Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85783.t1 | PNX73002.1 | 42.7 | 843 | 180 | 8 | 109 | 737 | 1 | 754 | 1.00E-160 | 577.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85783.t1 | Q9SZL8 | 28.9 | 194 | 130 | 3 | 265 | 453 | 448 | 638 | 9.9e-16 | 87.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85783.t1 | A0A2K3L384 | 42.7 | 843 | 180 | 8 | 109 | 737 | 1 | 754 | 7.2e-161 | 577.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene85783.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060268 | MS.gene85783 | 0.962595 | 4.58E-121 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85783.t1 | MTR_3g080590 | 88.387 | 155 | 18 | 0 | 1 | 155 | 1 | 155 | 1.06e-79 | 253 |
| MS.gene85783.t1 | MTR_7g446520 | 46.114 | 193 | 89 | 2 | 98 | 290 | 81 | 258 | 1.18e-44 | 164 |
| MS.gene85783.t1 | MTR_0645s0010 | 67.593 | 108 | 29 | 3 | 288 | 395 | 24 | 125 | 1.19e-35 | 131 |
| MS.gene85783.t1 | MTR_7g446480 | 52.679 | 112 | 53 | 0 | 179 | 290 | 140 | 251 | 1.61e-31 | 125 |
| MS.gene85783.t1 | MTR_7g028855 | 45.395 | 152 | 78 | 2 | 98 | 245 | 113 | 263 | 4.62e-30 | 124 |
| MS.gene85783.t1 | MTR_7g446510 | 51.786 | 112 | 54 | 0 | 179 | 290 | 155 | 266 | 7.70e-29 | 118 |
| MS.gene85783.t1 | MTR_1g070355 | 31.818 | 176 | 117 | 2 | 105 | 277 | 74 | 249 | 7.26e-21 | 97.8 |
| MS.gene85783.t1 | MTR_5g076070 | 28.415 | 183 | 116 | 3 | 85 | 264 | 45 | 215 | 1.54e-20 | 93.2 |
| MS.gene85783.t1 | MTR_6g022080 | 27.439 | 164 | 116 | 1 | 104 | 264 | 84 | 247 | 5.09e-18 | 84.7 |
| MS.gene85783.t1 | MTR_8g035530 | 46.753 | 77 | 39 | 1 | 92 | 168 | 1 | 75 | 1.38e-16 | 75.5 |
| MS.gene85783.t1 | MTR_8g468460 | 40.000 | 100 | 57 | 2 | 309 | 408 | 9 | 105 | 2.13e-13 | 67.4 |
| MS.gene85783.t1 | MTR_0402s0040 | 29.885 | 174 | 117 | 5 | 108 | 278 | 29 | 200 | 3.15e-13 | 73.2 |
| MS.gene85783.t1 | MTR_3g450850 | 29.651 | 172 | 109 | 4 | 111 | 270 | 53 | 224 | 7.80e-13 | 71.2 |
| MS.gene85783.t1 | MTR_4g035820 | 29.121 | 182 | 120 | 4 | 111 | 285 | 81 | 260 | 2.75e-12 | 70.9 |
| MS.gene85783.t1 | MTR_6g051425 | 28.261 | 184 | 121 | 5 | 112 | 287 | 24 | 204 | 4.63e-12 | 68.6 |
| MS.gene85783.t1 | MTR_1g008290 | 31.034 | 116 | 75 | 2 | 173 | 288 | 21 | 131 | 8.62e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85783.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 5.25e-19 | 92.0 |
| MS.gene85783.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 5.38e-19 | 92.0 |
| MS.gene85783.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 6.07e-19 | 92.0 |
| MS.gene85783.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 6.74e-19 | 92.0 |
| MS.gene85783.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 6.74e-19 | 92.0 |
| MS.gene85783.t1 | AT4G38180 | 29.469 | 207 | 132 | 5 | 252 | 453 | 441 | 638 | 1.94e-18 | 90.9 |
| MS.gene85783.t1 | AT4G38180 | 30.337 | 267 | 170 | 9 | 33 | 290 | 3 | 262 | 1.14e-15 | 82.0 |
| MS.gene85783.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.66e-18 | 89.7 |
| MS.gene85783.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.66e-18 | 89.7 |
| MS.gene85783.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.66e-18 | 89.7 |
| MS.gene85783.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.66e-18 | 89.7 |
| MS.gene85783.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.66e-18 | 89.7 |
| MS.gene85783.t1 | AT3G22170 | 27.679 | 224 | 151 | 5 | 288 | 508 | 461 | 676 | 3.11e-16 | 84.0 |
| MS.gene85783.t1 | AT3G22170 | 27.679 | 224 | 151 | 5 | 288 | 508 | 461 | 676 | 3.11e-16 | 84.0 |
| MS.gene85783.t1 | AT2G27110 | 26.829 | 246 | 158 | 8 | 250 | 491 | 386 | 613 | 2.04e-15 | 81.3 |
| MS.gene85783.t1 | AT2G27110 | 26.829 | 246 | 158 | 8 | 250 | 491 | 386 | 613 | 2.04e-15 | 81.3 |
| MS.gene85783.t1 | AT2G27110 | 26.829 | 246 | 158 | 8 | 250 | 491 | 241 | 468 | 2.14e-15 | 80.9 |
| MS.gene85783.t1 | AT4G38170 | 26.425 | 193 | 136 | 3 | 260 | 449 | 210 | 399 | 2.17e-15 | 80.5 |
| MS.gene85783.t1 | AT1G10240 | 30.508 | 177 | 108 | 6 | 111 | 276 | 54 | 226 | 2.63e-12 | 70.9 |
| MS.gene85783.t1 | AT1G10240 | 30.508 | 177 | 108 | 6 | 111 | 276 | 54 | 226 | 2.63e-12 | 70.9 |
| MS.gene85783.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 9.11e-12 | 69.3 |
| MS.gene85783.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 9.11e-12 | 69.3 |
| MS.gene85783.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 343 | 506 | 1.21e-11 | 68.9 |
| MS.gene85783.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 1.22e-11 | 68.9 |
| MS.gene85783.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 1.30e-11 | 68.9 |
| MS.gene85783.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 1.30e-11 | 68.9 |
| MS.gene85783.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 414 | 577 | 1.40e-11 | 68.6 |
| MS.gene85783.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 3.48e-11 | 67.4 |
| MS.gene85783.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 3.54e-11 | 67.4 |
| MS.gene85783.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 3.54e-11 | 67.4 |
| MS.gene85783.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 9.32e-11 | 65.9 |
Find 142 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACTGATCCACCATTATT+TGG | 0.155571 | 6.4:+13578530 | None:intergenic |
| TCAATGTTGATTGTGATATT+TGG | 0.171428 | 6.4:+13578767 | None:intergenic |
| CTCTTGCAAATCAGACTTTC+AGG | 0.192125 | 6.4:+13579556 | None:intergenic |
| TCACTCAATTTACGGTAATT+AGG | 0.235603 | 6.4:+13580855 | None:intergenic |
| CCCATAGTTTCTCAATGTTT+TGG | 0.242135 | 6.4:+13578255 | None:intergenic |
| TATCAACTTCACTCAATTTA+CGG | 0.276736 | 6.4:+13580847 | None:intergenic |
| ATCACTCGCAACAAATTTAC+TGG | 0.280329 | 6.4:+13579303 | None:intergenic |
| TAACACCATACCCAACATTA+TGG | 0.313783 | 6.4:+13578579 | None:intergenic |
| AGGACTTGGGTTTATCAAAA+AGG | 0.326599 | 6.4:-13580739 | MS.gene85783:CDS |
| CAGTGTTAGAATGTGATGAT+AGG | 0.338987 | 6.4:+13578483 | None:intergenic |
| TGATAAACCCAAGTCCTTCA+TGG | 0.346028 | 6.4:+13580745 | None:intergenic |
| AGATGATGATATAAGGGATA+TGG | 0.347376 | 6.4:-13581192 | MS.gene85783:CDS |
| ACGACTTTGTTCGTACGATT+TGG | 0.356788 | 6.4:-13580944 | MS.gene85783:CDS |
| ACACCAATTCCAGCAAGTTC+TGG | 0.360337 | 6.4:+13579148 | None:intergenic |
| ATGTGACAGATGATGATATA+AGG | 0.367162 | 6.4:-13581199 | MS.gene85783:CDS |
| CTCGGAACATTGTGTGTTCC+AGG | 0.370631 | 6.4:+13578434 | None:intergenic |
| TAAGAGCGCAAGTGATTATA+AGG | 0.371814 | 6.4:-13579404 | MS.gene85783:CDS |
| TGTAAGAACATGTCATATCT+TGG | 0.387474 | 6.4:-13580793 | MS.gene85783:CDS |
| TGTTCTAATTGTAGAAATCC+TGG | 0.392101 | 6.4:-13579190 | MS.gene85783:CDS |
| CACTATGGGGTGCCAAATAA+TGG | 0.393131 | 6.4:-13578542 | MS.gene85783:CDS |
| ATCCATGTTGTCATACTTCA+TGG | 0.394339 | 6.4:+13579585 | None:intergenic |
| ACTGGAACACACAATGTTCC+TGG | 0.398163 | 6.4:-13578452 | MS.gene85783:CDS |
| ATCATTCGCAACAAATTTGT+TGG | 0.403036 | 6.4:+13579276 | None:intergenic |
| TCTAACACTGCTCTGCATAC+TGG | 0.407068 | 6.4:-13578470 | MS.gene85783:CDS |
| ATATAATTTCACGGATCATC+AGG | 0.409639 | 6.4:-13580712 | MS.gene85783:CDS |
| GATTATAAGGAGGCTCTAGA+AGG | 0.413898 | 6.4:-13579391 | MS.gene85783:CDS |
| GATTCATTATCAGACTCAAT+AGG | 0.414121 | 6.4:+13579094 | None:intergenic |
| GCACTGGTATTACACGTAAG+AGG | 0.418801 | 6.4:-13578886 | MS.gene85783:CDS |
| AACAAATACAAGCACTAGAA+AGG | 0.422563 | 6.4:-13578807 | MS.gene85783:CDS |
| TGTCCAGAACTTGCTGGAAT+TGG | 0.422787 | 6.4:-13579151 | MS.gene85783:CDS |
| AAAGTTTAAAGATGTCAAAA+AGG | 0.436388 | 6.4:-13579806 | MS.gene85783:CDS |
| TACGGTAATTAGGCATCAAA+TGG | 0.442752 | 6.4:+13580865 | None:intergenic |
| CGCAGAACAATTAGTTCGAA+TGG | 0.445789 | 6.4:+13580983 | None:intergenic |
| AAGGGTGGCCATGAAGGACT+TGG | 0.449428 | 6.4:-13580753 | MS.gene85783:CDS |
| TAAATTTGTTGCGAGTGATA+AGG | 0.460501 | 6.4:-13579299 | MS.gene85783:CDS |
| AAATGGACATGACGAGGATA+AGG | 0.462491 | 6.4:-13579326 | MS.gene85783:CDS |
| GTAAGAACATGTCATATCTT+GGG | 0.464989 | 6.4:-13580792 | MS.gene85783:CDS |
| GCGTCAATTAGTATGCAATA+AGG | 0.467578 | 6.4:-13581057 | MS.gene85783:CDS |
| AACGCAAAGGAGCTAATTCA+TGG | 0.469712 | 6.4:+13580892 | None:intergenic |
| AGTGTTAGAATGTGATGATA+GGG | 0.470693 | 6.4:+13578484 | None:intergenic |
| TTCGAATGGTTAGCGTAGAT+CGG | 0.471186 | 6.4:+13580997 | None:intergenic |
| AATAGCCGTCATGAGGGAAA+TGG | 0.477370 | 6.4:-13579343 | MS.gene85783:CDS |
| CAAGGGAAAGAGAACTTTGA+TGG | 0.478759 | 6.4:-13581239 | MS.gene85783:CDS |
| CGGACGTGTCCAGAACTTGC+TGG | 0.483560 | 6.4:-13579157 | MS.gene85783:CDS |
| AAAGGACTTATATAATTTCA+CGG | 0.493961 | 6.4:-13580721 | MS.gene85783:CDS |
| GAAATCCTGGGCACACAATA+CGG | 0.497533 | 6.4:-13579177 | MS.gene85783:CDS |
| CACTCTGTAGCAGTGTCAAA+TGG | 0.499398 | 6.4:-13578929 | MS.gene85783:CDS |
| ATGTGAAGCGTGATTCTAAT+GGG | 0.504223 | 6.4:-13581091 | MS.gene85783:CDS |
| AATGGTGTGACCCGTGACTT+TGG | 0.505092 | 6.4:-13578650 | MS.gene85783:CDS |
| GCAAGGGTTAAAATACAAGA+TGG | 0.508614 | 6.4:-13580690 | MS.gene85783:CDS |
| GTATCACTATGTACATCAAA+AGG | 0.509968 | 6.4:+13581470 | None:intergenic |
| GGTCAAAAGGGTGGCCATGA+AGG | 0.510809 | 6.4:-13580759 | MS.gene85783:CDS |
| CCACGGGTTTGAAGTAAGAA+AGG | 0.512169 | 6.4:-13581117 | MS.gene85783:CDS |
| TTAGAACAACATCTTGTCCT+TGG | 0.513299 | 6.4:+13579205 | None:intergenic |
| TGTGATGATAGGGTAGTTGT+CGG | 0.517812 | 6.4:+13578494 | None:intergenic |
| ATTTAGTCTGCAACTTGTCA+AGG | 0.524883 | 6.4:+13579668 | None:intergenic |
| CAAGGGTTAAAATACAAGAT+GGG | 0.527779 | 6.4:-13580689 | MS.gene85783:CDS |
| AACAACGATGTTCGTACTGA+TGG | 0.529175 | 6.4:-13581311 | MS.gene85783:CDS |
| AAAGTCTGATTTGCAAGAGA+TGG | 0.531904 | 6.4:-13579552 | MS.gene85783:CDS |
| GATGTGAAGCGTGATTCTAA+TGG | 0.532287 | 6.4:-13581092 | MS.gene85783:CDS |
| GTTCTAATTGTAGAAATCCT+GGG | 0.533951 | 6.4:-13579189 | MS.gene85783:CDS |
| AAGTGCCCCTCGACGAAACA+TGG | 0.534361 | 6.4:+13579462 | None:intergenic |
| CACGTCCGTATTGTGTGCCC+AGG | 0.534840 | 6.4:+13579172 | None:intergenic |
| ACAAATACAAGCACTAGAAA+GGG | 0.535750 | 6.4:-13578806 | MS.gene85783:CDS |
| GTAGTTGTCGGAGGGAATTG+TGG | 0.539742 | 6.4:+13578506 | None:intergenic |
| AATAAGGAGGGTGTTAATGA+TGG | 0.543414 | 6.4:-13581041 | MS.gene85783:CDS |
| AAGACAGCCATTGTGCAAGT+TGG | 0.545484 | 6.4:-13578604 | MS.gene85783:CDS |
| AGCTAATTCATGGTTGTGAG+AGG | 0.545517 | 6.4:+13580902 | None:intergenic |
| ACTTCATGGCACAAATAATG+TGG | 0.547507 | 6.4:+13579599 | None:intergenic |
| TCGTCATTTGCCTCCCAAGA+AGG | 0.555407 | 6.4:-13579502 | MS.gene85783:CDS |
| CACTGGTATTACACGTAAGA+GGG | 0.559146 | 6.4:-13578885 | MS.gene85783:CDS |
| GGTGTCGTGTCTGAAGATCA+AGG | 0.560464 | 6.4:-13579130 | MS.gene85783:CDS |
| CGAGATGTTGAGAAAAGCAC+TGG | 0.563759 | 6.4:-13578902 | MS.gene85783:CDS |
| TTCATCATTACCTTCTTGGG+AGG | 0.565482 | 6.4:+13579492 | None:intergenic |
| GTCTGAAGATCAAGGGGAGA+AGG | 0.567087 | 6.4:-13579122 | MS.gene85783:CDS |
| TATTGTTTGCAAAATACCAC+GGG | 0.573778 | 6.4:-13581133 | MS.gene85783:CDS |
| CCTTTGACATTCACCATCAG+TGG | 0.574175 | 6.4:+13579253 | None:intergenic |
| GTGGAATTTAACCATGGTAA+TGG | 0.576772 | 6.4:-13581275 | MS.gene85783:CDS |
| GCACAAATAATGTGGGAACA+TGG | 0.578248 | 6.4:+13579607 | None:intergenic |
| TGTGACAGATGATGATATAA+GGG | 0.581249 | 6.4:-13581198 | MS.gene85783:CDS |
| AAATGACCATGTTTCGTCGA+GGG | 0.581274 | 6.4:-13579468 | MS.gene85783:CDS |
| GTGTCGTGTCTGAAGATCAA+GGG | 0.581492 | 6.4:-13579129 | MS.gene85783:CDS |
| GCTAATTCATGGTTGTGAGA+GGG | 0.581523 | 6.4:+13580903 | None:intergenic |
| TCAATTAGTATGCAATAAGG+AGG | 0.584633 | 6.4:-13581054 | MS.gene85783:CDS |
| AATGACCATGTTTCGTCGAG+GGG | 0.585541 | 6.4:-13579467 | MS.gene85783:CDS |
| GCAAGTTGGAACCATAATGT+TGG | 0.585606 | 6.4:-13578590 | MS.gene85783:CDS |
| TAAGATAAATAGCCGTCATG+AGG | 0.585792 | 6.4:-13579350 | MS.gene85783:CDS |
| AGGGTGGCCATGAAGGACTT+GGG | 0.586883 | 6.4:-13580752 | MS.gene85783:CDS |
| GAAGCTTCAAAGATATTCAC+CGG | 0.587720 | 6.4:-13579832 | MS.gene85783:CDS |
| AAGATAAATAGCCGTCATGA+GGG | 0.587755 | 6.4:-13579349 | MS.gene85783:CDS |
| ATACTCACCGGTGTATAACT+CGG | 0.588936 | 6.4:+13578416 | None:intergenic |
| ATGATAGGGTAGTTGTCGGA+GGG | 0.591320 | 6.4:+13578498 | None:intergenic |
| ATTTCACGGATCATCAGGCA+AGG | 0.592596 | 6.4:-13580707 | MS.gene85783:CDS |
| TGGAACCATAATGTTGGGTA+TGG | 0.594448 | 6.4:-13578584 | MS.gene85783:CDS |
| CTTCATGGCACAAATAATGT+GGG | 0.594948 | 6.4:+13579600 | None:intergenic |
| TATGAGTGCGTTGAAGAATG+TGG | 0.597255 | 6.4:-13578313 | MS.gene85783:CDS |
| GAACGAGATGAAGATGAGGA+TGG | 0.598765 | 6.4:-13579751 | MS.gene85783:CDS |
| GTATTGTTTGCAAAATACCA+CGG | 0.599210 | 6.4:-13581134 | MS.gene85783:CDS |
| CAAGTTGGAACCATAATGTT+GGG | 0.599464 | 6.4:-13578589 | MS.gene85783:CDS |
| GTCAATGCAGTTGTCAGCAT+AGG | 0.607551 | 6.4:+13579868 | None:intergenic |
| AAGGGTTAAAATACAAGATG+GGG | 0.610552 | 6.4:-13580688 | MS.gene85783:CDS |
| AAACATCGCAGTGACTATTG+TGG | 0.611836 | 6.4:-13578279 | MS.gene85783:CDS |
| ATTATAAGGAGGCTCTAGAA+GGG | 0.613050 | 6.4:-13579390 | MS.gene85783:CDS |
| GACACTGATAGTGATACAGA+TGG | 0.614810 | 6.4:-13581413 | MS.gene85783:CDS |
| GCTACTTTGAGTTACTTCCA+AGG | 0.617165 | 6.4:-13580657 | MS.gene85783:intron |
| GTTGATAAACAAGTTGCTAG+TGG | 0.617676 | 6.4:-13580831 | MS.gene85783:CDS |
| TGATAGTGATACAGATGGGG+TGG | 0.618742 | 6.4:-13581408 | MS.gene85783:CDS |
| CATGTCCATTTCCCTCATGA+CGG | 0.619225 | 6.4:+13579338 | None:intergenic |
| GATGATAGGGTAGTTGTCGG+AGG | 0.619255 | 6.4:+13578497 | None:intergenic |
| CATTGAACGAGATGAAGATG+AGG | 0.623154 | 6.4:-13579755 | MS.gene85783:CDS |
| ACATAGTGATACAGATGAGG+TGG | 0.623452 | 6.4:-13581459 | MS.gene85783:CDS |
| CCACTGATGGTGAATGTCAA+AGG | 0.624002 | 6.4:-13579253 | MS.gene85783:CDS |
| TATGGTTCCAACTTGCACAA+TGG | 0.627946 | 6.4:+13578597 | None:intergenic |
| TTTCACGGATCATCAGGCAA+GGG | 0.637022 | 6.4:-13580706 | MS.gene85783:CDS |
| CCTTTCTTACTTCAAACCCG+TGG | 0.639832 | 6.4:+13581117 | None:intergenic |
| CATTGCAAACACCATTACCA+TGG | 0.642035 | 6.4:+13581264 | None:intergenic |
| TATGGGGTGCCAAATAATGG+TGG | 0.646881 | 6.4:-13578539 | MS.gene85783:CDS |
| AATGGTGTTTGCAATGAGCA+AGG | 0.648235 | 6.4:-13581257 | MS.gene85783:CDS |
| GCTAGTGGTCTACATTCGCA+AGG | 0.649023 | 6.4:-13580816 | MS.gene85783:CDS |
| ATCAAATGGACAAAACGCAA+AGG | 0.651947 | 6.4:+13580879 | None:intergenic |
| AAAATGACCATGTTTCGTCG+AGG | 0.652304 | 6.4:-13579469 | MS.gene85783:CDS |
| ATGGTGTTTGCAATGAGCAA+GGG | 0.657603 | 6.4:-13581256 | MS.gene85783:CDS |
| TCTGTAGCAGTGTCAAATGG+TGG | 0.657609 | 6.4:-13578926 | MS.gene85783:CDS |
| TGATGGAGATGCAGACGGTG+TGG | 0.660310 | 6.4:-13581294 | MS.gene85783:CDS |
| ACACTGATAGTGATACAGAT+GGG | 0.663559 | 6.4:-13581412 | MS.gene85783:CDS |
| TGTCGTGTCTGAAGATCAAG+GGG | 0.668190 | 6.4:-13579128 | MS.gene85783:CDS |
| TGCCATGAAGTATGACAACA+TGG | 0.671427 | 6.4:-13579587 | MS.gene85783:CDS |
| TGAATGTCAAAGGTGCCCGT+AGG | 0.674674 | 6.4:-13579243 | MS.gene85783:CDS |
| CAATTAGTATGCAATAAGGA+GGG | 0.675920 | 6.4:-13581053 | MS.gene85783:CDS |
| TGTAGACGCTTTGAACGTAG+AGG | 0.677604 | 6.4:-13579634 | MS.gene85783:CDS |
| CAATGTTCCGAGTTATACAC+CGG | 0.682160 | 6.4:-13578423 | MS.gene85783:intron |
| CATTTGACACTGCTACAGAG+TGG | 0.682675 | 6.4:+13578930 | None:intergenic |
| GAGCGCAAGTGATTATAAGG+AGG | 0.683366 | 6.4:-13579401 | MS.gene85783:CDS |
| TGTTGCGAATGATCCACTGA+TGG | 0.687875 | 6.4:-13579266 | MS.gene85783:CDS |
| GACGGTGTGGAATTTAACCA+TGG | 0.688761 | 6.4:-13581281 | MS.gene85783:CDS |
| TGAGGGAAATGGACATGACG+AGG | 0.691164 | 6.4:-13579332 | MS.gene85783:CDS |
| CGTACTGATGGAGATGCAGA+CGG | 0.711480 | 6.4:-13581299 | MS.gene85783:CDS |
| ACATAGACTATTGAACGCAG+CGG | 0.718507 | 6.4:+13579438 | None:intergenic |
| CACTGATAGTGATACAGATG+GGG | 0.724418 | 6.4:-13581411 | MS.gene85783:CDS |
| TGTACATAGTGATACAGATG+AGG | 0.739686 | 6.4:-13581462 | MS.gene85783:CDS |
| AATTATGCAAGAAATCCACA+AGG | 0.743577 | 6.4:+13579959 | None:intergenic |
| GGATATGGAATTCAACACAG+AGG | 0.763384 | 6.4:-13581177 | MS.gene85783:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTTTAATATGCACTA+TGG | - | chr6.4:13581206-13581225 | MS.gene85783:CDS | 15.0% |
| !!! | ATTATTTTAATATGCACTAT+GGG | - | chr6.4:13581207-13581226 | MS.gene85783:CDS | 15.0% |
| !!! | TCATAAACTGTTTTAAATAT+AGG | + | chr6.4:13581435-13581454 | None:intergenic | 15.0% |
| !!! | TGAAATTGTATATGATATTT+TGG | - | chr6.4:13580762-13580781 | MS.gene85783:CDS | 15.0% |
| !! | AAAGGACTTATATAATTTCA+CGG | - | chr6.4:13579042-13579061 | MS.gene85783:intron | 20.0% |
| !! | AAAGTTTAAAGATGTCAAAA+AGG | - | chr6.4:13579957-13579976 | MS.gene85783:CDS | 20.0% |
| !!! | ATTTTCAAGGTTAATGTATT+TGG | - | chr6.4:13580045-13580064 | MS.gene85783:intron | 20.0% |
| !!! | TTATTTTAATATGCACTATG+GGG | - | chr6.4:13581208-13581227 | MS.gene85783:CDS | 20.0% |
| ! | AATTAAAGCACAAGCAAAAA+TGG | + | chr6.4:13579338-13579357 | None:intergenic | 25.0% |
| ! | ATATCCACTAAAAATGACAA+GGG | + | chr6.4:13579296-13579315 | None:intergenic | 25.0% |
| ! | CAGCAAATATACTATAACAA+AGG | + | chr6.4:13581032-13581051 | None:intergenic | 25.0% |
| ! | GATGGAAAAAATAAGAAGAA+TGG | - | chr6.4:13578740-13578759 | MS.gene85783:intron | 25.0% |
| ! | GGTGGGTAAAAAAAATTTAT+CGG | - | chr6.4:13579662-13579681 | MS.gene85783:CDS | 25.0% |
| ! | TAAACAATCAAAATACTCAC+CGG | + | chr6.4:13581362-13581381 | None:intergenic | 25.0% |
| ! | TATATCCACTAAAAATGACA+AGG | + | chr6.4:13579297-13579316 | None:intergenic | 25.0% |
| ! | TATCAACTTCACTCAATTTA+CGG | + | chr6.4:13578919-13578938 | None:intergenic | 25.0% |
| !! | CAAAAAAGATGTAGCTTTTT+CGG | - | chr6.4:13580068-13580087 | MS.gene85783:intron | 25.0% |
| !! | GACATCTTTAAACTTTTTAC+CGG | + | chr6.4:13579953-13579972 | None:intergenic | 25.0% |
| !! | TCAATGTTGATTGTGATATT+TGG | + | chr6.4:13580999-13581018 | None:intergenic | 25.0% |
| !! | TTTTTCATCATTACCTTCTT+GGG | + | chr6.4:13580277-13580296 | None:intergenic | 25.0% |
| !!! | GGTTCTAAATTTGTTTTCAA+AGG | - | chr6.4:13579387-13579406 | MS.gene85783:CDS | 25.0% |
| !!! | TTGTTTTGATTGTTGTAGAA+TGG | - | chr6.4:13581095-13581114 | MS.gene85783:CDS | 25.0% |
| !!! | TTTTTTCATCATTACCTTCT+TGG | + | chr6.4:13580278-13580297 | None:intergenic | 25.0% |
| AAAACTGATCCACCATTATT+TGG | + | chr6.4:13581236-13581255 | None:intergenic | 30.0% | |
| AAACAATAGAGACATACAAG+TGG | - | chr6.4:13579365-13579384 | MS.gene85783:CDS | 30.0% | |
| AACAAATACAAGCACTAGAA+AGG | - | chr6.4:13580956-13580975 | MS.gene85783:CDS | 30.0% | |
| AACAATAGAGACATACAAGT+GGG | - | chr6.4:13579366-13579385 | MS.gene85783:CDS | 30.0% | |
| AAGGGTTAAAATACAAGATG+GGG | - | chr6.4:13579075-13579094 | MS.gene85783:intron | 30.0% | |
| AATTATGCAAGAAATCCACA+AGG | + | chr6.4:13579807-13579826 | None:intergenic | 30.0% | |
| ACAAATACAAGCACTAGAAA+GGG | - | chr6.4:13580957-13580976 | MS.gene85783:CDS | 30.0% | |
| ACCTATAGAAAGAACAAGTA+TGG | - | chr6.4:13579265-13579284 | MS.gene85783:CDS | 30.0% | |
| AGATGATGATATAAGGGATA+TGG | - | chr6.4:13578571-13578590 | MS.gene85783:CDS | 30.0% | |
| AGTGTTAGAATGTGATGATA+GGG | + | chr6.4:13581282-13581301 | None:intergenic | 30.0% | |
| ATACTTGTTCTTTCTATAGG+TGG | + | chr6.4:13579266-13579285 | None:intergenic | 30.0% | |
| ATATAATTTCACGGATCATC+AGG | - | chr6.4:13579051-13579070 | MS.gene85783:intron | 30.0% | |
| ATCATTCGCAACAAATTTGT+TGG | + | chr6.4:13580490-13580509 | None:intergenic | 30.0% | |
| ATGTGACAGATGATGATATA+AGG | - | chr6.4:13578564-13578583 | MS.gene85783:CDS | 30.0% | |
| CAAGGGTTAAAATACAAGAT+GGG | - | chr6.4:13579074-13579093 | MS.gene85783:intron | 30.0% | |
| CAATTAGTATGCAATAAGGA+GGG | - | chr6.4:13578710-13578729 | MS.gene85783:intron | 30.0% | |
| GAGTTTACATTTACAGATGA+TGG | - | chr6.4:13579160-13579179 | MS.gene85783:CDS | 30.0% | |
| GATTCATTATCAGACTCAAT+AGG | + | chr6.4:13580672-13580691 | None:intergenic | 30.0% | |
| GTAAGAACATGTCATATCTT+GGG | - | chr6.4:13578971-13578990 | MS.gene85783:intron | 30.0% | |
| GTATCACTATGTACATCAAA+AGG | + | chr6.4:13578296-13578315 | None:intergenic | 30.0% | |
| GTATTGTTTGCAAAATACCA+CGG | - | chr6.4:13578629-13578648 | MS.gene85783:CDS | 30.0% | |
| GTTCTAATTGTAGAAATCCT+GGG | - | chr6.4:13580574-13580593 | MS.gene85783:intron | 30.0% | |
| TATCCACTAAAAATGACAAG+GGG | + | chr6.4:13579295-13579314 | None:intergenic | 30.0% | |
| TATTGTTTGCAAAATACCAC+GGG | - | chr6.4:13578630-13578649 | MS.gene85783:CDS | 30.0% | |
| TCAATTAGTATGCAATAAGG+AGG | - | chr6.4:13578709-13578728 | MS.gene85783:intron | 30.0% | |
| TCACTCAATTTACGGTAATT+AGG | + | chr6.4:13578911-13578930 | None:intergenic | 30.0% | |
| TCCATACTTGTTCTTTCTAT+AGG | + | chr6.4:13579269-13579288 | None:intergenic | 30.0% | |
| TGTAAGAACATGTCATATCT+TGG | - | chr6.4:13578970-13578989 | MS.gene85783:intron | 30.0% | |
| TGTGACAGATGATGATATAA+GGG | - | chr6.4:13578565-13578584 | MS.gene85783:CDS | 30.0% | |
| TGTTCTAATTGTAGAAATCC+TGG | - | chr6.4:13580573-13580592 | MS.gene85783:intron | 30.0% | |
| TTCTAACACCACACAAAAAA+TGG | + | chr6.4:13579723-13579742 | None:intergenic | 30.0% | |
| ! | ATTTTTCATGTCCAAAGTCA+CGG | + | chr6.4:13581127-13581146 | None:intergenic | 30.0% |
| ! | TTTTGGATGTTTGTCATACA+TGG | + | chr6.4:13579413-13579432 | None:intergenic | 30.0% |
| !! | ATTTTGACCTATCAAACAAC+AGG | - | chr6.4:13579641-13579660 | MS.gene85783:CDS | 30.0% |
| !! | TAAATTTGTTGCGAGTGATA+AGG | - | chr6.4:13580464-13580483 | MS.gene85783:intron | 30.0% |
| !!! | ACGCCTAGAAAACATTTTTT+GGG | - | chr6.4:13579183-13579202 | MS.gene85783:CDS | 30.0% |
| !!! | CATATCTTGGGTTTTTTGAT+GGG | - | chr6.4:13578983-13579002 | MS.gene85783:intron | 30.0% |
| !!! | TCATATCTTGGGTTTTTTGA+TGG | - | chr6.4:13578982-13579001 | MS.gene85783:intron | 30.0% |
| !!! | TGGAAACATTGTCATTTTCA+AGG | - | chr6.4:13580032-13580051 | MS.gene85783:intron | 30.0% |
| AAGATAAATAGCCGTCATGA+GGG | - | chr6.4:13580414-13580433 | MS.gene85783:intron | 35.0% | |
| ACTTCATGGCACAAATAATG+TGG | + | chr6.4:13580167-13580186 | None:intergenic | 35.0% | |
| AGGACTTGGGTTTATCAAAA+AGG | - | chr6.4:13579024-13579043 | MS.gene85783:intron | 35.0% | |
| ATCAAATGGACAAAACGCAA+AGG | + | chr6.4:13578887-13578906 | None:intergenic | 35.0% | |
| ATCACTCGCAACAAATTTAC+TGG | + | chr6.4:13580463-13580482 | None:intergenic | 35.0% | |
| ATCCATGTTGTCATACTTCA+TGG | + | chr6.4:13580181-13580200 | None:intergenic | 35.0% | |
| ATGTGAAGCGTGATTCTAAT+GGG | - | chr6.4:13578672-13578691 | MS.gene85783:intron | 35.0% | |
| ATTTAGTCTGCAACTTGTCA+AGG | + | chr6.4:13580098-13580117 | None:intergenic | 35.0% | |
| CAGTGTTAGAATGTGATGAT+AGG | + | chr6.4:13581283-13581302 | None:intergenic | 35.0% | |
| CTGAAAAGTTTGAATCTGAG+TGG | - | chr6.4:13579602-13579621 | MS.gene85783:CDS | 35.0% | |
| CTTCATGGCACAAATAATGT+GGG | + | chr6.4:13580166-13580185 | None:intergenic | 35.0% | |
| GAAGCTTCAAAGATATTCAC+CGG | - | chr6.4:13579931-13579950 | MS.gene85783:CDS | 35.0% | |
| GAGTTGTGTTTCCAAATACA+AGG | - | chr6.4:13579476-13579495 | MS.gene85783:CDS | 35.0% | |
| GCAAGGGTTAAAATACAAGA+TGG | - | chr6.4:13579073-13579092 | MS.gene85783:intron | 35.0% | |
| GCGTCAATTAGTATGCAATA+AGG | - | chr6.4:13578706-13578725 | MS.gene85783:intron | 35.0% | |
| GTATGACAAACATCCAAAAG+CGG | - | chr6.4:13579414-13579433 | MS.gene85783:CDS | 35.0% | |
| GTGGAATTTAACCATGGTAA+TGG | - | chr6.4:13578488-13578507 | MS.gene85783:CDS | 35.0% | |
| TAACACCATACCCAACATTA+TGG | + | chr6.4:13581187-13581206 | None:intergenic | 35.0% | |
| TAAGATAAATAGCCGTCATG+AGG | - | chr6.4:13580413-13580432 | MS.gene85783:intron | 35.0% | |
| TACGGTAATTAGGCATCAAA+TGG | + | chr6.4:13578901-13578920 | None:intergenic | 35.0% | |
| TATCATTACTCATAGACAGC+TGG | + | chr6.4:13580800-13580819 | None:intergenic | 35.0% | |
| TGTACATAGTGATACAGATG+AGG | - | chr6.4:13578301-13578320 | MS.gene85783:CDS | 35.0% | |
| TTAGAACAACATCTTGTCCT+TGG | + | chr6.4:13580561-13580580 | None:intergenic | 35.0% | |
| ! | AAAGTCTGATTTGCAAGAGA+TGG | - | chr6.4:13580211-13580230 | MS.gene85783:intron | 35.0% |
| ! | ACACTGATAGTGATACAGAT+GGG | - | chr6.4:13578351-13578370 | MS.gene85783:intron | 35.0% |
| ! | AGGTTTGACTATGAGTGTTT+TGG | - | chr6.4:13579220-13579239 | MS.gene85783:CDS | 35.0% |
| ! | CAAGTTGGAACCATAATGTT+GGG | - | chr6.4:13581174-13581193 | MS.gene85783:CDS | 35.0% |
| ! | CACTCAGATTCAAACTTTTC+AGG | + | chr6.4:13579604-13579623 | None:intergenic | 35.0% |
| ! | CTGCCCAAAAAATGTTTTCT+AGG | + | chr6.4:13579189-13579208 | None:intergenic | 35.0% |
| ! | GTTGATAAACAAGTTGCTAG+TGG | - | chr6.4:13578932-13578951 | MS.gene85783:CDS | 35.0% |
| ! | TAAGAGCGCAAGTGATTATA+AGG | - | chr6.4:13580359-13580378 | MS.gene85783:intron | 35.0% |
| ! | TTATCGGTTGAAGAGAATGT+GGG | - | chr6.4:13579678-13579697 | MS.gene85783:CDS | 35.0% |
| ! | TTTAGTGGATATAACCACCA+TGG | - | chr6.4:13579304-13579323 | MS.gene85783:CDS | 35.0% |
| ! | TTTATCGGTTGAAGAGAATG+TGG | - | chr6.4:13579677-13579696 | MS.gene85783:CDS | 35.0% |
| ! | TTTGAGTTACTTCCAAGGTA+AGG | - | chr6.4:13579111-13579130 | MS.gene85783:CDS | 35.0% |
| ! | TTTTTCATGTCCAAAGTCAC+GGG | + | chr6.4:13581126-13581145 | None:intergenic | 35.0% |
| !! | AATAAGGAGGGTGTTAATGA+TGG | - | chr6.4:13578722-13578741 | MS.gene85783:intron | 35.0% |
| !! | ATTATAAGGAGGCTCTAGAA+GGG | - | chr6.4:13580373-13580392 | MS.gene85783:intron | 35.0% |
| !! | CAAAAATGGTTGTTTCTCCA+TGG | + | chr6.4:13579324-13579343 | None:intergenic | 35.0% |
| !! | TGCTGAAAATTGTGTTGCTT+TGG | - | chr6.4:13581047-13581066 | MS.gene85783:CDS | 35.0% |
| !!! | AAACCCCTTGTCATTTTTAG+TGG | - | chr6.4:13579289-13579308 | MS.gene85783:CDS | 35.0% |
| !!! | GACGCCTAGAAAACATTTTT+TGG | - | chr6.4:13579182-13579201 | MS.gene85783:CDS | 35.0% |
| !!! | GGTTTTTTGATGGGTCAAAA+GGG | - | chr6.4:13578992-13579011 | MS.gene85783:intron | 35.0% |
| !!! | GTGTTGACTTTTTACTCCTA+CGG | + | chr6.4:13580539-13580558 | None:intergenic | 35.0% |
| !!! | TCAAACTTTTCAGGTGTACA+AGG | + | chr6.4:13579595-13579614 | None:intergenic | 35.0% |
| !!! | TGTTGACTTTTTACTCCTAC+GGG | + | chr6.4:13580538-13580557 | None:intergenic | 35.0% |
| AAAAGCGGTGATTACTGATG+GGG | - | chr6.4:13579429-13579448 | MS.gene85783:CDS | 40.0% | |
| AAAATGACCATGTTTCGTCG+AGG | - | chr6.4:13580294-13580313 | MS.gene85783:intron | 40.0% | |
| AAACATCGCAGTGACTATTG+TGG | - | chr6.4:13581484-13581503 | MS.gene85783:CDS | 40.0% | |
| AAATGACCATGTTTCGTCGA+GGG | - | chr6.4:13580295-13580314 | MS.gene85783:intron | 40.0% | |
| AAATGGACATGACGAGGATA+AGG | - | chr6.4:13580437-13580456 | MS.gene85783:intron | 40.0% | |
| AACAACGATGTTCGTACTGA+TGG | - | chr6.4:13578452-13578471 | MS.gene85783:CDS | 40.0% | |
| AACGCAAAGGAGCTAATTCA+TGG | + | chr6.4:13578874-13578893 | None:intergenic | 40.0% | |
| AATGGTGTTTGCAATGAGCA+AGG | - | chr6.4:13578506-13578525 | MS.gene85783:CDS | 40.0% | |
| ACATAGACTATTGAACGCAG+CGG | + | chr6.4:13580328-13580347 | None:intergenic | 40.0% | |
| ACATAGTGATACAGATGAGG+TGG | - | chr6.4:13578304-13578323 | MS.gene85783:CDS | 40.0% | |
| ACGACTTTGTTCGTACGATT+TGG | - | chr6.4:13578819-13578838 | MS.gene85783:CDS | 40.0% | |
| AGAACGACATCAATCTGTGA+AGG | - | chr6.4:13579739-13579758 | MS.gene85783:CDS | 40.0% | |
| AGATGTCAAAAAGGCGATAG+AGG | - | chr6.4:13579966-13579985 | MS.gene85783:CDS | 40.0% | |
| AGCTAATTCATGGTTGTGAG+AGG | + | chr6.4:13578864-13578883 | None:intergenic | 40.0% | |
| AGTTTGAATCTGAGTGGAAG+AGG | - | chr6.4:13579608-13579627 | MS.gene85783:CDS | 40.0% | |
| ATACTCACCGGTGTATAACT+CGG | + | chr6.4:13581350-13581369 | None:intergenic | 40.0% | |
| ATGGTGTTTGCAATGAGCAA+GGG | - | chr6.4:13578507-13578526 | MS.gene85783:CDS | 40.0% | |
| CAAAAGCGGTGATTACTGAT+GGG | - | chr6.4:13579428-13579447 | MS.gene85783:CDS | 40.0% | |
| CAAGGGAAAGAGAACTTTGA+TGG | - | chr6.4:13578524-13578543 | MS.gene85783:CDS | 40.0% | |
| CAATGTTCCGAGTTATACAC+CGG | - | chr6.4:13581340-13581359 | MS.gene85783:CDS | 40.0% | |
| CACTGGTATTACACGTAAGA+GGG | - | chr6.4:13580878-13580897 | MS.gene85783:CDS | 40.0% | |
| CATTGAACGAGATGAAGATG+AGG | - | chr6.4:13580008-13580027 | MS.gene85783:intron | 40.0% | |
| CATTGCAAACACCATTACCA+TGG | + | chr6.4:13578502-13578521 | None:intergenic | 40.0% | |
| CGCAGAACAATTAGTTCGAA+TGG | + | chr6.4:13578783-13578802 | None:intergenic | 40.0% | |
| CTCTTGCAAATCAGACTTTC+AGG | + | chr6.4:13580210-13580229 | None:intergenic | 40.0% | |
| GATGTGAAGCGTGATTCTAA+TGG | - | chr6.4:13578671-13578690 | MS.gene85783:intron | 40.0% | |
| GCACAAATAATGTGGGAACA+TGG | + | chr6.4:13580159-13580178 | None:intergenic | 40.0% | |
| GCTAATTCATGGTTGTGAGA+GGG | + | chr6.4:13578863-13578882 | None:intergenic | 40.0% | |
| GGAGTAAAAAGTCAACACCA+AGG | - | chr6.4:13580541-13580560 | MS.gene85783:intron | 40.0% | |
| GGATATGGAATTCAACACAG+AGG | - | chr6.4:13578586-13578605 | MS.gene85783:CDS | 40.0% | |
| GTTTGAATCTGAGTGGAAGA+GGG | - | chr6.4:13579609-13579628 | MS.gene85783:CDS | 40.0% | |
| TATCAGTATCAGCCTTACCT+TGG | + | chr6.4:13579126-13579145 | None:intergenic | 40.0% | |
| TATGAGTGCGTTGAAGAATG+TGG | - | chr6.4:13581450-13581469 | MS.gene85783:CDS | 40.0% | |
| TATGGTTCCAACTTGCACAA+TGG | + | chr6.4:13581169-13581188 | None:intergenic | 40.0% | |
| TGACCTATCAAACAACAGGT+GGG | - | chr6.4:13579645-13579664 | MS.gene85783:CDS | 40.0% | |
| TGATAAACCCAAGTCCTTCA+TGG | + | chr6.4:13579021-13579040 | None:intergenic | 40.0% | |
| TGCCATGAAGTATGACAACA+TGG | - | chr6.4:13580176-13580195 | MS.gene85783:intron | 40.0% | |
| TGGAACCATAATGTTGGGTA+TGG | - | chr6.4:13581179-13581198 | MS.gene85783:CDS | 40.0% | |
| TGTGATGATAGGGTAGTTGT+CGG | + | chr6.4:13581272-13581291 | None:intergenic | 40.0% | |
| TTCATCATTACCTTCTTGGG+AGG | + | chr6.4:13580274-13580293 | None:intergenic | 40.0% | |
| TTCGAATGGTTAGCGTAGAT+CGG | + | chr6.4:13578769-13578788 | None:intergenic | 40.0% | |
| TTGACCTATCAAACAACAGG+TGG | - | chr6.4:13579644-13579663 | MS.gene85783:CDS | 40.0% | |
| TTTGGGCAGATTCTACTAGT+AGG | - | chr6.4:13579200-13579219 | MS.gene85783:CDS | 40.0% | |
| ! | CACTGATAGTGATACAGATG+GGG | - | chr6.4:13578352-13578371 | MS.gene85783:intron | 40.0% |
| ! | GACACTGATAGTGATACAGA+TGG | - | chr6.4:13578350-13578369 | MS.gene85783:intron | 40.0% |
| ! | GCAAGTTGGAACCATAATGT+TGG | - | chr6.4:13581173-13581192 | MS.gene85783:CDS | 40.0% |
| ! | GCTACTTTGAGTTACTTCCA+AGG | - | chr6.4:13579106-13579125 | MS.gene85783:CDS | 40.0% |
| ! | TTACCCACCTGTTGTTTGAT+AGG | + | chr6.4:13579651-13579670 | None:intergenic | 40.0% |
| !! | AAATGGTTGTTTCTCCATGG+TGG | + | chr6.4:13579321-13579340 | None:intergenic | 40.0% |
| !! | GATTATAAGGAGGCTCTAGA+AGG | - | chr6.4:13580372-13580391 | MS.gene85783:intron | 40.0% |
| !! | TTTTTGATGGGTCAAAAGGG+TGG | - | chr6.4:13578995-13579014 | MS.gene85783:intron | 40.0% |
| !!! | ATGCGAGACCATTTTTTGTG+TGG | - | chr6.4:13579712-13579731 | MS.gene85783:CDS | 40.0% |
| !!! | GGGTTTTTTGATGGGTCAAA+AGG | - | chr6.4:13578991-13579010 | MS.gene85783:intron | 40.0% |
| AAGACAGCCATTGTGCAAGT+TGG | - | chr6.4:13581159-13581178 | MS.gene85783:CDS | 45.0% | |
| AATAGCCGTCATGAGGGAAA+TGG | - | chr6.4:13580420-13580439 | MS.gene85783:intron | 45.0% | |
| AATGACCATGTTTCGTCGAG+GGG | - | chr6.4:13580296-13580315 | MS.gene85783:intron | 45.0% | |
| ACACCAATTCCAGCAAGTTC+TGG | + | chr6.4:13580618-13580637 | None:intergenic | 45.0% | |
| ACTGGAACACACAATGTTCC+TGG | - | chr6.4:13581311-13581330 | MS.gene85783:CDS | 45.0% | |
| AGCATTTCGATGCAAATGCC+AGG | + | chr6.4:13579515-13579534 | None:intergenic | 45.0% | |
| ATGATAGGGTAGTTGTCGGA+GGG | + | chr6.4:13581268-13581287 | None:intergenic | 45.0% | |
| ATTTCACGGATCATCAGGCA+AGG | - | chr6.4:13579056-13579075 | MS.gene85783:intron | 45.0% | |
| CAAAGGCGATGCCTTGTATT+TGG | + | chr6.4:13579490-13579509 | None:intergenic | 45.0% | |
| CACTCTGTAGCAGTGTCAAA+TGG | - | chr6.4:13580834-13580853 | MS.gene85783:CDS | 45.0% | |
| CATGTCCATTTCCCTCATGA+CGG | + | chr6.4:13580428-13580447 | None:intergenic | 45.0% | |
| CATTTGACACTGCTACAGAG+TGG | + | chr6.4:13580836-13580855 | None:intergenic | 45.0% | |
| CCAAAAGCGGTGATTACTGA+TGG | - | chr6.4:13579427-13579446 | MS.gene85783:CDS | 45.0% | |
| CCTTTCTTACTTCAAACCCG+TGG | + | chr6.4:13578649-13578668 | None:intergenic | 45.0% | |
| CCTTTGACATTCACCATCAG+TGG | + | chr6.4:13580513-13580532 | None:intergenic | 45.0% | |
| GAAATCCTGGGCACACAATA+CGG | - | chr6.4:13580586-13580605 | MS.gene85783:intron | 45.0% | |
| GAACGAGATGAAGATGAGGA+TGG | - | chr6.4:13580012-13580031 | MS.gene85783:intron | 45.0% | |
| GACGGTGTGGAATTTAACCA+TGG | - | chr6.4:13578482-13578501 | MS.gene85783:CDS | 45.0% | |
| GAGCGCAAGTGATTATAAGG+AGG | - | chr6.4:13580362-13580381 | MS.gene85783:intron | 45.0% | |
| GTCAATGCAGTTGTCAGCAT+AGG | + | chr6.4:13579898-13579917 | None:intergenic | 45.0% | |
| GTGTCGTGTCTGAAGATCAA+GGG | - | chr6.4:13580634-13580653 | MS.gene85783:intron | 45.0% | |
| TCTAACACTGCTCTGCATAC+TGG | - | chr6.4:13581293-13581312 | MS.gene85783:CDS | 45.0% | |
| TCTGTAGCAGTGTCAAATGG+TGG | - | chr6.4:13580837-13580856 | MS.gene85783:CDS | 45.0% | |
| TGTCGTGTCTGAAGATCAAG+GGG | - | chr6.4:13580635-13580654 | MS.gene85783:intron | 45.0% | |
| TGTTGCGAATGATCCACTGA+TGG | - | chr6.4:13580497-13580516 | MS.gene85783:intron | 45.0% | |
| TTTCACGGATCATCAGGCAA+GGG | - | chr6.4:13579057-13579076 | MS.gene85783:intron | 45.0% | |
| ! | CACTATGGGGTGCCAAATAA+TGG | - | chr6.4:13581221-13581240 | MS.gene85783:CDS | 45.0% |
| ! | CCACGGGTTTGAAGTAAGAA+AGG | - | chr6.4:13578646-13578665 | MS.gene85783:CDS | 45.0% |
| ! | CCACTGATGGTGAATGTCAA+AGG | - | chr6.4:13580510-13580529 | MS.gene85783:intron | 45.0% |
| ! | CCATCAGTAATCACCGCTTT+TGG | + | chr6.4:13579430-13579449 | None:intergenic | 45.0% |
| ! | CGAGATGTTGAGAAAAGCAC+TGG | - | chr6.4:13580861-13580880 | MS.gene85783:CDS | 45.0% |
| ! | GCACTGGTATTACACGTAAG+AGG | - | chr6.4:13580877-13580896 | MS.gene85783:CDS | 45.0% |
| ! | TATGGGGTGCCAAATAATGG+TGG | - | chr6.4:13581224-13581243 | MS.gene85783:CDS | 45.0% |
| ! | TGATAGTGATACAGATGGGG+TGG | - | chr6.4:13578355-13578374 | MS.gene85783:intron | 45.0% |
| ! | TGTAGACGCTTTGAACGTAG+AGG | - | chr6.4:13580129-13580148 | MS.gene85783:intron | 45.0% |
| !! | TGTCCAGAACTTGCTGGAAT+TGG | - | chr6.4:13580612-13580631 | MS.gene85783:intron | 45.0% |
| !!! | CCACAAGGCTGTTTTTGTGT+CGG | + | chr6.4:13579792-13579811 | None:intergenic | 45.0% |
| AATGGTGTGACCCGTGACTT+TGG | - | chr6.4:13581113-13581132 | MS.gene85783:CDS | 50.0% | |
| CCGACACAAAAACAGCCTTG+TGG | - | chr6.4:13579789-13579808 | MS.gene85783:CDS | 50.0% | |
| CTCGGAACATTGTGTGTTCC+AGG | + | chr6.4:13581332-13581351 | None:intergenic | 50.0% | |
| GATGATAGGGTAGTTGTCGG+AGG | + | chr6.4:13581269-13581288 | None:intergenic | 50.0% | |
| GCTAGTGGTCTACATTCGCA+AGG | - | chr6.4:13578947-13578966 | MS.gene85783:CDS | 50.0% | |
| GTAGTTGTCGGAGGGAATTG+TGG | + | chr6.4:13581260-13581279 | None:intergenic | 50.0% | |
| GTCTGAAGATCAAGGGGAGA+AGG | - | chr6.4:13580641-13580660 | MS.gene85783:intron | 50.0% | |
| TCGTCATTTGCCTCCCAAGA+AGG | - | chr6.4:13580261-13580280 | MS.gene85783:intron | 50.0% | |
| TGAGGGAAATGGACATGACG+AGG | - | chr6.4:13580431-13580450 | MS.gene85783:intron | 50.0% | |
| ! | CGTACTGATGGAGATGCAGA+CGG | - | chr6.4:13578464-13578483 | MS.gene85783:CDS | 50.0% |
| ! | GGTGTCGTGTCTGAAGATCA+AGG | - | chr6.4:13580633-13580652 | MS.gene85783:intron | 50.0% |
| !! | TGAATGTCAAAGGTGCCCGT+AGG | - | chr6.4:13580520-13580539 | MS.gene85783:intron | 50.0% |
| AAGGGTGGCCATGAAGGACT+TGG | - | chr6.4:13579010-13579029 | MS.gene85783:intron | 55.0% | |
| AAGTGCCCCTCGACGAAACA+TGG | + | chr6.4:13580304-13580323 | None:intergenic | 55.0% | |
| AGGGTGGCCATGAAGGACTT+GGG | - | chr6.4:13579011-13579030 | MS.gene85783:intron | 55.0% | |
| GATGCAAATGCCAGGCGCAA+AGG | + | chr6.4:13579507-13579526 | None:intergenic | 55.0% | |
| GGTCAAAAGGGTGGCCATGA+AGG | - | chr6.4:13579004-13579023 | MS.gene85783:intron | 55.0% | |
| TGATGGAGATGCAGACGGTG+TGG | - | chr6.4:13578469-13578488 | MS.gene85783:CDS | 55.0% | |
| CACGTCCGTATTGTGTGCCC+AGG | + | chr6.4:13580594-13580613 | None:intergenic | 60.0% | |
| CGGACGTGTCCAGAACTTGC+TGG | - | chr6.4:13580606-13580625 | MS.gene85783:intron | 60.0% | |
| !! | CAAGGCATCGCCTTTGCGCC+TGG | - | chr6.4:13579494-13579513 | MS.gene85783:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 13578266 | 13581519 | 13578266 | ID=MS.gene85783 |
| chr6.4 | mRNA | 13578266 | 13581519 | 13578266 | ID=MS.gene85783.t1;Parent=MS.gene85783 |
| chr6.4 | exon | 13580658 | 13581519 | 13580658 | ID=MS.gene85783.t1.exon1;Parent=MS.gene85783.t1 |
| chr6.4 | CDS | 13580658 | 13581519 | 13580658 | ID=cds.MS.gene85783.t1;Parent=MS.gene85783.t1 |
| chr6.4 | exon | 13579081 | 13580021 | 13579081 | ID=MS.gene85783.t1.exon2;Parent=MS.gene85783.t1 |
| chr6.4 | CDS | 13579081 | 13580021 | 13579081 | ID=cds.MS.gene85783.t1;Parent=MS.gene85783.t1 |
| chr6.4 | exon | 13578763 | 13578984 | 13578763 | ID=MS.gene85783.t1.exon3;Parent=MS.gene85783.t1 |
| chr6.4 | CDS | 13578763 | 13578984 | 13578763 | ID=cds.MS.gene85783.t1;Parent=MS.gene85783.t1 |
| chr6.4 | exon | 13578424 | 13578672 | 13578424 | ID=MS.gene85783.t1.exon4;Parent=MS.gene85783.t1 |
| chr6.4 | CDS | 13578424 | 13578672 | 13578424 | ID=cds.MS.gene85783.t1;Parent=MS.gene85783.t1 |
| chr6.4 | exon | 13578266 | 13578337 | 13578266 | ID=MS.gene85783.t1.exon5;Parent=MS.gene85783.t1 |
| chr6.4 | CDS | 13578266 | 13578337 | 13578266 | ID=cds.MS.gene85783.t1;Parent=MS.gene85783.t1 |
| Gene Sequence |
| Protein sequence |
