MS.gene85207.t1.exon7;Parent=MS.gene85207.t1
chr2.4 CDS 4236494 4236549 4236494 ID=cds.MS.gene85207.t1;Parent=MS.gene85207.t1
Gene Sequence

>MS.gene85207

ATGTGGCAATTGATGATTTCTTCAGGTCCTTTCAATTTTGAAGCAGCAAAGACAAAGGGAAGCCTGCCAACTCTGCACCTCAATCCATATAGCTGGACCAAGGTATGAATTTTTTAAAAATCAGTTGAATTTTGAAAGGGAAGGATGATTTCTTCTCATAGTTTGGTTTTGGGTAGAGACTCTATAGGGTTGTTTGTATTGACTTATTTAAATTTATGTATAATAAGCACCTGTGAGACTGTTTGAGAGCTTTTGAAAAGAATGAGCTCTTCATGATAGCTTATGAATGCAGCTTGTAACTTATATGTAAACTGTTTGACCTTATCTTATGTTATAGAAATAACTTATATGTAAGCCCTTACATGATAGACGTTTATGCTATAAGTAAGTAGTTAAGTTGTTTATCCAAACAAGAGTTGTGTAATTCAACAATCACTAGTTATTTTTTCTTGTTATCAAATGGTATATGATTCTGATTTTGCATTACAGGTTTCCAGTATTATATATTTAGACTCTCCTGCTGGTTACATAGTTGGAAATGGTGTTACAGATGAACAAATTGATGGCAATGCTCTTGTTCCATTTGTACATGGGATGGGTCTTATCTCAGATGAATTGTTTGAGGTGAAAATATACCCTTTTAAGAGCAAGTTTGGAACTATATCTATTGTTTGAAACCTTGCTATATATTGTCTTGTAAGTATGTTTCTTTAAGTCATGTTGCACTCTGTTGCAGGAGGTTAACCGCGAGTGTGATGGGAATTTCTATAATTCACTCAGTGATAATTGTACAAACAAGCTTGCAAAAATTGATGAGGTGATTTAATTATACTACAGTACTGAGATTATAAGAAATAAGTGAATTTGGCACTCATTGATGATTCTTATTATTTTAGGACATTGATGGGTTGAATGTATATAACATTCTAGAACCATGCTACCACGGCACAGAGGCAGATAAGATGATCACATCCTATATTAGGTTACCGTCTAGTTTCCGTGAGTTAGGTGAGACTGAAAAACCTCATCCTGTGAGGAAAAGAATGTTCGGTCGCACTTGGCCCCTTAGAGCACATGTGAGAGATGGCAACGTACCAACTTGGCCACAACTTATCAATAGCAACAATGTTCCATGCACAGTATGTTTCTTTACTACTATCTAAGTGTCTATATTTACCATTTAATATCTCCTTATTAGCTACTAGTTGATTTAATTGCTCGATTATCATTGCATACTTGTTTAAACCTTAGAAATGCTAATTTTTTATTTCCAAAAACAAGTAACATGACCTAACAATATCTTTAGGATGGCTCTGTTGCAAATGCATGGTTGAACAATGAAGAAGTCAGGAAAGCAATTCACACTGCAGAGGTGAGGTTTCTTGTAAGATACCTCTATACTTTGAATGTCAAAACACTAAATTATTATCTCTCTGATGAAACAGAAAAGTGTGGTCAGTAGTTGGGATTTATGTACAGACAAAATTTCCTTCGATGTATATTTAGTATAAAATACCAATCATGATGGGAATGATGTCTTAGAGAGATATGAGATGTTTGACTATGATTTGTGTGCTTTTTCTTCCTTCAAAGATAGTTATTGTGCAAAACCTCTTGTTTGATTTATGCCCTTCCTATAGGCCAATTCTGCTAAATCATAAAGCATTAAAAGCCAAAGTTGGTGATGAAGTGATAGTGAAGTCACTTGAGGCCAAATTGGTTGAAAGGCAAAGTAAAGGTAGGTTCTTGTGCAATATTGTTATACCTTGTCTAAAAGAAAATCTATTTTCTGACTGAAGTAGAACACATGCCATGTTATTTTACGATTTATATGAAAAATCTTCAATGCTATATAGCATTTTTCTTTGGACATGTATATTAGATTGTATATGTATGTTTGTTTTCCCTCTTCAGTTTCAATATTGTGTTTCAATTTACTAATCATTGTCTTATTTATTTTTCTTCTTCTTTTCCGCCAACAAATTTAGAAACAAGAGATGGTAGACATTCATCGGAGTCTAGCTACCGCCTCGAGGATCATTGA
Protein sequence

>MS.gene85207.t1

MWQLMISSGPFNFEAAKTKGSLPTLHLNPYSWTKVSSIIYLDSPAGYIVGNGVTDEQIDGNALVPFVHGMGLISDELFEEVNRECDGNFYNSLSDNCTNKLAKIDEDIDGLNVYNILEPCYHGTEADKMITSYIRLPSSFRELGETEKPHPVRKRMFGRTWPLRAHVRDGNVPTWPQLINSNNVPCTDGSVANAWLNNEEVRKAIHTAEVRPILLNHKALKAKVGDEVIVKSLEAKLVERQSKETRDGRHSSESSYRLEDH