AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85244

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85244.t1 MTR_2g099520 88.912 487 29 2 1 464 1 485 0.0 801
MS.gene85244.t1 MTR_8g018800 49.215 191 70 9 1 180 1 175 9.30e-35 137
MS.gene85244.t1 MTR_8g018800 41.367 278 126 10 205 455 409 676 9.43e-29 120
MS.gene85244.t1 MTR_2g040580 30.303 198 85 9 44 203 28 210 2.07e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85244.t1 AT1G72790 33.725 255 145 8 2 235 3 254 1.33e-30 125
MS.gene85244.t1 AT1G72790 54.054 111 43 3 345 455 438 540 3.93e-14 75.1
MS.gene85244.t1 AT5G57070 31.188 202 108 8 11 183 8 207 1.48e-16 82.8

Find 93 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGGTGCTGTTTCTGTTTC+TGG 0.001891 2.4:-4724255 None:intergenic
TGTCTATGCTTCTTCTTCTT+TGG 0.180600 2.4:-4724705 None:intergenic
CTGTTTCTGTTTCTGGTTCC+AGG 0.200259 2.4:-4724248 None:intergenic
GGAGGTGGAGGAGGAGGCGG+TGG 0.218746 2.4:-4724957 None:intergenic
TCAACACCTGGGTTGGGATT+TGG 0.247850 2.4:-4725131 None:intergenic
GCTAAGGAAGCCACAGAATA+TGG 0.251634 2.4:-4724133 None:intergenic
AAGAAATTTCTTCACCCTTC+TGG 0.252101 2.4:+4723899 MS.gene85244:CDS
GGTGGAGGAGGAGGCGGTGG+AGG 0.284560 2.4:-4724954 None:intergenic
AAAGTTTCAGAGCTGGTTTA+AGG 0.293090 2.4:+4725177 MS.gene85244:CDS
TCCAGGTTCTTCACCACTAA+TGG 0.301864 2.4:-4725090 None:intergenic
TCTGTTTCTGGTTCCAGGTT+TGG 0.325114 2.4:-4724243 None:intergenic
CTGAATTAGGTTTGAAAATG+TGG 0.336482 2.4:-4724065 None:intergenic
TCTTTGAGGAAGCAGGAGAT+AGG 0.337828 2.4:+4725215 MS.gene85244:CDS
TGCAGAGAGAAAGAATAAAA+AGG 0.369966 2.4:+4724578 MS.gene85244:CDS
ATAGAACAAGCAAAAGGTTA+AGG 0.377143 2.4:-4724107 None:intergenic
AAAGACTCTTGCCGGAGATC+CGG 0.382262 2.4:-4724342 None:intergenic
CTATGCTTCTTCTTCTTTGG+AGG 0.383439 2.4:-4724702 None:intergenic
CGACCCACAAAGACTCTTGC+CGG 0.400834 2.4:-4724350 None:intergenic
ATTCAATGGCGACTCATTAC+CGG 0.407693 2.4:-4724925 None:intergenic
TTGTTATCAACACCTGGGTT+GGG 0.412780 2.4:-4725137 None:intergenic
CCAGCTTTGTTATCAACACC+TGG 0.434293 2.4:-4725143 None:intergenic
ATCTCCGGCAAGAGTCTTTG+TGG 0.434333 2.4:+4724346 MS.gene85244:CDS
TCGTGTGCTTGTGTCTGAAA+AGG 0.437376 2.4:-4724205 None:intergenic
GGCATGGAAGTTCAAGGTGC+AGG 0.438005 2.4:+4724992 MS.gene85244:CDS
ATAGGGAGGTCTAATCTCTA+TGG 0.440443 2.4:+4725233 MS.gene85244:CDS
TAGAACAAGCAAAAGGTTAA+GGG 0.449988 2.4:-4724106 None:intergenic
AATGAATTCTTTGAGGAAGC+AGG 0.456178 2.4:+4725208 MS.gene85244:CDS
GCGGCTGAGGCGGCGGCGGT+TGG 0.464988 2.4:-4723938 None:intergenic
TGTTAACCGTTACCATGGAT+TGG 0.470907 2.4:+4724410 MS.gene85244:CDS
TGGAGAAAATGAATTCTTTG+AGG 0.471002 2.4:+4725201 MS.gene85244:CDS
ATGCAAGTGCAATTACTAGA+AGG 0.473585 2.4:-4724002 None:intergenic
TAGCATTAGTAGTTCAAGTT+CGG 0.474176 2.4:+4725034 MS.gene85244:CDS
TTGAAAGGAGGTGGAGGAGG+AGG 0.481533 2.4:-4724963 None:intergenic
ATCTTGAAAGGAGGTGGAGG+AGG 0.481765 2.4:-4724966 None:intergenic
TTCATTGAAAGTTTCAGAGC+TGG 0.482129 2.4:+4725170 MS.gene85244:CDS
AAGACTCTTGCCGGAGATCC+GGG 0.482836 2.4:-4724341 None:intergenic
TTAACTCCTACCCGGATCTC+CGG 0.485664 2.4:+4724331 MS.gene85244:CDS
TGAATTAGGTTTGAAAATGT+GGG 0.491533 2.4:-4724064 None:intergenic
GTTCTATTTGCCATATTCTG+TGG 0.492687 2.4:+4724123 MS.gene85244:CDS
AAAGGAGGTGGAGGAGGAGG+CGG 0.496317 2.4:-4724960 None:intergenic
CTTTGAGGAAGCAGGAGATA+GGG 0.497665 2.4:+4725216 MS.gene85244:CDS
TACACCAGTAGATCAATTCC+AGG 0.504782 2.4:-4725107 None:intergenic
ATGAGCGGCTGAGGCGGCGG+CGG 0.506657 2.4:-4723942 None:intergenic
AAATCGCCACCGTTCATCTC+CGG 0.510844 2.4:-4724373 None:intergenic
GCCGGCATCTTGAAAGGAGG+TGG 0.511485 2.4:-4724972 None:intergenic
GAATAGAACAAATCATGAAA+AGG 0.514757 2.4:-4724798 None:intergenic
TTTCAGAGCTGGTTTAAGGA+TGG 0.515914 2.4:+4725181 MS.gene85244:CDS
TTTGTTATCAACACCTGGGT+TGG 0.516139 2.4:-4725138 None:intergenic
GAAGAAGGCATAGTAGTAGC+AGG 0.520460 2.4:-4724768 None:intergenic
AGATATAGATGAAGAAGTAG+TGG 0.520807 2.4:+4725058 MS.gene85244:CDS
TTCCATGCCGGCATCTTGAA+AGG 0.523894 2.4:-4724978 None:intergenic
AGTATGAGCGGCTGAGGCGG+CGG 0.526310 2.4:-4723945 None:intergenic
CAAGAGTCTTTGTGGGTCGC+CGG 0.528563 2.4:+4724354 MS.gene85244:CDS
TCCACCTCCTTTCAAGATGC+CGG 0.530583 2.4:+4724971 MS.gene85244:CDS
GAACTACATATAACAAATTG+AGG 0.536282 2.4:+4724304 MS.gene85244:CDS
TCAAATTTAAGTCCAATCCA+TGG 0.540726 2.4:-4724422 None:intergenic
CTCCTTTCAAGATGCCGGCA+TGG 0.541718 2.4:+4724976 MS.gene85244:CDS
AGAACCTGGAATTGATCTAC+TGG 0.543187 2.4:+4725103 MS.gene85244:CDS
ACCATTAGTGGTGAAGAACC+TGG 0.545365 2.4:+4725089 MS.gene85244:CDS
GTGGAGTTACCAACCATTAG+TGG 0.546404 2.4:+4725077 MS.gene85244:CDS
AAAGTGAGTATGAGCGGCTG+AGG 0.547046 2.4:-4723951 None:intergenic
GAAGTGAACACATCTTTGAA+AGG 0.549837 2.4:+4724483 MS.gene85244:CDS
TCTCCGGCAAGAGTCTTTGT+GGG 0.550855 2.4:+4724347 MS.gene85244:CDS
TGGCAAATAGAACAAGCAAA+AGG 0.553715 2.4:-4724113 None:intergenic
CCAAAACCAAATGGAAGGAG+AGG 0.555034 2.4:+4723876 None:intergenic
GATGCCGGCATGGAAGTTCA+AGG 0.559464 2.4:+4724986 MS.gene85244:CDS
GGAAAGAACAAGAAGAAGCA+AGG 0.563591 2.4:+4724504 MS.gene85244:CDS
TGAAAAGGAGAAGAAGAAGA+AGG 0.566027 2.4:-4724783 None:intergenic
GTGAGTATGAGCGGCTGAGG+CGG 0.568620 2.4:-4723948 None:intergenic
TGTGGGTCGCCGGAGATGAA+CGG 0.569230 2.4:+4724364 MS.gene85244:CDS
GCATGGAAGTTCAAGGTGCA+GGG 0.571171 2.4:+4724993 MS.gene85244:CDS
CCAGGTGTTGATAACAAAGC+TGG 0.571763 2.4:+4725143 MS.gene85244:CDS
TTAAGTCCAATCCATGGTAA+CGG 0.572656 2.4:-4724416 None:intergenic
GAAGTGAAAGAGTGCAATGT+AGG 0.576308 2.4:-4724042 None:intergenic
AAAATGCAACAATCTTTGAA+AGG 0.577936 2.4:+4724621 MS.gene85244:CDS
GGTGGAGGTATTGAATTCAA+TGG 0.583318 2.4:-4724939 None:intergenic
AGAGTATGAGAAACCAAACC+TGG 0.583436 2.4:+4724230 MS.gene85244:CDS
AGAAGAAGAAGAAAGCATCA+AGG 0.584854 2.4:+4724455 MS.gene85244:CDS
GGCATCTTGAAAGGAGGTGG+AGG 0.585264 2.4:-4724969 None:intergenic
TGCACCTTGAACTTCCATGC+CGG 0.585341 2.4:-4724990 None:intergenic
ACACATGTTAACCGTTACCA+TGG 0.592063 2.4:+4724405 MS.gene85244:CDS
GGTTCTTCACCACTAATGGT+TGG 0.603566 2.4:-4725086 None:intergenic
TCAAACCAAAACCAAATGGA+AGG 0.610532 2.4:+4723871 None:intergenic
CAGCTTTGTTATCAACACCT+GGG 0.618684 2.4:-4725142 None:intergenic
TGAGGAAGCAGGAGATAGGG+AGG 0.629953 2.4:+4725219 MS.gene85244:CDS
CCCTTCTGGCTGCAAAACAG+CGG 0.638122 2.4:+4723913 MS.gene85244:CDS
TGATAACAGTGCCAGAGCTG+AGG 0.639850 2.4:-4723975 None:intergenic
TGAGGAAAAGTGAGTATGAG+CGG 0.649948 2.4:-4723957 None:intergenic
CATGCCGGCATCTTGAAAGG+AGG 0.658363 2.4:-4724975 None:intergenic
GTGTATCCAAATCCCAACCC+AGG 0.669447 2.4:+4725125 MS.gene85244:CDS
CTCTTGCCGGAGATCCGGGT+AGG 0.674118 2.4:-4724337 None:intergenic
GCTGAAACTTGATGTTGTGA+CGG 0.683300 2.4:-4724858 None:intergenic
GGGTCGCCGGAGATGAACGG+TGG 0.698178 2.4:+4724367 MS.gene85244:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTCAGTAAAAAAGAGTT+GGG + chr2.4:4724080-4724099 MS.gene85244:CDS 20.0%
!! TATGATTATGTCAAAAACAA+AGG + chr2.4:4724881-4724900 MS.gene85244:CDS 20.0%
! AAAATGCAACAATCTTTGAA+AGG + chr2.4:4724621-4724640 MS.gene85244:CDS 25.0%
! CTAATTCAGTAAAAAAGAGT+TGG + chr2.4:4724079-4724098 MS.gene85244:CDS 25.0%
! GAACTACATATAACAAATTG+AGG + chr2.4:4724304-4724323 MS.gene85244:CDS 25.0%
! GAATAGAACAAATCATGAAA+AGG - chr2.4:4724801-4724820 None:intergenic 25.0%
! TAAAAAGGTAATTGTAACGA+AGG + chr2.4:4724593-4724612 MS.gene85244:CDS 25.0%
! TGAATTAGGTTTGAAAATGT+GGG - chr2.4:4724067-4724086 None:intergenic 25.0%
!!! CAACTCTTTTTTACTGAATT+AGG - chr2.4:4724081-4724100 None:intergenic 25.0%
AGATATAGATGAAGAAGTAG+TGG + chr2.4:4725058-4725077 MS.gene85244:CDS 30.0%
ATAGAACAAGCAAAAGGTTA+AGG - chr2.4:4724110-4724129 None:intergenic 30.0%
CTGAATTAGGTTTGAAAATG+TGG - chr2.4:4724068-4724087 None:intergenic 30.0%
TAGAACAAGCAAAAGGTTAA+GGG - chr2.4:4724109-4724128 None:intergenic 30.0%
TCAAATTTAAGTCCAATCCA+TGG - chr2.4:4724425-4724444 None:intergenic 30.0%
TGCAGAGAGAAAGAATAAAA+AGG + chr2.4:4724578-4724597 MS.gene85244:CDS 30.0%
TGGAGAAAATGAATTCTTTG+AGG + chr2.4:4725201-4725220 MS.gene85244:CDS 30.0%
! GATGATTTTTCTGTGATTAC+CGG + chr2.4:4724906-4724925 MS.gene85244:CDS 30.0%
! TAGCATTAGTAGTTCAAGTT+CGG + chr2.4:4725034-4725053 MS.gene85244:CDS 30.0%
!! GGTTTGATTTTGATCTTCAT+AGG - chr2.4:4724187-4724206 None:intergenic 30.0%
!!! CATTGTTGTTGTTTTTGCTA+AGG - chr2.4:4724152-4724171 None:intergenic 30.0%
!!! TTAATGGTTTTGGTGATGAA+GGG - chr2.4:4725261-4725280 None:intergenic 30.0%
AAGAAATTTCTTCACCCTTC+TGG + chr2.4:4723899-4723918 MS.gene85244:CDS 35.0%
ATGCAAGTGCAATTACTAGA+AGG - chr2.4:4724005-4724024 None:intergenic 35.0%
GAAGTGAACACATCTTTGAA+AGG + chr2.4:4724483-4724502 MS.gene85244:CDS 35.0%
GTTCTATTTGCCATATTCTG+TGG + chr2.4:4724123-4724142 MS.gene85244:CDS 35.0%
TGAAAAGGAGAAGAAGAAGA+AGG - chr2.4:4724786-4724805 None:intergenic 35.0%
TGGCAAATAGAACAAGCAAA+AGG - chr2.4:4724116-4724135 None:intergenic 35.0%
TGTCTATGCTTCTTCTTCTT+TGG - chr2.4:4724708-4724727 None:intergenic 35.0%
TTAAGTCCAATCCATGGTAA+CGG - chr2.4:4724419-4724438 None:intergenic 35.0%
TTCATTGAAAGTTTCAGAGC+TGG + chr2.4:4725170-4725189 MS.gene85244:CDS 35.0%
! AAAGTTTCAGAGCTGGTTTA+AGG + chr2.4:4725177-4725196 MS.gene85244:CDS 35.0%
! AATGAATTCTTTGAGGAAGC+AGG + chr2.4:4725208-4725227 MS.gene85244:CDS 35.0%
! TTTTGATCTTCATAGGAACG+TGG - chr2.4:4724180-4724199 None:intergenic 35.0%
!! AGAAGAAGAAGAAAGCATCA+AGG + chr2.4:4724455-4724474 MS.gene85244:CDS 35.0%
ACACATGTTAACCGTTACCA+TGG + chr2.4:4724405-4724424 MS.gene85244:CDS 40.0%
AGAACCTGGAATTGATCTAC+TGG + chr2.4:4725103-4725122 MS.gene85244:CDS 40.0%
AGAGTATGAGAAACCAAACC+TGG + chr2.4:4724230-4724249 MS.gene85244:CDS 40.0%
ATAGGGAGGTCTAATCTCTA+TGG + chr2.4:4725233-4725252 MS.gene85244:CDS 40.0%
ATTCAATGGCGACTCATTAC+CGG - chr2.4:4724928-4724947 None:intergenic 40.0%
CTATGCTTCTTCTTCTTTGG+AGG - chr2.4:4724705-4724724 None:intergenic 40.0%
GAGTACTCATACCAAAAACG+TGG - chr2.4:4724276-4724295 None:intergenic 40.0%
GCTGAAACTTGATGTTGTGA+CGG - chr2.4:4724861-4724880 None:intergenic 40.0%
GGAAAGAACAAGAAGAAGCA+AGG + chr2.4:4724504-4724523 MS.gene85244:CDS 40.0%
TACACCAGTAGATCAATTCC+AGG - chr2.4:4725110-4725129 None:intergenic 40.0%
TGAGGAAAAGTGAGTATGAG+CGG - chr2.4:4723960-4723979 None:intergenic 40.0%
TGTTAACCGTTACCATGGAT+TGG + chr2.4:4724410-4724429 MS.gene85244:CDS 40.0%
TTGTTATCAACACCTGGGTT+GGG - chr2.4:4725140-4725159 None:intergenic 40.0%
! GAAGTGAAAGAGTGCAATGT+AGG - chr2.4:4724045-4724064 None:intergenic 40.0%
! TTTCAGAGCTGGTTTAAGGA+TGG + chr2.4:4725181-4725200 MS.gene85244:CDS 40.0%
! TTTGTTATCAACACCTGGGT+TGG - chr2.4:4725141-4725160 None:intergenic 40.0%
!! CAGCTTTGTTATCAACACCT+GGG - chr2.4:4725145-4725164 None:intergenic 40.0%
!! GGTGGAGGTATTGAATTCAA+TGG - chr2.4:4724942-4724961 None:intergenic 40.0%
ACCATTAGTGGTGAAGAACC+TGG + chr2.4:4725089-4725108 MS.gene85244:CDS 45.0%
GCTAAGGAAGCCACAGAATA+TGG - chr2.4:4724136-4724155 None:intergenic 45.0%
GGTTCTTCACCACTAATGGT+TGG - chr2.4:4725089-4725108 None:intergenic 45.0%
GTGGAGTTACCAACCATTAG+TGG + chr2.4:4725077-4725096 MS.gene85244:CDS 45.0%
TCCAGGTTCTTCACCACTAA+TGG - chr2.4:4725093-4725112 None:intergenic 45.0%
TCGTGTGCTTGTGTCTGAAA+AGG - chr2.4:4724208-4724227 None:intergenic 45.0%
! CAGAAACAGCACCACGTTTT+TGG + chr2.4:4724262-4724281 MS.gene85244:CDS 45.0%
! CTTTGAGGAAGCAGGAGATA+GGG + chr2.4:4725216-4725235 MS.gene85244:CDS 45.0%
! GAAGAAGGCATAGTAGTAGC+AGG - chr2.4:4724771-4724790 None:intergenic 45.0%
! TCTTTGAGGAAGCAGGAGAT+AGG + chr2.4:4725215-4725234 MS.gene85244:CDS 45.0%
!! CCAGCTTTGTTATCAACACC+TGG - chr2.4:4725146-4725165 None:intergenic 45.0%
!! CCAGGTGTTGATAACAAAGC+TGG + chr2.4:4725143-4725162 MS.gene85244:CDS 45.0%
!! CTGTTTCTGTTTCTGGTTCC+AGG - chr2.4:4724251-4724270 None:intergenic 45.0%
!! TACTCACTTTTCCTCAGCTC+TGG + chr2.4:4723964-4723983 MS.gene85244:CDS 45.0%
!! TCTGTTTCTGGTTCCAGGTT+TGG - chr2.4:4724246-4724265 None:intergenic 45.0%
!!! GAGGAGTTTTAACTCCTACC+CGG + chr2.4:4724323-4724342 MS.gene85244:CDS 45.0%
AAAGACTCTTGCCGGAGATC+CGG - chr2.4:4724345-4724364 None:intergenic 50.0%
AAAGTGAGTATGAGCGGCTG+AGG - chr2.4:4723954-4723973 None:intergenic 50.0%
AAATCGCCACCGTTCATCTC+CGG - chr2.4:4724376-4724395 None:intergenic 50.0%
ATCTCCGGCAAGAGTCTTTG+TGG + chr2.4:4724346-4724365 MS.gene85244:CDS 50.0%
ATCTTGAAAGGAGGTGGAGG+AGG - chr2.4:4724969-4724988 None:intergenic 50.0%
GCATGGAAGTTCAAGGTGCA+GGG + chr2.4:4724993-4725012 MS.gene85244:CDS 50.0%
GTGTATCCAAATCCCAACCC+AGG + chr2.4:4725125-4725144 MS.gene85244:CDS 50.0%
TCCACCTCCTTTCAAGATGC+CGG + chr2.4:4724971-4724990 MS.gene85244:CDS 50.0%
TCTCCGGCAAGAGTCTTTGT+GGG + chr2.4:4724347-4724366 MS.gene85244:CDS 50.0%
TGATAACAGTGCCAGAGCTG+AGG - chr2.4:4723978-4723997 None:intergenic 50.0%
TGCACCTTGAACTTCCATGC+CGG - chr2.4:4724993-4725012 None:intergenic 50.0%
TTAACTCCTACCCGGATCTC+CGG + chr2.4:4724331-4724350 MS.gene85244:CDS 50.0%
TTCCATGCCGGCATCTTGAA+AGG - chr2.4:4724981-4725000 None:intergenic 50.0%
! TCAACACCTGGGTTGGGATT+TGG - chr2.4:4725134-4725153 None:intergenic 50.0%
!! CGTGGTGCTGTTTCTGTTTC+TGG - chr2.4:4724258-4724277 None:intergenic 50.0%
AAGACTCTTGCCGGAGATCC+GGG - chr2.4:4724344-4724363 None:intergenic 55.0%
CAAGAGTCTTTGTGGGTCGC+CGG + chr2.4:4724354-4724373 MS.gene85244:CDS 55.0%
CATGCCGGCATCTTGAAAGG+AGG - chr2.4:4724978-4724997 None:intergenic 55.0%
CGACCCACAAAGACTCTTGC+CGG - chr2.4:4724353-4724372 None:intergenic 55.0%
CTCCTTTCAAGATGCCGGCA+TGG + chr2.4:4724976-4724995 MS.gene85244:CDS 55.0%
GATGCCGGCATGGAAGTTCA+AGG + chr2.4:4724986-4725005 MS.gene85244:CDS 55.0%
GGCATCTTGAAAGGAGGTGG+AGG - chr2.4:4724972-4724991 None:intergenic 55.0%
GGCATGGAAGTTCAAGGTGC+AGG + chr2.4:4724992-4725011 MS.gene85244:CDS 55.0%
TGAGGAAGCAGGAGATAGGG+AGG + chr2.4:4725219-4725238 MS.gene85244:CDS 55.0%
TTGAAAGGAGGTGGAGGAGG+AGG - chr2.4:4724966-4724985 None:intergenic 55.0%
! CCCTTCTGGCTGCAAAACAG+CGG + chr2.4:4723913-4723932 MS.gene85244:CDS 55.0%
!! CCGCTGTTTTGCAGCCAGAA+GGG - chr2.4:4723916-4723935 None:intergenic 55.0%
AAAGGAGGTGGAGGAGGAGG+CGG - chr2.4:4724963-4724982 None:intergenic 60.0%
GCCGGCATCTTGAAAGGAGG+TGG - chr2.4:4724975-4724994 None:intergenic 60.0%
GTGAGTATGAGCGGCTGAGG+CGG - chr2.4:4723951-4723970 None:intergenic 60.0%
TGTGGGTCGCCGGAGATGAA+CGG + chr2.4:4724364-4724383 MS.gene85244:CDS 60.0%
!! GCCGCTGTTTTGCAGCCAGA+AGG - chr2.4:4723917-4723936 None:intergenic 60.0%
AGTATGAGCGGCTGAGGCGG+CGG - chr2.4:4723948-4723967 None:intergenic 65.0%
CTCTTGCCGGAGATCCGGGT+AGG - chr2.4:4724340-4724359 None:intergenic 65.0%
GGGTCGCCGGAGATGAACGG+TGG + chr2.4:4724367-4724386 MS.gene85244:CDS 70.0%
ATGAGCGGCTGAGGCGGCGG+CGG - chr2.4:4723945-4723964 None:intergenic 75.0%
GGAGGTGGAGGAGGAGGCGG+TGG - chr2.4:4724960-4724979 None:intergenic 75.0%
GGTGGAGGAGGAGGCGGTGG+AGG - chr2.4:4724957-4724976 None:intergenic 75.0%
! GCGGCTGAGGCGGCGGCGGT+TGG - chr2.4:4723941-4723960 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 4723886 4725280 4723886 ID=MS.gene85244
chr2.4 mRNA 4723886 4725280 4723886 ID=MS.gene85244.t1;Parent=MS.gene85244
chr2.4 exon 4723886 4725280 4723886 ID=MS.gene85244.t1.exon1;Parent=MS.gene85244.t1
chr2.4 CDS 4723886 4725280 4723886 ID=cds.MS.gene85244.t1;Parent=MS.gene85244.t1
Gene Sequence

>MS.gene85244

ATGGAAGGAGAGGAAGAAATTTCTTCACCCTTCTGGCTGCAAAACAGCGGCGCCAACCGCCGCCGCCTCAGCCGCTCATACTCACTTTTCCTCAGCTCTGGCACTGTTATCATAGTCCTTCTAGTAATTGCACTTGCATTCATCTTAGTCATAGTTCCTACATTGCACTCTTTCACTTCCCACATTTTCAAACCTAATTCAGTAAAAAAGAGTTGGGATTCCCTTAACCTTTTGCTTGTTCTATTTGCCATATTCTGTGGCTTCCTTAGCAAAAACAACAACAATGAAAGTCCACGTTCCTATGAAGATCAAAATCAAACCTTTTCAGACACAAGCACACGACAAGAGTATGAGAAACCAAACCTGGAACCAGAAACAGAAACAGCACCACGTTTTTGGTATGAGTACTCAGAAGATAGAACTACATATAACAAATTGAGGAGTTTTAACTCCTACCCGGATCTCCGGCAAGAGTCTTTGTGGGTCGCCGGAGATGAACGGTGGCGATTTAGCGATGATACACATGTTAACCGTTACCATGGATTGGACTTAAATTTGAAAGAAGAAAAAGAAGAAGAAGAAAGCATCAAGGACATTGAAGTGAACACATCTTTGAAAGGAAAGAACAAGAAGAAGCAAGGATCAGAAACGCATCAATCTGAAACAATTGAGAAAACAAAAAATAACACTGCTGCAGAGAGAAAGAATAAAAAGGTAATTGTAACGAAGGATGAGAAAATGCAACAATCTTTGAAAGGAAAGAAGAAGCATAGACATAAAAGTGTTGAAAATTTTCAGAACATCATGAATTCTGAACCTCCAAAGAAGAAGAAGCATAGACATAAAAGCGTTGAAAATTTTCAGAGCATTCTGAATTCTGAACCTGCTACTACTATGCCTTCTTCTTCTTCTCCTTTTCATGATTTGTTCTATTCTAAGAAAAACAAACAGAAGAAACTTAACTCTGTTTCGCCGTCACAACATCAAGTTTCAGCTATGATTATGTCAAAAACAAAGGATGATGATTTTTCTGTGATTACCGGTAATGAGTCGCCATTGAATTCAATACCTCCACCGCCTCCTCCTCCACCTCCTTTCAAGATGCCGGCATGGAAGTTCAAGGTGCAGGGTGACTTTGTTAGAATAGATAGCATTAGTAGTTCAAGTTCGGTAGATATAGATGAAGAAGTAGTGGAGTTACCAACCATTAGTGGTGAAGAACCTGGAATTGATCTACTGGTGTATCCAAATCCCAACCCAGGTGTTGATAACAAAGCTGGTAGTTTCATTGAAAGTTTCAGAGCTGGTTTAAGGATGGAGAAAATGAATTCTTTGAGGAAGCAGGAGATAGGGAGGTCTAATCTCTATGGTACCCTTCATCACCAAAACCATTAA
Protein sequence

>MS.gene85244.t1

MEGEEEISSPFWLQNSGANRRRLSRSYSLFLSSGTVIIVLLVIALAFILVIVPTLHSFTSHIFKPNSVKKSWDSLNLLLVLFAIFCGFLSKNNNNESPRSYEDQNQTFSDTSTRQEYEKPNLEPETETAPRFWYEYSEDRTTYNKLRSFNSYPDLRQESLWVAGDERWRFSDDTHVNRYHGLDLNLKEEKEEEESIKDIEVNTSLKGKNKKKQGSETHQSETIEKTKNNTAAERKNKKVIVTKDEKMQQSLKGKKKHRHKSVENFQNIMNSEPPKKKKHRHKSVENFQSILNSEPATTMPSSSSPFHDLFYSKKNKQKKLNSVSPSQHQVSAMIMSKTKDDDFSVITGNESPLNSIPPPPPPPPPFKMPAWKFKVQGDFVRIDSISSSSSVDIDEEVVELPTISGEEPGIDLLVYPNPNPGVDNKAGSFIESFRAGLRMEKMNSLRKQEIGRSNLYGTLHHQNH