Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85870.t1 | XP_003613914.1 | 97.3 | 565 | 15 | 0 | 1 | 565 | 147 | 711 | 5.00E-303 | 1049.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85870.t1 | F4I248 | 59.4 | 569 | 218 | 6 | 1 | 563 | 146 | 707 | 1.1e-181 | 637.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85870.t1 | G7JWK0 | 97.3 | 565 | 15 | 0 | 1 | 565 | 147 | 711 | 3.6e-303 | 1049.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050743 | MS.gene85870 | 0.800498 | 1.40E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 112 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTATATGATTATTTCTT+TGG | 0.195879 | 5.3:-29876963 | None:intergenic |
| ATGAAACTGCAGGAAAATTT+TGG | 0.218618 | 5.3:+29880406 | MS.gene85870:CDS |
| CTTGTTCCTACGTCCATTCC+TGG | 0.236932 | 5.3:+29878671 | MS.gene85870:CDS |
| CTGAATCGTTCATACAAATA+TGG | 0.252127 | 5.3:+29877319 | MS.gene85870:CDS |
| GGGAATGCTGTTAACTAAAA+TGG | 0.259554 | 5.3:-29876407 | None:intergenic |
| TCCTTGTGGTATGGCATATA+TGG | 0.269568 | 5.3:-29879330 | None:intergenic |
| AGCATCAAGCTGAAGATATA+AGG | 0.292234 | 5.3:-29881144 | None:intergenic |
| TCTTCAGTTGTTTCTGCAAC+TGG | 0.296051 | 5.3:+29878490 | MS.gene85870:CDS |
| GTTATCAAATTAACAATATA+CGG | 0.297709 | 5.3:-29879270 | None:intergenic |
| GAGCTGCATTTGTATTCTTC+AGG | 0.323144 | 5.3:+29877187 | MS.gene85870:CDS |
| AAGTGTTGTGGTTCACGATA+TGG | 0.323150 | 5.3:+29878591 | MS.gene85870:CDS |
| AGCGCTGTATATGTTGTAAC+TGG | 0.325945 | 5.3:+29875701 | MS.gene85870:CDS |
| CAGAACCTCGTGATGTTTAC+TGG | 0.327197 | 5.3:+29877286 | MS.gene85870:CDS |
| TGCAAACAATATGTACAAAA+AGG | 0.344276 | 5.3:+29876873 | MS.gene85870:CDS |
| GCAGAGTATCCAACAAATAT+TGG | 0.357104 | 5.3:-29880588 | None:intergenic |
| TTGCTTAATCTTCTGCTTAG+TGG | 0.366121 | 5.3:-29876917 | None:intergenic |
| CAGTAAACATCACGAGGTTC+TGG | 0.371202 | 5.3:-29877285 | None:intergenic |
| TGCTTAATCTTCTGCTTAGT+GGG | 0.384202 | 5.3:-29876916 | None:intergenic |
| ATCTTCTGCTTAGTGGGATC+TGG | 0.386673 | 5.3:-29876910 | None:intergenic |
| TAACAATATACGGAAATATA+CGG | 0.388159 | 5.3:-29879260 | None:intergenic |
| ACAAATATGGATTTCTAAGT+TGG | 0.389165 | 5.3:+29877332 | MS.gene85870:CDS |
| CAGTCAATGTAGGATCATTC+TGG | 0.390022 | 5.3:-29881033 | None:intergenic |
| CGATTCCTACCAATATTTGT+TGG | 0.390515 | 5.3:+29880579 | MS.gene85870:CDS |
| AGAAGTGTGAGGAGCGGTAG+AGG | 0.394362 | 5.3:-29880534 | None:intergenic |
| GCAACTGGTGCCTCCTACCA+TGG | 0.396513 | 5.3:+29878505 | MS.gene85870:CDS |
| TTGTTTGATGAGTATTGAAT+TGG | 0.398390 | 5.3:-29881103 | None:intergenic |
| GCGTTATGAAAAGCAGTTAG+AGG | 0.399408 | 5.3:+29876984 | MS.gene85870:CDS |
| GAAGCAGTCAGAGGCTTCAT+TGG | 0.399655 | 5.3:+29877029 | MS.gene85870:CDS |
| TGCTTATAAAGATCCTGCTT+TGG | 0.403898 | 5.3:+29881078 | MS.gene85870:CDS |
| TTTGTGAGTCAGATAATTAC+CGG | 0.405729 | 5.3:+29878449 | MS.gene85870:CDS |
| ATTACTTATGTTGTCACGTC+AGG | 0.407545 | 5.3:+29879210 | MS.gene85870:CDS |
| GGAAGTTCAAATTCATCATC+TGG | 0.408501 | 5.3:-29879309 | None:intergenic |
| GAGTTCCTTTCCACTATTCA+AGG | 0.416827 | 5.3:+29878527 | MS.gene85870:CDS |
| CAGTCAGAGGCTTCATTGGC+AGG | 0.430062 | 5.3:+29877033 | MS.gene85870:CDS |
| GCATCAAGCTGAAGATATAA+GGG | 0.432053 | 5.3:-29881143 | None:intergenic |
| GATGTATGCAAGACAAAAGT+AGG | 0.441916 | 5.3:-29879433 | None:intergenic |
| AGAGTTTGATAAAGAAGGAC+AGG | 0.456610 | 5.3:+29881005 | MS.gene85870:intron |
| GTTTCAGAGTTTGATAAAGA+AGG | 0.457817 | 5.3:+29881000 | MS.gene85870:intron |
| AGCAATTGTGGTTCCAGCAC+AGG | 0.458330 | 5.3:+29878700 | MS.gene85870:CDS |
| TCCTGGGAAGTTAGCAATTG+TGG | 0.460106 | 5.3:+29878688 | MS.gene85870:CDS |
| GTACCTGTAGTCTTCGTACA+AGG | 0.471576 | 5.3:+29877396 | MS.gene85870:CDS |
| AGCTGAAGATATAAGGGGAC+TGG | 0.481068 | 5.3:-29881137 | None:intergenic |
| AAAGCAGTTAGAGGAGATTG+AGG | 0.483096 | 5.3:+29876993 | MS.gene85870:CDS |
| TTTCCTGCAGTTTCATACCT+TGG | 0.485192 | 5.3:-29880399 | None:intergenic |
| TATTGAATTGGAACCAAAGC+AGG | 0.486884 | 5.3:-29881091 | None:intergenic |
| GAACATCGTCTAACCTGTGC+TGG | 0.492706 | 5.3:-29878713 | None:intergenic |
| TACCAAGAAGTCCAAAGAAA+AGG | 0.494350 | 5.3:-29879365 | None:intergenic |
| AGGACGAATGGTAAAATTAG+TGG | 0.499178 | 5.3:-29879408 | None:intergenic |
| GGTTAGAATGCTCGTCAAGA+AGG | 0.505080 | 5.3:-29877454 | None:intergenic |
| AATCAGACTGGGAAGATATC+CGG | 0.515650 | 5.3:-29878468 | None:intergenic |
| AGTCCAAAGAAAAGGACCCT+TGG | 0.516540 | 5.3:-29879357 | None:intergenic |
| GATTGACTGATTGCTGCAAA+TGG | 0.519835 | 5.3:-29877236 | None:intergenic |
| TTGTTCCTACGTCCATTCCT+GGG | 0.523493 | 5.3:+29878672 | MS.gene85870:CDS |
| ACTAAAATGGCGAACTGATG+AGG | 0.531824 | 5.3:-29876394 | None:intergenic |
| CAAAAGTAGGCCAGGACGAA+TGG | 0.533002 | 5.3:-29879420 | None:intergenic |
| AATTGCTAACTTCCCAGGAA+TGG | 0.536134 | 5.3:-29878684 | None:intergenic |
| ACCACAATTGCTAACTTCCC+AGG | 0.536901 | 5.3:-29878689 | None:intergenic |
| TGATAAAACTCAGTCAATGT+AGG | 0.537762 | 5.3:-29881043 | None:intergenic |
| AAACAACTGAAGAATCAGAC+TGG | 0.543408 | 5.3:-29878480 | None:intergenic |
| TTCTTCTTATCTGTCACATG+TGG | 0.551345 | 5.3:+29876486 | MS.gene85870:CDS |
| CTTGGAATATCCTTGTGGTA+TGG | 0.551593 | 5.3:-29879339 | None:intergenic |
| ATGCAAGACAAAAGTAGGCC+AGG | 0.563604 | 5.3:-29879428 | None:intergenic |
| GTTAGAATGCTCGTCAAGAA+GGG | 0.564212 | 5.3:-29877453 | None:intergenic |
| GAACTGATGAGGCTGTGGTT+TGG | 0.565303 | 5.3:-29876383 | None:intergenic |
| ACATGTGACAGATAAGAAGA+AGG | 0.565977 | 5.3:-29876484 | None:intergenic |
| CACACAGTGGATTACTGAGT+TGG | 0.566047 | 5.3:+29877260 | MS.gene85870:CDS |
| ATATTGTTAATTTGATAACA+AGG | 0.570496 | 5.3:+29879274 | MS.gene85870:CDS |
| TGAGATGTATCCTTGAATAG+TGG | 0.575151 | 5.3:-29878537 | None:intergenic |
| ATGGTAAAATTAGTGGAGCT+AGG | 0.581194 | 5.3:-29879401 | None:intergenic |
| AGCCCTTGTACGAAGACTAC+AGG | 0.581325 | 5.3:-29877399 | None:intergenic |
| CAGGAATGGACGTAGGAACA+AGG | 0.583704 | 5.3:-29878670 | None:intergenic |
| AAGCAAACTCCGAAGTCTTG+TGG | 0.584464 | 5.3:+29876522 | MS.gene85870:CDS |
| ATCATTGAATTGTGCACAGT+AGG | 0.586517 | 5.3:-29880429 | None:intergenic |
| GCACCAAGGTATGAAACTGC+AGG | 0.587071 | 5.3:+29880396 | MS.gene85870:CDS |
| AGTATCCAACAAATATTGGT+AGG | 0.589012 | 5.3:-29880584 | None:intergenic |
| TACCTGTAGTCTTCGTACAA+GGG | 0.592584 | 5.3:+29877397 | MS.gene85870:CDS |
| CTTATGTTGTCACGTCAGGA+TGG | 0.593934 | 5.3:+29879214 | MS.gene85870:CDS |
| AATAGTGGAAAGGAACTCCA+TGG | 0.594835 | 5.3:-29878522 | None:intergenic |
| ACTGATGCTGCTAGAAGAAG+TGG | 0.597186 | 5.3:-29876428 | None:intergenic |
| CTCATGCACATCATTGCAGT+GGG | 0.600223 | 5.3:+29880465 | MS.gene85870:CDS |
| CATGTGACAGATAAGAAGAA+GGG | 0.600876 | 5.3:-29876483 | None:intergenic |
| GTACGAAGACTACAGGTACA+AGG | 0.607019 | 5.3:-29877392 | None:intergenic |
| GAAAGGAACTCCATGGTAGG+AGG | 0.607458 | 5.3:-29878515 | None:intergenic |
| CATACCACAAGGATATTCCA+AGG | 0.608549 | 5.3:+29879340 | MS.gene85870:CDS |
| TGTAAGATTGAAGCAGTCAG+AGG | 0.613333 | 5.3:+29877020 | MS.gene85870:CDS |
| TGTATCCTTGAATAGTGGAA+AGG | 0.614651 | 5.3:-29878532 | None:intergenic |
| ATGAACGATTCAGAGAAGAA+AGG | 0.617085 | 5.3:-29877309 | None:intergenic |
| AACAACTGAAGAATCAGACT+GGG | 0.617717 | 5.3:-29878479 | None:intergenic |
| CTGCAAATGGAAAGCAGCTG+CGG | 0.622383 | 5.3:-29877223 | None:intergenic |
| TCCATATATGCCATACCACA+AGG | 0.625470 | 5.3:+29879329 | MS.gene85870:CDS |
| AACTCAGTAATCCACTGTGT+GGG | 0.628942 | 5.3:-29877258 | None:intergenic |
| ATGGCGAACTGATGAGGCTG+TGG | 0.629697 | 5.3:-29876388 | None:intergenic |
| TAATCCTTACCACAAGACTT+CGG | 0.631748 | 5.3:-29876531 | None:intergenic |
| GTGGAAAGGAACTCCATGGT+AGG | 0.634072 | 5.3:-29878518 | None:intergenic |
| ACTCATGCACATCATTGCAG+TGG | 0.638792 | 5.3:+29880464 | MS.gene85870:CDS |
| GAGTTTGATAAAGAAGGACA+GGG | 0.643452 | 5.3:+29881006 | MS.gene85870:intron |
| GAGCGGTAGAGGAAGCGTCA+AGG | 0.644469 | 5.3:-29880523 | None:intergenic |
| ACTAAGCAGAAGATTAAGCA+AGG | 0.653825 | 5.3:+29876919 | MS.gene85870:CDS |
| CAACTCAGTAATCCACTGTG+TGG | 0.657626 | 5.3:-29877259 | None:intergenic |
| AATGGACGTAGGAACAAGGA+TGG | 0.664081 | 5.3:-29878666 | None:intergenic |
| ACTCATTAAATAGAAGTGTG+AGG | 0.665513 | 5.3:-29880545 | None:intergenic |
| GGACCCTTGGAATATCCTTG+TGG | 0.671922 | 5.3:-29879344 | None:intergenic |
| ATTTGTTGGATACTCTGCCG+AGG | 0.675968 | 5.3:+29880593 | MS.gene85870:CDS |
| CTGATGCTGCTAGAAGAAGT+GGG | 0.676042 | 5.3:-29876427 | None:intergenic |
| CATCAAGCTGAAGATATAAG+GGG | 0.681836 | 5.3:-29881142 | None:intergenic |
| ATACCACAAGGATATTCCAA+GGG | 0.696321 | 5.3:+29879341 | MS.gene85870:CDS |
| GTGCAACTACTAAAGTGTTG+TGG | 0.708263 | 5.3:+29878579 | MS.gene85870:CDS |
| TTAAATAGAAGTGTGAGGAG+CGG | 0.708888 | 5.3:-29880540 | None:intergenic |
| AAAGGCCAGTAAACATCACG+AGG | 0.723171 | 5.3:-29877291 | None:intergenic |
| TTATGAATGTATATGCACCA+AGG | 0.730805 | 5.3:+29880382 | MS.gene85870:CDS |
| AACTTCCCAGGAATGGACGT+AGG | 0.743459 | 5.3:-29878677 | None:intergenic |
| AATCAGTCAATCCCACACAG+TGG | 0.789182 | 5.3:+29877247 | MS.gene85870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAGAAAATTAATAAGAA+TGG | - | chr5.3:29876231-29876250 | None:intergenic | 10.0% |
| !! | ATTAATTGAAATATATAAGT+AGG | + | chr5.3:29876249-29876268 | MS.gene85870:intron | 10.0% |
| !!! | AAAAAATATTGATTATGAAT+TGG | - | chr5.3:29879128-29879147 | None:intergenic | 10.0% |
| !! | AAAAAATTGATTATCAAGAA+AGG | - | chr5.3:29876573-29876592 | None:intergenic | 15.0% |
| !! | AAATTCAAATAGTTAAAAGA+AGG | - | chr5.3:29877116-29877135 | None:intergenic | 15.0% |
| !! | AATTTATTAACAATAGTCAT+TGG | - | chr5.3:29878237-29878256 | None:intergenic | 15.0% |
| !! | GTTATCAAATTAACAATATA+CGG | - | chr5.3:29879273-29879292 | None:intergenic | 15.0% |
| !!! | ATATCTATTTATTTCTAGAA+GGG | + | chr5.3:29879481-29879500 | MS.gene85870:intron | 15.0% |
| !!! | ATATTGTTAATTTGATAACA+AGG | + | chr5.3:29879274-29879293 | MS.gene85870:CDS | 15.0% |
| !!! | TATATCTATTTATTTCTAGA+AGG | + | chr5.3:29879480-29879499 | MS.gene85870:intron | 15.0% |
| !!! | TATTTTCTAAATAATAGAGT+TGG | - | chr5.3:29878268-29878287 | None:intergenic | 15.0% |
| !!! | TTCTATATTTTACATTTTCT+TGG | + | chr5.3:29876591-29876610 | MS.gene85870:intron | 15.0% |
| !! | AATAATATTGAGAAATGAGT+AGG | - | chr5.3:29876306-29876325 | None:intergenic | 20.0% |
| !! | AATAATTGAAGTATGATGTT+TGG | + | chr5.3:29879775-29879794 | MS.gene85870:intron | 20.0% |
| !! | ACTAAAAAACCCAAATTAAT+TGG | - | chr5.3:29878907-29878926 | None:intergenic | 20.0% |
| !! | ATTAGGAAAAAAAATTCCAT+AGG | - | chr5.3:29875772-29875791 | None:intergenic | 20.0% |
| !! | CACAAGTAATAATTGAATTA+TGG | + | chr5.3:29877744-29877763 | MS.gene85870:intron | 20.0% |
| !! | CATAATTAATGTGGTTTAAA+AGG | - | chr5.3:29875821-29875840 | None:intergenic | 20.0% |
| !! | CCATTATAAAACAAAAGATA+AGG | + | chr5.3:29878740-29878759 | MS.gene85870:intron | 20.0% |
| !! | CTTAATTTCATATTAACTTC+TGG | - | chr5.3:29879844-29879863 | None:intergenic | 20.0% |
| !! | TAAAACAAAAGATAAGGTTA+CGG | + | chr5.3:29878746-29878765 | MS.gene85870:intron | 20.0% |
| !! | TAAAATATGAAGATAGATGA+AGG | - | chr5.3:29875796-29875815 | None:intergenic | 20.0% |
| !! | TAACAATATACGGAAATATA+CGG | - | chr5.3:29879263-29879282 | None:intergenic | 20.0% |
| !! | TAATATTCAGCACTATAATA+TGG | + | chr5.3:29880272-29880291 | MS.gene85870:intron | 20.0% |
| !! | TACCTAAAATGATACTTATA+TGG | + | chr5.3:29878971-29878990 | MS.gene85870:intron | 20.0% |
| !! | TCAACTATTCCAATTAATTT+GGG | + | chr5.3:29878895-29878914 | MS.gene85870:intron | 20.0% |
| !! | TCAATATTATTTCAATCTTC+AGG | + | chr5.3:29876315-29876334 | MS.gene85870:intron | 20.0% |
| !! | TGCATCAATATATTACTTAT+TGG | - | chr5.3:29877697-29877716 | None:intergenic | 20.0% |
| !! | TTAAAAGGTCATAATTAATG+TGG | - | chr5.3:29875830-29875849 | None:intergenic | 20.0% |
| !! | TTCAACTATTCCAATTAATT+TGG | + | chr5.3:29878894-29878913 | MS.gene85870:intron | 20.0% |
| !! | TTTGAGAAAAAGAATTTAGT+TGG | + | chr5.3:29880220-29880239 | MS.gene85870:intron | 20.0% |
| !!! | AATAATTTGTGTTTGATTGT+AGG | + | chr5.3:29879176-29879195 | MS.gene85870:intron | 20.0% |
| !!! | ATCAAAGGCATATATTAATA+AGG | + | chr5.3:29878060-29878079 | MS.gene85870:intron | 20.0% |
| !!! | CATTTTCTTTTATGTCTATT+TGG | - | chr5.3:29880904-29880923 | None:intergenic | 20.0% |
| !!! | CCTTATCTTTTGTTTTATAA+TGG | - | chr5.3:29878743-29878762 | None:intergenic | 20.0% |
| !!! | TAAGCTATTTCTATATCAAA+AGG | + | chr5.3:29875946-29875965 | MS.gene85870:intron | 20.0% |
| !!! | TCAAAGGCATATATTAATAA+GGG | + | chr5.3:29878061-29878080 | MS.gene85870:intron | 20.0% |
| ! | AACTAAGTTGTTACCTAAAT+AGG | - | chr5.3:29875886-29875905 | None:intergenic | 25.0% |
| ! | AAGTACGTAAAAAAATGAAG+AGG | + | chr5.3:29880097-29880116 | MS.gene85870:intron | 25.0% |
| ! | AATAGATATAAATGCTTACC+TGG | - | chr5.3:29879470-29879489 | None:intergenic | 25.0% |
| ! | ACAAATATGGATTTCTAAGT+TGG | + | chr5.3:29877332-29877351 | MS.gene85870:CDS | 25.0% |
| ! | ACACAATATTAACAAACACT+AGG | - | chr5.3:29879679-29879698 | None:intergenic | 25.0% |
| ! | ACTAAGTTGTTACCTAAATA+GGG | - | chr5.3:29875885-29875904 | None:intergenic | 25.0% |
| ! | AGGTGAACTATTTAATTAGA+TGG | - | chr5.3:29878853-29878872 | None:intergenic | 25.0% |
| ! | ATAAACCAAGTTAACTTACA+TGG | - | chr5.3:29877478-29877497 | None:intergenic | 25.0% |
| ! | ATAAGCTGAAAACAACTTAT+AGG | - | chr5.3:29880749-29880768 | None:intergenic | 25.0% |
| ! | ATACATCATTTACAAAAACC+AGG | + | chr5.3:29879449-29879468 | MS.gene85870:CDS | 25.0% |
| ! | ATGACATTTGATTATGTACT+CGG | + | chr5.3:29880184-29880203 | MS.gene85870:intron | 25.0% |
| ! | ATTGAGGAATTCAAAAGATA+GGG | - | chr5.3:29876844-29876863 | None:intergenic | 25.0% |
| ! | CACAAATCTACAAAATTATG+CGG | - | chr5.3:29876643-29876662 | None:intergenic | 25.0% |
| ! | CTACTTTGCAAAACTTAAAA+AGG | - | chr5.3:29879867-29879886 | None:intergenic | 25.0% |
| ! | GAAGTATATGAGTTCAAATA+AGG | + | chr5.3:29876100-29876119 | MS.gene85870:intron | 25.0% |
| ! | GATACCAAAAAAAAGATACA+TGG | - | chr5.3:29876139-29876158 | None:intergenic | 25.0% |
| ! | GGTGAACTATTTAATTAGAT+GGG | - | chr5.3:29878852-29878871 | None:intergenic | 25.0% |
| ! | GTGAACTATTTAATTAGATG+GGG | - | chr5.3:29878851-29878870 | None:intergenic | 25.0% |
| ! | GTGATGAGTAATATCTATTA+TGG | + | chr5.3:29875859-29875878 | MS.gene85870:intron | 25.0% |
| ! | GTGCTGAATATTATATTTCA+AGG | - | chr5.3:29880265-29880284 | None:intergenic | 25.0% |
| ! | TAATTAGATGGGGATATTAT+AGG | - | chr5.3:29878841-29878860 | None:intergenic | 25.0% |
| ! | TATAAAGAACAGATGCAATT+AGG | - | chr5.3:29879571-29879590 | None:intergenic | 25.0% |
| ! | TATTTACACTTTACTCACTT+TGG | + | chr5.3:29878161-29878180 | MS.gene85870:intron | 25.0% |
| ! | TGCAAACAATATGTACAAAA+AGG | + | chr5.3:29876873-29876892 | MS.gene85870:CDS | 25.0% |
| !! | ACTTTACTTTAGTCTTCTAA+AGG | + | chr5.3:29876616-29876635 | MS.gene85870:intron | 25.0% |
| !! | CATCACATTTTCATCTTAAA+AGG | - | chr5.3:29875845-29875864 | None:intergenic | 25.0% |
| !! | CTCCATATAAGTATCATTTT+AGG | - | chr5.3:29878976-29878995 | None:intergenic | 25.0% |
| !! | CTTTACTTTAGTCTTCTAAA+GGG | + | chr5.3:29876617-29876636 | MS.gene85870:intron | 25.0% |
| !! | GCTCTATATGATTATTTCTT+TGG | - | chr5.3:29876966-29876985 | None:intergenic | 25.0% |
| !! | TAATTGACCTTTTCTTTACT+AGG | + | chr5.3:29879698-29879717 | MS.gene85870:intron | 25.0% |
| !! | TCAAATTTCTTCACTCATTT+TGG | - | chr5.3:29880072-29880091 | None:intergenic | 25.0% |
| !! | TCTTTTCAATGACATGTATA+AGG | + | chr5.3:29876741-29876760 | MS.gene85870:intron | 25.0% |
| !!! | TCACTCAGATATTTTTTGTT+TGG | - | chr5.3:29879604-29879623 | None:intergenic | 25.0% |
| !!! | TCTTTTGTTTTATAATGGAG+AGG | - | chr5.3:29878738-29878757 | None:intergenic | 25.0% |
| !!! | TTGTTTGATGAGTATTGAAT+TGG | - | chr5.3:29881106-29881125 | None:intergenic | 25.0% |
| AAAGTAGTTATCGATAGGTT+GGG | + | chr5.3:29879880-29879899 | MS.gene85870:intron | 30.0% | |
| AACAAGATACCATAAAAGAG+AGG | - | chr5.3:29877531-29877550 | None:intergenic | 30.0% | |
| AAGCTATCACAAAGATCTTA+TGG | - | chr5.3:29880774-29880793 | None:intergenic | 30.0% | |
| ACAGTAAATAAATGATGTCG+TGG | - | chr5.3:29878815-29878834 | None:intergenic | 30.0% | |
| ACTATATAGGAGAGGAAAAA+AGG | + | chr5.3:29877888-29877907 | MS.gene85870:intron | 30.0% | |
| AGAGTTCTTGACTAATTAAC+AGG | + | chr5.3:29876160-29876179 | MS.gene85870:intron | 30.0% | |
| AGTATCCAACAAATATTGGT+AGG | - | chr5.3:29880587-29880606 | None:intergenic | 30.0% | |
| ATGAGTAGGTTGTTCAATAT+TGG | - | chr5.3:29876292-29876311 | None:intergenic | 30.0% | |
| CTATATAGGAGAGGAAAAAA+GGG | + | chr5.3:29877889-29877908 | MS.gene85870:intron | 30.0% | |
| CTGAATCGTTCATACAAATA+TGG | + | chr5.3:29877319-29877338 | MS.gene85870:CDS | 30.0% | |
| GATTGAGGAATTCAAAAGAT+AGG | - | chr5.3:29876845-29876864 | None:intergenic | 30.0% | |
| GCTATCATGTGAACAAAATT+AGG | - | chr5.3:29878354-29878373 | None:intergenic | 30.0% | |
| GTTTCAGAGTTTGATAAAGA+AGG | + | chr5.3:29881000-29881019 | MS.gene85870:intron | 30.0% | |
| TATCTATTATGGCCCTATTT+AGG | + | chr5.3:29875870-29875889 | MS.gene85870:intron | 30.0% | |
| TCTAACCATGTAAGTTAACT+TGG | + | chr5.3:29877470-29877489 | MS.gene85870:intron | 30.0% | |
| TCTATAGCTGAATAGTGATT+TGG | + | chr5.3:29879906-29879925 | MS.gene85870:intron | 30.0% | |
| TGAAGATAGATGAAGGAATT+AGG | - | chr5.3:29875789-29875808 | None:intergenic | 30.0% | |
| TGACATTTGATTATGTACTC+GGG | + | chr5.3:29880185-29880204 | MS.gene85870:intron | 30.0% | |
| TGATAAAACTCAGTCAATGT+AGG | - | chr5.3:29881046-29881065 | None:intergenic | 30.0% | |
| TGCAGAACAAATTATCATAC+AGG | + | chr5.3:29875913-29875932 | MS.gene85870:intron | 30.0% | |
| TGGAACAAATATTCAACTCA+TGG | + | chr5.3:29877944-29877963 | MS.gene85870:intron | 30.0% | |
| TTATGAATGTATATGCACCA+AGG | + | chr5.3:29880382-29880401 | MS.gene85870:CDS | 30.0% | |
| TTATTCCATATAAGCTATCC+TGG | + | chr5.3:29875988-29876007 | MS.gene85870:intron | 30.0% | |
| TTGATCAAACTTAAGTGCTT+TGG | + | chr5.3:29876775-29876794 | MS.gene85870:intron | 30.0% | |
| TTTAGTGAAGAGGACTATAT+AGG | + | chr5.3:29877875-29877894 | MS.gene85870:intron | 30.0% | |
| TTTCAATGACATGTATAAGG+TGG | + | chr5.3:29876744-29876763 | MS.gene85870:intron | 30.0% | |
| TTTGCAAAGTAGTTATCGAT+AGG | + | chr5.3:29879875-29879894 | MS.gene85870:intron | 30.0% | |
| TTTGTGAGTCAGATAATTAC+CGG | + | chr5.3:29878449-29878468 | MS.gene85870:CDS | 30.0% | |
| ! | AATTAGGTCAATCATCGATT+AGG | + | chr5.3:29877594-29877613 | MS.gene85870:intron | 30.0% |
| ! | ACCATTGATTGACAAATCAA+AGG | + | chr5.3:29878045-29878064 | MS.gene85870:intron | 30.0% |
| ! | ACTCATTAAATAGAAGTGTG+AGG | - | chr5.3:29880548-29880567 | None:intergenic | 30.0% |
| ! | ATATTGGTAGGAATCGTTTT+CGG | - | chr5.3:29880575-29880594 | None:intergenic | 30.0% |
| ! | ATGAAACTGCAGGAAAATTT+TGG | + | chr5.3:29880406-29880425 | MS.gene85870:CDS | 30.0% |
| ! | ATGAGTTGAATATTTGTTCC+AGG | - | chr5.3:29877945-29877964 | None:intergenic | 30.0% |
| ! | CATCAAAATGCAACTTGTTT+AGG | - | chr5.3:29880128-29880147 | None:intergenic | 30.0% |
| ! | TCTTGATTTGAAATGTACCT+CGG | - | chr5.3:29880613-29880632 | None:intergenic | 30.0% |
| ! | TGAATTTTTCATGTCTCTGT+TGG | + | chr5.3:29877129-29877148 | MS.gene85870:intron | 30.0% |
| ! | TTAGTTGGTATCTGATCAAA+AGG | + | chr5.3:29880235-29880254 | MS.gene85870:intron | 30.0% |
| ! | TTCATAACTCCTCTCTTTTA+TGG | + | chr5.3:29877519-29877538 | MS.gene85870:intron | 30.0% |
| ! | TTTAGAGTTGCATGAGAATT+AGG | + | chr5.3:29877578-29877597 | MS.gene85870:intron | 30.0% |
| ! | TTTTGTTCACATGATAGCTT+TGG | + | chr5.3:29878356-29878375 | MS.gene85870:intron | 30.0% |
| ! | TTTTTGTCCTGTCTTCTATT+TGG | + | chr5.3:29877774-29877793 | MS.gene85870:intron | 30.0% |
| !! | AGTGTAAAAGCATTTCAGTT+AGG | + | chr5.3:29879933-29879952 | MS.gene85870:intron | 30.0% |
| !! | AGTTTTCAATTGACTCAAGT+TGG | - | chr5.3:29877427-29877446 | None:intergenic | 30.0% |
| !! | GACTGAGTTTTATCACAATT+TGG | + | chr5.3:29881051-29881070 | MS.gene85870:CDS | 30.0% |
| !! | GTTTGGATATTTTAGACTTG+TGG | + | chr5.3:29877911-29877930 | MS.gene85870:intron | 30.0% |
| !! | TTTCTTCACTCATTTTGGAA+AGG | - | chr5.3:29880067-29880086 | None:intergenic | 30.0% |
| !!! | AAGTTTTAAGACCTTTGTTG+TGG | + | chr5.3:29877980-29877999 | MS.gene85870:intron | 30.0% |
| !!! | ACTTTGTTTTTCAGAGAGAA+TGG | - | chr5.3:29880930-29880949 | None:intergenic | 30.0% |
| !!! | CAAGCCATGTATCTTTTTTT+TGG | + | chr5.3:29876132-29876151 | MS.gene85870:intron | 30.0% |
| !!! | GATTGTTTTGAAAGAGCTTA+TGG | - | chr5.3:29876066-29876085 | None:intergenic | 30.0% |
| !!! | TACAACACTTTTAGTTCTGA+GGG | + | chr5.3:29877802-29877821 | MS.gene85870:intron | 30.0% |
| AAACAACTGAAGAATCAGAC+TGG | - | chr5.3:29878483-29878502 | None:intergenic | 35.0% | |
| AACAACTGAAGAATCAGACT+GGG | - | chr5.3:29878482-29878501 | None:intergenic | 35.0% | |
| AACACTAGGATTTAGCGATT+AGG | - | chr5.3:29879665-29879684 | None:intergenic | 35.0% | |
| ACATGTGACAGATAAGAAGA+AGG | - | chr5.3:29876487-29876506 | None:intergenic | 35.0% | |
| ACTAAGCAGAAGATTAAGCA+AGG | + | chr5.3:29876919-29876938 | MS.gene85870:CDS | 35.0% | |
| AGAAATGAAGTGCATACTGT+AGG | + | chr5.3:29877827-29877846 | MS.gene85870:intron | 35.0% | |
| AGAGTTTGATAAAGAAGGAC+AGG | + | chr5.3:29881005-29881024 | MS.gene85870:intron | 35.0% | |
| AGGAAGTCCTAGTAAAGAAA+AGG | - | chr5.3:29879708-29879727 | None:intergenic | 35.0% | |
| AGGACGAATGGTAAAATTAG+TGG | - | chr5.3:29879411-29879430 | None:intergenic | 35.0% | |
| AGGTTATCAAAATCAGAGAC+AGG | - | chr5.3:29879551-29879570 | None:intergenic | 35.0% | |
| ATACCACAAGGATATTCCAA+GGG | + | chr5.3:29879341-29879360 | MS.gene85870:CDS | 35.0% | |
| ATCATTGAATTGTGCACAGT+AGG | - | chr5.3:29880432-29880451 | None:intergenic | 35.0% | |
| ATGAACGATTCAGAGAAGAA+AGG | - | chr5.3:29877312-29877331 | None:intergenic | 35.0% | |
| ATGATGTTTGGAAACTGTTG+AGG | + | chr5.3:29879787-29879806 | MS.gene85870:intron | 35.0% | |
| ATGGTAAAATTAGTGGAGCT+AGG | - | chr5.3:29879404-29879423 | None:intergenic | 35.0% | |
| ATTACTTATGTTGTCACGTC+AGG | + | chr5.3:29879210-29879229 | MS.gene85870:CDS | 35.0% | |
| CAAAGTAGTTATCGATAGGT+TGG | + | chr5.3:29879879-29879898 | MS.gene85870:intron | 35.0% | |
| CACTTTGCATTTCACTTTAG+AGG | - | chr5.3:29878015-29878034 | None:intergenic | 35.0% | |
| CATGCTACTAATACACAAGT+AGG | + | chr5.3:29877161-29877180 | MS.gene85870:intron | 35.0% | |
| CATGTGACAGATAAGAAGAA+GGG | - | chr5.3:29876486-29876505 | None:intergenic | 35.0% | |
| CATTTGCTCTATGCTTCATA+GGG | - | chr5.3:29878298-29878317 | None:intergenic | 35.0% | |
| CGATTCCTACCAATATTTGT+TGG | + | chr5.3:29880579-29880598 | MS.gene85870:CDS | 35.0% | |
| CGTAAAAAAATGAAGAGGAG+AGG | + | chr5.3:29880102-29880121 | MS.gene85870:intron | 35.0% | |
| GAGAAAAAGGTTTAGTGAAG+AGG | + | chr5.3:29877865-29877884 | MS.gene85870:intron | 35.0% | |
| GAGTTTGATAAAGAAGGACA+GGG | + | chr5.3:29881006-29881025 | MS.gene85870:intron | 35.0% | |
| GATACTTATATGGAGACAGA+GGG | + | chr5.3:29878981-29879000 | MS.gene85870:intron | 35.0% | |
| GATGTATGCAAGACAAAAGT+AGG | - | chr5.3:29879436-29879455 | None:intergenic | 35.0% | |
| GCAAATGAACATGTCAAACT+AGG | + | chr5.3:29878311-29878330 | MS.gene85870:intron | 35.0% | |
| GGAAGTTCAAATTCATCATC+TGG | - | chr5.3:29879312-29879331 | None:intergenic | 35.0% | |
| GGGAATGCTGTTAACTAAAA+TGG | - | chr5.3:29876410-29876429 | None:intergenic | 35.0% | |
| GTTTGCATCATTCTAGATTG+AGG | - | chr5.3:29876860-29876879 | None:intergenic | 35.0% | |
| TAATCCTTACCACAAGACTT+CGG | - | chr5.3:29876534-29876553 | None:intergenic | 35.0% | |
| TACATCACCAAATAGAAGAC+AGG | - | chr5.3:29877784-29877803 | None:intergenic | 35.0% | |
| TACCAAGAAGTCCAAAGAAA+AGG | - | chr5.3:29879368-29879387 | None:intergenic | 35.0% | |
| TACTAGGACTTCCTAAACTT+GGG | + | chr5.3:29879714-29879733 | MS.gene85870:intron | 35.0% | |
| TATTGAATTGGAACCAAAGC+AGG | - | chr5.3:29881094-29881113 | None:intergenic | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | - | chr5.3:29880660-29880679 | None:intergenic | 35.0% | |
| TCAAGCTCTTAAGAATGAAG+AGG | - | chr5.3:29876196-29876215 | None:intergenic | 35.0% | |
| TCATTTGCTCTATGCTTCAT+AGG | - | chr5.3:29878299-29878318 | None:intergenic | 35.0% | |
| TCTGTAAGCAGATTCACAAA+AGG | - | chr5.3:29878426-29878445 | None:intergenic | 35.0% | |
| TGAGATGTATCCTTGAATAG+TGG | - | chr5.3:29878540-29878559 | None:intergenic | 35.0% | |
| TGATACTTATATGGAGACAG+AGG | + | chr5.3:29878980-29878999 | MS.gene85870:intron | 35.0% | |
| TGCTTAATCTTCTGCTTAGT+GGG | - | chr5.3:29876919-29876938 | None:intergenic | 35.0% | |
| TGCTTATAAAGATCCTGCTT+TGG | + | chr5.3:29881078-29881097 | MS.gene85870:CDS | 35.0% | |
| TTACACTTTACTCACTTTGG+AGG | + | chr5.3:29878164-29878183 | MS.gene85870:intron | 35.0% | |
| TTACTAGGACTTCCTAAACT+TGG | + | chr5.3:29879713-29879732 | MS.gene85870:intron | 35.0% | |
| TTCTTCTTATCTGTCACATG+TGG | + | chr5.3:29876486-29876505 | MS.gene85870:CDS | 35.0% | |
| TTGCTTAATCTTCTGCTTAG+TGG | - | chr5.3:29876920-29876939 | None:intergenic | 35.0% | |
| TTGGAGAAAAAGTCGAGAAA+AGG | - | chr5.3:29876947-29876966 | None:intergenic | 35.0% | |
| ! | AAAAAGATACATGGCTTGTC+AGG | - | chr5.3:29876130-29876149 | None:intergenic | 35.0% |
| ! | ACTAATTTTACCATTCGTCC+TGG | + | chr5.3:29879410-29879429 | MS.gene85870:CDS | 35.0% |
| ! | CAAACTAGGTAGTCAAGTTT+TGG | + | chr5.3:29878325-29878344 | MS.gene85870:intron | 35.0% |
| ! | GCAGAGTATCCAACAAATAT+TGG | - | chr5.3:29880591-29880610 | None:intergenic | 35.0% |
| ! | TGTATCCTTGAATAGTGGAA+AGG | - | chr5.3:29878535-29878554 | None:intergenic | 35.0% |
| ! | TTAAATAGAAGTGTGAGGAG+CGG | - | chr5.3:29880543-29880562 | None:intergenic | 35.0% |
| !! | CAAGTTGCATTTTGATGTCT+TGG | + | chr5.3:29880131-29880150 | MS.gene85870:intron | 35.0% |
| !! | GCCTTTGATTTGTCAATCAA+TGG | - | chr5.3:29878049-29878068 | None:intergenic | 35.0% |
| !!! | GTACAACACTTTTAGTTCTG+AGG | + | chr5.3:29877801-29877820 | MS.gene85870:intron | 35.0% |
| AAAGCAGTTAGAGGAGATTG+AGG | + | chr5.3:29876993-29877012 | MS.gene85870:CDS | 40.0% | |
| AACTCAGTAATCCACTGTGT+GGG | - | chr5.3:29877261-29877280 | None:intergenic | 40.0% | |
| AAGCTATCCTGGAAAGCTTA+TGG | + | chr5.3:29875999-29876018 | MS.gene85870:intron | 40.0% | |
| AATCAGACTGGGAAGATATC+CGG | - | chr5.3:29878471-29878490 | None:intergenic | 40.0% | |
| AATGAAGTGCATACTGTAGG+AGG | + | chr5.3:29877830-29877849 | MS.gene85870:intron | 40.0% | |
| AATTGCTAACTTCCCAGGAA+TGG | - | chr5.3:29878687-29878706 | None:intergenic | 40.0% | |
| ACTAAAATGGCGAACTGATG+AGG | - | chr5.3:29876397-29876416 | None:intergenic | 40.0% | |
| AGACAGGTTACACACAACAT+TGG | - | chr5.3:29879535-29879554 | None:intergenic | 40.0% | |
| AGCGCTGTATATGTTGTAAC+TGG | + | chr5.3:29875701-29875720 | MS.gene85870:CDS | 40.0% | |
| ATCCAAACAGGCAAACATTC+AGG | - | chr5.3:29880648-29880667 | None:intergenic | 40.0% | |
| ATCTGAGTGAAGAGACATGT+AGG | + | chr5.3:29879614-29879633 | MS.gene85870:intron | 40.0% | |
| ATTCTTCAGCTACATCTTGC+AGG | - | chr5.3:29879744-29879763 | None:intergenic | 40.0% | |
| CAGTCAATGTAGGATCATTC+TGG | - | chr5.3:29881036-29881055 | None:intergenic | 40.0% | |
| CATACCACAAGGATATTCCA+AGG | + | chr5.3:29879340-29879359 | MS.gene85870:CDS | 40.0% | |
| CTTGGAATATCCTTGTGGTA+TGG | - | chr5.3:29879342-29879361 | None:intergenic | 40.0% | |
| GAATGTTTGCCTGTTTGGAT+TGG | + | chr5.3:29880648-29880667 | MS.gene85870:intron | 40.0% | |
| GAGCTGCATTTGTATTCTTC+AGG | + | chr5.3:29877187-29877206 | MS.gene85870:CDS | 40.0% | |
| GAGTTCCTTTCCACTATTCA+AGG | + | chr5.3:29878527-29878546 | MS.gene85870:CDS | 40.0% | |
| GATTGACTGATTGCTGCAAA+TGG | - | chr5.3:29877239-29877258 | None:intergenic | 40.0% | |
| GCGTTATGAAAAGCAGTTAG+AGG | + | chr5.3:29876984-29877003 | MS.gene85870:CDS | 40.0% | |
| GCTTTCCAGGATAGCTTATA+TGG | - | chr5.3:29875996-29876015 | None:intergenic | 40.0% | |
| GTAGTAGCAGTGAAGTAGTT+AGG | - | chr5.3:29878873-29878892 | None:intergenic | 40.0% | |
| GTTAGAATGCTCGTCAAGAA+GGG | - | chr5.3:29877456-29877475 | None:intergenic | 40.0% | |
| TACCTGTAGTCTTCGTACAA+GGG | + | chr5.3:29877397-29877416 | MS.gene85870:CDS | 40.0% | |
| TAGGAGAGGAAAAAAGGGTT+TGG | + | chr5.3:29877894-29877913 | MS.gene85870:intron | 40.0% | |
| TCCATATATGCCATACCACA+AGG | + | chr5.3:29879329-29879348 | MS.gene85870:CDS | 40.0% | |
| TCCTTGTGGTATGGCATATA+TGG | - | chr5.3:29879333-29879352 | None:intergenic | 40.0% | |
| TGAAGAGGACTATATAGGAG+AGG | + | chr5.3:29877880-29877899 | MS.gene85870:intron | 40.0% | |
| TGATGCAACTGATGCACATT+GGG | + | chr5.3:29877710-29877729 | MS.gene85870:intron | 40.0% | |
| TGTAAGATTGAAGCAGTCAG+AGG | + | chr5.3:29877020-29877039 | MS.gene85870:CDS | 40.0% | |
| TTGATGCAACTGATGCACAT+TGG | + | chr5.3:29877709-29877728 | MS.gene85870:intron | 40.0% | |
| TTTCCTGCAGTTTCATACCT+TGG | - | chr5.3:29880402-29880421 | None:intergenic | 40.0% | |
| ! | AAGTGTTGTGGTTCACGATA+TGG | + | chr5.3:29878591-29878610 | MS.gene85870:CDS | 40.0% |
| ! | AATAGTGGAAAGGAACTCCA+TGG | - | chr5.3:29878525-29878544 | None:intergenic | 40.0% |
| ! | AGACTTGTGGATGTTTTTCC+TGG | + | chr5.3:29877924-29877943 | MS.gene85870:intron | 40.0% |
| ! | ATTCCAAGGGTCCTTTTCTT+TGG | + | chr5.3:29879354-29879373 | MS.gene85870:CDS | 40.0% |
| ! | CATTTCACTTTAGAGGAGTC+AGG | - | chr5.3:29878008-29878027 | None:intergenic | 40.0% |
| ! | GCATGCGTTCTATTGATTGT+AGG | + | chr5.3:29880008-29880027 | MS.gene85870:intron | 40.0% |
| ! | GTCCTTTTCTTTGGACTTCT+TGG | + | chr5.3:29879363-29879382 | MS.gene85870:CDS | 40.0% |
| ! | TTGAGTCTATCGACTAGCAT+AGG | + | chr5.3:29880676-29880695 | MS.gene85870:intron | 40.0% |
| ! | TTTTTCGCGACTGCATTTTC+TGG | + | chr5.3:29878620-29878639 | MS.gene85870:CDS | 40.0% |
| !! | GTGCAACTACTAAAGTGTTG+TGG | + | chr5.3:29878579-29878598 | MS.gene85870:CDS | 40.0% |
| !! | TCTTCAGTTGTTTCTGCAAC+TGG | + | chr5.3:29878490-29878509 | MS.gene85870:CDS | 40.0% |
| AAAGGCCAGTAAACATCACG+AGG | - | chr5.3:29877294-29877313 | None:intergenic | 45.0% | |
| AAGCAAACTCCGAAGTCTTG+TGG | + | chr5.3:29876522-29876541 | MS.gene85870:CDS | 45.0% | |
| AAGTGCATACTGTAGGAGGA+AGG | + | chr5.3:29877834-29877853 | MS.gene85870:intron | 45.0% | |
| AATCAGTCAATCCCACACAG+TGG | + | chr5.3:29877247-29877266 | MS.gene85870:CDS | 45.0% | |
| AATGGACGTAGGAACAAGGA+TGG | - | chr5.3:29878669-29878688 | None:intergenic | 45.0% | |
| ACCACAATTGCTAACTTCCC+AGG | - | chr5.3:29878692-29878711 | None:intergenic | 45.0% | |
| ACTCATGCACATCATTGCAG+TGG | + | chr5.3:29880464-29880483 | MS.gene85870:CDS | 45.0% | |
| ACTGATGCTGCTAGAAGAAG+TGG | - | chr5.3:29876431-29876450 | None:intergenic | 45.0% | |
| AGCTGAAGATATAAGGGGAC+TGG | - | chr5.3:29881140-29881159 | None:intergenic | 45.0% | |
| AGTCCAAAGAAAAGGACCCT+TGG | - | chr5.3:29879360-29879379 | None:intergenic | 45.0% | |
| ATACTGTAGGAGGAAGGTTG+AGG | + | chr5.3:29877840-29877859 | MS.gene85870:intron | 45.0% | |
| ATCTTCTGCTTAGTGGGATC+TGG | - | chr5.3:29876913-29876932 | None:intergenic | 45.0% | |
| ATGCAAGACAAAAGTAGGCC+AGG | - | chr5.3:29879431-29879450 | None:intergenic | 45.0% | |
| CAACTCAGTAATCCACTGTG+TGG | - | chr5.3:29877262-29877281 | None:intergenic | 45.0% | |
| CAGAACCTCGTGATGTTTAC+TGG | + | chr5.3:29877286-29877305 | MS.gene85870:CDS | 45.0% | |
| CAGTAAACATCACGAGGTTC+TGG | - | chr5.3:29877288-29877307 | None:intergenic | 45.0% | |
| CTCATGCACATCATTGCAGT+GGG | + | chr5.3:29880465-29880484 | MS.gene85870:CDS | 45.0% | |
| CTGATGCTGCTAGAAGAAGT+GGG | - | chr5.3:29876430-29876449 | None:intergenic | 45.0% | |
| CTTATGTTGTCACGTCAGGA+TGG | + | chr5.3:29879214-29879233 | MS.gene85870:CDS | 45.0% | |
| GAAGGTTGAGGGAGAGAAAA+AGG | + | chr5.3:29877852-29877871 | MS.gene85870:intron | 45.0% | |
| GACCTGAATGTTTGCCTGTT+TGG | + | chr5.3:29880643-29880662 | MS.gene85870:intron | 45.0% | |
| GATGCAACTGATGCACATTG+GGG | + | chr5.3:29877711-29877730 | MS.gene85870:intron | 45.0% | |
| GCACGTGACATGAAAGATGT+TGG | - | chr5.3:29878192-29878211 | None:intergenic | 45.0% | |
| GCTGTATCCATAAGCTTTCC+AGG | - | chr5.3:29876009-29876028 | None:intergenic | 45.0% | |
| GGTTAGAATGCTCGTCAAGA+AGG | - | chr5.3:29877457-29877476 | None:intergenic | 45.0% | |
| GTACCTGTAGTCTTCGTACA+AGG | + | chr5.3:29877396-29877415 | MS.gene85870:CDS | 45.0% | |
| GTACGAAGACTACAGGTACA+AGG | - | chr5.3:29877395-29877414 | None:intergenic | 45.0% | |
| TACTGTAGGAGGAAGGTTGA+GGG | + | chr5.3:29877841-29877860 | MS.gene85870:intron | 45.0% | |
| TCCTGGGAAGTTAGCAATTG+TGG | + | chr5.3:29878688-29878707 | MS.gene85870:CDS | 45.0% | |
| TTGCAGGTCTTCCCAAGTTT+AGG | - | chr5.3:29879728-29879747 | None:intergenic | 45.0% | |
| TTGTTCCTACGTCCATTCCT+GGG | + | chr5.3:29878672-29878691 | MS.gene85870:CDS | 45.0% | |
| ! | AACTCCGAAGTCTTGTGGTA+AGG | + | chr5.3:29876527-29876546 | MS.gene85870:intron | 45.0% |
| ! | ATTTGTTGGATACTCTGCCG+AGG | + | chr5.3:29880593-29880612 | MS.gene85870:CDS | 45.0% |
| ! | TCATCGATTAGGCGACAAGT+TGG | + | chr5.3:29877605-29877624 | MS.gene85870:intron | 45.0% |
| ! | TCATTGGCAGGAGAAGTATG+TGG | + | chr5.3:29877045-29877064 | MS.gene85870:intron | 45.0% |
| !! | CACACAGTGGATTACTGAGT+TGG | + | chr5.3:29877260-29877279 | MS.gene85870:CDS | 45.0% |
| !!! | TTTATTTATTTTATGTTATT+TGG | + | chr5.3:29877493-29877512 | MS.gene85870:intron | 5.0% |
| AACTTCCCAGGAATGGACGT+AGG | - | chr5.3:29878680-29878699 | None:intergenic | 50.0% | |
| AGCAATTGTGGTTCCAGCAC+AGG | + | chr5.3:29878700-29878719 | MS.gene85870:CDS | 50.0% | |
| AGCCCTTGTACGAAGACTAC+AGG | - | chr5.3:29877402-29877421 | None:intergenic | 50.0% | |
| CAAAAGTAGGCCAGGACGAA+TGG | - | chr5.3:29879423-29879442 | None:intergenic | 50.0% | |
| CAGGAATGGACGTAGGAACA+AGG | - | chr5.3:29878673-29878692 | None:intergenic | 50.0% | |
| CTGCAAATGGAAAGCAGCTG+CGG | - | chr5.3:29877226-29877245 | None:intergenic | 50.0% | |
| CTTGTTCCTACGTCCATTCC+TGG | + | chr5.3:29878671-29878690 | MS.gene85870:CDS | 50.0% | |
| GAAAGGAACTCCATGGTAGG+AGG | - | chr5.3:29878518-29878537 | None:intergenic | 50.0% | |
| GAACATCGTCTAACCTGTGC+TGG | - | chr5.3:29878716-29878735 | None:intergenic | 50.0% | |
| GAACTGATGAGGCTGTGGTT+TGG | - | chr5.3:29876386-29876405 | None:intergenic | 50.0% | |
| GAAGCAGTCAGAGGCTTCAT+TGG | + | chr5.3:29877029-29877048 | MS.gene85870:CDS | 50.0% | |
| GCACCAAGGTATGAAACTGC+AGG | + | chr5.3:29880396-29880415 | MS.gene85870:CDS | 50.0% | |
| GGACCCTTGGAATATCCTTG+TGG | - | chr5.3:29879347-29879366 | None:intergenic | 50.0% | |
| GGAGTCAGGTTCCACAACAA+AGG | - | chr5.3:29877994-29878013 | None:intergenic | 50.0% | |
| GTGCATGCACTCTTAGCCTA+TGG | + | chr5.3:29875753-29875772 | MS.gene85870:intron | 50.0% | |
| GTGGAAAGGAACTCCATGGT+AGG | - | chr5.3:29878521-29878540 | None:intergenic | 50.0% | |
| !! | GGCGACAAGTTGGTGATTGT+AGG | + | chr5.3:29877615-29877634 | MS.gene85870:intron | 50.0% |
| ATGGCGAACTGATGAGGCTG+TGG | - | chr5.3:29876391-29876410 | None:intergenic | 55.0% | |
| CAGTCAGAGGCTTCATTGGC+AGG | + | chr5.3:29877033-29877052 | MS.gene85870:CDS | 55.0% | |
| ! | AGAAGTGTGAGGAGCGGTAG+AGG | - | chr5.3:29880537-29880556 | None:intergenic | 55.0% |
| GCAACTGGTGCCTCCTACCA+TGG | + | chr5.3:29878505-29878524 | MS.gene85870:CDS | 60.0% | |
| !! | GAGCGGTAGAGGAAGCGTCA+AGG | - | chr5.3:29880526-29880545 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 29875685 | 29881162 | 29875685 | ID=MS.gene85870 |
| chr5.3 | mRNA | 29875685 | 29881162 | 29875685 | ID=MS.gene85870.t1;Parent=MS.gene85870 |
| chr5.3 | exon | 29875685 | 29875748 | 29875685 | ID=MS.gene85870.t1.exon1;Parent=MS.gene85870.t1 |
| chr5.3 | CDS | 29875685 | 29875748 | 29875685 | ID=cds.MS.gene85870.t1;Parent=MS.gene85870.t1 |
| chr5.3 | exon | 29876337 | 29876543 | 29876337 | ID=MS.gene85870.t1.exon2;Parent=MS.gene85870.t1 |
| chr5.3 | CDS | 29876337 | 29876543 | 29876337 | ID=cds.MS.gene85870.t1;Parent=MS.gene85870.t1 |
| chr5.3 | exon | 29876868 | 29877059 | 29876868 | ID=MS.gene85870.t1.exon3;Parent=MS.gene85870.t1 |
| chr5.3 | CDS | 29876868 | 29877059 | 29876868 | ID=cds.MS.gene85870.t1;Parent=MS.gene85870.t1 |
| chr5.3 | exon | 29877183 | 29877478 | 29877183 | ID=MS.gene85870.t1.exon4;Parent=MS.gene85870.t1 |
| chr5.3 | CDS | 29877183 | 29877478 | 29877183 | ID=cds.MS.gene85870.t1;Parent=MS.gene85870.t1 |
| chr5.3 | exon | 29878445 | 29878721 | 29878445 | ID=MS.gene85870.t1.exon5;Parent=MS.gene85870.t1 |
| chr5.3 | CDS | 29878445 | 29878721 | 29878445 | ID=cds.MS.gene85870.t1;Parent=MS.gene85870.t1 |
| chr5.3 | exon | 29879198 | 29879470 | 29879198 | ID=MS.gene85870.t1.exon6;Parent=MS.gene85870.t1 |
| chr5.3 | CDS | 29879198 | 29879470 | 29879198 | ID=cds.MS.gene85870.t1;Parent=MS.gene85870.t1 |
| chr5.3 | exon | 29880381 | 29880614 | 29880381 | ID=MS.gene85870.t1.exon7;Parent=MS.gene85870.t1 |
| chr5.3 | CDS | 29880381 | 29880614 | 29880381 | ID=cds.MS.gene85870.t1;Parent=MS.gene85870.t1 |
| chr5.3 | exon | 29881007 | 29881162 | 29881007 | ID=MS.gene85870.t1.exon8;Parent=MS.gene85870.t1 |
| chr5.3 | CDS | 29881007 | 29881162 | 29881007 | ID=cds.MS.gene85870.t1;Parent=MS.gene85870.t1 |
| Gene Sequence |
| Protein sequence |
