Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85798.t1 | AES75245.1 | 88.7 | 710 | 33 | 2 | 1 | 663 | 1 | 710 | 0.00E+00 | 1076.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85798.t1 | O80548 | 57.6 | 632 | 198 | 6 | 85 | 657 | 60 | 680 | 1.4e-191 | 671.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85798.t1 | G7KQ72 | 88.7 | 710 | 33 | 2 | 1 | 663 | 1 | 710 | 0.0e+00 | 1076.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene48290 | MS.gene85798 | PPI |
| MS.gene033329 | MS.gene85798 | PPI |
| MS.gene059971 | MS.gene85798 | PPI |
| MS.gene011370 | MS.gene85798 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85798.t1 | MTR_6g034560 | 91.127 | 710 | 16 | 2 | 1 | 663 | 1 | 710 | 0.0 | 1310 |
| MS.gene85798.t1 | MTR_4g104360 | 50.636 | 707 | 283 | 8 | 1 | 652 | 1 | 696 | 0.0 | 635 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85798.t1 | AT1G22730 | 56.516 | 706 | 234 | 11 | 11 | 662 | 2 | 688 | 0.0 | 745 |
| MS.gene85798.t1 | AT5G63190 | 48.958 | 672 | 279 | 9 | 31 | 652 | 39 | 696 | 0.0 | 616 |
| MS.gene85798.t1 | AT5G63190 | 48.958 | 672 | 279 | 9 | 31 | 652 | 39 | 696 | 0.0 | 616 |
| MS.gene85798.t1 | AT4G24800 | 48.429 | 700 | 299 | 9 | 5 | 652 | 2 | 691 | 0.0 | 593 |
| MS.gene85798.t1 | AT4G24800 | 42.160 | 287 | 164 | 2 | 115 | 401 | 412 | 696 | 1.39e-67 | 234 |
| MS.gene85798.t1 | AT4G24800 | 48.429 | 700 | 299 | 9 | 5 | 652 | 2 | 691 | 0.0 | 593 |
| MS.gene85798.t1 | AT4G24800 | 42.160 | 287 | 164 | 2 | 115 | 401 | 412 | 696 | 1.39e-67 | 234 |
| MS.gene85798.t1 | AT4G24800 | 48.429 | 700 | 299 | 9 | 5 | 652 | 2 | 691 | 0.0 | 593 |
| MS.gene85798.t1 | AT4G24800 | 42.160 | 287 | 164 | 2 | 115 | 401 | 412 | 696 | 1.39e-67 | 234 |
| MS.gene85798.t1 | AT4G24800 | 48.429 | 700 | 299 | 9 | 5 | 652 | 2 | 691 | 0.0 | 593 |
| MS.gene85798.t1 | AT4G24800 | 42.160 | 287 | 164 | 2 | 115 | 401 | 412 | 696 | 1.39e-67 | 234 |
| MS.gene85798.t1 | AT3G48390 | 48.805 | 586 | 240 | 7 | 115 | 652 | 54 | 627 | 0.0 | 543 |
| MS.gene85798.t1 | AT3G48390 | 43.729 | 295 | 161 | 3 | 98 | 392 | 334 | 623 | 3.06e-71 | 243 |
| MS.gene85798.t1 | AT3G48390 | 34.884 | 301 | 137 | 6 | 412 | 661 | 52 | 344 | 8.70e-37 | 146 |
| MS.gene85798.t1 | AT3G48390 | 22.955 | 440 | 274 | 8 | 111 | 521 | 214 | 617 | 2.09e-21 | 99.4 |
Find 110 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCCGTTCACTTGCGCCTT+TGG | 0.173072 | 6.4:-13786226 | None:intergenic |
| CTGAGTGAAGTTAGAGAAAT+TGG | 0.216068 | 6.4:+13787471 | MS.gene85798:CDS |
| TGCCGTTCACTTGCGCCTTT+GGG | 0.226688 | 6.4:-13786225 | None:intergenic |
| ACAAAATAGTAGCTGTATTC+TGG | 0.235608 | 6.4:-13787498 | None:intergenic |
| TGAAGAAGCTCTTGATGATT+TGG | 0.280860 | 6.4:+13789042 | MS.gene85798:CDS |
| CTGTCATAGTTTGGATCATT+GGG | 0.306818 | 6.4:-13787151 | None:intergenic |
| CCGAAACAGCTTGAAGATAT+TGG | 0.317505 | 6.4:+13788641 | MS.gene85798:CDS |
| ATTCAAGAGTACTTTCTATC+AGG | 0.334373 | 6.4:+13788329 | MS.gene85798:CDS |
| CCAATATCTTCAAGCTGTTT+CGG | 0.335857 | 6.4:-13788641 | None:intergenic |
| AGCTCTTGATGATTTGGCTT+TGG | 0.347710 | 6.4:+13789048 | MS.gene85798:CDS |
| ATCTTGAGATGTTGGGGTGG+GGG | 0.350219 | 6.4:+13788752 | MS.gene85798:CDS |
| ACCTCAGTGCTGTCATAGTT+TGG | 0.351430 | 6.4:-13787160 | None:intergenic |
| TTCTTTCAATAGTTCTAGTA+AGG | 0.359465 | 6.4:-13788060 | None:intergenic |
| GAAGATGTGAAAGATATGAT+AGG | 0.364316 | 6.4:+13788803 | MS.gene85798:CDS |
| TGAAATCATCGAGCGGCGTT+GGG | 0.366401 | 6.4:+13787848 | MS.gene85798:CDS |
| TTGCTAAAAGCAAGACTTGC+TGG | 0.369049 | 6.4:+13788722 | MS.gene85798:CDS |
| TCGGCTCCTTTAGAATCATT+TGG | 0.383573 | 6.4:-13787777 | None:intergenic |
| TCTCATTGTACAGGTGGTTC+TGG | 0.383793 | 6.4:+13787073 | MS.gene85798:intron |
| ATCAGCCGATTCGACTAGTT+TGG | 0.385780 | 6.4:-13787640 | None:intergenic |
| GTTCTGGTGGTAAAGGCACC+TGG | 0.387168 | 6.4:+13787089 | MS.gene85798:CDS |
| TGCAAAGGAGAAACAGTTAC+TGG | 0.401474 | 6.4:-13786175 | None:intergenic |
| TGGAATACTTCAACAACTAA+TGG | 0.403546 | 6.4:+13788184 | MS.gene85798:CDS |
| TGAAGTATTCCACGCGCGTT+TGG | 0.405900 | 6.4:-13788173 | None:intergenic |
| CGCTATGTTTCTTGCAAGAT+CGG | 0.413923 | 6.4:+13788598 | MS.gene85798:CDS |
| GCTGTCATAGTTTGGATCAT+TGG | 0.415985 | 6.4:-13787152 | None:intergenic |
| CTGAAATCATCGAGCGGCGT+TGG | 0.421883 | 6.4:+13787847 | MS.gene85798:CDS |
| ACTATTTCATGATGAAAGAA+AGG | 0.422014 | 6.4:-13787990 | None:intergenic |
| CTCAGCTTTCTTTAAAACCT+CGG | 0.424117 | 6.4:-13787796 | None:intergenic |
| TTCAAGAATGCAACAGAGAA+TGG | 0.426913 | 6.4:+13789151 | MS.gene85798:CDS |
| TGTAGATGCATGAAAGAGTT+AGG | 0.427178 | 6.4:+13788872 | MS.gene85798:CDS |
| TTCTGGTGGTAAAGGCACCT+GGG | 0.432855 | 6.4:+13787090 | MS.gene85798:CDS |
| ACATCTTCAATTTCCCATCC+TGG | 0.435001 | 6.4:-13788788 | None:intergenic |
| AACACAAGCCAAATGTCAAA+AGG | 0.438065 | 6.4:+13788104 | MS.gene85798:CDS |
| AAAGAATAGAGAGAAAGAAA+TGG | 0.442612 | 6.4:+13788457 | MS.gene85798:CDS |
| TGAGAGAATCTTGAGATGTT+GGG | 0.443902 | 6.4:+13788745 | MS.gene85798:CDS |
| TTGAAGCACTTTGCTTCCAA+TGG | 0.444863 | 6.4:-13788687 | None:intergenic |
| TTTGGGGACCTTGGTGACTT+AGG | 0.446880 | 6.4:-13786208 | None:intergenic |
| CCACCTGACGATGTTGTCAA+TGG | 0.446888 | 6.4:+13788509 | MS.gene85798:CDS |
| ATCACAATGGATTTCAATGA+TGG | 0.453089 | 6.4:+13786097 | None:intergenic |
| TTGAAAGAATATGTAGTAAG+TGG | 0.457360 | 6.4:+13787924 | MS.gene85798:CDS |
| GGTGGTAAAGGCACCTGGGG+TGG | 0.457361 | 6.4:+13787094 | MS.gene85798:CDS |
| ACTTGCGCCTTTGGGGACCT+TGG | 0.467080 | 6.4:-13786217 | None:intergenic |
| AATCTTGAGATGTTGGGGTG+GGG | 0.469675 | 6.4:+13788751 | MS.gene85798:CDS |
| GCAAACTGATTCTTAGCATC+AGG | 0.470425 | 6.4:-13789076 | None:intergenic |
| TTGAAAGAAGCTGCTGAAGA+AGG | 0.482697 | 6.4:+13788074 | MS.gene85798:CDS |
| AATTTACCAAATGATTCTAA+AGG | 0.487787 | 6.4:+13787771 | MS.gene85798:CDS |
| ACAGGTGGTTCTGGTGGTAA+AGG | 0.492160 | 6.4:+13787082 | MS.gene85798:intron |
| GTGAGAGAATCTTGAGATGT+TGG | 0.499361 | 6.4:+13788744 | MS.gene85798:CDS |
| TCCCCAAAGGCGCAAGTGAA+CGG | 0.499600 | 6.4:+13786223 | MS.gene85798:CDS |
| AGATATGATAGGGAAATTGT+TGG | 0.506777 | 6.4:+13788814 | MS.gene85798:CDS |
| AAAGCTTGTCTCGATGTCAA+TGG | 0.514528 | 6.4:+13787524 | MS.gene85798:CDS |
| TGATTTGATCGTGGATATAC+CGG | 0.515286 | 6.4:+13787662 | MS.gene85798:CDS |
| GCTAGGATATCAACCGTGTC+CGG | 0.516940 | 6.4:-13787681 | None:intergenic |
| GAATCTTGAGATGTTGGGGT+GGG | 0.520362 | 6.4:+13788750 | MS.gene85798:CDS |
| AAACCATTGACAACATCGTC+AGG | 0.520902 | 6.4:-13788512 | None:intergenic |
| AAGATGTGAAAGATATGATA+GGG | 0.521203 | 6.4:+13788804 | MS.gene85798:CDS |
| TTGTTGGAGGAATATGAATC+TGG | 0.521956 | 6.4:+13788830 | MS.gene85798:CDS |
| TGGAAGCAAAGTGCTTCAAA+TGG | 0.525673 | 6.4:+13788691 | MS.gene85798:CDS |
| GCGAGATCTTCAACAACTAC+AGG | 0.525699 | 6.4:-13788578 | None:intergenic |
| CTAAAGCGGCTTCCGAAGGT+TGG | 0.527037 | 6.4:+13788207 | MS.gene85798:CDS |
| AACGATGGACGTCCAAAGAA+AGG | 0.527199 | 6.4:+13786289 | MS.gene85798:CDS |
| TGGAAGTAGCAAACCAGGAT+GGG | 0.530192 | 6.4:+13788775 | MS.gene85798:CDS |
| GTTGATAAAGCAAAGAATGA+AGG | 0.531173 | 6.4:+13789106 | MS.gene85798:CDS |
| ATTCACCAAACTAGTCGAAT+CGG | 0.537156 | 6.4:+13787635 | MS.gene85798:CDS |
| GTGGAAGTAGCAAACCAGGA+TGG | 0.539492 | 6.4:+13788774 | MS.gene85798:CDS |
| ACACAAGCCAAATGTCAAAA+GGG | 0.540041 | 6.4:+13788105 | MS.gene85798:CDS |
| TGAAACACATAACCAACCTT+CGG | 0.544071 | 6.4:-13788219 | None:intergenic |
| AATCCTTTGTAAACTTGTGA+AGG | 0.549640 | 6.4:-13787615 | None:intergenic |
| AGTGAAAAGAGCTCTTATCA+TGG | 0.552908 | 6.4:+13788010 | MS.gene85798:CDS |
| TTAGGAGAAGAAAGTTGCAA+AGG | 0.555570 | 6.4:-13786190 | None:intergenic |
| GAAGCTAATAACATTAGCAA+TGG | 0.558746 | 6.4:+13788430 | MS.gene85798:CDS |
| TTTCTTTGGACGTCCATCGT+TGG | 0.560284 | 6.4:-13786287 | None:intergenic |
| TATGATAGGGAAATTGTTGG+AGG | 0.565030 | 6.4:+13788817 | MS.gene85798:CDS |
| AAGAGCTCTTATCATGGCGA+TGG | 0.566370 | 6.4:+13788016 | MS.gene85798:CDS |
| ATCATCGAGCGGCGTTGGGG+AGG | 0.567881 | 6.4:+13787852 | MS.gene85798:CDS |
| AAAGAAAACGAACATTGCGT+TGG | 0.568209 | 6.4:+13787380 | MS.gene85798:CDS |
| TCTGGTGGTAAAGGCACCTG+GGG | 0.570553 | 6.4:+13787091 | MS.gene85798:CDS |
| TCAACAACTAATGGCTAAAG+CGG | 0.571498 | 6.4:+13788193 | MS.gene85798:CDS |
| CACCCTTCACAAGTTTACAA+AGG | 0.573720 | 6.4:+13787612 | MS.gene85798:CDS |
| GCCGTTCACTTGCGCCTTTG+GGG | 0.575980 | 6.4:-13786224 | None:intergenic |
| TGTTTCAAGCAATCCACCCC+AGG | 0.576016 | 6.4:-13787107 | None:intergenic |
| TGTACAAGTCAAGATTCCAT+TGG | 0.580456 | 6.4:+13788671 | MS.gene85798:CDS |
| CTCGATATACCAAACGCGCG+TGG | 0.584149 | 6.4:+13788164 | MS.gene85798:CDS |
| CATTGTACAGGTGGTTCTGG+TGG | 0.587682 | 6.4:+13787076 | MS.gene85798:intron |
| TCTTTCAATAGTTCTAGTAA+GGG | 0.588911 | 6.4:-13788059 | None:intergenic |
| ATGGCTAAAGCGGCTTCCGA+AGG | 0.591062 | 6.4:+13788203 | MS.gene85798:CDS |
| TTGTGAAGGGTGAATTATGT+CGG | 0.594576 | 6.4:-13787601 | None:intergenic |
| ATAAAGCAAAGAATGAAGGA+TGG | 0.594889 | 6.4:+13789110 | MS.gene85798:CDS |
| CTCTAGCTATGAAAAGTGCT+AGG | 0.596430 | 6.4:-13787698 | None:intergenic |
| AGAATCTTGAGATGTTGGGG+TGG | 0.600770 | 6.4:+13788749 | MS.gene85798:CDS |
| GAAATCATCGAGCGGCGTTG+GGG | 0.610359 | 6.4:+13787849 | MS.gene85798:CDS |
| AAATGATTCTAAAGGAGCCG+AGG | 0.619338 | 6.4:+13787779 | MS.gene85798:CDS |
| AAATGTCAAAAGGGTTCACA+AGG | 0.623824 | 6.4:+13788114 | MS.gene85798:CDS |
| GAGAGAATCTTGAGATGTTG+GGG | 0.624381 | 6.4:+13788746 | MS.gene85798:CDS |
| CAGTTGATGATGTGAAAGCA+AGG | 0.625134 | 6.4:+13787889 | MS.gene85798:CDS |
| ATCCTTTGTAAACTTGTGAA+GGG | 0.631092 | 6.4:-13787614 | None:intergenic |
| TCGATGATTTCAGCGTGCAA+AGG | 0.631706 | 6.4:-13787837 | None:intergenic |
| TAAGTCACCAAGGTCCCCAA+AGG | 0.636212 | 6.4:+13786210 | MS.gene85798:CDS |
| CTTTGCCACAGATGATGTTG+TGG | 0.639840 | 6.4:+13787443 | MS.gene85798:CDS |
| ATCGAGCGATAAATCATCGA+CGG | 0.647255 | 6.4:-13788147 | None:intergenic |
| CAATCACATTCTTCCAACGA+TGG | 0.647421 | 6.4:+13786274 | MS.gene85798:CDS |
| TGTCATAGTTTGGATCATTG+GGG | 0.648251 | 6.4:-13787150 | None:intergenic |
| TGTTGCCACAACATCATCTG+TGG | 0.665084 | 6.4:-13787448 | None:intergenic |
| ATCGGCTGATGATTTGATCG+TGG | 0.666543 | 6.4:+13787653 | MS.gene85798:CDS |
| GATCGTGGATATACCGGACA+CGG | 0.671720 | 6.4:+13787668 | MS.gene85798:CDS |
| TTTCTTCTCCTAAGTCACCA+AGG | 0.676254 | 6.4:+13786200 | MS.gene85798:CDS |
| CCATTGACAACATCGTCAGG+TGG | 0.678939 | 6.4:-13788509 | None:intergenic |
| TGCACGCTGAAATCATCGAG+CGG | 0.697086 | 6.4:+13787841 | MS.gene85798:CDS |
| TTGGAGGAATATGAATCTGG+TGG | 0.719160 | 6.4:+13788833 | MS.gene85798:CDS |
| TCCAAACTATGACAGCACTG+AGG | 0.800309 | 6.4:+13787159 | MS.gene85798:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGTATATAAATTATACAA+GGG | + | chr6.4:13786636-13786655 | MS.gene85798:intron | 10.0% |
| !! | TTATGTATATAAATTATACA+AGG | + | chr6.4:13786635-13786654 | MS.gene85798:intron | 10.0% |
| !!! | ACTATTTATATTTTTTTTGT+AGG | + | chr6.4:13787338-13787357 | MS.gene85798:intron | 10.0% |
| !! | ATTAATAACTATGTATCAAA+TGG | + | chr6.4:13789000-13789019 | MS.gene85798:intron | 15.0% |
| !! | AATTTACCAAATGATTCTAA+AGG | + | chr6.4:13787771-13787790 | MS.gene85798:CDS | 20.0% |
| !! | ATTCAAGTCCAAAAAATAAT+AGG | + | chr6.4:13786251-13786270 | MS.gene85798:CDS | 20.0% |
| !! | GTTATATTCAAATCACATAT+CGG | - | chr6.4:13787034-13787053 | None:intergenic | 20.0% |
| !! | TCTATAGTAATAAAGACAAT+TGG | - | chr6.4:13786329-13786348 | None:intergenic | 20.0% |
| !!! | ACTGATTTTTTACTATTGAA+TGG | + | chr6.4:13786710-13786729 | MS.gene85798:intron | 20.0% |
| !!! | TGAATCTTGAATTATTTTGA+TGG | + | chr6.4:13786986-13787005 | MS.gene85798:intron | 20.0% |
| ! | AAAAGAAGAATGAAAGATTG+TGG | + | chr6.4:13788948-13788967 | MS.gene85798:intron | 25.0% |
| ! | AAAGAAGAATGAAAGATTGT+GGG | + | chr6.4:13788949-13788968 | MS.gene85798:intron | 25.0% |
| ! | AAAGAATAGAGAGAAAGAAA+TGG | + | chr6.4:13788457-13788476 | MS.gene85798:CDS | 25.0% |
| ! | AAGATGTGAAAGATATGATA+GGG | + | chr6.4:13788804-13788823 | MS.gene85798:CDS | 25.0% |
| ! | ACTATGTATCAAATGGTTAA+AGG | + | chr6.4:13789007-13789026 | MS.gene85798:intron | 25.0% |
| ! | ACTATTTCATGATGAAAGAA+AGG | - | chr6.4:13787993-13788012 | None:intergenic | 25.0% |
| ! | AGGATTTATCATAATGAAAC+AGG | - | chr6.4:13786879-13786898 | None:intergenic | 25.0% |
| ! | ATAAATAGTTGCATAGTTGT+TGG | - | chr6.4:13787327-13787346 | None:intergenic | 25.0% |
| ! | TTGAAAGAATATGTAGTAAG+TGG | + | chr6.4:13787924-13787943 | MS.gene85798:CDS | 25.0% |
| !!! | ATGCATATAGTTCTAAATTG+GGG | + | chr6.4:13786397-13786416 | MS.gene85798:intron | 25.0% |
| !!! | CATGCATATAGTTCTAAATT+GGG | + | chr6.4:13786396-13786415 | MS.gene85798:intron | 25.0% |
| !!! | TCTTTCAATAGTTCTAGTAA+GGG | - | chr6.4:13788062-13788081 | None:intergenic | 25.0% |
| !!! | TGTGATTGCCTATTATTTTT+TGG | - | chr6.4:13786262-13786281 | None:intergenic | 25.0% |
| !!! | TTCTTTCAATAGTTCTAGTA+AGG | - | chr6.4:13788063-13788082 | None:intergenic | 25.0% |
| AAAAGAATCTGACCATACAA+AGG | - | chr6.4:13786943-13786962 | None:intergenic | 30.0% | |
| AAATCAAAATATTGAGACCC+TGG | - | chr6.4:13786690-13786709 | None:intergenic | 30.0% | |
| AAGAAGAATGAAAGATTGTG+GGG | + | chr6.4:13788950-13788969 | MS.gene85798:intron | 30.0% | |
| AAGGTGATCCATATAAGTTT+AGG | - | chr6.4:13786911-13786930 | None:intergenic | 30.0% | |
| AATCCTTTGTAAACTTGTGA+AGG | - | chr6.4:13787618-13787637 | None:intergenic | 30.0% | |
| ACAAAATAGTAGCTGTATTC+TGG | - | chr6.4:13787501-13787520 | None:intergenic | 30.0% | |
| ACAACCTCATGATGAAAAAA+TGG | - | chr6.4:13788902-13788921 | None:intergenic | 30.0% | |
| ACACGACAAAGAAAAAGAAA+TGG | + | chr6.4:13787551-13787570 | MS.gene85798:CDS | 30.0% | |
| AGATATGATAGGGAAATTGT+TGG | + | chr6.4:13788814-13788833 | MS.gene85798:CDS | 30.0% | |
| ATAAAGCAAAGAATGAAGGA+TGG | + | chr6.4:13789110-13789129 | MS.gene85798:CDS | 30.0% | |
| ATCCTTTGTAAACTTGTGAA+GGG | - | chr6.4:13787617-13787636 | None:intergenic | 30.0% | |
| ATGTGATTTGAATATAACCG+TGG | + | chr6.4:13787036-13787055 | MS.gene85798:intron | 30.0% | |
| ATTCAGCACCTAAACTTATA+TGG | + | chr6.4:13786900-13786919 | MS.gene85798:intron | 30.0% | |
| CATACAAAGGTGACAAAAAA+AGG | - | chr6.4:13786930-13786949 | None:intergenic | 30.0% | |
| GAAGATGTGAAAGATATGAT+AGG | + | chr6.4:13788803-13788822 | MS.gene85798:CDS | 30.0% | |
| GAAGCTAATAACATTAGCAA+TGG | + | chr6.4:13788430-13788449 | MS.gene85798:CDS | 30.0% | |
| GATGGTTGAATCTTGAAAAT+AGG | + | chr6.4:13787004-13787023 | MS.gene85798:intron | 30.0% | |
| TATCAAATGGTTAAAGGCTT+TGG | + | chr6.4:13789013-13789032 | MS.gene85798:intron | 30.0% | |
| TGAGGTTGTTAAGAAAAGTT+TGG | + | chr6.4:13788913-13788932 | MS.gene85798:intron | 30.0% | |
| TGGAATACTTCAACAACTAA+TGG | + | chr6.4:13788184-13788203 | MS.gene85798:CDS | 30.0% | |
| TTCAAAATAGATACACACCA+GGG | - | chr6.4:13786837-13786856 | None:intergenic | 30.0% | |
| TTTCAAAATAGATACACACC+AGG | - | chr6.4:13786838-13786857 | None:intergenic | 30.0% | |
| ! | ACCAGGGATTTATATTGATT+GGG | - | chr6.4:13786821-13786840 | None:intergenic | 30.0% |
| ! | GTGTATTTGTTGCAATATCA+AGG | + | chr6.4:13786519-13786538 | MS.gene85798:intron | 30.0% |
| ! | GTTGATAAAGCAAAGAATGA+AGG | + | chr6.4:13789106-13789125 | MS.gene85798:CDS | 30.0% |
| ! | TCTTGTATTGTGTTCTTTTC+AGG | - | chr6.4:13788269-13788288 | None:intergenic | 30.0% |
| !! | ATTCAAGAGTACTTTCTATC+AGG | + | chr6.4:13788329-13788348 | MS.gene85798:CDS | 30.0% |
| !! | GCATGCATATAGTTCTAAAT+TGG | + | chr6.4:13786395-13786414 | MS.gene85798:intron | 30.0% |
| !!! | CTTAAAGAGTGTTTTGAATC+TGG | + | chr6.4:13788977-13788996 | MS.gene85798:intron | 30.0% |
| !!! | CTTTTTTTGTCACCTTTGTA+TGG | + | chr6.4:13786928-13786947 | MS.gene85798:intron | 30.0% |
| !!! | TATGCCATTTTTTCATCATG+AGG | + | chr6.4:13788895-13788914 | MS.gene85798:intron | 30.0% |
| AAAAACACTCCACCTTTCTT+TGG | - | chr6.4:13786304-13786323 | None:intergenic | 35.0% | |
| AAAGAAAACGAACATTGCGT+TGG | + | chr6.4:13787380-13787399 | MS.gene85798:CDS | 35.0% | |
| AAATGTCAAAAGGGTTCACA+AGG | + | chr6.4:13788114-13788133 | MS.gene85798:CDS | 35.0% | |
| AACACAAGCCAAATGTCAAA+AGG | + | chr6.4:13788104-13788123 | MS.gene85798:CDS | 35.0% | |
| AATTAAGGTTGCAATGTCGT+TGG | - | chr6.4:13786476-13786495 | None:intergenic | 35.0% | |
| ACACAAGCCAAATGTCAAAA+GGG | + | chr6.4:13788105-13788124 | MS.gene85798:CDS | 35.0% | |
| ACCCAATCAATATAAATCCC+TGG | + | chr6.4:13786817-13786836 | MS.gene85798:intron | 35.0% | |
| AGATTCACAAGATTCAACCA+CGG | - | chr6.4:13787056-13787075 | None:intergenic | 35.0% | |
| AGTGAAAAGAGCTCTTATCA+TGG | + | chr6.4:13788010-13788029 | MS.gene85798:CDS | 35.0% | |
| ATTCACCAAACTAGTCGAAT+CGG | + | chr6.4:13787635-13787654 | MS.gene85798:CDS | 35.0% | |
| CAAGAGAACAACAAAAACTG+TGG | + | chr6.4:13788383-13788402 | MS.gene85798:CDS | 35.0% | |
| CACCAGGGATTTATATTGAT+TGG | - | chr6.4:13786822-13786841 | None:intergenic | 35.0% | |
| CCAATATCTTCAAGCTGTTT+CGG | - | chr6.4:13788644-13788663 | None:intergenic | 35.0% | |
| CTGAGTGAAGTTAGAGAAAT+TGG | + | chr6.4:13787471-13787490 | MS.gene85798:CDS | 35.0% | |
| CTGTCATAGTTTGGATCATT+GGG | - | chr6.4:13787154-13787173 | None:intergenic | 35.0% | |
| GTCAAATTATCATCACGATG+AGG | - | chr6.4:13786593-13786612 | None:intergenic | 35.0% | |
| TATGATAGGGAAATTGTTGG+AGG | + | chr6.4:13788817-13788836 | MS.gene85798:CDS | 35.0% | |
| TCAACAACTAATGGCTAAAG+CGG | + | chr6.4:13788193-13788212 | MS.gene85798:CDS | 35.0% | |
| TCTTGTGAATCTCATTGTAC+AGG | + | chr6.4:13787064-13787083 | MS.gene85798:intron | 35.0% | |
| TGAAACACATAACCAACCTT+CGG | - | chr6.4:13788222-13788241 | None:intergenic | 35.0% | |
| TGAGAGAATCTTGAGATGTT+GGG | + | chr6.4:13788745-13788764 | MS.gene85798:CDS | 35.0% | |
| TGATTTGATCGTGGATATAC+CGG | + | chr6.4:13787662-13787681 | MS.gene85798:CDS | 35.0% | |
| TGTACAAGTCAAGATTCCAT+TGG | + | chr6.4:13788671-13788690 | MS.gene85798:CDS | 35.0% | |
| TGTAGATGCATGAAAGAGTT+AGG | + | chr6.4:13788872-13788891 | MS.gene85798:CDS | 35.0% | |
| TGTCATAGTTTGGATCATTG+GGG | - | chr6.4:13787153-13787172 | None:intergenic | 35.0% | |
| TTAGGAGAAGAAAGTTGCAA+AGG | - | chr6.4:13786193-13786212 | None:intergenic | 35.0% | |
| TTCAAGAATGCAACAGAGAA+TGG | + | chr6.4:13789151-13789170 | MS.gene85798:CDS | 35.0% | |
| TTGTGAAGGGTGAATTATGT+CGG | - | chr6.4:13787604-13787623 | None:intergenic | 35.0% | |
| TTGTTGGAGGAATATGAATC+TGG | + | chr6.4:13788830-13788849 | MS.gene85798:CDS | 35.0% | |
| ! | ATCTGGTGGTGATAAAAAAG+AGG | + | chr6.4:13788847-13788866 | MS.gene85798:CDS | 35.0% |
| ! | ATCTGTTTCTTCAAAAACGC+TGG | - | chr6.4:13787747-13787766 | None:intergenic | 35.0% |
| ! | TGAAGAAGCTCTTGATGATT+TGG | + | chr6.4:13789042-13789061 | MS.gene85798:CDS | 35.0% |
| ! | TTGTGAACCCTTTTGACATT+TGG | - | chr6.4:13788115-13788134 | None:intergenic | 35.0% |
| !! | ATAAGTTTAGGTGCTGAATG+AGG | - | chr6.4:13786899-13786918 | None:intergenic | 35.0% |
| !! | CGAGAAAGTATTTGTGTTCA+TGG | + | chr6.4:13786740-13786759 | MS.gene85798:intron | 35.0% |
| !! | CTCAGCTTTCTTTAAAACCT+CGG | - | chr6.4:13787799-13787818 | None:intergenic | 35.0% |
| AAACCATTGACAACATCGTC+AGG | - | chr6.4:13788515-13788534 | None:intergenic | 40.0% | |
| AAAGCTTGTCTCGATGTCAA+TGG | + | chr6.4:13787524-13787543 | MS.gene85798:CDS | 40.0% | |
| AACCTTAATTGCAGCCACAT+TGG | + | chr6.4:13786486-13786505 | MS.gene85798:intron | 40.0% | |
| AATATGTCGTGACTTAGACC+AGG | + | chr6.4:13786669-13786688 | MS.gene85798:intron | 40.0% | |
| ACATCTTCAATTTCCCATCC+TGG | - | chr6.4:13788791-13788810 | None:intergenic | 40.0% | |
| ATATGTCGTGACTTAGACCA+GGG | + | chr6.4:13786670-13786689 | MS.gene85798:intron | 40.0% | |
| ATCATCACGATGAGGAAAAG+TGG | - | chr6.4:13786585-13786604 | None:intergenic | 40.0% | |
| ATCGAGCGATAAATCATCGA+CGG | - | chr6.4:13788150-13788169 | None:intergenic | 40.0% | |
| CAATCACATTCTTCCAACGA+TGG | + | chr6.4:13786274-13786293 | MS.gene85798:CDS | 40.0% | |
| CACCCTTCACAAGTTTACAA+AGG | + | chr6.4:13787612-13787631 | MS.gene85798:CDS | 40.0% | |
| CCGAAACAGCTTGAAGATAT+TGG | + | chr6.4:13788641-13788660 | MS.gene85798:CDS | 40.0% | |
| CGCTATGTTTCTTGCAAGAT+CGG | + | chr6.4:13788598-13788617 | MS.gene85798:CDS | 40.0% | |
| GAGAGAATCTTGAGATGTTG+GGG | + | chr6.4:13788746-13788765 | MS.gene85798:CDS | 40.0% | |
| GCAACAAATACACGCAAATG+CGG | - | chr6.4:13786512-13786531 | None:intergenic | 40.0% | |
| GCTGTCATAGTTTGGATCAT+TGG | - | chr6.4:13787155-13787174 | None:intergenic | 40.0% | |
| GTGAGAGAATCTTGAGATGT+TGG | + | chr6.4:13788744-13788763 | MS.gene85798:CDS | 40.0% | |
| TATGCATGCTTATCACGTAG+AGG | - | chr6.4:13786384-13786403 | None:intergenic | 40.0% | |
| TGCAAAGGAGAAACAGTTAC+TGG | - | chr6.4:13786178-13786197 | None:intergenic | 40.0% | |
| TGTGAATCTCATTGTACAGG+TGG | + | chr6.4:13787067-13787086 | MS.gene85798:intron | 40.0% | |
| TGTTTCTTCAAAAACGCTGG+TGG | - | chr6.4:13787744-13787763 | None:intergenic | 40.0% | |
| TTGAAAGAAGCTGCTGAAGA+AGG | + | chr6.4:13788074-13788093 | MS.gene85798:CDS | 40.0% | |
| TTGCTAAAAGCAAGACTTGC+TGG | + | chr6.4:13788722-13788741 | MS.gene85798:CDS | 40.0% | |
| TTGGAGGAATATGAATCTGG+TGG | + | chr6.4:13788833-13788852 | MS.gene85798:CDS | 40.0% | |
| TTTCTTCTCCTAAGTCACCA+AGG | + | chr6.4:13786200-13786219 | MS.gene85798:CDS | 40.0% | |
| ! | AAATGATTCTAAAGGAGCCG+AGG | + | chr6.4:13787779-13787798 | MS.gene85798:CDS | 40.0% |
| ! | ACAGCACTGGATCAAATCTT+TGG | + | chr6.4:13787261-13787280 | MS.gene85798:intron | 40.0% |
| ! | ACTTTTCATAGCTAGAGCTG+TGG | + | chr6.4:13787704-13787723 | MS.gene85798:CDS | 40.0% |
| ! | AGCTCTTGATGATTTGGCTT+TGG | + | chr6.4:13789048-13789067 | MS.gene85798:CDS | 40.0% |
| ! | GCAAACTGATTCTTAGCATC+AGG | - | chr6.4:13789079-13789098 | None:intergenic | 40.0% |
| ! | TGGAAGCAAAGTGCTTCAAA+TGG | + | chr6.4:13788691-13788710 | MS.gene85798:CDS | 40.0% |
| ! | TTGAAGCACTTTGCTTCCAA+TGG | - | chr6.4:13788690-13788709 | None:intergenic | 40.0% |
| !! | CAGTTGATGATGTGAAAGCA+AGG | + | chr6.4:13787889-13787908 | MS.gene85798:CDS | 40.0% |
| !! | CTCTAGCTATGAAAAGTGCT+AGG | - | chr6.4:13787701-13787720 | None:intergenic | 40.0% |
| !! | TCGGCTCCTTTAGAATCATT+TGG | - | chr6.4:13787780-13787799 | None:intergenic | 40.0% |
| AACGATGGACGTCCAAAGAA+AGG | + | chr6.4:13786289-13786308 | MS.gene85798:CDS | 45.0% | |
| AAGAGCTCTTATCATGGCGA+TGG | + | chr6.4:13788016-13788035 | MS.gene85798:CDS | 45.0% | |
| AATCTTGAGATGTTGGGGTG+GGG | + | chr6.4:13788751-13788770 | MS.gene85798:CDS | 45.0% | |
| ACCTCAGTGCTGTCATAGTT+TGG | - | chr6.4:13787163-13787182 | None:intergenic | 45.0% | |
| AGAATCTTGAGATGTTGGGG+TGG | + | chr6.4:13788749-13788768 | MS.gene85798:CDS | 45.0% | |
| ATCGGCTGATGATTTGATCG+TGG | + | chr6.4:13787653-13787672 | MS.gene85798:CDS | 45.0% | |
| CTTTGCCACAGATGATGTTG+TGG | + | chr6.4:13787443-13787462 | MS.gene85798:CDS | 45.0% | |
| GAATCTTGAGATGTTGGGGT+GGG | + | chr6.4:13788750-13788769 | MS.gene85798:CDS | 45.0% | |
| GCACCTTGATATGATAGCTG+CGG | - | chr6.4:13786563-13786582 | None:intergenic | 45.0% | |
| GCGAGATCTTCAACAACTAC+AGG | - | chr6.4:13788581-13788600 | None:intergenic | 45.0% | |
| TCCAAACTATGACAGCACTG+AGG | + | chr6.4:13787159-13787178 | MS.gene85798:CDS | 45.0% | |
| TCGATGATTTCAGCGTGCAA+AGG | - | chr6.4:13787840-13787859 | None:intergenic | 45.0% | |
| TCGCGAATTCTGCTATGCAA+CGG | - | chr6.4:13787231-13787250 | None:intergenic | 45.0% | |
| TCTCATTGTACAGGTGGTTC+TGG | + | chr6.4:13787073-13787092 | MS.gene85798:intron | 45.0% | |
| TGATCCAGTGCTGTCAATAG+AGG | - | chr6.4:13787255-13787274 | None:intergenic | 45.0% | |
| TGGAAGTAGCAAACCAGGAT+GGG | + | chr6.4:13788775-13788794 | MS.gene85798:CDS | 45.0% | |
| TGTTGCCACAACATCATCTG+TGG | - | chr6.4:13787451-13787470 | None:intergenic | 45.0% | |
| TTTCTTTGGACGTCCATCGT+TGG | - | chr6.4:13786290-13786309 | None:intergenic | 45.0% | |
| !! | ATCAGCCGATTCGACTAGTT+TGG | - | chr6.4:13787643-13787662 | None:intergenic | 45.0% |
| ATCTTGAGATGTTGGGGTGG+GGG | + | chr6.4:13788752-13788771 | MS.gene85798:CDS | 50.0% | |
| CAGCCGCAGCTATCATATCA+AGG | + | chr6.4:13786557-13786576 | MS.gene85798:intron | 50.0% | |
| CCACCTGACGATGTTGTCAA+TGG | + | chr6.4:13788509-13788528 | MS.gene85798:CDS | 50.0% | |
| CCATTGACAACATCGTCAGG+TGG | - | chr6.4:13788512-13788531 | None:intergenic | 50.0% | |
| CGATCCTCTATTGACAGCAC+TGG | + | chr6.4:13787248-13787267 | MS.gene85798:intron | 50.0% | |
| GATCGTGGATATACCGGACA+CGG | + | chr6.4:13787668-13787687 | MS.gene85798:CDS | 50.0% | |
| GATGGACGTCCAAAGAAAGG+TGG | + | chr6.4:13786292-13786311 | MS.gene85798:intron | 50.0% | |
| GCTAGGATATCAACCGTGTC+CGG | - | chr6.4:13787684-13787703 | None:intergenic | 50.0% | |
| GGCCAATGTGGCTGCAATTA+AGG | - | chr6.4:13786491-13786510 | None:intergenic | 50.0% | |
| GGGGTCTGCAACTGTAATTG+CGG | + | chr6.4:13786416-13786435 | MS.gene85798:intron | 50.0% | |
| GGTTGCAATGTCGTTGGACT+TGG | - | chr6.4:13786470-13786489 | None:intergenic | 50.0% | |
| GTGGAAGTAGCAAACCAGGA+TGG | + | chr6.4:13788774-13788793 | MS.gene85798:CDS | 50.0% | |
| TAAGTCACCAAGGTCCCCAA+AGG | + | chr6.4:13786210-13786229 | MS.gene85798:CDS | 50.0% | |
| TGAAATCATCGAGCGGCGTT+GGG | + | chr6.4:13787848-13787867 | MS.gene85798:CDS | 50.0% | |
| TGCACGCTGAAATCATCGAG+CGG | + | chr6.4:13787841-13787860 | MS.gene85798:CDS | 50.0% | |
| TGTTTCAAGCAATCCACCCC+AGG | - | chr6.4:13787110-13787129 | None:intergenic | 50.0% | |
| ! | TGAAGTATTCCACGCGCGTT+TGG | - | chr6.4:13788176-13788195 | None:intergenic | 50.0% |
| ! | TTTGGGGACCTTGGTGACTT+AGG | - | chr6.4:13786211-13786230 | None:intergenic | 50.0% |
| !! | ACAGGTGGTTCTGGTGGTAA+AGG | + | chr6.4:13787082-13787101 | MS.gene85798:intron | 50.0% |
| !! | CATTGTACAGGTGGTTCTGG+TGG | + | chr6.4:13787076-13787095 | MS.gene85798:intron | 50.0% |
| !! | TTCTGGTGGTAAAGGCACCT+GGG | + | chr6.4:13787090-13787109 | MS.gene85798:CDS | 50.0% |
| ACACGCAAATGCGGCCAATG+TGG | - | chr6.4:13786503-13786522 | None:intergenic | 55.0% | |
| ATGGCTAAAGCGGCTTCCGA+AGG | + | chr6.4:13788203-13788222 | MS.gene85798:CDS | 55.0% | |
| CTAAAGCGGCTTCCGAAGGT+TGG | + | chr6.4:13788207-13788226 | MS.gene85798:CDS | 55.0% | |
| CTCGATATACCAAACGCGCG+TGG | + | chr6.4:13788164-13788183 | MS.gene85798:CDS | 55.0% | |
| CTGAAATCATCGAGCGGCGT+TGG | + | chr6.4:13787847-13787866 | MS.gene85798:CDS | 55.0% | |
| GAAATCATCGAGCGGCGTTG+GGG | + | chr6.4:13787849-13787868 | MS.gene85798:CDS | 55.0% | |
| TGCCGTTCACTTGCGCCTTT+GGG | - | chr6.4:13786228-13786247 | None:intergenic | 55.0% | |
| ! | TCCCCAAAGGCGCAAGTGAA+CGG | + | chr6.4:13786223-13786242 | MS.gene85798:CDS | 55.0% |
| !! | GTTCTGGTGGTAAAGGCACC+TGG | + | chr6.4:13787089-13787108 | MS.gene85798:CDS | 55.0% |
| !! | TCTGGTGGTAAAGGCACCTG+GGG | + | chr6.4:13787091-13787110 | MS.gene85798:CDS | 55.0% |
| CTGCCGTTCACTTGCGCCTT+TGG | - | chr6.4:13786229-13786248 | None:intergenic | 60.0% | |
| GCCGTTCACTTGCGCCTTTG+GGG | - | chr6.4:13786227-13786246 | None:intergenic | 60.0% | |
| GGGGGTGGAAGTAGCAAACC+AGG | + | chr6.4:13788770-13788789 | MS.gene85798:CDS | 60.0% | |
| TTGAGATGTTGGGGTGGGGG+TGG | + | chr6.4:13788755-13788774 | MS.gene85798:CDS | 60.0% | |
| ! | ACTTGCGCCTTTGGGGACCT+TGG | - | chr6.4:13786220-13786239 | None:intergenic | 60.0% |
| ! | ATCATCGAGCGGCGTTGGGG+AGG | + | chr6.4:13787852-13787871 | MS.gene85798:CDS | 65.0% |
| !! | GGTGGTAAAGGCACCTGGGG+TGG | + | chr6.4:13787094-13787113 | MS.gene85798:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 13786103 | 13789183 | 13786103 | ID=MS.gene85798 |
| chr6.4 | mRNA | 13786103 | 13789183 | 13786103 | ID=MS.gene85798.t1;Parent=MS.gene85798 |
| chr6.4 | exon | 13786103 | 13786310 | 13786103 | ID=MS.gene85798.t1.exon1;Parent=MS.gene85798.t1 |
| chr6.4 | CDS | 13786103 | 13786310 | 13786103 | ID=cds.MS.gene85798.t1;Parent=MS.gene85798.t1 |
| chr6.4 | exon | 13787086 | 13787180 | 13787086 | ID=MS.gene85798.t1.exon2;Parent=MS.gene85798.t1 |
| chr6.4 | CDS | 13787086 | 13787180 | 13787086 | ID=cds.MS.gene85798.t1;Parent=MS.gene85798.t1 |
| chr6.4 | exon | 13787360 | 13788893 | 13787360 | ID=MS.gene85798.t1.exon3;Parent=MS.gene85798.t1 |
| chr6.4 | CDS | 13787360 | 13788893 | 13787360 | ID=cds.MS.gene85798.t1;Parent=MS.gene85798.t1 |
| chr6.4 | exon | 13789029 | 13789183 | 13789029 | ID=MS.gene85798.t1.exon4;Parent=MS.gene85798.t1 |
| chr6.4 | CDS | 13789029 | 13789183 | 13789029 | ID=cds.MS.gene85798.t1;Parent=MS.gene85798.t1 |
| Gene Sequence |
| Protein sequence |
