Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060268.t1 | PNX73002.1 | 42.7 | 843 | 180 | 8 | 109 | 737 | 1 | 754 | 1.00E-160 | 577.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060268.t1 | Q9SZL8 | 28.9 | 194 | 130 | 3 | 265 | 453 | 448 | 638 | 9.9e-16 | 87.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060268.t1 | A0A2K3L384 | 42.7 | 843 | 180 | 8 | 109 | 737 | 1 | 754 | 7.2e-161 | 577.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene060268.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060268 | MS.gene067728 | 0.900453 | 7.21E-78 | -1.69E-46 |
| MS.gene060268 | MS.gene85783 | 0.962595 | 4.58E-121 | -1.69E-46 |
| MS.gene060268 | MS.gene88158 | 0.807428 | 5.08E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060268.t1 | MTR_3g080590 | 88.387 | 155 | 18 | 0 | 1 | 155 | 1 | 155 | 1.06e-79 | 253 |
| MS.gene060268.t1 | MTR_7g446520 | 46.114 | 193 | 89 | 2 | 98 | 290 | 81 | 258 | 1.18e-44 | 164 |
| MS.gene060268.t1 | MTR_0645s0010 | 67.593 | 108 | 29 | 3 | 288 | 395 | 24 | 125 | 1.19e-35 | 131 |
| MS.gene060268.t1 | MTR_7g446480 | 52.679 | 112 | 53 | 0 | 179 | 290 | 140 | 251 | 1.61e-31 | 125 |
| MS.gene060268.t1 | MTR_7g028855 | 45.395 | 152 | 78 | 2 | 98 | 245 | 113 | 263 | 4.62e-30 | 124 |
| MS.gene060268.t1 | MTR_7g446510 | 51.786 | 112 | 54 | 0 | 179 | 290 | 155 | 266 | 7.70e-29 | 118 |
| MS.gene060268.t1 | MTR_1g070355 | 31.818 | 176 | 117 | 2 | 105 | 277 | 74 | 249 | 7.26e-21 | 97.8 |
| MS.gene060268.t1 | MTR_5g076070 | 28.415 | 183 | 116 | 3 | 85 | 264 | 45 | 215 | 1.54e-20 | 93.2 |
| MS.gene060268.t1 | MTR_6g022080 | 27.439 | 164 | 116 | 1 | 104 | 264 | 84 | 247 | 5.09e-18 | 84.7 |
| MS.gene060268.t1 | MTR_8g035530 | 46.753 | 77 | 39 | 1 | 92 | 168 | 1 | 75 | 1.38e-16 | 75.5 |
| MS.gene060268.t1 | MTR_8g468460 | 40.000 | 100 | 57 | 2 | 309 | 408 | 9 | 105 | 2.13e-13 | 67.4 |
| MS.gene060268.t1 | MTR_0402s0040 | 29.885 | 174 | 117 | 5 | 108 | 278 | 29 | 200 | 3.15e-13 | 73.2 |
| MS.gene060268.t1 | MTR_3g450850 | 29.651 | 172 | 109 | 4 | 111 | 270 | 53 | 224 | 7.80e-13 | 71.2 |
| MS.gene060268.t1 | MTR_4g035820 | 29.121 | 182 | 120 | 4 | 111 | 285 | 81 | 260 | 2.75e-12 | 70.9 |
| MS.gene060268.t1 | MTR_6g051425 | 28.261 | 184 | 121 | 5 | 112 | 287 | 24 | 204 | 4.63e-12 | 68.6 |
| MS.gene060268.t1 | MTR_1g008290 | 31.034 | 116 | 75 | 2 | 173 | 288 | 21 | 131 | 8.62e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060268.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 5.25e-19 | 92.0 |
| MS.gene060268.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 5.38e-19 | 92.0 |
| MS.gene060268.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 6.07e-19 | 92.0 |
| MS.gene060268.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 6.74e-19 | 92.0 |
| MS.gene060268.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 6.74e-19 | 92.0 |
| MS.gene060268.t1 | AT4G38180 | 29.469 | 207 | 132 | 5 | 252 | 453 | 441 | 638 | 1.94e-18 | 90.9 |
| MS.gene060268.t1 | AT4G38180 | 30.337 | 267 | 170 | 9 | 33 | 290 | 3 | 262 | 1.14e-15 | 82.0 |
| MS.gene060268.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.66e-18 | 89.7 |
| MS.gene060268.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.66e-18 | 89.7 |
| MS.gene060268.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.66e-18 | 89.7 |
| MS.gene060268.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.66e-18 | 89.7 |
| MS.gene060268.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.66e-18 | 89.7 |
| MS.gene060268.t1 | AT3G22170 | 27.679 | 224 | 151 | 5 | 288 | 508 | 461 | 676 | 3.11e-16 | 84.0 |
| MS.gene060268.t1 | AT3G22170 | 27.679 | 224 | 151 | 5 | 288 | 508 | 461 | 676 | 3.11e-16 | 84.0 |
| MS.gene060268.t1 | AT2G27110 | 26.829 | 246 | 158 | 8 | 250 | 491 | 386 | 613 | 2.04e-15 | 81.3 |
| MS.gene060268.t1 | AT2G27110 | 26.829 | 246 | 158 | 8 | 250 | 491 | 386 | 613 | 2.04e-15 | 81.3 |
| MS.gene060268.t1 | AT2G27110 | 26.829 | 246 | 158 | 8 | 250 | 491 | 241 | 468 | 2.14e-15 | 80.9 |
| MS.gene060268.t1 | AT4G38170 | 26.425 | 193 | 136 | 3 | 260 | 449 | 210 | 399 | 2.17e-15 | 80.5 |
| MS.gene060268.t1 | AT1G10240 | 30.508 | 177 | 108 | 6 | 111 | 276 | 54 | 226 | 2.63e-12 | 70.9 |
| MS.gene060268.t1 | AT1G10240 | 30.508 | 177 | 108 | 6 | 111 | 276 | 54 | 226 | 2.63e-12 | 70.9 |
| MS.gene060268.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 9.11e-12 | 69.3 |
| MS.gene060268.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 9.11e-12 | 69.3 |
| MS.gene060268.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 343 | 506 | 1.21e-11 | 68.9 |
| MS.gene060268.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 1.22e-11 | 68.9 |
| MS.gene060268.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 1.30e-11 | 68.9 |
| MS.gene060268.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 1.30e-11 | 68.9 |
| MS.gene060268.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 414 | 577 | 1.40e-11 | 68.6 |
| MS.gene060268.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 3.48e-11 | 67.4 |
| MS.gene060268.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 3.54e-11 | 67.4 |
| MS.gene060268.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 3.54e-11 | 67.4 |
| MS.gene060268.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 9.32e-11 | 65.9 |
Find 142 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACTGATCCACCATTATT+TGG | 0.155571 | 6.4:+13552640 | None:intergenic |
| TCAATGTTGATTGTGATATT+TGG | 0.171428 | 6.4:+13552877 | None:intergenic |
| CTCTTGCAAATCAGACTTTC+AGG | 0.192125 | 6.4:+13553666 | None:intergenic |
| TCACTCAATTTACGGTAATT+AGG | 0.235603 | 6.4:+13554965 | None:intergenic |
| CCCATAGTTTCTCAATGTTT+TGG | 0.242135 | 6.4:+13552365 | None:intergenic |
| TATCAACTTCACTCAATTTA+CGG | 0.276736 | 6.4:+13554957 | None:intergenic |
| ATCACTCGCAACAAATTTAC+TGG | 0.280329 | 6.4:+13553413 | None:intergenic |
| TAACACCATACCCAACATTA+TGG | 0.313783 | 6.4:+13552689 | None:intergenic |
| AGGACTTGGGTTTATCAAAA+AGG | 0.326599 | 6.4:-13554849 | MS.gene060268:CDS |
| CAGTGTTAGAATGTGATGAT+AGG | 0.338987 | 6.4:+13552593 | None:intergenic |
| TGATAAACCCAAGTCCTTCA+TGG | 0.346028 | 6.4:+13554855 | None:intergenic |
| AGATGATGATATAAGGGATA+TGG | 0.347376 | 6.4:-13555302 | MS.gene060268:CDS |
| ACGACTTTGTTCGTACGATT+TGG | 0.356788 | 6.4:-13555054 | MS.gene060268:CDS |
| ACACCAATTCCAGCAAGTTC+TGG | 0.360337 | 6.4:+13553258 | None:intergenic |
| ATGTGACAGATGATGATATA+AGG | 0.367162 | 6.4:-13555309 | MS.gene060268:CDS |
| CTCGGAACATTGTGTGTTCC+AGG | 0.370631 | 6.4:+13552544 | None:intergenic |
| TAAGAGCGCAAGTGATTATA+AGG | 0.371814 | 6.4:-13553514 | MS.gene060268:CDS |
| TGTAAGAACATGTCATATCT+TGG | 0.387474 | 6.4:-13554903 | MS.gene060268:CDS |
| TGTTCTAATTGTAGAAATCC+TGG | 0.392101 | 6.4:-13553300 | MS.gene060268:CDS |
| CACTATGGGGTGCCAAATAA+TGG | 0.393131 | 6.4:-13552652 | MS.gene060268:CDS |
| ATCCATGTTGTCATACTTCA+TGG | 0.394339 | 6.4:+13553695 | None:intergenic |
| ACTGGAACACACAATGTTCC+TGG | 0.398163 | 6.4:-13552562 | MS.gene060268:CDS |
| ATCATTCGCAACAAATTTGT+TGG | 0.403036 | 6.4:+13553386 | None:intergenic |
| TCTAACACTGCTCTGCATAC+TGG | 0.407068 | 6.4:-13552580 | MS.gene060268:CDS |
| ATATAATTTCACGGATCATC+AGG | 0.409639 | 6.4:-13554822 | MS.gene060268:CDS |
| GATTATAAGGAGGCTCTAGA+AGG | 0.413898 | 6.4:-13553501 | MS.gene060268:CDS |
| GATTCATTATCAGACTCAAT+AGG | 0.414121 | 6.4:+13553204 | None:intergenic |
| GCACTGGTATTACACGTAAG+AGG | 0.418801 | 6.4:-13552996 | MS.gene060268:CDS |
| AACAAATACAAGCACTAGAA+AGG | 0.422563 | 6.4:-13552917 | MS.gene060268:CDS |
| TGTCCAGAACTTGCTGGAAT+TGG | 0.422787 | 6.4:-13553261 | MS.gene060268:CDS |
| AAAGTTTAAAGATGTCAAAA+AGG | 0.436388 | 6.4:-13553916 | MS.gene060268:CDS |
| TACGGTAATTAGGCATCAAA+TGG | 0.442752 | 6.4:+13554975 | None:intergenic |
| CGCAGAACAATTAGTTCGAA+TGG | 0.445789 | 6.4:+13555093 | None:intergenic |
| AAGGGTGGCCATGAAGGACT+TGG | 0.449428 | 6.4:-13554863 | MS.gene060268:CDS |
| TAAATTTGTTGCGAGTGATA+AGG | 0.460501 | 6.4:-13553409 | MS.gene060268:CDS |
| AAATGGACATGACGAGGATA+AGG | 0.462491 | 6.4:-13553436 | MS.gene060268:CDS |
| GTAAGAACATGTCATATCTT+GGG | 0.464989 | 6.4:-13554902 | MS.gene060268:CDS |
| GCGTCAATTAGTATGCAATA+AGG | 0.467578 | 6.4:-13555167 | MS.gene060268:CDS |
| AACGCAAAGGAGCTAATTCA+TGG | 0.469712 | 6.4:+13555002 | None:intergenic |
| AGTGTTAGAATGTGATGATA+GGG | 0.470693 | 6.4:+13552594 | None:intergenic |
| TTCGAATGGTTAGCGTAGAT+CGG | 0.471186 | 6.4:+13555107 | None:intergenic |
| AATAGCCGTCATGAGGGAAA+TGG | 0.477370 | 6.4:-13553453 | MS.gene060268:CDS |
| CAAGGGAAAGAGAACTTTGA+TGG | 0.478759 | 6.4:-13555349 | MS.gene060268:CDS |
| CGGACGTGTCCAGAACTTGC+TGG | 0.483560 | 6.4:-13553267 | MS.gene060268:CDS |
| AAAGGACTTATATAATTTCA+CGG | 0.493961 | 6.4:-13554831 | MS.gene060268:CDS |
| GAAATCCTGGGCACACAATA+CGG | 0.497533 | 6.4:-13553287 | MS.gene060268:CDS |
| CACTCTGTAGCAGTGTCAAA+TGG | 0.499398 | 6.4:-13553039 | MS.gene060268:CDS |
| ATGTGAAGCGTGATTCTAAT+GGG | 0.504223 | 6.4:-13555201 | MS.gene060268:CDS |
| AATGGTGTGACCCGTGACTT+TGG | 0.505092 | 6.4:-13552760 | MS.gene060268:CDS |
| GCAAGGGTTAAAATACAAGA+TGG | 0.508614 | 6.4:-13554800 | MS.gene060268:CDS |
| GTATCACTATGTACATCAAA+AGG | 0.509968 | 6.4:+13555580 | None:intergenic |
| GGTCAAAAGGGTGGCCATGA+AGG | 0.510809 | 6.4:-13554869 | MS.gene060268:CDS |
| CCACGGGTTTGAAGTAAGAA+AGG | 0.512169 | 6.4:-13555227 | MS.gene060268:CDS |
| TTAGAACAACATCTTGTCCT+TGG | 0.513299 | 6.4:+13553315 | None:intergenic |
| TGTGATGATAGGGTAGTTGT+CGG | 0.517812 | 6.4:+13552604 | None:intergenic |
| ATTTAGTCTGCAACTTGTCA+AGG | 0.524883 | 6.4:+13553778 | None:intergenic |
| CAAGGGTTAAAATACAAGAT+GGG | 0.527779 | 6.4:-13554799 | MS.gene060268:CDS |
| AACAACGATGTTCGTACTGA+TGG | 0.529175 | 6.4:-13555421 | MS.gene060268:CDS |
| AAAGTCTGATTTGCAAGAGA+TGG | 0.531904 | 6.4:-13553662 | MS.gene060268:CDS |
| GATGTGAAGCGTGATTCTAA+TGG | 0.532287 | 6.4:-13555202 | MS.gene060268:CDS |
| GTTCTAATTGTAGAAATCCT+GGG | 0.533951 | 6.4:-13553299 | MS.gene060268:CDS |
| AAGTGCCCCTCGACGAAACA+TGG | 0.534361 | 6.4:+13553572 | None:intergenic |
| CACGTCCGTATTGTGTGCCC+AGG | 0.534840 | 6.4:+13553282 | None:intergenic |
| ACAAATACAAGCACTAGAAA+GGG | 0.535750 | 6.4:-13552916 | MS.gene060268:CDS |
| GTAGTTGTCGGAGGGAATTG+TGG | 0.539742 | 6.4:+13552616 | None:intergenic |
| AATAAGGAGGGTGTTAATGA+TGG | 0.543414 | 6.4:-13555151 | MS.gene060268:CDS |
| AAGACAGCCATTGTGCAAGT+TGG | 0.545484 | 6.4:-13552714 | MS.gene060268:CDS |
| AGCTAATTCATGGTTGTGAG+AGG | 0.545517 | 6.4:+13555012 | None:intergenic |
| ACTTCATGGCACAAATAATG+TGG | 0.547507 | 6.4:+13553709 | None:intergenic |
| TCGTCATTTGCCTCCCAAGA+AGG | 0.555407 | 6.4:-13553612 | MS.gene060268:CDS |
| CACTGGTATTACACGTAAGA+GGG | 0.559146 | 6.4:-13552995 | MS.gene060268:CDS |
| GGTGTCGTGTCTGAAGATCA+AGG | 0.560464 | 6.4:-13553240 | MS.gene060268:CDS |
| CGAGATGTTGAGAAAAGCAC+TGG | 0.563759 | 6.4:-13553012 | MS.gene060268:CDS |
| TTCATCATTACCTTCTTGGG+AGG | 0.565482 | 6.4:+13553602 | None:intergenic |
| GTCTGAAGATCAAGGGGAGA+AGG | 0.567087 | 6.4:-13553232 | MS.gene060268:CDS |
| TATTGTTTGCAAAATACCAC+GGG | 0.573778 | 6.4:-13555243 | MS.gene060268:CDS |
| CCTTTGACATTCACCATCAG+TGG | 0.574175 | 6.4:+13553363 | None:intergenic |
| GTGGAATTTAACCATGGTAA+TGG | 0.576772 | 6.4:-13555385 | MS.gene060268:CDS |
| GCACAAATAATGTGGGAACA+TGG | 0.578248 | 6.4:+13553717 | None:intergenic |
| TGTGACAGATGATGATATAA+GGG | 0.581249 | 6.4:-13555308 | MS.gene060268:CDS |
| AAATGACCATGTTTCGTCGA+GGG | 0.581274 | 6.4:-13553578 | MS.gene060268:CDS |
| GTGTCGTGTCTGAAGATCAA+GGG | 0.581492 | 6.4:-13553239 | MS.gene060268:CDS |
| GCTAATTCATGGTTGTGAGA+GGG | 0.581523 | 6.4:+13555013 | None:intergenic |
| TCAATTAGTATGCAATAAGG+AGG | 0.584633 | 6.4:-13555164 | MS.gene060268:CDS |
| AATGACCATGTTTCGTCGAG+GGG | 0.585541 | 6.4:-13553577 | MS.gene060268:CDS |
| GCAAGTTGGAACCATAATGT+TGG | 0.585606 | 6.4:-13552700 | MS.gene060268:CDS |
| TAAGATAAATAGCCGTCATG+AGG | 0.585792 | 6.4:-13553460 | MS.gene060268:CDS |
| AGGGTGGCCATGAAGGACTT+GGG | 0.586883 | 6.4:-13554862 | MS.gene060268:CDS |
| GAAGCTTCAAAGATATTCAC+CGG | 0.587720 | 6.4:-13553942 | MS.gene060268:CDS |
| AAGATAAATAGCCGTCATGA+GGG | 0.587755 | 6.4:-13553459 | MS.gene060268:CDS |
| ATACTCACCGGTGTATAACT+CGG | 0.588936 | 6.4:+13552526 | None:intergenic |
| ATGATAGGGTAGTTGTCGGA+GGG | 0.591320 | 6.4:+13552608 | None:intergenic |
| ATTTCACGGATCATCAGGCA+AGG | 0.592596 | 6.4:-13554817 | MS.gene060268:CDS |
| TGGAACCATAATGTTGGGTA+TGG | 0.594448 | 6.4:-13552694 | MS.gene060268:CDS |
| CTTCATGGCACAAATAATGT+GGG | 0.594948 | 6.4:+13553710 | None:intergenic |
| TATGAGTGCGTTGAAGAATG+TGG | 0.597255 | 6.4:-13552423 | MS.gene060268:CDS |
| GAACGAGATGAAGATGAGGA+TGG | 0.598765 | 6.4:-13553861 | MS.gene060268:CDS |
| GTATTGTTTGCAAAATACCA+CGG | 0.599210 | 6.4:-13555244 | MS.gene060268:CDS |
| CAAGTTGGAACCATAATGTT+GGG | 0.599464 | 6.4:-13552699 | MS.gene060268:CDS |
| GTCAATGCAGTTGTCAGCAT+AGG | 0.607551 | 6.4:+13553978 | None:intergenic |
| AAGGGTTAAAATACAAGATG+GGG | 0.610552 | 6.4:-13554798 | MS.gene060268:CDS |
| AAACATCGCAGTGACTATTG+TGG | 0.611836 | 6.4:-13552389 | MS.gene060268:CDS |
| ATTATAAGGAGGCTCTAGAA+GGG | 0.613050 | 6.4:-13553500 | MS.gene060268:CDS |
| GACACTGATAGTGATACAGA+TGG | 0.614810 | 6.4:-13555523 | MS.gene060268:CDS |
| GCTACTTTGAGTTACTTCCA+AGG | 0.617165 | 6.4:-13554767 | MS.gene060268:intron |
| GTTGATAAACAAGTTGCTAG+TGG | 0.617676 | 6.4:-13554941 | MS.gene060268:CDS |
| TGATAGTGATACAGATGGGG+TGG | 0.618742 | 6.4:-13555518 | MS.gene060268:CDS |
| CATGTCCATTTCCCTCATGA+CGG | 0.619225 | 6.4:+13553448 | None:intergenic |
| GATGATAGGGTAGTTGTCGG+AGG | 0.619255 | 6.4:+13552607 | None:intergenic |
| CATTGAACGAGATGAAGATG+AGG | 0.623154 | 6.4:-13553865 | MS.gene060268:CDS |
| ACATAGTGATACAGATGAGG+TGG | 0.623452 | 6.4:-13555569 | MS.gene060268:CDS |
| CCACTGATGGTGAATGTCAA+AGG | 0.624002 | 6.4:-13553363 | MS.gene060268:CDS |
| TATGGTTCCAACTTGCACAA+TGG | 0.627946 | 6.4:+13552707 | None:intergenic |
| TTTCACGGATCATCAGGCAA+GGG | 0.637022 | 6.4:-13554816 | MS.gene060268:CDS |
| CCTTTCTTACTTCAAACCCG+TGG | 0.639832 | 6.4:+13555227 | None:intergenic |
| CATTGCAAACACCATTACCA+TGG | 0.642035 | 6.4:+13555374 | None:intergenic |
| TATGGGGTGCCAAATAATGG+TGG | 0.646881 | 6.4:-13552649 | MS.gene060268:CDS |
| AATGGTGTTTGCAATGAGCA+AGG | 0.648235 | 6.4:-13555367 | MS.gene060268:CDS |
| GCTAGTGGTCTACATTCGCA+AGG | 0.649023 | 6.4:-13554926 | MS.gene060268:CDS |
| ATCAAATGGACAAAACGCAA+AGG | 0.651947 | 6.4:+13554989 | None:intergenic |
| AAAATGACCATGTTTCGTCG+AGG | 0.652304 | 6.4:-13553579 | MS.gene060268:CDS |
| ATGGTGTTTGCAATGAGCAA+GGG | 0.657603 | 6.4:-13555366 | MS.gene060268:CDS |
| TCTGTAGCAGTGTCAAATGG+TGG | 0.657609 | 6.4:-13553036 | MS.gene060268:CDS |
| TGATGGAGATGCAGACGGTG+TGG | 0.660310 | 6.4:-13555404 | MS.gene060268:CDS |
| ACACTGATAGTGATACAGAT+GGG | 0.663559 | 6.4:-13555522 | MS.gene060268:CDS |
| TGTCGTGTCTGAAGATCAAG+GGG | 0.668190 | 6.4:-13553238 | MS.gene060268:CDS |
| TGCCATGAAGTATGACAACA+TGG | 0.671427 | 6.4:-13553697 | MS.gene060268:CDS |
| TGAATGTCAAAGGTGCCCGT+AGG | 0.674674 | 6.4:-13553353 | MS.gene060268:CDS |
| CAATTAGTATGCAATAAGGA+GGG | 0.675920 | 6.4:-13555163 | MS.gene060268:CDS |
| TGTAGACGCTTTGAACGTAG+AGG | 0.677604 | 6.4:-13553744 | MS.gene060268:CDS |
| CAATGTTCCGAGTTATACAC+CGG | 0.682160 | 6.4:-13552533 | MS.gene060268:intron |
| CATTTGACACTGCTACAGAG+TGG | 0.682675 | 6.4:+13553040 | None:intergenic |
| GAGCGCAAGTGATTATAAGG+AGG | 0.683366 | 6.4:-13553511 | MS.gene060268:CDS |
| TGTTGCGAATGATCCACTGA+TGG | 0.687875 | 6.4:-13553376 | MS.gene060268:CDS |
| GACGGTGTGGAATTTAACCA+TGG | 0.688761 | 6.4:-13555391 | MS.gene060268:CDS |
| TGAGGGAAATGGACATGACG+AGG | 0.691164 | 6.4:-13553442 | MS.gene060268:CDS |
| CGTACTGATGGAGATGCAGA+CGG | 0.711480 | 6.4:-13555409 | MS.gene060268:CDS |
| ACATAGACTATTGAACGCAG+CGG | 0.718507 | 6.4:+13553548 | None:intergenic |
| CACTGATAGTGATACAGATG+GGG | 0.724418 | 6.4:-13555521 | MS.gene060268:CDS |
| TGTACATAGTGATACAGATG+AGG | 0.739686 | 6.4:-13555572 | MS.gene060268:CDS |
| AATTATGCAAGAAATCCACA+AGG | 0.743577 | 6.4:+13554069 | None:intergenic |
| GGATATGGAATTCAACACAG+AGG | 0.763384 | 6.4:-13555287 | MS.gene060268:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTTTAATATGCACTA+TGG | - | chr6.4:13555316-13555335 | MS.gene060268:CDS | 15.0% |
| !!! | ATTATTTTAATATGCACTAT+GGG | - | chr6.4:13555317-13555336 | MS.gene060268:CDS | 15.0% |
| !!! | TCATAAACTGTTTTAAATAT+AGG | + | chr6.4:13555545-13555564 | None:intergenic | 15.0% |
| !!! | TGAAATTGTATATGATATTT+TGG | - | chr6.4:13554872-13554891 | MS.gene060268:CDS | 15.0% |
| !! | AAAGGACTTATATAATTTCA+CGG | - | chr6.4:13553152-13553171 | MS.gene060268:intron | 20.0% |
| !! | AAAGTTTAAAGATGTCAAAA+AGG | - | chr6.4:13554067-13554086 | MS.gene060268:CDS | 20.0% |
| !!! | ATTTTCAAGGTTAATGTATT+TGG | - | chr6.4:13554155-13554174 | MS.gene060268:intron | 20.0% |
| !!! | TTATTTTAATATGCACTATG+GGG | - | chr6.4:13555318-13555337 | MS.gene060268:CDS | 20.0% |
| ! | AATTAAAGCACAAGCAAAAA+TGG | + | chr6.4:13553448-13553467 | None:intergenic | 25.0% |
| ! | ATATCCACTAAAAATGACAA+GGG | + | chr6.4:13553406-13553425 | None:intergenic | 25.0% |
| ! | CAGCAAATATACTATAACAA+AGG | + | chr6.4:13555142-13555161 | None:intergenic | 25.0% |
| ! | GATGGAAAAAATAAGAAGAA+TGG | - | chr6.4:13552850-13552869 | MS.gene060268:intron | 25.0% |
| ! | GGTGGGTAAAAAAAATTTAT+CGG | - | chr6.4:13553772-13553791 | MS.gene060268:CDS | 25.0% |
| ! | TAAACAATCAAAATACTCAC+CGG | + | chr6.4:13555472-13555491 | None:intergenic | 25.0% |
| ! | TATATCCACTAAAAATGACA+AGG | + | chr6.4:13553407-13553426 | None:intergenic | 25.0% |
| ! | TATCAACTTCACTCAATTTA+CGG | + | chr6.4:13553029-13553048 | None:intergenic | 25.0% |
| !! | CAAAAAAGATGTAGCTTTTT+CGG | - | chr6.4:13554178-13554197 | MS.gene060268:intron | 25.0% |
| !! | GACATCTTTAAACTTTTTAC+CGG | + | chr6.4:13554063-13554082 | None:intergenic | 25.0% |
| !! | TCAATGTTGATTGTGATATT+TGG | + | chr6.4:13555109-13555128 | None:intergenic | 25.0% |
| !! | TTTTTCATCATTACCTTCTT+GGG | + | chr6.4:13554387-13554406 | None:intergenic | 25.0% |
| !!! | GGTTCTAAATTTGTTTTCAA+AGG | - | chr6.4:13553497-13553516 | MS.gene060268:CDS | 25.0% |
| !!! | TTGTTTTGATTGTTGTAGAA+TGG | - | chr6.4:13555205-13555224 | MS.gene060268:CDS | 25.0% |
| !!! | TTTTTTCATCATTACCTTCT+TGG | + | chr6.4:13554388-13554407 | None:intergenic | 25.0% |
| AAAACTGATCCACCATTATT+TGG | + | chr6.4:13555346-13555365 | None:intergenic | 30.0% | |
| AAACAATAGAGACATACAAG+TGG | - | chr6.4:13553475-13553494 | MS.gene060268:CDS | 30.0% | |
| AACAAATACAAGCACTAGAA+AGG | - | chr6.4:13555066-13555085 | MS.gene060268:CDS | 30.0% | |
| AACAATAGAGACATACAAGT+GGG | - | chr6.4:13553476-13553495 | MS.gene060268:CDS | 30.0% | |
| AAGGGTTAAAATACAAGATG+GGG | - | chr6.4:13553185-13553204 | MS.gene060268:intron | 30.0% | |
| AATTATGCAAGAAATCCACA+AGG | + | chr6.4:13553917-13553936 | None:intergenic | 30.0% | |
| ACAAATACAAGCACTAGAAA+GGG | - | chr6.4:13555067-13555086 | MS.gene060268:CDS | 30.0% | |
| ACCTATAGAAAGAACAAGTA+TGG | - | chr6.4:13553375-13553394 | MS.gene060268:CDS | 30.0% | |
| AGATGATGATATAAGGGATA+TGG | - | chr6.4:13552681-13552700 | MS.gene060268:CDS | 30.0% | |
| AGTGTTAGAATGTGATGATA+GGG | + | chr6.4:13555392-13555411 | None:intergenic | 30.0% | |
| ATACTTGTTCTTTCTATAGG+TGG | + | chr6.4:13553376-13553395 | None:intergenic | 30.0% | |
| ATATAATTTCACGGATCATC+AGG | - | chr6.4:13553161-13553180 | MS.gene060268:intron | 30.0% | |
| ATCATTCGCAACAAATTTGT+TGG | + | chr6.4:13554600-13554619 | None:intergenic | 30.0% | |
| ATGTGACAGATGATGATATA+AGG | - | chr6.4:13552674-13552693 | MS.gene060268:CDS | 30.0% | |
| CAAGGGTTAAAATACAAGAT+GGG | - | chr6.4:13553184-13553203 | MS.gene060268:intron | 30.0% | |
| CAATTAGTATGCAATAAGGA+GGG | - | chr6.4:13552820-13552839 | MS.gene060268:intron | 30.0% | |
| GAGTTTACATTTACAGATGA+TGG | - | chr6.4:13553270-13553289 | MS.gene060268:CDS | 30.0% | |
| GATTCATTATCAGACTCAAT+AGG | + | chr6.4:13554782-13554801 | None:intergenic | 30.0% | |
| GTAAGAACATGTCATATCTT+GGG | - | chr6.4:13553081-13553100 | MS.gene060268:intron | 30.0% | |
| GTATCACTATGTACATCAAA+AGG | + | chr6.4:13552406-13552425 | None:intergenic | 30.0% | |
| GTATTGTTTGCAAAATACCA+CGG | - | chr6.4:13552739-13552758 | MS.gene060268:CDS | 30.0% | |
| GTTCTAATTGTAGAAATCCT+GGG | - | chr6.4:13554684-13554703 | MS.gene060268:intron | 30.0% | |
| TATCCACTAAAAATGACAAG+GGG | + | chr6.4:13553405-13553424 | None:intergenic | 30.0% | |
| TATTGTTTGCAAAATACCAC+GGG | - | chr6.4:13552740-13552759 | MS.gene060268:CDS | 30.0% | |
| TCAATTAGTATGCAATAAGG+AGG | - | chr6.4:13552819-13552838 | MS.gene060268:intron | 30.0% | |
| TCACTCAATTTACGGTAATT+AGG | + | chr6.4:13553021-13553040 | None:intergenic | 30.0% | |
| TCCATACTTGTTCTTTCTAT+AGG | + | chr6.4:13553379-13553398 | None:intergenic | 30.0% | |
| TGTAAGAACATGTCATATCT+TGG | - | chr6.4:13553080-13553099 | MS.gene060268:intron | 30.0% | |
| TGTGACAGATGATGATATAA+GGG | - | chr6.4:13552675-13552694 | MS.gene060268:CDS | 30.0% | |
| TGTTCTAATTGTAGAAATCC+TGG | - | chr6.4:13554683-13554702 | MS.gene060268:intron | 30.0% | |
| TTCTAACACCACACAAAAAA+TGG | + | chr6.4:13553833-13553852 | None:intergenic | 30.0% | |
| ! | ATTTTTCATGTCCAAAGTCA+CGG | + | chr6.4:13555237-13555256 | None:intergenic | 30.0% |
| ! | TTTTGGATGTTTGTCATACA+TGG | + | chr6.4:13553523-13553542 | None:intergenic | 30.0% |
| !! | ATTTTGACCTATCAAACAAC+AGG | - | chr6.4:13553751-13553770 | MS.gene060268:CDS | 30.0% |
| !! | TAAATTTGTTGCGAGTGATA+AGG | - | chr6.4:13554574-13554593 | MS.gene060268:intron | 30.0% |
| !!! | ACGCCTAGAAAACATTTTTT+GGG | - | chr6.4:13553293-13553312 | MS.gene060268:CDS | 30.0% |
| !!! | CATATCTTGGGTTTTTTGAT+GGG | - | chr6.4:13553093-13553112 | MS.gene060268:intron | 30.0% |
| !!! | TCATATCTTGGGTTTTTTGA+TGG | - | chr6.4:13553092-13553111 | MS.gene060268:intron | 30.0% |
| !!! | TGGAAACATTGTCATTTTCA+AGG | - | chr6.4:13554142-13554161 | MS.gene060268:intron | 30.0% |
| AAGATAAATAGCCGTCATGA+GGG | - | chr6.4:13554524-13554543 | MS.gene060268:intron | 35.0% | |
| ACTTCATGGCACAAATAATG+TGG | + | chr6.4:13554277-13554296 | None:intergenic | 35.0% | |
| AGGACTTGGGTTTATCAAAA+AGG | - | chr6.4:13553134-13553153 | MS.gene060268:intron | 35.0% | |
| ATCAAATGGACAAAACGCAA+AGG | + | chr6.4:13552997-13553016 | None:intergenic | 35.0% | |
| ATCACTCGCAACAAATTTAC+TGG | + | chr6.4:13554573-13554592 | None:intergenic | 35.0% | |
| ATCCATGTTGTCATACTTCA+TGG | + | chr6.4:13554291-13554310 | None:intergenic | 35.0% | |
| ATGTGAAGCGTGATTCTAAT+GGG | - | chr6.4:13552782-13552801 | MS.gene060268:intron | 35.0% | |
| ATTTAGTCTGCAACTTGTCA+AGG | + | chr6.4:13554208-13554227 | None:intergenic | 35.0% | |
| CAGTGTTAGAATGTGATGAT+AGG | + | chr6.4:13555393-13555412 | None:intergenic | 35.0% | |
| CTGAAAAGTTTGAATCTGAG+TGG | - | chr6.4:13553712-13553731 | MS.gene060268:CDS | 35.0% | |
| CTTCATGGCACAAATAATGT+GGG | + | chr6.4:13554276-13554295 | None:intergenic | 35.0% | |
| GAAGCTTCAAAGATATTCAC+CGG | - | chr6.4:13554041-13554060 | MS.gene060268:CDS | 35.0% | |
| GAGTTGTGTTTCCAAATACA+AGG | - | chr6.4:13553586-13553605 | MS.gene060268:CDS | 35.0% | |
| GCAAGGGTTAAAATACAAGA+TGG | - | chr6.4:13553183-13553202 | MS.gene060268:intron | 35.0% | |
| GCGTCAATTAGTATGCAATA+AGG | - | chr6.4:13552816-13552835 | MS.gene060268:intron | 35.0% | |
| GTATGACAAACATCCAAAAG+CGG | - | chr6.4:13553524-13553543 | MS.gene060268:CDS | 35.0% | |
| GTGGAATTTAACCATGGTAA+TGG | - | chr6.4:13552598-13552617 | MS.gene060268:CDS | 35.0% | |
| TAACACCATACCCAACATTA+TGG | + | chr6.4:13555297-13555316 | None:intergenic | 35.0% | |
| TAAGATAAATAGCCGTCATG+AGG | - | chr6.4:13554523-13554542 | MS.gene060268:intron | 35.0% | |
| TACGGTAATTAGGCATCAAA+TGG | + | chr6.4:13553011-13553030 | None:intergenic | 35.0% | |
| TATCATTACTCATAGACAGC+TGG | + | chr6.4:13554910-13554929 | None:intergenic | 35.0% | |
| TGTACATAGTGATACAGATG+AGG | - | chr6.4:13552411-13552430 | MS.gene060268:CDS | 35.0% | |
| TTAGAACAACATCTTGTCCT+TGG | + | chr6.4:13554671-13554690 | None:intergenic | 35.0% | |
| ! | AAAGTCTGATTTGCAAGAGA+TGG | - | chr6.4:13554321-13554340 | MS.gene060268:intron | 35.0% |
| ! | ACACTGATAGTGATACAGAT+GGG | - | chr6.4:13552461-13552480 | MS.gene060268:intron | 35.0% |
| ! | AGGTTTGACTATGAGTGTTT+TGG | - | chr6.4:13553330-13553349 | MS.gene060268:CDS | 35.0% |
| ! | CAAGTTGGAACCATAATGTT+GGG | - | chr6.4:13555284-13555303 | MS.gene060268:CDS | 35.0% |
| ! | CACTCAGATTCAAACTTTTC+AGG | + | chr6.4:13553714-13553733 | None:intergenic | 35.0% |
| ! | CTGCCCAAAAAATGTTTTCT+AGG | + | chr6.4:13553299-13553318 | None:intergenic | 35.0% |
| ! | GTTGATAAACAAGTTGCTAG+TGG | - | chr6.4:13553042-13553061 | MS.gene060268:CDS | 35.0% |
| ! | TAAGAGCGCAAGTGATTATA+AGG | - | chr6.4:13554469-13554488 | MS.gene060268:intron | 35.0% |
| ! | TTATCGGTTGAAGAGAATGT+GGG | - | chr6.4:13553788-13553807 | MS.gene060268:CDS | 35.0% |
| ! | TTTAGTGGATATAACCACCA+TGG | - | chr6.4:13553414-13553433 | MS.gene060268:CDS | 35.0% |
| ! | TTTATCGGTTGAAGAGAATG+TGG | - | chr6.4:13553787-13553806 | MS.gene060268:CDS | 35.0% |
| ! | TTTGAGTTACTTCCAAGGTA+AGG | - | chr6.4:13553221-13553240 | MS.gene060268:CDS | 35.0% |
| ! | TTTTTCATGTCCAAAGTCAC+GGG | + | chr6.4:13555236-13555255 | None:intergenic | 35.0% |
| !! | AATAAGGAGGGTGTTAATGA+TGG | - | chr6.4:13552832-13552851 | MS.gene060268:intron | 35.0% |
| !! | ATTATAAGGAGGCTCTAGAA+GGG | - | chr6.4:13554483-13554502 | MS.gene060268:intron | 35.0% |
| !! | CAAAAATGGTTGTTTCTCCA+TGG | + | chr6.4:13553434-13553453 | None:intergenic | 35.0% |
| !! | TGCTGAAAATTGTGTTGCTT+TGG | - | chr6.4:13555157-13555176 | MS.gene060268:CDS | 35.0% |
| !!! | AAACCCCTTGTCATTTTTAG+TGG | - | chr6.4:13553399-13553418 | MS.gene060268:CDS | 35.0% |
| !!! | GACGCCTAGAAAACATTTTT+TGG | - | chr6.4:13553292-13553311 | MS.gene060268:CDS | 35.0% |
| !!! | GGTTTTTTGATGGGTCAAAA+GGG | - | chr6.4:13553102-13553121 | MS.gene060268:intron | 35.0% |
| !!! | GTGTTGACTTTTTACTCCTA+CGG | + | chr6.4:13554649-13554668 | None:intergenic | 35.0% |
| !!! | TCAAACTTTTCAGGTGTACA+AGG | + | chr6.4:13553705-13553724 | None:intergenic | 35.0% |
| !!! | TGTTGACTTTTTACTCCTAC+GGG | + | chr6.4:13554648-13554667 | None:intergenic | 35.0% |
| AAAAGCGGTGATTACTGATG+GGG | - | chr6.4:13553539-13553558 | MS.gene060268:CDS | 40.0% | |
| AAAATGACCATGTTTCGTCG+AGG | - | chr6.4:13554404-13554423 | MS.gene060268:intron | 40.0% | |
| AAACATCGCAGTGACTATTG+TGG | - | chr6.4:13555594-13555613 | MS.gene060268:CDS | 40.0% | |
| AAATGACCATGTTTCGTCGA+GGG | - | chr6.4:13554405-13554424 | MS.gene060268:intron | 40.0% | |
| AAATGGACATGACGAGGATA+AGG | - | chr6.4:13554547-13554566 | MS.gene060268:intron | 40.0% | |
| AACAACGATGTTCGTACTGA+TGG | - | chr6.4:13552562-13552581 | MS.gene060268:CDS | 40.0% | |
| AACGCAAAGGAGCTAATTCA+TGG | + | chr6.4:13552984-13553003 | None:intergenic | 40.0% | |
| AATGGTGTTTGCAATGAGCA+AGG | - | chr6.4:13552616-13552635 | MS.gene060268:CDS | 40.0% | |
| ACATAGACTATTGAACGCAG+CGG | + | chr6.4:13554438-13554457 | None:intergenic | 40.0% | |
| ACATAGTGATACAGATGAGG+TGG | - | chr6.4:13552414-13552433 | MS.gene060268:CDS | 40.0% | |
| ACGACTTTGTTCGTACGATT+TGG | - | chr6.4:13552929-13552948 | MS.gene060268:CDS | 40.0% | |
| AGAACGACATCAATCTGTGA+AGG | - | chr6.4:13553849-13553868 | MS.gene060268:CDS | 40.0% | |
| AGATGTCAAAAAGGCGATAG+AGG | - | chr6.4:13554076-13554095 | MS.gene060268:CDS | 40.0% | |
| AGCTAATTCATGGTTGTGAG+AGG | + | chr6.4:13552974-13552993 | None:intergenic | 40.0% | |
| AGTTTGAATCTGAGTGGAAG+AGG | - | chr6.4:13553718-13553737 | MS.gene060268:CDS | 40.0% | |
| ATACTCACCGGTGTATAACT+CGG | + | chr6.4:13555460-13555479 | None:intergenic | 40.0% | |
| ATGGTGTTTGCAATGAGCAA+GGG | - | chr6.4:13552617-13552636 | MS.gene060268:CDS | 40.0% | |
| CAAAAGCGGTGATTACTGAT+GGG | - | chr6.4:13553538-13553557 | MS.gene060268:CDS | 40.0% | |
| CAAGGGAAAGAGAACTTTGA+TGG | - | chr6.4:13552634-13552653 | MS.gene060268:CDS | 40.0% | |
| CAATGTTCCGAGTTATACAC+CGG | - | chr6.4:13555450-13555469 | MS.gene060268:CDS | 40.0% | |
| CACTGGTATTACACGTAAGA+GGG | - | chr6.4:13554988-13555007 | MS.gene060268:CDS | 40.0% | |
| CATTGAACGAGATGAAGATG+AGG | - | chr6.4:13554118-13554137 | MS.gene060268:intron | 40.0% | |
| CATTGCAAACACCATTACCA+TGG | + | chr6.4:13552612-13552631 | None:intergenic | 40.0% | |
| CGCAGAACAATTAGTTCGAA+TGG | + | chr6.4:13552893-13552912 | None:intergenic | 40.0% | |
| CTCTTGCAAATCAGACTTTC+AGG | + | chr6.4:13554320-13554339 | None:intergenic | 40.0% | |
| GATGTGAAGCGTGATTCTAA+TGG | - | chr6.4:13552781-13552800 | MS.gene060268:intron | 40.0% | |
| GCACAAATAATGTGGGAACA+TGG | + | chr6.4:13554269-13554288 | None:intergenic | 40.0% | |
| GCTAATTCATGGTTGTGAGA+GGG | + | chr6.4:13552973-13552992 | None:intergenic | 40.0% | |
| GGAGTAAAAAGTCAACACCA+AGG | - | chr6.4:13554651-13554670 | MS.gene060268:intron | 40.0% | |
| GGATATGGAATTCAACACAG+AGG | - | chr6.4:13552696-13552715 | MS.gene060268:CDS | 40.0% | |
| GTTTGAATCTGAGTGGAAGA+GGG | - | chr6.4:13553719-13553738 | MS.gene060268:CDS | 40.0% | |
| TATCAGTATCAGCCTTACCT+TGG | + | chr6.4:13553236-13553255 | None:intergenic | 40.0% | |
| TATGAGTGCGTTGAAGAATG+TGG | - | chr6.4:13555560-13555579 | MS.gene060268:CDS | 40.0% | |
| TATGGTTCCAACTTGCACAA+TGG | + | chr6.4:13555279-13555298 | None:intergenic | 40.0% | |
| TGACCTATCAAACAACAGGT+GGG | - | chr6.4:13553755-13553774 | MS.gene060268:CDS | 40.0% | |
| TGATAAACCCAAGTCCTTCA+TGG | + | chr6.4:13553131-13553150 | None:intergenic | 40.0% | |
| TGCCATGAAGTATGACAACA+TGG | - | chr6.4:13554286-13554305 | MS.gene060268:intron | 40.0% | |
| TGGAACCATAATGTTGGGTA+TGG | - | chr6.4:13555289-13555308 | MS.gene060268:CDS | 40.0% | |
| TGTGATGATAGGGTAGTTGT+CGG | + | chr6.4:13555382-13555401 | None:intergenic | 40.0% | |
| TTCATCATTACCTTCTTGGG+AGG | + | chr6.4:13554384-13554403 | None:intergenic | 40.0% | |
| TTCGAATGGTTAGCGTAGAT+CGG | + | chr6.4:13552879-13552898 | None:intergenic | 40.0% | |
| TTGACCTATCAAACAACAGG+TGG | - | chr6.4:13553754-13553773 | MS.gene060268:CDS | 40.0% | |
| TTTGGGCAGATTCTACTAGT+AGG | - | chr6.4:13553310-13553329 | MS.gene060268:CDS | 40.0% | |
| ! | CACTGATAGTGATACAGATG+GGG | - | chr6.4:13552462-13552481 | MS.gene060268:intron | 40.0% |
| ! | GACACTGATAGTGATACAGA+TGG | - | chr6.4:13552460-13552479 | MS.gene060268:intron | 40.0% |
| ! | GCAAGTTGGAACCATAATGT+TGG | - | chr6.4:13555283-13555302 | MS.gene060268:CDS | 40.0% |
| ! | GCTACTTTGAGTTACTTCCA+AGG | - | chr6.4:13553216-13553235 | MS.gene060268:CDS | 40.0% |
| ! | TTACCCACCTGTTGTTTGAT+AGG | + | chr6.4:13553761-13553780 | None:intergenic | 40.0% |
| !! | AAATGGTTGTTTCTCCATGG+TGG | + | chr6.4:13553431-13553450 | None:intergenic | 40.0% |
| !! | GATTATAAGGAGGCTCTAGA+AGG | - | chr6.4:13554482-13554501 | MS.gene060268:intron | 40.0% |
| !! | TTTTTGATGGGTCAAAAGGG+TGG | - | chr6.4:13553105-13553124 | MS.gene060268:intron | 40.0% |
| !!! | ATGCGAGACCATTTTTTGTG+TGG | - | chr6.4:13553822-13553841 | MS.gene060268:CDS | 40.0% |
| !!! | GGGTTTTTTGATGGGTCAAA+AGG | - | chr6.4:13553101-13553120 | MS.gene060268:intron | 40.0% |
| AAGACAGCCATTGTGCAAGT+TGG | - | chr6.4:13555269-13555288 | MS.gene060268:CDS | 45.0% | |
| AATAGCCGTCATGAGGGAAA+TGG | - | chr6.4:13554530-13554549 | MS.gene060268:intron | 45.0% | |
| AATGACCATGTTTCGTCGAG+GGG | - | chr6.4:13554406-13554425 | MS.gene060268:intron | 45.0% | |
| ACACCAATTCCAGCAAGTTC+TGG | + | chr6.4:13554728-13554747 | None:intergenic | 45.0% | |
| ACTGGAACACACAATGTTCC+TGG | - | chr6.4:13555421-13555440 | MS.gene060268:CDS | 45.0% | |
| AGCATTTCGATGCAAATGCC+AGG | + | chr6.4:13553625-13553644 | None:intergenic | 45.0% | |
| ATGATAGGGTAGTTGTCGGA+GGG | + | chr6.4:13555378-13555397 | None:intergenic | 45.0% | |
| ATTTCACGGATCATCAGGCA+AGG | - | chr6.4:13553166-13553185 | MS.gene060268:intron | 45.0% | |
| CAAAGGCGATGCCTTGTATT+TGG | + | chr6.4:13553600-13553619 | None:intergenic | 45.0% | |
| CACTCTGTAGCAGTGTCAAA+TGG | - | chr6.4:13554944-13554963 | MS.gene060268:CDS | 45.0% | |
| CATGTCCATTTCCCTCATGA+CGG | + | chr6.4:13554538-13554557 | None:intergenic | 45.0% | |
| CATTTGACACTGCTACAGAG+TGG | + | chr6.4:13554946-13554965 | None:intergenic | 45.0% | |
| CCAAAAGCGGTGATTACTGA+TGG | - | chr6.4:13553537-13553556 | MS.gene060268:CDS | 45.0% | |
| CCTTTCTTACTTCAAACCCG+TGG | + | chr6.4:13552759-13552778 | None:intergenic | 45.0% | |
| CCTTTGACATTCACCATCAG+TGG | + | chr6.4:13554623-13554642 | None:intergenic | 45.0% | |
| GAAATCCTGGGCACACAATA+CGG | - | chr6.4:13554696-13554715 | MS.gene060268:intron | 45.0% | |
| GAACGAGATGAAGATGAGGA+TGG | - | chr6.4:13554122-13554141 | MS.gene060268:intron | 45.0% | |
| GACGGTGTGGAATTTAACCA+TGG | - | chr6.4:13552592-13552611 | MS.gene060268:CDS | 45.0% | |
| GAGCGCAAGTGATTATAAGG+AGG | - | chr6.4:13554472-13554491 | MS.gene060268:intron | 45.0% | |
| GTCAATGCAGTTGTCAGCAT+AGG | + | chr6.4:13554008-13554027 | None:intergenic | 45.0% | |
| GTGTCGTGTCTGAAGATCAA+GGG | - | chr6.4:13554744-13554763 | MS.gene060268:intron | 45.0% | |
| TCTAACACTGCTCTGCATAC+TGG | - | chr6.4:13555403-13555422 | MS.gene060268:CDS | 45.0% | |
| TCTGTAGCAGTGTCAAATGG+TGG | - | chr6.4:13554947-13554966 | MS.gene060268:CDS | 45.0% | |
| TGTCGTGTCTGAAGATCAAG+GGG | - | chr6.4:13554745-13554764 | MS.gene060268:intron | 45.0% | |
| TGTTGCGAATGATCCACTGA+TGG | - | chr6.4:13554607-13554626 | MS.gene060268:intron | 45.0% | |
| TTTCACGGATCATCAGGCAA+GGG | - | chr6.4:13553167-13553186 | MS.gene060268:intron | 45.0% | |
| ! | CACTATGGGGTGCCAAATAA+TGG | - | chr6.4:13555331-13555350 | MS.gene060268:CDS | 45.0% |
| ! | CCACGGGTTTGAAGTAAGAA+AGG | - | chr6.4:13552756-13552775 | MS.gene060268:CDS | 45.0% |
| ! | CCACTGATGGTGAATGTCAA+AGG | - | chr6.4:13554620-13554639 | MS.gene060268:intron | 45.0% |
| ! | CCATCAGTAATCACCGCTTT+TGG | + | chr6.4:13553540-13553559 | None:intergenic | 45.0% |
| ! | CGAGATGTTGAGAAAAGCAC+TGG | - | chr6.4:13554971-13554990 | MS.gene060268:CDS | 45.0% |
| ! | GCACTGGTATTACACGTAAG+AGG | - | chr6.4:13554987-13555006 | MS.gene060268:CDS | 45.0% |
| ! | TATGGGGTGCCAAATAATGG+TGG | - | chr6.4:13555334-13555353 | MS.gene060268:CDS | 45.0% |
| ! | TGATAGTGATACAGATGGGG+TGG | - | chr6.4:13552465-13552484 | MS.gene060268:intron | 45.0% |
| ! | TGTAGACGCTTTGAACGTAG+AGG | - | chr6.4:13554239-13554258 | MS.gene060268:intron | 45.0% |
| !! | TGTCCAGAACTTGCTGGAAT+TGG | - | chr6.4:13554722-13554741 | MS.gene060268:intron | 45.0% |
| !!! | CCACAAGGCTGTTTTTGTGT+CGG | + | chr6.4:13553902-13553921 | None:intergenic | 45.0% |
| AATGGTGTGACCCGTGACTT+TGG | - | chr6.4:13555223-13555242 | MS.gene060268:CDS | 50.0% | |
| CCGACACAAAAACAGCCTTG+TGG | - | chr6.4:13553899-13553918 | MS.gene060268:CDS | 50.0% | |
| CTCGGAACATTGTGTGTTCC+AGG | + | chr6.4:13555442-13555461 | None:intergenic | 50.0% | |
| GATGATAGGGTAGTTGTCGG+AGG | + | chr6.4:13555379-13555398 | None:intergenic | 50.0% | |
| GCTAGTGGTCTACATTCGCA+AGG | - | chr6.4:13553057-13553076 | MS.gene060268:CDS | 50.0% | |
| GTAGTTGTCGGAGGGAATTG+TGG | + | chr6.4:13555370-13555389 | None:intergenic | 50.0% | |
| GTCTGAAGATCAAGGGGAGA+AGG | - | chr6.4:13554751-13554770 | MS.gene060268:intron | 50.0% | |
| TCGTCATTTGCCTCCCAAGA+AGG | - | chr6.4:13554371-13554390 | MS.gene060268:intron | 50.0% | |
| TGAGGGAAATGGACATGACG+AGG | - | chr6.4:13554541-13554560 | MS.gene060268:intron | 50.0% | |
| ! | CGTACTGATGGAGATGCAGA+CGG | - | chr6.4:13552574-13552593 | MS.gene060268:CDS | 50.0% |
| ! | GGTGTCGTGTCTGAAGATCA+AGG | - | chr6.4:13554743-13554762 | MS.gene060268:intron | 50.0% |
| !! | TGAATGTCAAAGGTGCCCGT+AGG | - | chr6.4:13554630-13554649 | MS.gene060268:intron | 50.0% |
| AAGGGTGGCCATGAAGGACT+TGG | - | chr6.4:13553120-13553139 | MS.gene060268:intron | 55.0% | |
| AAGTGCCCCTCGACGAAACA+TGG | + | chr6.4:13554414-13554433 | None:intergenic | 55.0% | |
| AGGGTGGCCATGAAGGACTT+GGG | - | chr6.4:13553121-13553140 | MS.gene060268:intron | 55.0% | |
| GATGCAAATGCCAGGCGCAA+AGG | + | chr6.4:13553617-13553636 | None:intergenic | 55.0% | |
| GGTCAAAAGGGTGGCCATGA+AGG | - | chr6.4:13553114-13553133 | MS.gene060268:intron | 55.0% | |
| TGATGGAGATGCAGACGGTG+TGG | - | chr6.4:13552579-13552598 | MS.gene060268:CDS | 55.0% | |
| CACGTCCGTATTGTGTGCCC+AGG | + | chr6.4:13554704-13554723 | None:intergenic | 60.0% | |
| CGGACGTGTCCAGAACTTGC+TGG | - | chr6.4:13554716-13554735 | MS.gene060268:intron | 60.0% | |
| !! | CAAGGCATCGCCTTTGCGCC+TGG | - | chr6.4:13553604-13553623 | MS.gene060268:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 13552376 | 13555629 | 13552376 | ID=MS.gene060268 |
| chr6.4 | mRNA | 13552376 | 13555629 | 13552376 | ID=MS.gene060268.t1;Parent=MS.gene060268 |
| chr6.4 | exon | 13554768 | 13555629 | 13554768 | ID=MS.gene060268.t1.exon1;Parent=MS.gene060268.t1 |
| chr6.4 | CDS | 13554768 | 13555629 | 13554768 | ID=cds.MS.gene060268.t1;Parent=MS.gene060268.t1 |
| chr6.4 | exon | 13553191 | 13554131 | 13553191 | ID=MS.gene060268.t1.exon2;Parent=MS.gene060268.t1 |
| chr6.4 | CDS | 13553191 | 13554131 | 13553191 | ID=cds.MS.gene060268.t1;Parent=MS.gene060268.t1 |
| chr6.4 | exon | 13552873 | 13553094 | 13552873 | ID=MS.gene060268.t1.exon3;Parent=MS.gene060268.t1 |
| chr6.4 | CDS | 13552873 | 13553094 | 13552873 | ID=cds.MS.gene060268.t1;Parent=MS.gene060268.t1 |
| chr6.4 | exon | 13552534 | 13552782 | 13552534 | ID=MS.gene060268.t1.exon4;Parent=MS.gene060268.t1 |
| chr6.4 | CDS | 13552534 | 13552782 | 13552534 | ID=cds.MS.gene060268.t1;Parent=MS.gene060268.t1 |
| chr6.4 | exon | 13552376 | 13552447 | 13552376 | ID=MS.gene060268.t1.exon5;Parent=MS.gene060268.t1 |
| chr6.4 | CDS | 13552376 | 13552447 | 13552376 | ID=cds.MS.gene060268.t1;Parent=MS.gene060268.t1 |
| Gene Sequence |
| Protein sequence |
