AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85600.t1 MTR_1g076710 99.412 340 2 0 1 340 1 340 0.0 685
MS.gene85600.t1 MTR_6g061670 53.216 342 113 13 1 325 1 312 1.12e-89 271
MS.gene85600.t1 MTR_6g061670 53.353 343 116 13 1 325 1 317 1.31e-89 271
MS.gene85600.t1 MTR_7g074935 49.107 336 124 11 1 310 1 315 2.65e-76 238
MS.gene85600.t1 MTR_4g101990 51.799 278 90 8 17 267 17 277 7.38e-63 203
MS.gene85600.t1 MTR_8g036160 41.096 365 133 9 1 310 1 338 7.09e-60 196
MS.gene85600.t1 MTR_1g061530 39.871 311 145 11 49 340 65 352 5.06e-50 171
MS.gene85600.t1 MTR_5g011680 42.254 284 121 9 14 264 3 276 2.25e-46 159
MS.gene85600.t1 MTR_8g031100 42.578 256 120 8 49 301 89 320 2.47e-43 152
MS.gene85600.t1 MTR_5g010330 43.363 226 104 7 37 261 59 261 1.87e-42 150
MS.gene85600.t1 MTR_7g077120 41.026 234 116 4 48 278 88 302 1.97e-42 150
MS.gene85600.t1 MTR_6g060670 42.534 221 95 5 46 266 117 305 5.88e-40 143
MS.gene85600.t1 MTR_5g011620 42.222 270 119 10 14 271 3 247 2.58e-38 145
MS.gene85600.t1 MTR_8g098390 39.035 228 121 5 48 274 96 306 6.49e-36 133
MS.gene85600.t1 MTR_4g098460 44.022 184 73 5 76 249 33 196 9.14e-32 120
MS.gene85600.t1 MTR_4g055803 40.865 208 93 7 48 248 59 243 1.19e-30 120
MS.gene85600.t1 MTR_5g011610 48.684 152 66 4 132 277 51 196 1.22e-30 119
MS.gene85600.t1 MTR_5g011610 53.465 101 43 2 126 225 204 301 4.31e-21 92.8
MS.gene85600.t1 MTR_4g055833 39.024 205 101 5 48 248 56 240 3.07e-30 118
MS.gene85600.t1 MTR_4g098460 42.857 189 73 6 76 249 33 201 2.76e-29 114
MS.gene85600.t1 MTR_1g038960 40.196 204 97 5 47 248 83 263 1.25e-27 110
MS.gene85600.t1 MTR_1g079780 50.427 117 53 3 134 248 109 222 1.39e-27 110
MS.gene85600.t1 MTR_7g116320 53.719 121 52 2 130 249 139 256 1.76e-27 110
MS.gene85600.t1 MTR_4g055813 49.254 134 60 3 117 248 6 133 2.41e-27 108
MS.gene85600.t1 MTR_7g116320 52.991 117 51 2 130 245 139 252 1.52e-25 103
MS.gene85600.t1 MTR_5g014360 37.379 206 95 7 52 248 123 303 1.12e-24 103
MS.gene85600.t1 MTR_3g100470 41.463 123 69 3 134 253 101 223 1.37e-23 99.0
MS.gene85600.t1 MTR_5g013390 33.636 220 116 7 47 260 79 274 7.17e-21 92.0
MS.gene85600.t1 MTR_4g055705 42.188 128 70 2 124 247 127 254 2.28e-20 90.1
MS.gene85600.t1 MTR_1g038990 34.314 204 92 6 47 248 80 243 1.88e-19 87.8
MS.gene85600.t1 MTR_3g116100 36.000 175 100 5 89 255 91 261 8.46e-19 86.3
MS.gene85600.t1 MTR_5g091630 38.172 186 89 6 69 249 23 187 1.03e-18 84.7
MS.gene85600.t1 MTR_5g041430 43.548 124 67 3 126 247 103 225 2.84e-18 84.3
MS.gene85600.t1 MTR_3g068035 43.966 116 61 2 134 248 106 218 1.45e-17 82.4
MS.gene85600.t1 MTR_5g066020 36.552 145 83 6 126 263 72 214 2.56e-17 80.9
MS.gene85600.t1 MTR_3g023560 38.843 121 67 2 132 248 60 177 3.76e-17 80.5
MS.gene85600.t1 MTR_5g011700 45.283 106 53 2 145 248 10 112 1.25e-16 77.4
MS.gene85600.t1 MTR_5g011520 37.654 162 81 4 88 248 97 239 3.30e-16 78.6
MS.gene85600.t1 MTR_7g080980 46.610 118 55 3 134 248 84 196 3.51e-16 77.8
MS.gene85600.t1 MTR_4g098450 44.068 118 58 3 134 248 103 215 1.36e-15 76.6
MS.gene85600.t1 MTR_1g044155 40.171 117 66 2 133 248 152 265 1.42e-15 77.0
MS.gene85600.t1 MTR_8g036060 37.736 159 79 4 91 248 86 225 1.58e-15 76.6
MS.gene85600.t1 MTR_5g080580 42.241 116 63 2 134 248 116 228 1.22e-14 74.3
MS.gene85600.t1 MTR_1g073860 38.793 116 67 2 134 248 121 233 9.37e-14 71.6
MS.gene85600.t1 MTR_1g079810 40.517 116 65 2 134 248 101 213 4.08e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85600.t1 AT4G25320 67.925 212 58 5 48 256 85 289 1.86e-84 261
MS.gene85600.t1 AT5G62260 64.545 220 64 7 49 261 76 288 1.63e-83 259
MS.gene85600.t1 AT5G62260 64.545 220 64 7 49 261 76 288 1.63e-83 259
MS.gene85600.t1 AT5G62260 62.150 214 67 7 49 255 76 282 4.34e-77 238
MS.gene85600.t1 AT4G12080 58.051 236 73 7 48 271 88 309 1.57e-75 236
MS.gene85600.t1 AT5G51590 59.016 244 63 6 34 251 64 296 2.98e-71 228
MS.gene85600.t1 AT4G22770 56.195 226 80 7 48 267 71 283 1.28e-58 192
MS.gene85600.t1 AT4G22770 56.195 226 80 7 48 267 71 283 1.28e-58 192
MS.gene85600.t1 AT4G00200 53.817 262 91 8 15 265 14 256 1.65e-56 186
MS.gene85600.t1 AT4G00200 53.817 262 91 8 15 265 14 256 1.65e-56 186
MS.gene85600.t1 AT2G33620 53.589 209 67 6 48 250 96 280 1.14e-52 177
MS.gene85600.t1 AT2G33620 53.589 209 67 6 48 250 96 280 1.14e-52 177
MS.gene85600.t1 AT2G33620 53.589 209 67 6 48 250 96 280 1.14e-52 177
MS.gene85600.t1 AT2G33620 53.589 209 67 6 48 250 96 280 1.14e-52 177
MS.gene85600.t1 AT2G45850 37.544 285 149 5 7 288 56 314 7.89e-45 157
MS.gene85600.t1 AT2G45850 37.544 285 149 5 7 288 56 314 7.89e-45 157
MS.gene85600.t1 AT1G63470 45.933 209 90 5 48 251 104 294 5.45e-44 155
MS.gene85600.t1 AT2G45850 40.000 240 118 4 7 243 56 272 9.26e-41 144
MS.gene85600.t1 AT4G17950 37.868 272 112 9 48 292 130 371 2.23e-39 144
MS.gene85600.t1 AT3G61310 46.377 207 86 6 45 249 97 280 2.60e-39 142
MS.gene85600.t1 AT5G46640 43.119 218 92 5 45 249 98 296 1.98e-37 138
MS.gene85600.t1 AT1G63480 40.385 208 92 6 48 251 98 277 8.19e-35 130
MS.gene85600.t1 AT1G63480 40.385 208 92 6 48 251 98 277 8.19e-35 130
MS.gene85600.t1 AT1G63480 40.385 208 92 6 48 251 92 271 9.18e-35 130
MS.gene85600.t1 AT1G63480 40.385 208 92 6 48 251 92 271 9.18e-35 130
MS.gene85600.t1 AT1G63480 40.385 208 92 6 48 251 92 271 9.18e-35 130
MS.gene85600.t1 AT1G63480 40.385 208 92 6 48 251 92 271 9.18e-35 130
MS.gene85600.t1 AT1G63480 40.385 208 92 6 48 251 92 271 9.18e-35 130
MS.gene85600.t1 AT3G04590 39.207 227 108 6 30 248 79 283 9.04e-33 124
MS.gene85600.t1 AT3G04590 39.207 227 108 6 30 248 79 283 5.63e-32 124
MS.gene85600.t1 AT2G36560 43.704 135 70 4 131 262 102 233 6.18e-24 102
MS.gene85600.t1 AT5G49700 37.778 135 78 4 134 262 83 217 2.84e-20 89.4
MS.gene85600.t1 AT2G42940 38.983 177 79 7 76 249 43 193 1.03e-18 84.7
MS.gene85600.t1 AT1G14490 37.500 144 83 5 126 262 41 184 1.42e-17 80.9
MS.gene85600.t1 AT1G14490 37.500 144 83 5 126 262 22 165 1.45e-17 80.5
MS.gene85600.t1 AT3G60870 40.517 116 63 3 134 248 86 196 3.68e-17 80.5
MS.gene85600.t1 AT4G14465 43.103 116 62 2 134 248 94 206 4.26e-16 77.8
MS.gene85600.t1 AT2G35270 39.130 161 74 5 91 248 78 217 9.07e-16 77.0
MS.gene85600.t1 AT3G55560 41.026 117 66 2 134 249 115 229 1.89e-14 73.6
MS.gene85600.t1 AT1G76500 35.200 125 68 3 134 248 99 220 1.59e-13 70.5
MS.gene85600.t1 AT4G17800 41.228 114 63 2 136 248 111 221 1.77e-13 70.5
MS.gene85600.t1 AT3G04570 38.710 124 64 3 134 248 107 227 2.29e-12 67.4
MS.gene85600.t1 AT5G28590 37.398 123 46 3 130 248 26 121 2.32e-12 65.9
MS.gene85600.t1 AT4G12050 40.171 117 65 3 134 248 145 258 9.11e-12 65.9
MS.gene85600.t1 AT4G22810 32.716 162 86 5 91 248 105 247 1.24e-11 65.1
MS.gene85600.t1 AT2G45430 34.969 163 82 5 91 248 89 232 1.66e-11 64.7
MS.gene85600.t1 AT4G35390 41.176 119 62 4 134 248 90 204 1.72e-11 64.7

Find 93 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAAGAAAGAGAGAATTT+TGG 0.289936 1.3:+55195475 MS.gene85600:CDS
CTTCGTCAATCGACTTCTTC+AGG 0.300773 1.3:+55198591 MS.gene85600:CDS
CCACCCAATACTCGGCCATC+TGG 0.308208 1.3:-55199000 None:intergenic
TCCATTCTCAGTTGGCATAA+AGG 0.318075 1.3:-55198932 None:intergenic
AACGGTGCCGGTGTCGTTGC+CGG 0.338330 1.3:+55195585 MS.gene85600:CDS
GGCCCAGATGGCCGAGTATT+GGG 0.346491 1.3:+55198997 MS.gene85600:CDS
TTTGAGATTCTTTCCTTGTC+TGG 0.357599 1.3:+55198907 MS.gene85600:CDS
AATGCAGCAGGTGTCATAAA+AGG 0.358990 1.3:-55199308 None:intergenic
TATGTGCTTACAGTGAATTC+TGG 0.363275 1.3:+55198308 MS.gene85600:CDS
TCCTTTATGCCAACTGAGAA+TGG 0.367271 1.3:+55198931 MS.gene85600:CDS
TGGTGGGATGAGTGTCTCTT+TGG 0.369450 1.3:+55198972 MS.gene85600:CDS
AGGCCCAGATGGCCGAGTAT+TGG 0.385737 1.3:+55198996 MS.gene85600:CDS
CTTGTAATTCCATTCTCAGT+TGG 0.403549 1.3:-55198940 None:intergenic
GAGAGTTCTCAGCTTGGAAA+AGG 0.409824 1.3:+55195728 MS.gene85600:CDS
CCATCTGGACCATACTTCCT+TGG 0.412247 1.3:-55195637 None:intergenic
GTCTCTTTGGCAGGCCCAGA+TGG 0.415568 1.3:+55198985 MS.gene85600:CDS
CAGAGATCCTTTACCTGAAA+AGG 0.415604 1.3:+55199400 MS.gene85600:CDS
GAAAGCGCAGTCACAGCTCC+AGG 0.416976 1.3:-55195670 None:intergenic
GCTGGTTTGCTTATAGCTTC+CGG 0.419761 1.3:+55199030 MS.gene85600:CDS
TCCAAGTTGTTATCAATCCT+TGG 0.429223 1.3:-55195550 None:intergenic
TTCTTCTTCAAAGCTGTCTC+CGG 0.437794 1.3:-55195604 None:intergenic
AACGGAATCGACGATGAAAT+CGG 0.441018 1.3:-55195700 None:intergenic
GATTTCTTCATAGATTCAAC+AGG 0.446009 1.3:-55195763 None:intergenic
TTCGTCAATCGACTTCTTCA+GGG 0.447507 1.3:+55198592 MS.gene85600:CDS
AGGGGAAGACCAAGGAAGTA+TGG 0.459354 1.3:+55195628 MS.gene85600:CDS
TGCATTCATTAGGTCGTTGT+GGG 0.460179 1.3:+55199143 MS.gene85600:intron
GGAATTACAAGAAGCAGATC+TGG 0.463594 1.3:+55198952 MS.gene85600:CDS
TATTGCACGTGATCCTTGTT+GGG 0.468137 1.3:-55198529 None:intergenic
CCAGGAGCAGGCTTACCATC+TGG 0.469400 1.3:-55195652 None:intergenic
TTCTCTTCTTGAAATGCAGC+AGG 0.470365 1.3:-55199320 None:intergenic
ATATTGCACGTGATCCTTGT+TGG 0.472595 1.3:-55198530 None:intergenic
CACCCAATACTCGGCCATCT+GGG 0.474541 1.3:-55198999 None:intergenic
GCAGTCACAGCTCCAGGAGC+AGG 0.477303 1.3:-55195664 None:intergenic
GTGTCTAATGAAGTAAGTTT+CGG 0.481593 1.3:+55199275 MS.gene85600:CDS
GTATTGGGTGGTGGACTCGC+TGG 0.482204 1.3:+55199012 MS.gene85600:CDS
CGACACCGGCACCGTTGCCA+TGG 0.488569 1.3:-55195578 None:intergenic
GGGATGAGTGTCTCTTTGGC+AGG 0.488739 1.3:+55198976 MS.gene85600:CDS
TAAACTCACCTCATACGTTA+AGG 0.491146 1.3:-55198619 None:intergenic
TCATCGTCGATTCCGTTGAC+TGG 0.493414 1.3:+55195706 MS.gene85600:CDS
TTTGGTGCTGTGAATGTAGT+GGG 0.499641 1.3:+55195493 MS.gene85600:CDS
CCAGATGGTAAGCCTGCTCC+TGG 0.499803 1.3:+55195652 MS.gene85600:CDS
CGAGTCCACCACCCAATACT+CGG 0.505760 1.3:-55199008 None:intergenic
AGCAAAACAGCAAGAAGCAG+AGG 0.510263 1.3:+55199192 MS.gene85600:CDS
AGAGTTTACCTGCACGGGAC+CGG 0.519678 1.3:-55199049 None:intergenic
ATCTCTGTCTTCAGCAGATG+AGG 0.527702 1.3:-55199384 None:intergenic
ACAACAATGCTCAAGACTCT+AGG 0.534120 1.3:+55199357 MS.gene85600:CDS
AGAGTTCTCAGCTTGGAAAA+GGG 0.534719 1.3:+55195729 MS.gene85600:CDS
TATAGCTTCCGGTCCCGTGC+AGG 0.538508 1.3:+55199041 MS.gene85600:CDS
ATATGTATTCTCTCTGCCAC+TGG 0.538679 1.3:+55198549 MS.gene85600:CDS
GATGGCCGAGTATTGGGTGG+TGG 0.550417 1.3:+55199003 MS.gene85600:CDS
GTGCATTCATTAGGTCGTTG+TGG 0.552620 1.3:+55199142 MS.gene85600:intron
TCAGCTTGGAAAAGGGGTAG+AGG 0.552867 1.3:+55195736 MS.gene85600:CDS
GAGTTCTCAGCTTGGAAAAG+GGG 0.553297 1.3:+55195730 MS.gene85600:CDS
TCCAAGGATTGATAACAACT+TGG 0.557972 1.3:+55195549 MS.gene85600:CDS
GCTGTCTCCGGCAACGACAC+CGG 0.564357 1.3:-55195592 None:intergenic
ACTCCAGAGTTTACCTGCAC+GGG 0.565877 1.3:-55199054 None:intergenic
TGATGATTAACATGCGGAGG+AGG 0.567490 1.3:-55199251 None:intergenic
AGACAGCTTTGAAGAAGAAG+AGG 0.569402 1.3:+55195608 MS.gene85600:CDS
TGAGCTTTCAAGCTGCTCCA+AGG 0.570496 1.3:+55195533 MS.gene85600:CDS
GACAGCTTTGAAGAAGAAGA+GGG 0.570605 1.3:+55195609 MS.gene85600:CDS
AAGCACATAAGCTGTGAAGT+TGG 0.573504 1.3:-55198294 None:intergenic
CCAAGGAAGTATGGTCCAGA+TGG 0.574476 1.3:+55195637 MS.gene85600:CDS
GAGGGAATTGCATACTCAGT+AGG 0.575333 1.3:+55198269 MS.gene85600:CDS
GTAGGTGGAGGTGTAAGTGA+GGG 0.576701 1.3:+55198251 MS.gene85600:CDS
TACTCCAGAGTTTACCTGCA+CGG 0.581270 1.3:-55199055 None:intergenic
TGTAGGTGGAGGTGTAAGTG+AGG 0.583447 1.3:+55198250 MS.gene85600:CDS
TAAATAATACCTTGCACAGG+TGG 0.587655 1.3:-55195811 None:intergenic
CAGCTTGGAAAAGGGGTAGA+GGG 0.590560 1.3:+55195737 MS.gene85600:CDS
TTTGAAAGTCCACCTGTGCA+AGG 0.595210 1.3:+55195802 MS.gene85600:CDS
GCTGAGAACTCTCCAGTCAA+CGG 0.597272 1.3:-55195718 None:intergenic
GGAGCAGCTTGAAAGCTCAC+AGG 0.597686 1.3:-55195529 None:intergenic
AAACAGCAAGAAGCAGAGGG+TGG 0.602793 1.3:+55199196 MS.gene85600:CDS
GAATGTAGTGGGTGGTAATG+AGG 0.604474 1.3:+55195504 MS.gene85600:CDS
TGGCATAAAGGAACCAGACA+AGG 0.611075 1.3:-55198920 None:intergenic
TCGTCAATCGACTTCTTCAG+GGG 0.612115 1.3:+55198593 MS.gene85600:CDS
AAAATTATGTCCTCCCAACA+AGG 0.612526 1.3:+55198516 MS.gene85600:CDS
TGACTGGAGAGTTCTCAGCT+TGG 0.612765 1.3:+55195722 MS.gene85600:CDS
TGCACGTGATCCTTGTTGGG+AGG 0.616462 1.3:-55198526 None:intergenic
CTATAAATAATACCTTGCAC+AGG 0.617295 1.3:-55195814 None:intergenic
TCTAATGAAGTAAGTTTCGG+TGG 0.620980 1.3:+55199278 MS.gene85600:CDS
ATTACAAGAAGCAGATCTGG+TGG 0.630094 1.3:+55198955 MS.gene85600:CDS
GCAAAACAGCAAGAAGCAGA+GGG 0.637562 1.3:+55199193 MS.gene85600:CDS
AACATTTGAAATTGTGCCAG+TGG 0.637698 1.3:-55198565 None:intergenic
CCAGATGGCCGAGTATTGGG+TGG 0.641351 1.3:+55199000 MS.gene85600:CDS
GGTGCTGTGAATGTAGTGGG+TGG 0.656148 1.3:+55195496 MS.gene85600:CDS
ATCGACGATGAAATCGGCAT+AGG 0.666533 1.3:-55195694 None:intergenic
TTACAAGAAGCAGATCTGGT+GGG 0.675023 1.3:+55198956 MS.gene85600:CDS
GACACATGATGATTAACATG+CGG 0.679694 1.3:-55199257 None:intergenic
AGAAGAAGAGGGGAAGACCA+AGG 0.680559 1.3:+55195620 MS.gene85600:CDS
ACATGATGATTAACATGCGG+AGG 0.682437 1.3:-55199254 None:intergenic
GCTTACAGTGAATTCTGGCG+AGG 0.694276 1.3:+55198313 MS.gene85600:CDS
ACAGCTTTGAAGAAGAAGAG+GGG 0.698390 1.3:+55195610 MS.gene85600:CDS
CGTCAATCGACTTCTTCAGG+GGG 0.699414 1.3:+55198594 MS.gene85600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTTTTATATTTAAT+GGG + chr1.3:55198082-55198101 MS.gene85600:intron 0.0%
!!! TATTTTATTTTTATATTTAA+TGG + chr1.3:55198081-55198100 MS.gene85600:intron 0.0%
!! ATGAAAATTATAAGAAAAAA+AGG - chr1.3:55195899-55195918 None:intergenic 10.0%
!! TTAAGTATTATGTAAATTAT+TGG - chr1.3:55197041-55197060 None:intergenic 10.0%
!! ACCATATAAAATATGATAAA+AGG - chr1.3:55198353-55198372 None:intergenic 15.0%
!! ATAAAATATGATAAAAGGAA+AGG - chr1.3:55198348-55198367 None:intergenic 15.0%
!! ATTAAGAACAAGTTAAAATT+TGG - chr1.3:55196558-55196577 None:intergenic 15.0%
!! GAATGTTAAAAAAAAAACAA+AGG - chr1.3:55196868-55196887 None:intergenic 15.0%
!!! TAGTTTTTGAATTTCATTTT+TGG + chr1.3:55198431-55198450 MS.gene85600:intron 15.0%
!!! TCCTTTTATCATATTTTATA+TGG + chr1.3:55198349-55198368 MS.gene85600:intron 15.0%
!!! TTATCATATTTTATATGGTA+TGG + chr1.3:55198354-55198373 MS.gene85600:intron 15.0%
!!! TTTATTTTTGTGAACTATAA+AGG + chr1.3:55198139-55198158 MS.gene85600:intron 15.0%
!! AACTACATAAAATACGTATA+AGG - chr1.3:55198231-55198250 None:intergenic 20.0%
!! TAATAACTATGCCAAAAAAA+TGG - chr1.3:55196901-55196920 None:intergenic 20.0%
!! TATGTTGAAAAAATAACAAG+AGG - chr1.3:55196045-55196064 None:intergenic 20.0%
!! TCTTCTTATAAAGGAAAATA+AGG - chr1.3:55196326-55196345 None:intergenic 20.0%
!! TGTGATAGAGTTTATATTTA+GGG + chr1.3:55196172-55196191 MS.gene85600:intron 20.0%
!! TTGTGATAGAGTTTATATTT+AGG + chr1.3:55196171-55196190 MS.gene85600:intron 20.0%
!!! ATTTTTTTGTCTTAATCATC+GGG - chr1.3:55196615-55196634 None:intergenic 20.0%
!!! CATTTTTTTGTCTTAATCAT+CGG - chr1.3:55196616-55196635 None:intergenic 20.0%
!!! CTTTTATATAATGAATGAAC+TGG + chr1.3:55198108-55198127 MS.gene85600:intron 20.0%
!!! GTAAAGAATCTTCTAAAATT+AGG + chr1.3:55197783-55197802 MS.gene85600:intron 20.0%
!!! TACTTTTCTTCTTCTTATAA+AGG - chr1.3:55196335-55196354 None:intergenic 20.0%
!!! TTTTAACTTGTTCTTAATCA+TGG + chr1.3:55196560-55196579 MS.gene85600:intron 20.0%
!!! TTTTTGAGTTCTAATTGTTA+TGG + chr1.3:55196095-55196114 MS.gene85600:intron 20.0%
! AAATGGTTAGAGTAAATGAA+GGG + chr1.3:55196374-55196393 MS.gene85600:intron 25.0%
! AACACAATTATTTATGGACT+CGG + chr1.3:55197631-55197650 MS.gene85600:intron 25.0%
! AGAGATTTATAGAACGTATT+AGG + chr1.3:55196773-55196792 MS.gene85600:intron 25.0%
! AGTATTGCATTATATGACAA+TGG + chr1.3:55196351-55196370 MS.gene85600:intron 25.0%
! AGTGGAATTCATTATTATTC+AGG + chr1.3:55195983-55196002 MS.gene85600:intron 25.0%
! ATGTTGCAAGATAAAGAAAA+GGG - chr1.3:55197407-55197426 None:intergenic 25.0%
! ATTAAATACATGAATTGAGC+TGG + chr1.3:55197876-55197895 MS.gene85600:intron 25.0%
! CAAAGATCATTACTTAATAC+TGG + chr1.3:55197372-55197391 MS.gene85600:intron 25.0%
! CTAAAAGTTTCAGAAAAATG+TGG - chr1.3:55197247-55197266 None:intergenic 25.0%
! CTAAAATTAGGACCATAATA+GGG + chr1.3:55197795-55197814 MS.gene85600:intron 25.0%
! GGTTCTTTAATTGTTTAAGA+GGG + chr1.3:55197552-55197571 MS.gene85600:intron 25.0%
! GTATGGAACACAATTATTTA+TGG + chr1.3:55197625-55197644 MS.gene85600:intron 25.0%
! GTGATAGAGTTTATATTTAG+GGG + chr1.3:55196173-55196192 MS.gene85600:intron 25.0%
! TAATTGTGTTCCATACTTTA+CGG - chr1.3:55197621-55197640 None:intergenic 25.0%
! TCTTCTTGTAAAAAATAGAG+TGG + chr1.3:55196639-55196658 MS.gene85600:intron 25.0%
! TGATAGAGTTTATATTTAGG+GGG + chr1.3:55196174-55196193 MS.gene85600:intron 25.0%
! TTCAGAAAAATGTGGTATTA+GGG - chr1.3:55197239-55197258 None:intergenic 25.0%
! TTTCAGAAAAATGTGGTATT+AGG - chr1.3:55197240-55197259 None:intergenic 25.0%
! TTTCTATTATTGAAGTCTCT+TGG + chr1.3:55197968-55197987 MS.gene85600:intron 25.0%
!! CATTTGTTTCTCTATCATAT+TGG + chr1.3:55198678-55198697 MS.gene85600:intron 25.0%
!! GTAATAAAGAAATTCTAGAG+AGG - chr1.3:55198170-55198189 None:intergenic 25.0%
!! TACGTATTTTATGTAGTTGT+AGG + chr1.3:55198233-55198252 MS.gene85600:intron 25.0%
!! TCTAAAATTAGGACCATAAT+AGG + chr1.3:55197794-55197813 MS.gene85600:intron 25.0%
!! TCTTTGAAGGTTATGAATTA+AGG + chr1.3:55197586-55197605 MS.gene85600:intron 25.0%
!!! GGTTTTATTCGTCTAATATT+GGG - chr1.3:55197207-55197226 None:intergenic 25.0%
!!! TCCATCAGTATTTTAATCAA+AGG + chr1.3:55196680-55196699 MS.gene85600:intron 25.0%
!!! TGTTTGTTTTACGAGTTTTT+TGG - chr1.3:55197129-55197148 None:intergenic 25.0%
!!! TTGAAGTAAATTATTGACTC+TGG + chr1.3:55198404-55198423 MS.gene85600:intron 25.0%
!!! TTTTGGTTGCATATAGTATA+AGG + chr1.3:55196737-55196756 MS.gene85600:intron 25.0%
AACAATACATGGCAGTAAAT+TGG - chr1.3:55197824-55197843 None:intergenic 30.0%
ACTATTAGACTCATTCTAGT+TGG - chr1.3:55196401-55196420 None:intergenic 30.0%
AGGTTGTATTTGTTCTGTTT+AGG + chr1.3:55196285-55196304 MS.gene85600:intron 30.0%
ATTATTAAGAGCAATCTCCT+AGG + chr1.3:55196587-55196606 MS.gene85600:intron 30.0%
ATTATTCAAACCAACCAACA+AGG - chr1.3:55196500-55196519 None:intergenic 30.0%
CATATAAACGAAGGACTTTA+TGG - chr1.3:55198712-55198731 None:intergenic 30.0%
CATATAATACAAGACAGACA+TGG - chr1.3:55198738-55198757 None:intergenic 30.0%
CATATAGTATAAGGTATGCT+TGG + chr1.3:55196746-55196765 MS.gene85600:intron 30.0%
CTATAAATAATACCTTGCAC+AGG - chr1.3:55195817-55195836 None:intergenic 30.0%
CTCTGAATATAGCATGTTTA+GGG - chr1.3:55196955-55196974 None:intergenic 30.0%
CTTTAATTGTTTAAGAGGGT+TGG + chr1.3:55197556-55197575 MS.gene85600:intron 30.0%
CTTTGTATTCAGATCTGAAA+AGG - chr1.3:55196228-55196247 None:intergenic 30.0%
GAAATGGTTAGAGTAAATGA+AGG + chr1.3:55196373-55196392 MS.gene85600:intron 30.0%
GAAGAAGCTTATGTATCATT+CGG - chr1.3:55198047-55198066 None:intergenic 30.0%
GATGTTGCAAGATAAAGAAA+AGG - chr1.3:55197408-55197427 None:intergenic 30.0%
GATTTCTTCATAGATTCAAC+AGG - chr1.3:55195766-55195785 None:intergenic 30.0%
GCATTATATGACAATGGAAA+TGG + chr1.3:55196357-55196376 MS.gene85600:intron 30.0%
GCCTTTGATTAAAATACTGA+TGG - chr1.3:55196684-55196703 None:intergenic 30.0%
GGAGTTAAGACTTTCAAATA+TGG + chr1.3:55197897-55197916 MS.gene85600:intron 30.0%
GGGTTCTTTAATTGTTTAAG+AGG + chr1.3:55197551-55197570 MS.gene85600:intron 30.0%
GGTTGTATTTGTTCTGTTTA+GGG + chr1.3:55196286-55196305 MS.gene85600:intron 30.0%
GTATAAGGAAGATCAATTGA+TGG - chr1.3:55198216-55198235 None:intergenic 30.0%
GTGTCTAATGAAGTAAGTTT+CGG + chr1.3:55199275-55199294 MS.gene85600:CDS 30.0%
TAAATGCTAAAATGAGCATG+TGG - chr1.3:55198461-55198480 None:intergenic 30.0%
TCTATATCTGAACAAGATCT+GGG + chr1.3:55197531-55197550 MS.gene85600:intron 30.0%
TCTCTGAATATAGCATGTTT+AGG - chr1.3:55196956-55196975 None:intergenic 30.0%
TGAATAATAGGCTGCAAAAT+AGG + chr1.3:55196512-55196531 MS.gene85600:intron 30.0%
TTCTATATCTGAACAAGATC+TGG + chr1.3:55197530-55197549 MS.gene85600:intron 30.0%
TTTATATGGTATGGATCAAG+TGG + chr1.3:55198363-55198382 MS.gene85600:intron 30.0%
! AAGTTTGCAGAAGAGATTTT+TGG + chr1.3:55196720-55196739 MS.gene85600:intron 30.0%
! ATGGAAGAAAGAGAGAATTT+TGG + chr1.3:55195475-55195494 MS.gene85600:CDS 30.0%
! ATTAAAGTCCCTCATTTTGT+TGG - chr1.3:55196825-55196844 None:intergenic 30.0%
! GTATTTTATGTAGTTGTAGG+TGG + chr1.3:55198236-55198255 MS.gene85600:intron 30.0%
! TAACAACTTGGATTTTTCCA+TGG + chr1.3:55195561-55195580 MS.gene85600:CDS 30.0%
! TGACTGTTACTATGTTTCTA+AGG + chr1.3:55195919-55195938 MS.gene85600:intron 30.0%
! TTGAGTTCTAATTGTTATGG+AGG + chr1.3:55196098-55196117 MS.gene85600:intron 30.0%
!! GAATTGTGTGTTGTTTAACA+TGG + chr1.3:55197451-55197470 MS.gene85600:intron 30.0%
!! TATTTTTGTGGTTGAAAGTG+AGG + chr1.3:55196265-55196284 MS.gene85600:intron 30.0%
!! TGTTGGTTGGTTTGAATAAT+AGG + chr1.3:55196500-55196519 MS.gene85600:intron 30.0%
!!! AATTTTGAGTTTCCCTTCTA+TGG + chr1.3:55198796-55198815 MS.gene85600:intron 30.0%
!!! GGGTTTTATTCGTCTAATAT+TGG - chr1.3:55197208-55197227 None:intergenic 30.0%
!!! TTTCTGAAACTTTTAGTTGC+TGG + chr1.3:55197251-55197270 MS.gene85600:intron 30.0%
AAAATTATGTCCTCCCAACA+AGG + chr1.3:55198516-55198535 MS.gene85600:CDS 35.0%
AAAGGATGAGGTAGATTTGA+AGG - chr1.3:55198009-55198028 None:intergenic 35.0%
AAATTAGGACCATAATAGGG+TGG + chr1.3:55197798-55197817 MS.gene85600:intron 35.0%
AATAGAGTGGTCTCTTAGAA+TGG + chr1.3:55196652-55196671 MS.gene85600:intron 35.0%
AGAGTTTATATTTAGGGGGT+GGG + chr1.3:55196178-55196197 MS.gene85600:intron 35.0%
AGATCTGAATACAAAGTGTG+AGG + chr1.3:55196232-55196251 MS.gene85600:intron 35.0%
ATCAATTGATGGAGAAAGAC+AGG - chr1.3:55198205-55198224 None:intergenic 35.0%
CACTATGTTGTGCATTCATT+AGG + chr1.3:55199133-55199152 MS.gene85600:intron 35.0%
CATCTTACTAATCACCTTGT+TGG + chr1.3:55196483-55196502 MS.gene85600:intron 35.0%
CCTGTAATTCCATTCAACAA+GGG - chr1.3:55198882-55198901 None:intergenic 35.0%
CCTTGTTGAATGGAATTACA+GGG + chr1.3:55198880-55198899 MS.gene85600:intron 35.0%
CTTGTAATTCCATTCTCAGT+TGG - chr1.3:55198943-55198962 None:intergenic 35.0%
CTTGTTGAATGGAATTACAG+GGG + chr1.3:55198881-55198900 MS.gene85600:intron 35.0%
GAAATTTCTGTGTGAAGAAG+AGG + chr1.3:55196798-55196817 MS.gene85600:intron 35.0%
GACACATGATGATTAACATG+CGG - chr1.3:55199260-55199279 None:intergenic 35.0%
TAAACTCACCTCATACGTTA+AGG - chr1.3:55198622-55198641 None:intergenic 35.0%
TAAATAATACCTTGCACAGG+TGG - chr1.3:55195814-55195833 None:intergenic 35.0%
TAGAGTTTATATTTAGGGGG+TGG + chr1.3:55196177-55196196 MS.gene85600:intron 35.0%
TATGTGCTTACAGTGAATTC+TGG + chr1.3:55198308-55198327 MS.gene85600:CDS 35.0%
TCACTAACTCCATACTGAAT+CGG + chr1.3:55198826-55198845 MS.gene85600:intron 35.0%
TCATTTATGCCCTTGTTGAA+TGG + chr1.3:55198870-55198889 MS.gene85600:intron 35.0%
TCCAAGTTGTTATCAATCCT+TGG - chr1.3:55195553-55195572 None:intergenic 35.0%
TCTAATGAAGTAAGTTTCGG+TGG + chr1.3:55199278-55199297 MS.gene85600:CDS 35.0%
TGAAAAGGAATCTCAGCTAA+GGG - chr1.3:55196213-55196232 None:intergenic 35.0%
TTACTAATCACCTTGTTGGT+TGG + chr1.3:55196487-55196506 MS.gene85600:intron 35.0%
! AACATTTGAAATTGTGCCAG+TGG - chr1.3:55198568-55198587 None:intergenic 35.0%
! CTACCTCATCCTTTAAAAGA+TGG + chr1.3:55198015-55198034 MS.gene85600:intron 35.0%
! CTATGATTAGAGTCCTTTTC+AGG - chr1.3:55199416-55199435 None:intergenic 35.0%
! GTGGTATTAGGGATGTTTTA+GGG - chr1.3:55197228-55197247 None:intergenic 35.0%
! TATTTATGGACTCGGTTATG+TGG + chr1.3:55197639-55197658 MS.gene85600:intron 35.0%
! TCCAAGGATTGATAACAACT+TGG + chr1.3:55195549-55195568 MS.gene85600:CDS 35.0%
! TGTGGTATTAGGGATGTTTT+AGG - chr1.3:55197229-55197248 None:intergenic 35.0%
! TTGGGAGGACATAATTTTCA+TGG - chr1.3:55198514-55198533 None:intergenic 35.0%
! TTTGAGATTCTTTCCTTGTC+TGG + chr1.3:55198907-55198926 MS.gene85600:CDS 35.0%
! TTTTATGTAGTTGTAGGTGG+AGG + chr1.3:55198239-55198258 MS.gene85600:intron 35.0%
!! CAGTTTTTGAGAAATGAGAG+TGG + chr1.3:55195965-55195984 MS.gene85600:intron 35.0%
!! GATCCATCTTTTAAAGGATG+AGG - chr1.3:55198021-55198040 None:intergenic 35.0%
!! TATGTAACACCGATTCAGTA+TGG - chr1.3:55198838-55198857 None:intergenic 35.0%
!!! CACATGTTCTGCCATTTTTT+TGG + chr1.3:55196887-55196906 MS.gene85600:intron 35.0%
!!! TTAGAGTCCTTTTCAGGTAA+AGG - chr1.3:55199410-55199429 None:intergenic 35.0%
AACGGAATCGACGATGAAAT+CGG - chr1.3:55195703-55195722 None:intergenic 40.0%
AAGCACATAAGCTGTGAAGT+TGG - chr1.3:55198297-55198316 None:intergenic 40.0%
AATGATCTTTGTCCCTTCTC+CGG - chr1.3:55197363-55197382 None:intergenic 40.0%
ACAACAATGCTCAAGACTCT+AGG + chr1.3:55199357-55199376 MS.gene85600:CDS 40.0%
ACATCCAAGTAAGACGAATG+CGG + chr1.3:55197423-55197442 MS.gene85600:intron 40.0%
ACATGATGATTAACATGCGG+AGG - chr1.3:55199257-55199276 None:intergenic 40.0%
ACATGGCTGCATATAAACGA+AGG - chr1.3:55198721-55198740 None:intergenic 40.0%
AGAAGAGGACCAACAAAATG+AGG + chr1.3:55196813-55196832 MS.gene85600:intron 40.0%
AGAGTTCTCAGCTTGGAAAA+GGG + chr1.3:55195729-55195748 MS.gene85600:CDS 40.0%
AGTTTATATTTAGGGGGTGG+GGG + chr1.3:55196180-55196199 MS.gene85600:intron 40.0%
ATATGTATTCTCTCTGCCAC+TGG + chr1.3:55198549-55198568 MS.gene85600:CDS 40.0%
ATATTGCACGTGATCCTTGT+TGG - chr1.3:55198533-55198552 None:intergenic 40.0%
ATGTATTGTTGCGATGTGTG+AGG + chr1.3:55197834-55197853 MS.gene85600:intron 40.0%
ATTACAAGAAGCAGATCTGG+TGG + chr1.3:55198955-55198974 MS.gene85600:CDS 40.0%
CAGAGATCCTTTACCTGAAA+AGG + chr1.3:55199400-55199419 MS.gene85600:CDS 40.0%
CCCTGTAATTCCATTCAACA+AGG - chr1.3:55198883-55198902 None:intergenic 40.0%
CCCTTGTTGAATGGAATTAC+AGG + chr1.3:55198879-55198898 MS.gene85600:intron 40.0%
CTGAAAAGGAATCTCAGCTA+AGG - chr1.3:55196214-55196233 None:intergenic 40.0%
CTGCACTATGTCATAGTATG+TGG + chr1.3:55197680-55197699 MS.gene85600:intron 40.0%
CTGCTACATACTTCCAATAG+TGG + chr1.3:55197330-55197349 MS.gene85600:intron 40.0%
GAAGAGGACCAACAAAATGA+GGG + chr1.3:55196814-55196833 MS.gene85600:intron 40.0%
GACTACACAATGTTGATCCA+GGG + chr1.3:55197758-55197777 MS.gene85600:intron 40.0%
GAGTTTATATTTAGGGGGTG+GGG + chr1.3:55196179-55196198 MS.gene85600:intron 40.0%
GGAATTACAAGAAGCAGATC+TGG + chr1.3:55198952-55198971 MS.gene85600:CDS 40.0%
GTAAATTGGCCACCCTATTA+TGG - chr1.3:55197810-55197829 None:intergenic 40.0%
TAGAAGATTCTTTACTGCCC+TGG - chr1.3:55197778-55197797 None:intergenic 40.0%
TATTGCACGTGATCCTTGTT+GGG - chr1.3:55198532-55198551 None:intergenic 40.0%
TCACACATCGCAACAATACA+TGG - chr1.3:55197835-55197854 None:intergenic 40.0%
TCCATACTTTACGGCTTTCT+GGG - chr1.3:55197612-55197631 None:intergenic 40.0%
TCCATTCTCAGTTGGCATAA+AGG - chr1.3:55198935-55198954 None:intergenic 40.0%
TCCTTTATGCCAACTGAGAA+TGG + chr1.3:55198931-55198950 MS.gene85600:CDS 40.0%
TCTGAATACAAAGTGTGAGG+TGG + chr1.3:55196235-55196254 MS.gene85600:intron 40.0%
TGACTACACAATGTTGATCC+AGG + chr1.3:55197757-55197776 MS.gene85600:intron 40.0%
TGCATTCATTAGGTCGTTGT+GGG + chr1.3:55199143-55199162 MS.gene85600:intron 40.0%
TTACAAGAAGCAGATCTGGT+GGG + chr1.3:55198956-55198975 MS.gene85600:CDS 40.0%
TTCCATACTTTACGGCTTTC+TGG - chr1.3:55197613-55197632 None:intergenic 40.0%
TTCTCTTCTTGAAATGCAGC+AGG - chr1.3:55199323-55199342 None:intergenic 40.0%
TTCTTCTTCAAAGCTGTCTC+CGG - chr1.3:55195607-55195626 None:intergenic 40.0%
! AATGCAGCAGGTGTCATAAA+AGG - chr1.3:55199311-55199330 None:intergenic 40.0%
! AGTGAGTCGATTCCATAGAA+GGG - chr1.3:55198811-55198830 None:intergenic 40.0%
! ATTGGAAGTATGTAGCAGAG+CGG - chr1.3:55197328-55197347 None:intergenic 40.0%
! CGGTCAGATCCATCTTTTAA+AGG - chr1.3:55198027-55198046 None:intergenic 40.0%
! CTTGGATTTTTCCATGGCAA+CGG + chr1.3:55195567-55195586 MS.gene85600:CDS 40.0%
! GATTTTCTATGCTCTGTCTC+AGG + chr1.3:55198482-55198501 MS.gene85600:intron 40.0%
! TAGTGAGTCGATTCCATAGA+AGG - chr1.3:55198812-55198831 None:intergenic 40.0%
! TTCGTCAATCGACTTCTTCA+GGG + chr1.3:55198592-55198611 MS.gene85600:CDS 40.0%
!! ACAGCTTTGAAGAAGAAGAG+GGG + chr1.3:55195610-55195629 MS.gene85600:CDS 40.0%
!! AGACAGCTTTGAAGAAGAAG+AGG + chr1.3:55195608-55195627 MS.gene85600:CDS 40.0%
!! GACAGCTTTGAAGAAGAAGA+GGG + chr1.3:55195609-55195628 MS.gene85600:CDS 40.0%
!! GGTGGATGTGGATATTTTTG+TGG + chr1.3:55196253-55196272 MS.gene85600:intron 40.0%
!! TTTGGTGCTGTGAATGTAGT+GGG + chr1.3:55195493-55195512 MS.gene85600:CDS 40.0%
!!! TTTTGGTGCTGTGAATGTAG+TGG + chr1.3:55195492-55195511 MS.gene85600:CDS 40.0%
AGCAAAACAGCAAGAAGCAG+AGG + chr1.3:55199192-55199211 MS.gene85600:CDS 45.0%
ATACTTCCAATAGTGGCCAG+TGG + chr1.3:55197337-55197356 MS.gene85600:intron 45.0%
ATCGACGATGAAATCGGCAT+AGG - chr1.3:55195697-55195716 None:intergenic 45.0%
ATCTCTGTCTTCAGCAGATG+AGG - chr1.3:55199387-55199406 None:intergenic 45.0%
ATGCACAACATAGTGCGTGT+TGG - chr1.3:55199128-55199147 None:intergenic 45.0%
ATGTCCGCATTCGTCTTACT+TGG - chr1.3:55197430-55197449 None:intergenic 45.0%
GAGAGTTCTCAGCTTGGAAA+AGG + chr1.3:55195728-55195747 MS.gene85600:CDS 45.0%
GAGGGAATTGCATACTCAGT+AGG + chr1.3:55198269-55198288 MS.gene85600:CDS 45.0%
GAGTTCTCAGCTTGGAAAAG+GGG + chr1.3:55195730-55195749 MS.gene85600:CDS 45.0%
GCAAAACAGCAAGAAGCAGA+GGG + chr1.3:55199193-55199212 MS.gene85600:CDS 45.0%
GTCTTAATCATCGGGTTCCT+AGG - chr1.3:55196607-55196626 None:intergenic 45.0%
GTGCATTCATTAGGTCGTTG+TGG + chr1.3:55199142-55199161 MS.gene85600:intron 45.0%
GTTGAATGGAATTACAGGGG+CGG + chr1.3:55198884-55198903 MS.gene85600:intron 45.0%
GTTTATATTTAGGGGGTGGG+GGG + chr1.3:55196181-55196200 MS.gene85600:intron 45.0%
TACAAAGTGTGAGGTGGATG+TGG + chr1.3:55196241-55196260 MS.gene85600:intron 45.0%
TACTCCAGAGTTTACCTGCA+CGG - chr1.3:55199058-55199077 None:intergenic 45.0%
TGATGATTAACATGCGGAGG+AGG - chr1.3:55199254-55199273 None:intergenic 45.0%
TGGCATAAAGGAACCAGACA+AGG - chr1.3:55198923-55198942 None:intergenic 45.0%
TTTAGAGGCCAAAATGGCAG+TGG - chr1.3:55197279-55197298 None:intergenic 45.0%
TTTGAAAGTCCACCTGTGCA+AGG + chr1.3:55195802-55195821 MS.gene85600:CDS 45.0%
! CTTCGTCAATCGACTTCTTC+AGG + chr1.3:55198591-55198610 MS.gene85600:CDS 45.0%
! GCTAGTTTGTCGTGTAGAAC+TGG + chr1.3:55196425-55196444 MS.gene85600:intron 45.0%
! GTTGTGGGAAGTTTTCTTCC+TGG + chr1.3:55199158-55199177 MS.gene85600:CDS 45.0%
! TCGTCAATCGACTTCTTCAG+GGG + chr1.3:55198593-55198612 MS.gene85600:CDS 45.0%
! TGCATGTGAACATGCTGACT+TGG + chr1.3:55197503-55197522 MS.gene85600:intron 45.0%
! TTTTCTTCCTGGTCACCATC+TGG + chr1.3:55199169-55199188 MS.gene85600:CDS 45.0%
!! GAATGTAGTGGGTGGTAATG+AGG + chr1.3:55195504-55195523 MS.gene85600:CDS 45.0%
!! GCTGGTTTGCTTATAGCTTC+CGG + chr1.3:55199030-55199049 MS.gene85600:CDS 45.0%
!!! GCCATTTTGGCCTCTAAAGT+GGG + chr1.3:55197281-55197300 MS.gene85600:intron 45.0%
!!! TCTTGCTGTTTTGCTCCAGA+TGG - chr1.3:55199187-55199206 None:intergenic 45.0%
!!! TGCCATTTTGGCCTCTAAAG+TGG + chr1.3:55197280-55197299 MS.gene85600:intron 45.0%
AAACAGCAAGAAGCAGAGGG+TGG + chr1.3:55199196-55199215 MS.gene85600:CDS 50.0%
ACTCCAGAGTTTACCTGCAC+GGG - chr1.3:55199057-55199076 None:intergenic 50.0%
AGAAGAAGAGGGGAAGACCA+AGG + chr1.3:55195620-55195639 MS.gene85600:CDS 50.0%
AGGGGAAGACCAAGGAAGTA+TGG + chr1.3:55195628-55195647 MS.gene85600:CDS 50.0%
CAGCTTGGAAAAGGGGTAGA+GGG + chr1.3:55195737-55195756 MS.gene85600:CDS 50.0%
CCATCTGGACCATACTTCCT+TGG - chr1.3:55195640-55195659 None:intergenic 50.0%
GCCCAGAAAGCCGTAAAGTA+TGG + chr1.3:55197608-55197627 MS.gene85600:intron 50.0%
GCTGAGAACTCTCCAGTCAA+CGG - chr1.3:55195721-55195740 None:intergenic 50.0%
GCTTACAGTGAATTCTGGCG+AGG + chr1.3:55198313-55198332 MS.gene85600:CDS 50.0%
GGTTGGCACTCTGTCTTTGA+AGG + chr1.3:55197573-55197592 MS.gene85600:intron 50.0%
TCAGCTTGGAAAAGGGGTAG+AGG + chr1.3:55195736-55195755 MS.gene85600:CDS 50.0%
TGACTGGAGAGTTCTCAGCT+TGG + chr1.3:55195722-55195741 MS.gene85600:CDS 50.0%
TGAGCTTTCAAGCTGCTCCA+AGG + chr1.3:55195533-55195552 MS.gene85600:CDS 50.0%
TGGTGGGATGAGTGTCTCTT+TGG + chr1.3:55198972-55198991 MS.gene85600:CDS 50.0%
! CCAAGGAAGTATGGTCCAGA+TGG + chr1.3:55195637-55195656 MS.gene85600:CDS 50.0%
! CGTCAATCGACTTCTTCAGG+GGG + chr1.3:55198594-55198613 MS.gene85600:CDS 50.0%
! GCCCACTTTAGAGGCCAAAA+TGG - chr1.3:55197285-55197304 None:intergenic 50.0%
! GTAGGTGGAGGTGTAAGTGA+GGG + chr1.3:55198251-55198270 MS.gene85600:CDS 50.0%
! TCCATGATAGCGACGCATAG+TGG + chr1.3:55196925-55196944 MS.gene85600:intron 50.0%
! TGTAGGTGGAGGTGTAAGTG+AGG + chr1.3:55198250-55198269 MS.gene85600:CDS 50.0%
! TTTTGCTCCAGATGGTGACC+AGG - chr1.3:55199179-55199198 None:intergenic 50.0%
! TTTTTCCATGGCAACGGTGC+CGG + chr1.3:55195573-55195592 MS.gene85600:CDS 50.0%
!! AGGGGGTACCTTAACGTATG+AGG + chr1.3:55198611-55198630 MS.gene85600:CDS 50.0%
!! GTGCAGGTAAACTCTGGAGT+AGG + chr1.3:55199057-55199076 MS.gene85600:intron 50.0%
!! TCATCGTCGATTCCGTTGAC+TGG + chr1.3:55195706-55195725 MS.gene85600:CDS 50.0%
!! TGCTGGAACCACTGCCATTT+TGG + chr1.3:55197268-55197287 MS.gene85600:intron 50.0%
AGAGTTTACCTGCACGGGAC+CGG - chr1.3:55199052-55199071 None:intergenic 55.0%
CACCCAATACTCGGCCATCT+GGG - chr1.3:55199002-55199021 None:intergenic 55.0%
CGAGTCCACCACCCAATACT+CGG - chr1.3:55199011-55199030 None:intergenic 55.0%
CGCTGTTGTGCCCACTTTAG+AGG - chr1.3:55197294-55197313 None:intergenic 55.0%
GCCACTATGCGTCGCTATCA+TGG - chr1.3:55196929-55196948 None:intergenic 55.0%
GGAGCAGCTTGAAAGCTCAC+AGG - chr1.3:55195532-55195551 None:intergenic 55.0%
GGGATGAGTGTCTCTTTGGC+AGG + chr1.3:55198976-55198995 MS.gene85600:CDS 55.0%
TGCACGTGATCCTTGTTGGG+AGG - chr1.3:55198529-55198548 None:intergenic 55.0%
TTCCAATAGTGGCCAGTGGC+CGG + chr1.3:55197341-55197360 MS.gene85600:intron 55.0%
! GGTGCTGTGAATGTAGTGGG+TGG + chr1.3:55195496-55195515 MS.gene85600:CDS 55.0%
AGGCCCAGATGGCCGAGTAT+TGG + chr1.3:55198996-55199015 MS.gene85600:CDS 60.0%
CCACCCAATACTCGGCCATC+TGG - chr1.3:55199003-55199022 None:intergenic 60.0%
CCAGATGGTAAGCCTGCTCC+TGG + chr1.3:55195652-55195671 MS.gene85600:CDS 60.0%
CCAGGAGCAGGCTTACCATC+TGG - chr1.3:55195655-55195674 None:intergenic 60.0%
GGCCCAGATGGCCGAGTATT+GGG + chr1.3:55198997-55199016 MS.gene85600:CDS 60.0%
GGTCCCGTGCAGGTAAACTC+TGG + chr1.3:55199051-55199070 MS.gene85600:intron 60.0%
GTCTCTTTGGCAGGCCCAGA+TGG + chr1.3:55198985-55199004 MS.gene85600:CDS 60.0%
TATAGCTTCCGGTCCCGTGC+AGG + chr1.3:55199041-55199060 MS.gene85600:CDS 60.0%
TATTTAGGGGGTGGGGGGAG+TGG + chr1.3:55196186-55196205 MS.gene85600:intron 60.0%
TTTGTCCCTTCTCCGGCCAC+TGG - chr1.3:55197356-55197375 None:intergenic 60.0%
! GAAAGCGCAGTCACAGCTCC+AGG - chr1.3:55195673-55195692 None:intergenic 60.0%
!! CCAGATGGCCGAGTATTGGG+TGG + chr1.3:55199000-55199019 MS.gene85600:CDS 60.0%
!! GATGGCCGAGTATTGGGTGG+TGG + chr1.3:55199003-55199022 MS.gene85600:CDS 60.0%
!! GTATTGGGTGGTGGACTCGC+TGG + chr1.3:55199012-55199031 MS.gene85600:CDS 60.0%
AGTGGCCAGTGGCCGGAGAA+GGG + chr1.3:55197348-55197367 MS.gene85600:intron 65.0%
CTCCGGCCACTGGCCACTAT+TGG - chr1.3:55197346-55197365 None:intergenic 65.0%
GCAGTCACAGCTCCAGGAGC+AGG - chr1.3:55195667-55195686 None:intergenic 65.0%
GCTGTCTCCGGCAACGACAC+CGG - chr1.3:55195595-55195614 None:intergenic 65.0%
TAGTGGCCAGTGGCCGGAGA+AGG + chr1.3:55197347-55197366 MS.gene85600:intron 65.0%
!! AACGGTGCCGGTGTCGTTGC+CGG + chr1.3:55195585-55195604 MS.gene85600:CDS 65.0%
CGACACCGGCACCGTTGCCA+TGG - chr1.3:55195581-55195600 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 55195475 55199451 55195475 ID=MS.gene85600
chr1.3 mRNA 55195475 55199451 55195475 ID=MS.gene85600.t1;Parent=MS.gene85600
chr1.3 exon 55195475 55195823 55195475 ID=MS.gene85600.t1.exon1;Parent=MS.gene85600.t1
chr1.3 CDS 55195475 55195823 55195475 ID=cds.MS.gene85600.t1;Parent=MS.gene85600.t1
chr1.3 exon 55198249 55198334 55198249 ID=MS.gene85600.t1.exon2;Parent=MS.gene85600.t1
chr1.3 CDS 55198249 55198334 55198249 ID=cds.MS.gene85600.t1;Parent=MS.gene85600.t1
chr1.3 exon 55198504 55198632 55198504 ID=MS.gene85600.t1.exon3;Parent=MS.gene85600.t1
chr1.3 CDS 55198504 55198632 55198504 ID=cds.MS.gene85600.t1;Parent=MS.gene85600.t1
chr1.3 exon 55198901 55199062 55198901 ID=MS.gene85600.t1.exon4;Parent=MS.gene85600.t1
chr1.3 CDS 55198901 55199062 55198901 ID=cds.MS.gene85600.t1;Parent=MS.gene85600.t1
chr1.3 exon 55199155 55199451 55199155 ID=MS.gene85600.t1.exon5;Parent=MS.gene85600.t1
chr1.3 CDS 55199155 55199451 55199155 ID=cds.MS.gene85600.t1;Parent=MS.gene85600.t1
Gene Sequence

>MS.gene85600

ATGGAAGAAAGAGAGAATTTTGGTGCTGTGAATGTAGTGGGTGGTAATGAGGTTCCTGTGAGCTTTCAAGCTGCTCCAAGGATTGATAACAACTTGGATTTTTCCATGGCAACGGTGCCGGTGTCGTTGCCGGAGACAGCTTTGAAGAAGAAGAGGGGAAGACCAAGGAAGTATGGTCCAGATGGTAAGCCTGCTCCTGGAGCTGTGACTGCGCTTTCGCCTATGCCGATTTCATCGTCGATTCCGTTGACTGGAGAGTTCTCAGCTTGGAAAAGGGGTAGAGGGAAGCCTGTTGAATCTATGAAGAAATCATCTTTTAAGTTTGATTTTGAAAGTCCACCTGTGCAAGGTATTATTTATAGTTATTTGATCTTTGAAATGTTTTGAAGCTTTTAATTTTAGTTAGTATGTGTTTATTTTTCCTTTTTTTCTTATAATTTTCATTGACTGTTACTATGTTTCTAAGGTTTTGTTTTTACTGTTACATTTGCAGTTTTTGAGAAATGAGAGTGGAATTCATTATTATTCAGGAAAATAAACAGTGAAATTTATAATGAATCAATTAATCCTCTTGTTATTTTTTCAACATAATTGATTTTTGTTTTCATTTTAATTTTTGTTTTTTGAGTTCTAATTGTTATGGAGGTAGTTATTTTCTCTGATCTGTGTTTATAGTGTGAATTTGTATTTTTGATTTTGTGATAGAGTTTATATTTAGGGGGTGGGGGGAGTGGACCCTTAGCTGAGATTCCTTTTCAGATCTGAATACAAAGTGTGAGGTGGATGTGGATATTTTTGTGGTTGAAAGTGAGGTTGTATTTGTTCTGTTTAGGGTAGCTTATGATGCTCCTTATTTTCCTTTATAAGAAGAAGAAAAGTATTGCATTATATGACAATGGAAATGGTTAGAGTAAATGAAGGGACCAACTAGAATGAGTCTAATAGTTATAGCTAGTTTGTCGTGTAGAACTGGTCTAAATCTAATCTAATAACAATAATTAATTTTAACATCTTACTAATCACCTTGTTGGTTGGTTTGAATAATAGGCTGCAAAATAGGAATTTCAGTCTGAAATATTTCCAAATTTTAACTTGTTCTTAATCATGGATATATTATTAAGAGCAATCTCCTAGGAACCCGATGATTAAGACAAAAAAATGTGATCTTCTTGTAAAAAATAGAGTGGTCTCTTAGAATGGTAGTATCCATCAGTATTTTAATCAAAGGCATTGATATATATTTTAAAGTTTGCAGAAGAGATTTTTGGTTGCATATAGTATAAGGTATGCTTGGATGAAGAGATTTATAGAACGTATTAGGTAGAAATTTCTGTGTGAAGAAGAGGACCAACAAAATGAGGGACTTTAATAAGATCATTTTAAAACGCTACCTTTGTTTTTTTTTTAACATTCACATGTTCTGCCATTTTTTTGGCATAGTTATTATCAATCCATGATAGCGACGCATAGTGGCTGACCCTAAACATGCTATATTCAGAGAACGTATTCTGAATTTCATATACATATTAAATTAAATTATTAATAATACAATATATACAAATGCCAATAATTTACATAATACTTAAAATTTAACAAATACTCTTAAGTAACAATAATAAGTCATAGTTCTTAATCAAAACACTAGTAAATACCAAAAAACTCGTAAAACAAACAAGTTTAAGCATCTAAATGCTTAATGTAACTAAACATCAAAATTTGATGTTTATATCCCAATATTAGACGAATAAAACCCTAAAACATCCCTAATACCACATTTTTCTGAAACTTTTAGTTGCTGGAACCACTGCCATTTTGGCCTCTAAAGTGGGCACAACAGCGACAGAAGAAAACCGCTCTGCTACATACTTCCAATAGTGGCCAGTGGCCGGAGAAGGGACAAAGATCATTACTTAATACTGGCATTTTCTTCCCTTTTCTTTATCTTGCAACATCCAAGTAAGACGAATGCGGACATTGAATTGTGTGTTGTTTAACATGGTAGACAACATGCATATGTTACGTTTTGCATGCATGTGAACATGCTGACTTGGTGACTTCTATATCTGAACAAGATCTGGGTTCTTTAATTGTTTAAGAGGGTTGGCACTCTGTCTTTGAAGGTTATGAATTAAGGCCCAGAAAGCCGTAAAGTATGGAACACAATTATTTATGGACTCGGTTATGTGGATACTGTTGTAATCGCTTCTGCACTATGTCATAGTATGTGGTTGCAAGTCAGAACTCTATAAGCAACATATAGAAGAGAAGACACTTAATTGTTTTGACTACACAATGTTGATCCAGGGCAGTAAAGAATCTTCTAAAATTAGGACCATAATAGGGTGGCCAATTTACTGCCATGTATTGTTGCGATGTGTGAGGATGTTGAGTTTGCTGTCTAATTAAATACATGAATTGAGCTGGAGTTAAGACTTTCAAATATGGTTATTGAATTTTTCATCGTTCTAAAAATTCTTTATGCTTAATTTGCTGTTTCTATTATTGAAGTCTCTTGGAAAATAAATCATTTTCCTTCAAATCTACCTCATCCTTTAAAAGATGGATCTGACCGAATGATACATAAGCTTCTTCTTTTCTTTATTTTTTATTTTATTTTTATATTTAATGGGTTGCTTTTATATAATGAATGAACTGGTTATTGTTTTTATTTTTGTGAACTATAAAGGAAGTTCCTCTCTAGAATTTCTTTATTACATTCTTGCATTTCCTGTCTTTCTCCATCAATTGATCTTCCTTATACGTATTTTATGTAGTTGTAGGTGGAGGTGTAAGTGAGGGAATTGCATACTCAGTAGGTGCCAACTTCACAGCTTATGTGCTTACAGTGAATTCTGGCGAGGTAATCTGTTCCTTTCCTTTTATCATATTTTATATGGTATGGATCAAGTGGTTGTGTATGTTGTCATTATTGAAGTAAATTATTGACTCTGGATTGTAGTTTTTGAATTTCATTTTTGGTGTTCCACATGCTCATTTTAGCATTTATGATTTTCTATGCTCTGTCTCAGGATGTTACCATGAAAATTATGTCCTCCCAACAAGGATCACGTGCAATATGTATTCTCTCTGCCACTGGCACAATTTCAAATGTTACACTTCGTCAATCGACTTCTTCAGGGGGTACCTTAACGTATGAGGTGAGTTTAATCTTGTTCATCTACATAAAAAAAATAGAGTTCAGTCATTTGTTTCTCTATCATATTGGAATATGTACCATAAAGTCCTTCGTTTATATGCAGCCATGTCTGTCTTGTATTATATGTATTGATGTGTTGACTCTACACATATCAAATATTAATTAATTTTGAGTTTCCCTTCTATGGAATCGACTCACTAACTCCATACTGAATCGGTGTTACATATATCTTTCAATTTCATTTATGCCCTTGTTGAATGGAATTACAGGGGCGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAATTACAAGAAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGCCCAGATGGCCGAGTATTGGGTGGTGGACTCGCTGGTTTGCTTATAGCTTCCGGTCCCGTGCAGGTAAACTCTGGAGTAGGTTTTATAAAAAAAAATGTTAGCAACACTCATTTAACACTCTCTTTCCAACACGCACTATGTTGTGCATTCATTAGGTCGTTGTGGGAAGTTTTCTTCCTGGTCACCATCTGGAGCAAAACAGCAAGAAGCAGAGGGTGGAGCATAATATATCGACTATTACACATAATAATCCTCCTCCGCATGTTAATCATCATGTGTCTAATGAAGTAAGTTTCGGTGGAGTGAAGCCTTTTATGACACCTGCTGCATTTCAAGAAGAGAATATTGTTTCTTTCAACAACAATGCTCAAGACTCTAGGAACACCTCATCTGCTGAAGACAGAGATCCTTTACCTGAAAAGGACTCTAATCATAGTCAATCAACTACTTGA
Protein sequence

>MS.gene85600.t1

MEERENFGAVNVVGGNEVPVSFQAAPRIDNNLDFSMATVPVSLPETALKKKRGRPRKYGPDGKPAPGAVTALSPMPISSSIPLTGEFSAWKRGRGKPVESMKKSSFKFDFESPPVQVVGGGVSEGIAYSVGANFTAYVLTVNSGEDVTMKIMSSQQGSRAICILSATGTISNVTLRQSTSSGGTLTYEGRFEILSLSGSFMPTENGITRSRSGGMSVSLAGPDGRVLGGGLAGLLIASGPVQVVVGSFLPGHHLEQNSKKQRVEHNISTITHNNPPPHVNHHVSNEVSFGGVKPFMTPAAFQEENIVSFNNNAQDSRNTSSAEDRDPLPEKDSNHSQSTT