Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85486.t1 | RHN65821.1 | 94.8 | 233 | 12 | 0 | 122 | 354 | 188 | 420 | 8.10E-118 | 433.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85486.t1 | F4JCY2 | 61.5 | 244 | 88 | 3 | 114 | 354 | 469 | 709 | 1.1e-78 | 295.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85486.t1 | G7IW32 | 94.8 | 233 | 12 | 0 | 122 | 354 | 479 | 711 | 5.8e-118 | 433.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054651 | MS.gene85486 | 0.80168 | 8.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85486.t1 | MTR_3g019070 | 94.850 | 233 | 12 | 0 | 122 | 354 | 479 | 711 | 1.55e-155 | 454 |
| MS.gene85486.t1 | MTR_3g019080 | 69.630 | 135 | 10 | 1 | 1 | 104 | 887 | 1021 | 7.27e-57 | 199 |
| MS.gene85486.t1 | MTR_7g011610 | 37.931 | 232 | 142 | 2 | 124 | 354 | 480 | 710 | 3.53e-44 | 162 |
| MS.gene85486.t1 | MTR_5g042560 | 39.574 | 235 | 137 | 3 | 122 | 354 | 479 | 710 | 7.05e-43 | 158 |
| MS.gene85486.t1 | MTR_6g012870 | 39.407 | 236 | 137 | 3 | 122 | 354 | 477 | 709 | 1.32e-42 | 157 |
| MS.gene85486.t1 | MTR_4g082340 | 37.453 | 267 | 153 | 9 | 96 | 353 | 286 | 547 | 5.26e-42 | 154 |
| MS.gene85486.t1 | MTR_4g082340 | 37.453 | 267 | 153 | 9 | 96 | 353 | 284 | 545 | 6.15e-42 | 154 |
| MS.gene85486.t1 | MTR_4g082340 | 37.453 | 267 | 153 | 9 | 96 | 353 | 452 | 713 | 2.10e-41 | 154 |
| MS.gene85486.t1 | MTR_4g082340 | 37.453 | 267 | 153 | 9 | 96 | 353 | 461 | 722 | 2.45e-41 | 154 |
| MS.gene85486.t1 | MTR_1g017170 | 34.902 | 255 | 159 | 4 | 99 | 351 | 448 | 697 | 9.31e-41 | 152 |
| MS.gene85486.t1 | MTR_4g082340 | 39.252 | 214 | 120 | 6 | 96 | 303 | 452 | 661 | 8.85e-37 | 140 |
| MS.gene85486.t1 | MTR_5g027510 | 30.677 | 251 | 162 | 5 | 86 | 325 | 454 | 703 | 4.43e-33 | 130 |
| MS.gene85486.t1 | MTR_3g103560 | 34.615 | 234 | 152 | 1 | 99 | 331 | 452 | 685 | 6.74e-32 | 127 |
| MS.gene85486.t1 | MTR_5g086610 | 33.019 | 212 | 138 | 2 | 118 | 326 | 492 | 702 | 4.48e-31 | 124 |
| MS.gene85486.t1 | MTR_4g132570 | 34.615 | 208 | 128 | 3 | 124 | 326 | 500 | 704 | 2.85e-30 | 122 |
| MS.gene85486.t1 | MTR_7g094570 | 29.707 | 239 | 153 | 3 | 90 | 315 | 459 | 695 | 3.95e-28 | 115 |
| MS.gene85486.t1 | MTR_2g018780 | 32.243 | 214 | 135 | 5 | 116 | 326 | 486 | 692 | 5.40e-22 | 97.8 |
| MS.gene85486.t1 | MTR_6g012870 | 39.823 | 113 | 63 | 2 | 122 | 232 | 477 | 586 | 3.35e-17 | 83.2 |
| MS.gene85486.t1 | MTR_4g082340 | 36.429 | 140 | 79 | 6 | 96 | 229 | 452 | 587 | 1.36e-13 | 72.4 |
| MS.gene85486.t1 | MTR_1g017170 | 31.613 | 155 | 99 | 3 | 99 | 252 | 448 | 596 | 3.22e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85486.t1 | AT3G54510 | 61.475 | 244 | 88 | 3 | 114 | 354 | 290 | 530 | 2.17e-102 | 311 |
| MS.gene85486.t1 | AT3G54510 | 61.475 | 244 | 88 | 3 | 114 | 354 | 374 | 614 | 4.38e-101 | 311 |
| MS.gene85486.t1 | AT3G54510 | 61.475 | 244 | 88 | 3 | 114 | 354 | 374 | 614 | 4.38e-101 | 311 |
| MS.gene85486.t1 | AT3G54510 | 61.475 | 244 | 88 | 3 | 114 | 354 | 469 | 709 | 5.82e-100 | 311 |
| MS.gene85486.t1 | AT3G01100 | 40.930 | 215 | 126 | 1 | 122 | 336 | 364 | 577 | 5.99e-50 | 176 |
| MS.gene85486.t1 | AT3G01100 | 40.930 | 215 | 126 | 1 | 122 | 336 | 479 | 692 | 2.64e-49 | 176 |
| MS.gene85486.t1 | AT3G01100 | 40.930 | 215 | 126 | 1 | 122 | 336 | 525 | 738 | 4.98e-49 | 176 |
| MS.gene85486.t1 | AT3G54510 | 66.379 | 116 | 36 | 1 | 114 | 229 | 374 | 486 | 1.22e-45 | 162 |
| MS.gene85486.t1 | AT3G54510 | 66.379 | 116 | 36 | 1 | 114 | 229 | 469 | 581 | 5.59e-45 | 162 |
| MS.gene85486.t1 | AT1G58520 | 38.189 | 254 | 156 | 1 | 98 | 351 | 337 | 589 | 3.61e-40 | 150 |
| MS.gene85486.t1 | AT1G58520 | 38.189 | 254 | 156 | 1 | 98 | 351 | 455 | 707 | 8.43e-40 | 149 |
| MS.gene85486.t1 | AT1G58520 | 38.189 | 254 | 156 | 1 | 98 | 351 | 455 | 707 | 8.43e-40 | 149 |
| MS.gene85486.t1 | AT1G58520 | 38.189 | 254 | 156 | 1 | 98 | 351 | 455 | 707 | 8.43e-40 | 149 |
| MS.gene85486.t1 | AT1G58520 | 38.189 | 254 | 156 | 1 | 98 | 351 | 455 | 707 | 8.43e-40 | 149 |
| MS.gene85486.t1 | AT1G58520 | 38.189 | 254 | 156 | 1 | 98 | 351 | 455 | 707 | 8.43e-40 | 149 |
| MS.gene85486.t1 | AT1G69450 | 34.599 | 237 | 150 | 2 | 119 | 353 | 470 | 703 | 7.41e-39 | 147 |
| MS.gene85486.t1 | AT1G69450 | 34.599 | 237 | 150 | 2 | 119 | 353 | 470 | 703 | 7.41e-39 | 147 |
| MS.gene85486.t1 | AT1G10090 | 38.889 | 234 | 142 | 1 | 98 | 331 | 452 | 684 | 7.63e-39 | 147 |
| MS.gene85486.t1 | AT1G11960 | 34.241 | 257 | 145 | 8 | 86 | 325 | 455 | 704 | 3.22e-35 | 136 |
| MS.gene85486.t1 | AT1G11960 | 34.241 | 257 | 145 | 8 | 86 | 325 | 455 | 704 | 3.22e-35 | 136 |
| MS.gene85486.t1 | AT1G69450 | 31.061 | 264 | 150 | 3 | 119 | 353 | 470 | 730 | 3.06e-34 | 134 |
| MS.gene85486.t1 | AT1G32090 | 31.939 | 263 | 162 | 6 | 86 | 334 | 455 | 714 | 6.95e-34 | 132 |
| MS.gene85486.t1 | AT4G04340 | 33.195 | 241 | 150 | 3 | 86 | 315 | 457 | 697 | 5.03e-33 | 130 |
| MS.gene85486.t1 | AT4G04340 | 33.195 | 241 | 150 | 3 | 86 | 315 | 457 | 697 | 5.03e-33 | 130 |
| MS.gene85486.t1 | AT4G04340 | 33.195 | 241 | 150 | 3 | 86 | 315 | 457 | 697 | 5.03e-33 | 130 |
| MS.gene85486.t1 | AT4G22120 | 31.801 | 261 | 165 | 5 | 86 | 334 | 456 | 715 | 5.27e-33 | 130 |
| MS.gene85486.t1 | AT4G22120 | 31.801 | 261 | 165 | 5 | 86 | 334 | 456 | 715 | 5.27e-33 | 130 |
| MS.gene85486.t1 | AT4G22120 | 31.801 | 261 | 165 | 5 | 86 | 334 | 456 | 715 | 5.27e-33 | 130 |
| MS.gene85486.t1 | AT4G22120 | 31.801 | 261 | 165 | 5 | 86 | 334 | 456 | 715 | 5.27e-33 | 130 |
| MS.gene85486.t1 | AT4G22120 | 31.801 | 261 | 165 | 5 | 86 | 334 | 456 | 715 | 5.27e-33 | 130 |
| MS.gene85486.t1 | AT4G22120 | 31.801 | 261 | 165 | 5 | 86 | 334 | 456 | 715 | 5.27e-33 | 130 |
| MS.gene85486.t1 | AT4G15430 | 31.120 | 241 | 155 | 3 | 86 | 315 | 455 | 695 | 7.66e-32 | 127 |
| MS.gene85486.t1 | AT4G02900 | 31.579 | 247 | 156 | 5 | 118 | 354 | 332 | 575 | 1.48e-31 | 125 |
| MS.gene85486.t1 | AT4G02900 | 31.579 | 247 | 156 | 5 | 118 | 354 | 493 | 736 | 2.05e-31 | 125 |
| MS.gene85486.t1 | AT4G02900 | 31.579 | 247 | 156 | 5 | 118 | 354 | 493 | 736 | 2.05e-31 | 125 |
| MS.gene85486.t1 | AT4G02900 | 31.579 | 247 | 156 | 5 | 118 | 354 | 493 | 736 | 2.31e-31 | 125 |
| MS.gene85486.t1 | AT3G21620 | 29.740 | 269 | 176 | 5 | 89 | 345 | 456 | 723 | 2.21e-30 | 122 |
| MS.gene85486.t1 | AT4G15430 | 30.992 | 242 | 155 | 4 | 86 | 315 | 455 | 696 | 2.73e-30 | 122 |
| MS.gene85486.t1 | AT1G62320 | 29.885 | 261 | 170 | 5 | 86 | 334 | 455 | 714 | 1.08e-29 | 120 |
| MS.gene85486.t1 | AT1G62320 | 29.885 | 261 | 170 | 5 | 86 | 334 | 455 | 714 | 1.08e-29 | 120 |
| MS.gene85486.t1 | AT1G62320 | 29.885 | 261 | 170 | 5 | 86 | 334 | 453 | 712 | 1.15e-29 | 120 |
| MS.gene85486.t1 | AT1G62320 | 29.119 | 261 | 165 | 6 | 86 | 334 | 453 | 705 | 2.95e-26 | 110 |
| MS.gene85486.t1 | AT1G30360 | 31.557 | 244 | 141 | 6 | 92 | 321 | 450 | 681 | 2.87e-21 | 95.5 |
| MS.gene85486.t1 | AT3G01100 | 42.202 | 109 | 62 | 1 | 122 | 230 | 479 | 586 | 5.58e-20 | 91.7 |
| MS.gene85486.t1 | AT1G11960 | 32.051 | 156 | 91 | 4 | 86 | 228 | 455 | 608 | 6.13e-15 | 76.6 |
| MS.gene85486.t1 | AT1G62320 | 29.032 | 155 | 99 | 3 | 86 | 229 | 455 | 609 | 8.05e-13 | 70.1 |
Find 71 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACTATGATTGGTCTATT+TGG | 0.145823 | 3.4:-12569419 | MS.gene85486:CDS |
| TCCAACCTGGCTTACTTATT+TGG | 0.161091 | 3.4:-12569911 | MS.gene85486:CDS |
| CTACAATGATCAAACCATTT+TGG | 0.197895 | 3.4:+12571185 | None:intergenic |
| CATTGCTTGCATTCTTATAA+TGG | 0.223751 | 3.4:+12569054 | None:intergenic |
| GTCTCTCTCTCAATACTAAT+TGG | 0.245571 | 3.4:-12569801 | MS.gene85486:CDS |
| CCAACCTGGCTTACTTATTT+GGG | 0.255996 | 3.4:-12569910 | MS.gene85486:CDS |
| CAGGATCAAGTATTCCAAAA+TGG | 0.301275 | 3.4:-12571199 | MS.gene85486:CDS |
| ATCTTGACTGATGGACTATC+TGG | 0.311778 | 3.4:-12569951 | MS.gene85486:CDS |
| ACGAAACATGCGGACAATAT+TGG | 0.311983 | 3.4:-12569487 | MS.gene85486:CDS |
| TTGGAATGCTTATGATATCT+TGG | 0.314608 | 3.4:+12570484 | None:intergenic |
| CAGTAGTGGTATGGTTGATA+TGG | 0.326888 | 3.4:+12569373 | None:intergenic |
| CTCACGAGCGTAAAATGATA+TGG | 0.327546 | 3.4:+12571151 | None:intergenic |
| TGGAATGCTTATGATATCTT+GGG | 0.331854 | 3.4:+12570485 | None:intergenic |
| CTCATGCAAATTACTATGAT+TGG | 0.356193 | 3.4:-12569428 | MS.gene85486:CDS |
| ACGGCCGTGGCAAGTTCATT+TGG | 0.361235 | 3.4:+12570465 | None:intergenic |
| CTTTCACCAACATTCTTTCA+AGG | 0.362754 | 3.4:-12569300 | MS.gene85486:intron |
| ACAACACACACACAAATACT+AGG | 0.370886 | 3.4:+12571122 | None:intergenic |
| CAGAAGTAAACAATAAGAAA+TGG | 0.388836 | 3.4:+12569744 | None:intergenic |
| GCTTTAACGTCTTGTACTCT+TGG | 0.389648 | 3.4:-12569885 | MS.gene85486:CDS |
| TTGATGGCACAAGCTGTTCA+TGG | 0.403339 | 3.4:-12570870 | MS.gene85486:CDS |
| AAACTCACTGGTTGCAAACC+TGG | 0.419217 | 3.4:+12569020 | None:intergenic |
| TCTTATAATGGAACTCCAAC+TGG | 0.424652 | 3.4:+12569066 | None:intergenic |
| AGTATTGAGAGAGAGACAAA+AGG | 0.427369 | 3.4:+12569807 | None:intergenic |
| GTATTGAGAGAGAGACAAAA+GGG | 0.431851 | 3.4:+12569808 | None:intergenic |
| CTTATTGTTTACTTCTGTCT+AGG | 0.439993 | 3.4:-12569738 | MS.gene85486:CDS |
| AAGGATTCTTCTCTCTTTGA+CGG | 0.442184 | 3.4:+12569862 | None:intergenic |
| TTGTGAAGATGAGCATTTGA+TGG | 0.448002 | 3.4:-12570886 | MS.gene85486:CDS |
| GAGAGTGTGATTATTGATAA+TGG | 0.467625 | 3.4:+12570962 | None:intergenic |
| AGAAGTAAACAATAAGAAAT+GGG | 0.477858 | 3.4:+12569745 | None:intergenic |
| TCTTTGGAAGTTCTCCAACC+TGG | 0.481968 | 3.4:-12569924 | MS.gene85486:CDS |
| AAAGGGATAATTCTGAAGTA+AGG | 0.486674 | 3.4:+12569825 | None:intergenic |
| CCCAAATAAGTAAGCCAGGT+TGG | 0.492587 | 3.4:+12569910 | None:intergenic |
| AAAGAATGTTGGTGAAAGGA+AGG | 0.492676 | 3.4:+12569305 | None:intergenic |
| ATGGCAATTGTGAAATGGTA+TGG | 0.507980 | 3.4:-12570837 | MS.gene85486:CDS |
| GAAGATCATGAAGATACTAA+TGG | 0.509109 | 3.4:+12568972 | None:intergenic |
| GAAGAATGGCAATTGTGAAA+TGG | 0.517447 | 3.4:-12570842 | MS.gene85486:CDS |
| TCTGATGCCGCGAAACTCAC+TGG | 0.519875 | 3.4:+12569008 | None:intergenic |
| GTGACATACATCTTGACTGA+TGG | 0.521549 | 3.4:-12569960 | MS.gene85486:CDS |
| TAAGGCAATGAATAAAGATA+AGG | 0.524710 | 3.4:+12569843 | None:intergenic |
| AGATACTAATGGTGTTGAGC+TGG | 0.527944 | 3.4:+12568983 | None:intergenic |
| AGAATGTAGTGATGAATGTA+TGG | 0.532580 | 3.4:+12569464 | None:intergenic |
| ACAACATACTTGGGCGGAGA+CGG | 0.534340 | 3.4:+12570446 | None:intergenic |
| GCATCCCAAATAAGTAAGCC+AGG | 0.535095 | 3.4:+12569906 | None:intergenic |
| AAACATGGTTAGAACATGGT+TGG | 0.547308 | 3.4:-12570935 | MS.gene85486:CDS |
| TGGTTTAGTGTACGCAGTAG+TGG | 0.549452 | 3.4:-12569781 | MS.gene85486:CDS |
| GGAATGCTTATGATATCTTG+GGG | 0.550523 | 3.4:+12570486 | None:intergenic |
| TTTGCAACCAGTGAGTTTCG+CGG | 0.561444 | 3.4:-12569015 | MS.gene85486:CDS |
| CTTGAAAGAATGTTGGTGAA+AGG | 0.564792 | 3.4:+12569301 | None:intergenic |
| ATGGTTGATATGGAAGCAGC+TGG | 0.574167 | 3.4:+12569383 | None:intergenic |
| TGATGAAAAGTGCAGCCAGT+TGG | 0.578956 | 3.4:-12569081 | MS.gene85486:CDS |
| CAACACACACACAAATACTA+GGG | 0.579059 | 3.4:+12571123 | None:intergenic |
| TGTTCATGGAATGAGAAGAA+TGG | 0.581932 | 3.4:-12570856 | MS.gene85486:CDS |
| ATAAGAAATGGGAGCAACAA+TGG | 0.584444 | 3.4:+12569756 | None:intergenic |
| AGCAATGCATATTATCCACC+AGG | 0.590278 | 3.4:-12569038 | MS.gene85486:CDS |
| TACTTGGGCGGAGACGGCCG+TGG | 0.598406 | 3.4:+12570452 | None:intergenic |
| TTTGCATGAGAATGATTGCA+AGG | 0.598945 | 3.4:+12569441 | None:intergenic |
| AAGAATGTTGGTGAAAGGAA+GGG | 0.615905 | 3.4:+12569306 | None:intergenic |
| AGTGTACCTTGAAAGAATGT+TGG | 0.617597 | 3.4:+12569294 | None:intergenic |
| CATTCCAAATGAACTTGCCA+CGG | 0.624491 | 3.4:-12570469 | MS.gene85486:CDS |
| TGTGAACAACAGTAGTGGTA+TGG | 0.625403 | 3.4:+12569364 | None:intergenic |
| ATCAATGTGAACAACAGTAG+TGG | 0.636194 | 3.4:+12569359 | None:intergenic |
| AATGCTTATGATATCTTGGG+GGG | 0.637814 | 3.4:+12570488 | None:intergenic |
| AACCTAACTAGAAAATGATG+AGG | 0.642912 | 3.4:+12571077 | None:intergenic |
| AGAACATGGTTGGAATCATG+TGG | 0.643085 | 3.4:-12570925 | MS.gene85486:CDS |
| GAATGCTTATGATATCTTGG+GGG | 0.645345 | 3.4:+12570487 | None:intergenic |
| CTCACTGGTTGCAAACCTGG+TGG | 0.650681 | 3.4:+12569023 | None:intergenic |
| ATCACACTCTCAGACAAACA+TGG | 0.661540 | 3.4:-12570950 | MS.gene85486:CDS |
| GAAACTACATACGAAACATG+CGG | 0.672560 | 3.4:-12569497 | MS.gene85486:CDS |
| AGACAAACATGGTTAGAACA+TGG | 0.674669 | 3.4:-12570939 | MS.gene85486:CDS |
| ATGGAAACAACATACTTGGG+CGG | 0.691742 | 3.4:+12570440 | None:intergenic |
| ATATGTTGTCTATATCAACC+AGG | 0.716915 | 3.4:-12569715 | MS.gene85486:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAGAAAAAGTGAAAA+TGG | + | chr3.4:12569577-12569596 | None:intergenic | 20.0% |
| !! | AGAAGTAAACAATAAGAAAT+GGG | + | chr3.4:12570441-12570460 | None:intergenic | 20.0% |
| !! | TAAAAGGAATATGTACTATA+TGG | - | chr3.4:12570933-12570952 | MS.gene85486:CDS | 20.0% |
| !! | TATTCAAATGTAAGCATATT+AGG | + | chr3.4:12570149-12570168 | None:intergenic | 20.0% |
| !!! | GATGTTTTCATGAATAATTA+AGG | - | chr3.4:12569824-12569843 | MS.gene85486:CDS | 20.0% |
| ! | ATGAAGGTTGAAAATTAACA+TGG | - | chr3.4:12570586-12570605 | MS.gene85486:intron | 25.0% |
| ! | ATGATATCTTTCATTTGCAT+AGG | - | chr3.4:12569615-12569634 | MS.gene85486:intron | 25.0% |
| ! | CAGAAGTAAACAATAAGAAA+TGG | + | chr3.4:12570442-12570461 | None:intergenic | 25.0% |
| ! | GAATATGTACTATATGGTAT+AGG | - | chr3.4:12570939-12570958 | MS.gene85486:CDS | 25.0% |
| ! | TAAGGCAATGAATAAAGATA+AGG | + | chr3.4:12570343-12570362 | None:intergenic | 25.0% |
| ! | TTACTGAATCTATAATTTCC+CGG | - | chr3.4:12571052-12571071 | MS.gene85486:intron | 25.0% |
| !! | TTAATTTTCAACCTTCATTG+TGG | + | chr3.4:12570584-12570603 | None:intergenic | 25.0% |
| !!! | ATTACTATGATTGGTCTATT+TGG | - | chr3.4:12570764-12570783 | MS.gene85486:intron | 25.0% |
| !!! | CAATAAATGAGTGTTTTAAG+AGG | + | chr3.4:12570506-12570525 | None:intergenic | 25.0% |
| AACCTAACTAGAAAATGATG+AGG | + | chr3.4:12569109-12569128 | None:intergenic | 30.0% | |
| ACAATTATCCTTCGTCTAAA+CGG | - | chr3.4:12569467-12569486 | MS.gene85486:CDS | 30.0% | |
| AGAAATGGAAACAACATACT+TGG | + | chr3.4:12569750-12569769 | None:intergenic | 30.0% | |
| AGAATGTAGTGATGAATGTA+TGG | + | chr3.4:12570722-12570741 | None:intergenic | 30.0% | |
| ATATGTTGTCTATATCAACC+AGG | - | chr3.4:12570468-12570487 | MS.gene85486:CDS | 30.0% | |
| ATTGTTCACATTGAAAGATC+AGG | - | chr3.4:12570549-12570568 | MS.gene85486:intron | 30.0% | |
| CACAATCTTTAACGAGTAAA+AGG | - | chr3.4:12570917-12570936 | MS.gene85486:CDS | 30.0% | |
| CATATTAGGCGATTTCATTA+AGG | + | chr3.4:12570135-12570154 | None:intergenic | 30.0% | |
| CATTGCTTGCATTCTTATAA+TGG | + | chr3.4:12571132-12571151 | None:intergenic | 30.0% | |
| CTCATGCAAATTACTATGAT+TGG | - | chr3.4:12570755-12570774 | MS.gene85486:intron | 30.0% | |
| CTTATTGTTTACTTCTGTCT+AGG | - | chr3.4:12570445-12570464 | MS.gene85486:intron | 30.0% | |
| GAAATGGAAACAACATACTT+GGG | + | chr3.4:12569749-12569768 | None:intergenic | 30.0% | |
| GGGAAATTATAGATTCAGTA+AGG | + | chr3.4:12571053-12571072 | None:intergenic | 30.0% | |
| TAGAAGACAAACATAAGATC+TGG | + | chr3.4:12570612-12570631 | None:intergenic | 30.0% | |
| TCTCTCAAACAATATCACAA+GGG | + | chr3.4:12569929-12569948 | None:intergenic | 30.0% | |
| TGGAATGCTTATGATATCTT+GGG | + | chr3.4:12569701-12569720 | None:intergenic | 30.0% | |
| TTGGAATGCTTATGATATCT+TGG | + | chr3.4:12569702-12569721 | None:intergenic | 30.0% | |
| ! | AGGTTTTCTTTAACCATCAA+CGG | - | chr3.4:12569124-12569143 | MS.gene85486:intron | 30.0% |
| ! | CTACAATGATCAAACCATTT+TGG | + | chr3.4:12569001-12569020 | None:intergenic | 30.0% |
| ! | GAGAGTGTGATTATTGATAA+TGG | + | chr3.4:12569224-12569243 | None:intergenic | 30.0% |
| ! | TGACCATTCTTGTAGAATTT+TGG | + | chr3.4:12569427-12569446 | None:intergenic | 30.0% |
| ! | TTCTAAAAAGTGATGTTGCA+TGG | - | chr3.4:12569530-12569549 | MS.gene85486:intron | 30.0% |
| !! | AAAGGGATAATTCTGAAGTA+AGG | + | chr3.4:12570361-12570380 | None:intergenic | 30.0% |
| !!! | ATTTGTGTGTGTGTTGTTTT+TGG | - | chr3.4:12569067-12569086 | MS.gene85486:CDS | 30.0% |
| AAACATGGTTAGAACATGGT+TGG | - | chr3.4:12569248-12569267 | MS.gene85486:intron | 35.0% | |
| AAGAGGTTTACAAACATACC+TGG | + | chr3.4:12570489-12570508 | None:intergenic | 35.0% | |
| AAGGATTCTTCTCTCTTTGA+CGG | + | chr3.4:12570324-12570343 | None:intergenic | 35.0% | |
| AATGCTTATGATATCTTGGG+GGG | + | chr3.4:12569698-12569717 | None:intergenic | 35.0% | |
| ACAACACACACACAAATACT+AGG | + | chr3.4:12569064-12569083 | None:intergenic | 35.0% | |
| AGACAAACATGGTTAGAACA+TGG | - | chr3.4:12569244-12569263 | MS.gene85486:intron | 35.0% | |
| AGTGTACCTTGAAAGAATGT+TGG | + | chr3.4:12570892-12570911 | None:intergenic | 35.0% | |
| ATAAGAAATGGGAGCAACAA+TGG | + | chr3.4:12570430-12570449 | None:intergenic | 35.0% | |
| ATAATTAAGGTGCAGTTCCA+AGG | - | chr3.4:12569837-12569856 | MS.gene85486:CDS | 35.0% | |
| ATCAATGTGAACAACAGTAG+TGG | + | chr3.4:12570827-12570846 | None:intergenic | 35.0% | |
| ATGGCAATTGTGAAATGGTA+TGG | - | chr3.4:12569346-12569365 | MS.gene85486:CDS | 35.0% | |
| CAAATATGACAGAAAATGCC+AGG | + | chr3.4:12569779-12569798 | None:intergenic | 35.0% | |
| CAACACACACACAAATACTA+GGG | + | chr3.4:12569063-12569082 | None:intergenic | 35.0% | |
| CACAAATCTGTCATAAACTC+AGG | + | chr3.4:12570002-12570021 | None:intergenic | 35.0% | |
| CAGGATCAAGTATTCCAAAA+TGG | - | chr3.4:12568984-12569003 | MS.gene85486:CDS | 35.0% | |
| CTCAGGAAATAAGCTGAAAA+CGG | + | chr3.4:12569985-12570004 | None:intergenic | 35.0% | |
| CTCTCTCAAACAATATCACA+AGG | + | chr3.4:12569930-12569949 | None:intergenic | 35.0% | |
| CTTTCACCAACATTCTTTCA+AGG | - | chr3.4:12570883-12570902 | MS.gene85486:CDS | 35.0% | |
| GAAACTACATACGAAACATG+CGG | - | chr3.4:12570686-12570705 | MS.gene85486:intron | 35.0% | |
| GAAGAATGGCAATTGTGAAA+TGG | - | chr3.4:12569341-12569360 | MS.gene85486:CDS | 35.0% | |
| GAATCTATAATTTCCCGGTT+AGG | - | chr3.4:12571057-12571076 | MS.gene85486:intron | 35.0% | |
| GAATGCTTATGATATCTTGG+GGG | + | chr3.4:12569699-12569718 | None:intergenic | 35.0% | |
| GGAATGCTTATGATATCTTG+GGG | + | chr3.4:12569700-12569719 | None:intergenic | 35.0% | |
| GTACAGACAAGAAAACAGAA+TGG | - | chr3.4:12569378-12569397 | MS.gene85486:CDS | 35.0% | |
| GTATTGAGAGAGAGACAAAA+GGG | + | chr3.4:12570378-12570397 | None:intergenic | 35.0% | |
| GTCTCTCTCTCAATACTAAT+TGG | - | chr3.4:12570382-12570401 | MS.gene85486:intron | 35.0% | |
| GTGCCAAAATTCTACAAGAA+TGG | - | chr3.4:12569421-12569440 | MS.gene85486:CDS | 35.0% | |
| TCTTCTACACATTTGTCTTC+AGG | - | chr3.4:12570189-12570208 | MS.gene85486:intron | 35.0% | |
| TGTTCATGGAATGAGAAGAA+TGG | - | chr3.4:12569327-12569346 | MS.gene85486:CDS | 35.0% | |
| TTGTGAAGATGAGCATTTGA+TGG | - | chr3.4:12569297-12569316 | MS.gene85486:intron | 35.0% | |
| TTTGCATGAGAATGATTGCA+AGG | + | chr3.4:12570745-12570764 | None:intergenic | 35.0% | |
| ! | AAAGAATGTTGGTGAAAGGA+AGG | + | chr3.4:12570881-12570900 | None:intergenic | 35.0% |
| ! | AAGAATGTTGGTGAAAGGAA+GGG | + | chr3.4:12570880-12570899 | None:intergenic | 35.0% |
| ! | AGTATTGAGAGAGAGACAAA+AGG | + | chr3.4:12570379-12570398 | None:intergenic | 35.0% |
| ! | CTATTCTGAAGGAACATGTT+TGG | - | chr3.4:12569182-12569201 | MS.gene85486:intron | 35.0% |
| ! | CTTGAAAGAATGTTGGTGAA+AGG | + | chr3.4:12570885-12570904 | None:intergenic | 35.0% |
| ! | TCTTATAATGGAACTCCAAC+TGG | + | chr3.4:12571120-12571139 | None:intergenic | 35.0% |
| ! | TTCTAGTTGGTCTATTCTGA+AGG | - | chr3.4:12569171-12569190 | MS.gene85486:intron | 35.0% |
| ! | TTTTCAACCTTCATTGTGGA+AGG | + | chr3.4:12570580-12570599 | None:intergenic | 35.0% |
| !!! | CATTTTGGAATACTTGATCC+TGG | + | chr3.4:12568986-12569005 | None:intergenic | 35.0% |
| !!! | GTGTGTTGTTTTTGGAATGT+TGG | - | chr3.4:12569075-12569094 | MS.gene85486:CDS | 35.0% |
| !!! | TGCCTCATCATTTTCTAGTT+AGG | - | chr3.4:12569104-12569123 | MS.gene85486:CDS | 35.0% |
| !!! | TGGACTATCTGGTTTTTCTT+TGG | - | chr3.4:12570243-12570262 | MS.gene85486:intron | 35.0% |
| AATGCCAGGAATGACAGAAA+TGG | + | chr3.4:12569765-12569784 | None:intergenic | 40.0% | |
| ACCAACTAGAACATGAAGAC+AGG | + | chr3.4:12569162-12569181 | None:intergenic | 40.0% | |
| ACGAAACATGCGGACAATAT+TGG | - | chr3.4:12570696-12570715 | MS.gene85486:intron | 40.0% | |
| AGAACATGGTTGGAATCATG+TGG | - | chr3.4:12569258-12569277 | MS.gene85486:intron | 40.0% | |
| AGCAATGCATATTATCCACC+AGG | - | chr3.4:12571145-12571164 | MS.gene85486:CDS | 40.0% | |
| ATAATTTCCCGGTTAGGATG+CGG | - | chr3.4:12571063-12571082 | MS.gene85486:intron | 40.0% | |
| ATCACACTCTCAGACAAACA+TGG | - | chr3.4:12569233-12569252 | MS.gene85486:intron | 40.0% | |
| ATGGAAACAACATACTTGGG+CGG | + | chr3.4:12569746-12569765 | None:intergenic | 40.0% | |
| CAATCCATACATGTCCTAGA+GGG | + | chr3.4:12569878-12569897 | None:intergenic | 40.0% | |
| CAGACAAGAAAACAGAATGG+AGG | - | chr3.4:12569381-12569400 | MS.gene85486:CDS | 40.0% | |
| CATTCCAAATGAACTTGCCA+CGG | - | chr3.4:12569714-12569733 | MS.gene85486:intron | 40.0% | |
| CCAACCTGGCTTACTTATTT+GGG | - | chr3.4:12570273-12570292 | MS.gene85486:intron | 40.0% | |
| CTCACGAGCGTAAAATGATA+TGG | + | chr3.4:12569035-12569054 | None:intergenic | 40.0% | |
| GCTTTAACGTCTTGTACTCT+TGG | - | chr3.4:12570298-12570317 | MS.gene85486:intron | 40.0% | |
| GGAGGATACACAATAATCCT+TGG | + | chr3.4:12569857-12569876 | None:intergenic | 40.0% | |
| GGATTTACCTTCCACAATGA+AGG | - | chr3.4:12570570-12570589 | MS.gene85486:intron | 40.0% | |
| GTGACATACATCTTGACTGA+TGG | - | chr3.4:12570223-12570242 | MS.gene85486:intron | 40.0% | |
| GTTTCCATTTCTGTCATTCC+TGG | - | chr3.4:12569758-12569777 | MS.gene85486:CDS | 40.0% | |
| TCCAACCTGGCTTACTTATT+TGG | - | chr3.4:12570272-12570291 | MS.gene85486:intron | 40.0% | |
| TCCTGTCTTCATGTTCTAGT+TGG | - | chr3.4:12569158-12569177 | MS.gene85486:intron | 40.0% | |
| TGTGAACAACAGTAGTGGTA+TGG | + | chr3.4:12570822-12570841 | None:intergenic | 40.0% | |
| TTATTGTGTATCCTCCCTCT+AGG | - | chr3.4:12569861-12569880 | MS.gene85486:CDS | 40.0% | |
| ! | AGATACTAATGGTGTTGAGC+TGG | + | chr3.4:12571203-12571222 | None:intergenic | 40.0% |
| ! | CAGTAGTGGTATGGTTGATA+TGG | + | chr3.4:12570813-12570832 | None:intergenic | 40.0% |
| ! | GATCGTTTTATGACCGTTGA+TGG | + | chr3.4:12569140-12569159 | None:intergenic | 40.0% |
| !! | ATCTTGACTGATGGACTATC+TGG | - | chr3.4:12570232-12570251 | MS.gene85486:intron | 40.0% |
| CCAATCCATACATGTCCTAG+AGG | + | chr3.4:12569879-12569898 | None:intergenic | 45.0% | |
| CCCAAATAAGTAAGCCAGGT+TGG | + | chr3.4:12570276-12570295 | None:intergenic | 45.0% | |
| GCATCCCAAATAAGTAAGCC+AGG | + | chr3.4:12570280-12570299 | None:intergenic | 45.0% | |
| TGGTTTAGTGTACGCAGTAG+TGG | - | chr3.4:12570402-12570421 | MS.gene85486:intron | 45.0% | |
| TTTGCAACCAGTGAGTTTCG+CGG | - | chr3.4:12571168-12571187 | MS.gene85486:CDS | 45.0% | |
| ! | AAACTCACTGGTTGCAAACC+TGG | + | chr3.4:12571166-12571185 | None:intergenic | 45.0% |
| ! | ATGGTTGATATGGAAGCAGC+TGG | + | chr3.4:12570803-12570822 | None:intergenic | 45.0% |
| ! | ATTTTCAGCCGCATCCTAAC+CGG | + | chr3.4:12571074-12571093 | None:intergenic | 45.0% |
| ! | TCTTTGGAAGTTCTCCAACC+TGG | - | chr3.4:12570259-12570278 | MS.gene85486:intron | 45.0% |
| ! | TGATGAAAAGTGCAGCCAGT+TGG | - | chr3.4:12571102-12571121 | MS.gene85486:CDS | 45.0% |
| ! | TTGATGGCACAAGCTGTTCA+TGG | - | chr3.4:12569313-12569332 | MS.gene85486:CDS | 45.0% |
| !! | CCTCTAGGACATGTATGGAT+TGG | - | chr3.4:12569876-12569895 | MS.gene85486:CDS | 45.0% |
| ACAACATACTTGGGCGGAGA+CGG | + | chr3.4:12569740-12569759 | None:intergenic | 50.0% | |
| CTACACAGCCGTTTAGACGA+AGG | + | chr3.4:12569478-12569497 | None:intergenic | 50.0% | |
| TCCATACATGTCCTAGAGGG+AGG | + | chr3.4:12569875-12569894 | None:intergenic | 50.0% | |
| ! | TTTTCAGCCGCATCCTAACC+GGG | + | chr3.4:12571073-12571092 | None:intergenic | 50.0% |
| !! | TCCTCCCTCTAGGACATGTA+TGG | - | chr3.4:12569871-12569890 | MS.gene85486:CDS | 50.0% |
| ACGGCCGTGGCAAGTTCATT+TGG | + | chr3.4:12569721-12569740 | None:intergenic | 55.0% | |
| TCTGATGCCGCGAAACTCAC+TGG | + | chr3.4:12571178-12571197 | None:intergenic | 55.0% | |
| ! | CTCACTGGTTGCAAACCTGG+TGG | + | chr3.4:12571163-12571182 | None:intergenic | 55.0% |
| TACTTGGGCGGAGACGGCCG+TGG | + | chr3.4:12569734-12569753 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 12568977 | 12571228 | 12568977 | ID=MS.gene85486 |
| chr3.4 | mRNA | 12568977 | 12571228 | 12568977 | ID=MS.gene85486.t1;Parent=MS.gene85486 |
| chr3.4 | exon | 12571080 | 12571228 | 12571080 | ID=MS.gene85486.t1.exon1;Parent=MS.gene85486.t1 |
| chr3.4 | CDS | 12571080 | 12571228 | 12571080 | ID=cds.MS.gene85486.t1;Parent=MS.gene85486.t1 |
| chr3.4 | exon | 12570828 | 12570986 | 12570828 | ID=MS.gene85486.t1.exon2;Parent=MS.gene85486.t1 |
| chr3.4 | CDS | 12570828 | 12570986 | 12570828 | ID=cds.MS.gene85486.t1;Parent=MS.gene85486.t1 |
| chr3.4 | exon | 12570455 | 12570548 | 12570455 | ID=MS.gene85486.t1.exon3;Parent=MS.gene85486.t1 |
| chr3.4 | CDS | 12570455 | 12570548 | 12570455 | ID=cds.MS.gene85486.t1;Parent=MS.gene85486.t1 |
| chr3.4 | exon | 12569716 | 12569994 | 12569716 | ID=MS.gene85486.t1.exon4;Parent=MS.gene85486.t1 |
| chr3.4 | CDS | 12569716 | 12569994 | 12569716 | ID=cds.MS.gene85486.t1;Parent=MS.gene85486.t1 |
| chr3.4 | exon | 12569301 | 12569534 | 12569301 | ID=MS.gene85486.t1.exon5;Parent=MS.gene85486.t1 |
| chr3.4 | CDS | 12569301 | 12569534 | 12569301 | ID=cds.MS.gene85486.t1;Parent=MS.gene85486.t1 |
| chr3.4 | exon | 12568977 | 12569126 | 12568977 | ID=MS.gene85486.t1.exon6;Parent=MS.gene85486.t1 |
| chr3.4 | CDS | 12568977 | 12569126 | 12568977 | ID=cds.MS.gene85486.t1;Parent=MS.gene85486.t1 |
| Gene Sequence |
| Protein sequence |
