Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85444.t1 | XP_003624056.1 | 99.5 | 426 | 2 | 0 | 1 | 426 | 1 | 426 | 4.80E-242 | 846.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85444.t1 | Q8RX88 | 83.8 | 421 | 68 | 0 | 1 | 421 | 1 | 421 | 2.9e-203 | 709.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85444.t1 | G7L6L7 | 99.5 | 426 | 2 | 0 | 1 | 426 | 1 | 426 | 3.5e-242 | 846.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene058657 | MS.gene85444 | 0.868346 | 6.99E-66 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85444.t1 | MTR_7g078760 | 99.531 | 426 | 2 | 0 | 1 | 426 | 1 | 426 | 0.0 | 869 |
MS.gene85444.t1 | MTR_8g028680 | 59.132 | 438 | 157 | 5 | 1 | 421 | 1 | 433 | 1.93e-167 | 477 |
MS.gene85444.t1 | MTR_4g065940 | 63.158 | 95 | 4 | 1 | 246 | 340 | 15 | 78 | 2.93e-28 | 107 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85444.t1 | AT4G01320 | 83.848 | 421 | 68 | 0 | 1 | 421 | 1 | 421 | 0.0 | 730 |
MS.gene85444.t1 | AT4G01320 | 84.108 | 409 | 65 | 0 | 13 | 421 | 1 | 409 | 0.0 | 711 |
MS.gene85444.t1 | AT4G01320 | 84.108 | 409 | 65 | 0 | 13 | 421 | 1 | 409 | 0.0 | 711 |
Find 88 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTACTCCTTCTAAAGATTT+TGG | 0.157053 | 7.2:-26957266 | None:intergenic |
CATTGGACTCATCCTATTTC+AGG | 0.175438 | 7.2:+26961796 | MS.gene85444:CDS |
GAGCAGATCATTTGAATTTC+AGG | 0.201726 | 7.2:+26963186 | MS.gene85444:CDS |
ACTGATCTGTTCCAAAGTTT+TGG | 0.223216 | 7.2:+26961752 | MS.gene85444:CDS |
AATTGGAGGACCAATTATTA+TGG | 0.255741 | 7.2:-26958283 | None:intergenic |
ATTCTTACACTCTTGCAATT+TGG | 0.261444 | 7.2:+26961704 | MS.gene85444:CDS |
CATACCTGGCGATCTATCTT+TGG | 0.277448 | 7.2:+26958538 | MS.gene85444:CDS |
TCAAAGTATTGCCCTGGTTT+TGG | 0.280912 | 7.2:+26957557 | MS.gene85444:CDS |
TTCTTCAGGGACATGATTAA+AGG | 0.282352 | 7.2:+26958249 | MS.gene85444:CDS |
TATCTTTGGGCATTTATGTT+TGG | 0.289698 | 7.2:+26958552 | MS.gene85444:CDS |
GTCCCGTCATGGCTTTAATA+AGG | 0.295172 | 7.2:+26958062 | MS.gene85444:CDS |
AAGAAGTTGTTTGTTGTTGA+TGG | 0.299518 | 7.2:+26959838 | MS.gene85444:CDS |
AAAGTTGAGTAAAGAGAAAA+AGG | 0.329340 | 7.2:-26958030 | None:intergenic |
TATTCAAAAGCACCTGAAAT+AGG | 0.335673 | 7.2:-26961808 | None:intergenic |
ACTCTTCCAAAATCTTTAGA+AGG | 0.345076 | 7.2:+26957260 | MS.gene85444:CDS |
CTCCAGCAACTAGTCAGTTT+TGG | 0.346308 | 7.2:+26963151 | MS.gene85444:CDS |
TCCTCCCCTTGTTGAAAGAT+TGG | 0.352311 | 7.2:+26963612 | MS.gene85444:CDS |
TCACCAACGCATGAACAAAA+TGG | 0.356203 | 7.2:-26957504 | None:intergenic |
AAGAGTGGAGCTATTAGAAT+TGG | 0.357379 | 7.2:-26958603 | None:intergenic |
TCTGACTTCTCTGACTTATC+TGG | 0.360626 | 7.2:-26963649 | None:intergenic |
TAGATTTCTCAAATTTCTCT+TGG | 0.371414 | 7.2:-26957292 | None:intergenic |
AGCTGGTCTTGTGAAATTAC+AGG | 0.384249 | 7.2:+26963442 | MS.gene85444:CDS |
TTCTCTCTGAGTGGACCATC+TGG | 0.385423 | 7.2:-26959778 | None:intergenic |
AAACACCATGGTTATTCTTC+AGG | 0.395992 | 7.2:+26958235 | MS.gene85444:CDS |
GTCTATTGATTGCAGAAATC+AGG | 0.407821 | 7.2:+26957651 | MS.gene85444:intron |
ATACCTGGCGATCTATCTTT+GGG | 0.416163 | 7.2:+26958539 | MS.gene85444:CDS |
GACCAAAACTGACTAGTTGC+TGG | 0.416907 | 7.2:-26963153 | None:intergenic |
TTATGACACATTAGTTCAAC+AGG | 0.417625 | 7.2:+26960085 | MS.gene85444:CDS |
CAACCTCTTATCAAGACTAT+AGG | 0.418001 | 7.2:-26957318 | None:intergenic |
CAATGAAGGTGTACACAGTA+TGG | 0.427524 | 7.2:-26961243 | None:intergenic |
AATGAAATATTTCATACCCT+TGG | 0.427931 | 7.2:+26957708 | MS.gene85444:CDS |
ACAATGATTGCAGCCACAAT+TGG | 0.433177 | 7.2:-26958300 | None:intergenic |
ACAACAAACAACTTCTTCAA+TGG | 0.442140 | 7.2:-26959832 | None:intergenic |
CCCTACATGGAAGCTGTTGT+CGG | 0.445864 | 7.2:+26956086 | MS.gene85444:CDS |
GTACACCTTCATTGCTATGC+AGG | 0.450398 | 7.2:+26961252 | MS.gene85444:CDS |
CTTGAAGAATCCATACATAT+AGG | 0.451579 | 7.2:-26960045 | None:intergenic |
AACCATGGCGTTTCCCTACA+TGG | 0.451982 | 7.2:+26956073 | None:intergenic |
ACTTCGCAGGCCTATATGTA+TGG | 0.453143 | 7.2:+26960035 | MS.gene85444:intron |
ATGCCCAAAGATAGATCGCC+AGG | 0.460835 | 7.2:-26958542 | None:intergenic |
GATACACAGCCAGTCCTCAT+TGG | 0.461646 | 7.2:+26961779 | MS.gene85444:CDS |
GCTGTCATTGCTCATGAGCT+TGG | 0.464174 | 7.2:+26961205 | MS.gene85444:CDS |
CTTACACTCTTGCAATTTGG+AGG | 0.464916 | 7.2:+26961707 | MS.gene85444:CDS |
CTTCTTCAATGGAAAATTGA+GGG | 0.466372 | 7.2:-26959821 | None:intergenic |
CAAAGATAGATCGCCAGGTA+TGG | 0.469501 | 7.2:-26958537 | None:intergenic |
GATGGCTTTGCTAAGAAGCT+TGG | 0.475579 | 7.2:+26963401 | MS.gene85444:CDS |
AACACCATGGTTATTCTTCA+GGG | 0.485333 | 7.2:+26958236 | MS.gene85444:CDS |
GTGTATCAAACCCAAAACTT+TGG | 0.493484 | 7.2:-26961763 | None:intergenic |
TGCAATCATTGTAATAGTAC+AGG | 0.497010 | 7.2:+26958311 | MS.gene85444:CDS |
ACTTCTTCAATGGAAAATTG+AGG | 0.499325 | 7.2:-26959822 | None:intergenic |
TTGCTCATGAGCTTGGACAC+TGG | 0.501838 | 7.2:+26961212 | MS.gene85444:CDS |
CTTGGATTTGCGACAACACA+AGG | 0.503174 | 7.2:+26957223 | MS.gene85444:CDS |
GAGCCTATAGTCTTGATAAG+AGG | 0.511670 | 7.2:+26957315 | MS.gene85444:CDS |
ACAAACCTGCATAGCAATGA+AGG | 0.515003 | 7.2:-26961257 | None:intergenic |
CCGACAACAGCTTCCATGTA+GGG | 0.525236 | 7.2:-26956086 | None:intergenic |
TATCTTCCTACGTAGGCTGA+TGG | 0.540706 | 7.2:+26963383 | MS.gene85444:intron |
TGTACTTCAAAGTATTGCCC+TGG | 0.546955 | 7.2:+26957551 | MS.gene85444:CDS |
AATTCTCACCTTCCAAAACC+AGG | 0.548885 | 7.2:-26957569 | None:intergenic |
ATTGCTGTGACTCGATCTTG+TGG | 0.551003 | 7.2:-26959863 | None:intergenic |
ATGATTGCAGCCACAATTGG+AGG | 0.553279 | 7.2:-26958297 | None:intergenic |
TATTCATCTTCGCTACGAGC+TGG | 0.555436 | 7.2:+26963425 | MS.gene85444:CDS |
ATTCAAATGATCTGCTCACA+AGG | 0.557840 | 7.2:-26963180 | None:intergenic |
AATAATTGGTCCTCCAATTG+TGG | 0.559277 | 7.2:+26958287 | MS.gene85444:CDS |
TGGTTTGATGATCTGGTCAC+AGG | 0.559653 | 7.2:+26957740 | MS.gene85444:CDS |
TTTGAATATTTGCAGAAAGG+AGG | 0.560706 | 7.2:+26958513 | MS.gene85444:intron |
AACCTTATTAAAGCCATGAC+GGG | 0.563471 | 7.2:-26958064 | None:intergenic |
AACTGACTAGTTGCTGGAGT+GGG | 0.569989 | 7.2:-26963147 | None:intergenic |
GCAGAAAGGAGGTCCATACC+TGG | 0.570962 | 7.2:+26958524 | MS.gene85444:intron |
TTTGTGATTGAGTCCCGTCA+TGG | 0.571395 | 7.2:+26958051 | MS.gene85444:CDS |
ACGCATGAACAAAATGGAAG+TGG | 0.573573 | 7.2:-26957498 | None:intergenic |
AGGATGAGTCCAATGAGGAC+TGG | 0.592039 | 7.2:-26961788 | None:intergenic |
GTGCAGCCAATCTTTCAACA+AGG | 0.601766 | 7.2:-26963618 | None:intergenic |
ATGGATTCTTCAAGAACAAG+AGG | 0.602414 | 7.2:+26960054 | MS.gene85444:CDS |
GCCAATCTTTCAACAAGGGG+AGG | 0.604396 | 7.2:-26963613 | None:intergenic |
TCTGGTAACCAGCTTCCAGA+TGG | 0.616397 | 7.2:+26959763 | MS.gene85444:intron |
TGCAGCCAATCTTTCAACAA+GGG | 0.616439 | 7.2:-26963617 | None:intergenic |
CAGCTATGAATACAGATCCA+TGG | 0.622966 | 7.2:+26963566 | MS.gene85444:CDS |
ACCGACAACAGCTTCCATGT+AGG | 0.631757 | 7.2:-26956087 | None:intergenic |
GGAGTGAACTTATTGAAGAG+TGG | 0.635001 | 7.2:-26958618 | None:intergenic |
GCAGCCAATCTTTCAACAAG+GGG | 0.637075 | 7.2:-26963616 | None:intergenic |
AAACTGACTAGTTGCTGGAG+TGG | 0.637131 | 7.2:-26963148 | None:intergenic |
GAACCTTATTAAAGCCATGA+CGG | 0.641005 | 7.2:-26958065 | None:intergenic |
CTTCAATGGAAAATTGAGGG+AGG | 0.644359 | 7.2:-26959818 | None:intergenic |
ATTCTCACCTTCCAAAACCA+GGG | 0.646241 | 7.2:-26957568 | None:intergenic |
TAGTGATAAGCAGAGTACCA+TGG | 0.657764 | 7.2:-26963583 | None:intergenic |
TTCCATGTAGGGAAACGCCA+TGG | 0.667003 | 7.2:-26956075 | None:intergenic |
ATGTCCCTGAAGAATAACCA+TGG | 0.683859 | 7.2:-26958240 | None:intergenic |
GAAATAGGATGAGTCCAATG+AGG | 0.707590 | 7.2:-26961793 | None:intergenic |
CTATCCTACAGCAAACACCA+TGG | 0.720457 | 7.2:+26958223 | MS.gene85444:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 26956077 | 26963675 | 26956077 | ID=MS.gene85444 |
chr7.2 | mRNA | 26956077 | 26963675 | 26956077 | ID=MS.gene85444.t1;Parent=MS.gene85444 |
chr7.2 | exon | 26956077 | 26956107 | 26956077 | ID=MS.gene85444.t1.exon1;Parent=MS.gene85444.t1 |
chr7.2 | CDS | 26956077 | 26956107 | 26956077 | ID=cds.MS.gene85444.t1;Parent=MS.gene85444.t1 |
chr7.2 | exon | 26957189 | 26957336 | 26957189 | ID=MS.gene85444.t1.exon2;Parent=MS.gene85444.t1 |
chr7.2 | CDS | 26957189 | 26957336 | 26957189 | ID=cds.MS.gene85444.t1;Parent=MS.gene85444.t1 |
chr7.2 | exon | 26957498 | 26957582 | 26957498 | ID=MS.gene85444.t1.exon3;Parent=MS.gene85444.t1 |
chr7.2 | CDS | 26957498 | 26957582 | 26957498 | ID=cds.MS.gene85444.t1;Parent=MS.gene85444.t1 |
chr7.2 | exon | 26957666 | 26957761 | 26957666 | ID=MS.gene85444.t1.exon4;Parent=MS.gene85444.t1 |
chr7.2 | CDS | 26957666 | 26957761 | 26957666 | ID=cds.MS.gene85444.t1;Parent=MS.gene85444.t1 |
chr7.2 | exon | 26958018 | 26958083 | 26958018 | ID=MS.gene85444.t1.exon5;Parent=MS.gene85444.t1 |
chr7.2 | CDS | 26958018 | 26958083 | 26958018 | ID=cds.MS.gene85444.t1;Parent=MS.gene85444.t1 |
chr7.2 | exon | 26958234 | 26958332 | 26958234 | ID=MS.gene85444.t1.exon6;Parent=MS.gene85444.t1 |
chr7.2 | CDS | 26958234 | 26958332 | 26958234 | ID=cds.MS.gene85444.t1;Parent=MS.gene85444.t1 |
chr7.2 | exon | 26958528 | 26958641 | 26958528 | ID=MS.gene85444.t1.exon7;Parent=MS.gene85444.t1 |
chr7.2 | CDS | 26958528 | 26958641 | 26958528 | ID=cds.MS.gene85444.t1;Parent=MS.gene85444.t1 |
chr7.2 | exon | 26959775 | 26959885 | 26959775 | ID=MS.gene85444.t1.exon8;Parent=MS.gene85444.t1 |
chr7.2 | CDS | 26959775 | 26959885 | 26959775 | ID=cds.MS.gene85444.t1;Parent=MS.gene85444.t1 |
chr7.2 | exon | 26960044 | 26960106 | 26960044 | ID=MS.gene85444.t1.exon9;Parent=MS.gene85444.t1 |
chr7.2 | CDS | 26960044 | 26960106 | 26960044 | ID=cds.MS.gene85444.t1;Parent=MS.gene85444.t1 |
chr7.2 | exon | 26961181 | 26961273 | 26961181 | ID=MS.gene85444.t1.exon10;Parent=MS.gene85444.t1 |
chr7.2 | CDS | 26961181 | 26961273 | 26961181 | ID=cds.MS.gene85444.t1;Parent=MS.gene85444.t1 |
chr7.2 | exon | 26961704 | 26961817 | 26961704 | ID=MS.gene85444.t1.exon11;Parent=MS.gene85444.t1 |
chr7.2 | CDS | 26961704 | 26961817 | 26961704 | ID=cds.MS.gene85444.t1;Parent=MS.gene85444.t1 |
chr7.2 | exon | 26963136 | 26963207 | 26963136 | ID=MS.gene85444.t1.exon12;Parent=MS.gene85444.t1 |
chr7.2 | CDS | 26963136 | 26963207 | 26963136 | ID=cds.MS.gene85444.t1;Parent=MS.gene85444.t1 |
chr7.2 | exon | 26963398 | 26963463 | 26963398 | ID=MS.gene85444.t1.exon13;Parent=MS.gene85444.t1 |
chr7.2 | CDS | 26963398 | 26963463 | 26963398 | ID=cds.MS.gene85444.t1;Parent=MS.gene85444.t1 |
chr7.2 | exon | 26963553 | 26963675 | 26963553 | ID=MS.gene85444.t1.exon14;Parent=MS.gene85444.t1 |
chr7.2 | CDS | 26963553 | 26963675 | 26963553 | ID=cds.MS.gene85444.t1;Parent=MS.gene85444.t1 |
Gene Sequence |
Protein sequence |