Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86080.t1 | XP_024641789.1 | 87.6 | 547 | 65 | 2 | 3 | 546 | 127 | 673 | 2.30E-287 | 997.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86080.t1 | A0A2K3NMQ5 | 70.5 | 559 | 149 | 6 | 2 | 545 | 302 | 859 | 2.8e-226 | 794.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050838 | MS.gene86080 | 0.821537 | 3.83E-53 | -1.69E-46 |
| MS.gene052133 | MS.gene86080 | 0.809694 | 1.67E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene86080 | 0.8031 | 4.10E-49 | -1.69E-46 |
| MS.gene061006 | MS.gene86080 | 0.808208 | 3.47E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86080.t1 | MTR_3g028350 | 35.971 | 139 | 50 | 4 | 278 | 409 | 32 | 138 | 8.33e-21 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86080.t1 | AT3G17450 | 34.953 | 535 | 332 | 7 | 19 | 550 | 305 | 826 | 5.51e-108 | 344 |
| MS.gene86080.t1 | AT3G17450 | 34.953 | 535 | 332 | 7 | 19 | 550 | 305 | 826 | 5.51e-108 | 344 |
| MS.gene86080.t1 | AT4G15020 | 36.214 | 486 | 303 | 6 | 19 | 503 | 197 | 676 | 2.18e-99 | 319 |
| MS.gene86080.t1 | AT4G15020 | 36.214 | 486 | 303 | 6 | 19 | 503 | 197 | 676 | 2.18e-99 | 319 |
| MS.gene86080.t1 | AT3G22220 | 34.091 | 484 | 310 | 6 | 19 | 501 | 193 | 668 | 1.09e-92 | 301 |
| MS.gene86080.t1 | AT3G22220 | 34.091 | 484 | 310 | 6 | 19 | 501 | 193 | 668 | 1.09e-92 | 301 |
| MS.gene86080.t1 | AT3G22220 | 34.091 | 484 | 310 | 6 | 19 | 501 | 193 | 668 | 1.09e-92 | 301 |
| MS.gene86080.t1 | AT3G22220 | 34.091 | 484 | 310 | 6 | 19 | 501 | 193 | 668 | 1.09e-92 | 301 |
| MS.gene86080.t1 | AT1G79740 | 31.600 | 500 | 325 | 7 | 7 | 502 | 99 | 585 | 2.55e-87 | 284 |
| MS.gene86080.t1 | AT1G79740 | 31.600 | 500 | 325 | 7 | 7 | 502 | 99 | 585 | 2.55e-87 | 284 |
| MS.gene86080.t1 | AT1G79740 | 31.613 | 465 | 301 | 7 | 42 | 502 | 1 | 452 | 1.48e-81 | 265 |
| MS.gene86080.t1 | AT1G79740 | 31.613 | 465 | 301 | 7 | 42 | 502 | 1 | 452 | 1.48e-81 | 265 |
| MS.gene86080.t1 | AT5G33406 | 43.945 | 289 | 156 | 3 | 222 | 507 | 1 | 286 | 5.72e-72 | 239 |
| MS.gene86080.t1 | AT3G13030 | 28.687 | 495 | 337 | 9 | 18 | 507 | 51 | 534 | 8.49e-62 | 213 |
| MS.gene86080.t1 | AT3G13030 | 28.687 | 495 | 337 | 9 | 18 | 507 | 51 | 534 | 8.49e-62 | 213 |
| MS.gene86080.t1 | AT3G13030 | 28.687 | 495 | 337 | 9 | 18 | 507 | 51 | 534 | 8.49e-62 | 213 |
| MS.gene86080.t1 | AT3G13030 | 28.687 | 495 | 337 | 9 | 18 | 507 | 51 | 534 | 8.49e-62 | 213 |
| MS.gene86080.t1 | AT3G13020 | 29.159 | 511 | 325 | 14 | 10 | 506 | 118 | 605 | 6.14e-59 | 207 |
| MS.gene86080.t1 | AT3G13030 | 26.667 | 495 | 314 | 10 | 18 | 507 | 51 | 501 | 2.39e-51 | 184 |
| MS.gene86080.t1 | AT1G43260 | 35.043 | 234 | 149 | 3 | 20 | 252 | 39 | 270 | 4.10e-43 | 156 |
| MS.gene86080.t1 | AT3G13010 | 27.093 | 454 | 304 | 14 | 20 | 468 | 99 | 530 | 2.10e-42 | 160 |
| MS.gene86080.t1 | AT1G36095 | 33.939 | 165 | 108 | 1 | 127 | 291 | 135 | 298 | 5.24e-25 | 105 |
| MS.gene86080.t1 | AT5G31412 | 48.182 | 110 | 55 | 1 | 85 | 194 | 131 | 238 | 2.56e-23 | 103 |
Find 135 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCATGGCTAATTCAAAAT+TGG | 0.199881 | 6.3:-8573505 | MS.gene86080:CDS |
| CGATAAACGGGCGAACGATA+TGG | 0.235038 | 6.3:-8573827 | MS.gene86080:CDS |
| AGCTTGACATGCAGTTCTTA+TGG | 0.235748 | 6.3:-8573697 | MS.gene86080:CDS |
| AGAGATGATATTGAAGTTAC+AGG | 0.254797 | 6.3:-8573928 | MS.gene86080:CDS |
| TTCTCTATTGCATAAGTTTA+CGG | 0.270400 | 6.3:-8574530 | MS.gene86080:CDS |
| TCAATCTTCGCTCTTTCTTC+AGG | 0.287962 | 6.3:+8573868 | None:intergenic |
| GCTGATTTGTATGATGAATA+TGG | 0.302051 | 6.3:-8573381 | MS.gene86080:CDS |
| ATTTGTTGAGGATGTGGTTT+TGG | 0.304180 | 6.3:-8574356 | MS.gene86080:CDS |
| GTAATTGTCTCTTCATAAAC+AGG | 0.341081 | 6.3:+8574601 | None:intergenic |
| GTTTGTTCAAATGATTGATA+TGG | 0.342724 | 6.3:-8575076 | MS.gene86080:CDS |
| TCAGTTTGGTGGAGCGCCTT+TGG | 0.342885 | 6.3:-8573763 | MS.gene86080:CDS |
| GCTTGACATGCAGTTCTTAT+GGG | 0.362470 | 6.3:-8573696 | MS.gene86080:CDS |
| AGCTAGTGGTGATAATATTC+AGG | 0.365489 | 6.3:-8575172 | MS.gene86080:CDS |
| GAGGAGTATATTGAATTTGT+TGG | 0.381145 | 6.3:-8574884 | MS.gene86080:CDS |
| TGGGGAAGAAAATGTTGTTC+AGG | 0.385390 | 6.3:-8574755 | MS.gene86080:CDS |
| AGAATTGAATGGAAGAAAAC+GGG | 0.395642 | 6.3:-8574946 | MS.gene86080:CDS |
| GTTTACGGAAGGAATAGATT+TGG | 0.398484 | 6.3:-8574515 | MS.gene86080:CDS |
| CTCATTACCAGCTGTCATTA+CGG | 0.401936 | 6.3:+8573792 | None:intergenic |
| AACTTGATGATTTCGATAAA+CGG | 0.402900 | 6.3:-8573840 | MS.gene86080:CDS |
| TAAGTTGGTGAATGAAGCTT+TGG | 0.409901 | 6.3:-8574980 | MS.gene86080:CDS |
| TCTGATTGATGTGCTTCGTT+TGG | 0.411513 | 6.3:-8574284 | MS.gene86080:CDS |
| GATAAACGGGCGAACGATAT+GGG | 0.415402 | 6.3:-8573826 | MS.gene86080:CDS |
| TTTGAGGGAAGAAGTTAAGT+TGG | 0.424912 | 6.3:-8574995 | MS.gene86080:CDS |
| TGAGAAATTGTTTAAGATGA+TGG | 0.433988 | 6.3:-8574797 | MS.gene86080:CDS |
| TAGAATTGAATGGAAGAAAA+CGG | 0.434921 | 6.3:-8574947 | MS.gene86080:CDS |
| ACTTGATGATTTCGATAAAC+GGG | 0.440903 | 6.3:-8573839 | MS.gene86080:CDS |
| TGTTGATGGAGAAGAGGACT+AGG | 0.442445 | 6.3:-8574690 | MS.gene86080:CDS |
| TCAGGTTGTGACGGATAATA+CGG | 0.446586 | 6.3:-8574737 | MS.gene86080:CDS |
| ATGATGTTGTTGATGAGGTT+GGG | 0.449231 | 6.3:-8574774 | MS.gene86080:CDS |
| GGGTGTTGTGTAATGGTTGA+TGG | 0.458705 | 6.3:-8574925 | MS.gene86080:CDS |
| ATACGAAGGGGTCTTTCAAA+AGG | 0.460455 | 6.3:-8574196 | MS.gene86080:CDS |
| AGAAGAGGACTAGGTTGTAT+TGG | 0.463979 | 6.3:-8574681 | MS.gene86080:CDS |
| CTTCGCTCTTTCTTCAGGAT+CGG | 0.467080 | 6.3:+8573873 | None:intergenic |
| AGATTAAAGGGAAGTATTTG+AGG | 0.468710 | 6.3:-8575011 | MS.gene86080:CDS |
| TGGTGGAGCGCCTTTGGAAA+GGG | 0.469403 | 6.3:-8573757 | MS.gene86080:CDS |
| TCATAAATGAAACCGGTGGC+TGG | 0.469414 | 6.3:+8574244 | None:intergenic |
| TGGGAAATTTGTTGAGGATG+TGG | 0.469712 | 6.3:-8574362 | MS.gene86080:CDS |
| GATTAAAGGGAAGTATTTGA+GGG | 0.470220 | 6.3:-8575010 | MS.gene86080:CDS |
| CATGGCCCTTTGCATGCAGC+AGG | 0.470926 | 6.3:-8573991 | MS.gene86080:CDS |
| AAGGATAATGGAAACATTGA+AGG | 0.479500 | 6.3:-8573438 | MS.gene86080:CDS |
| CCAGCTGTCATTACGGCTAC+AGG | 0.481278 | 6.3:+8573799 | None:intergenic |
| TGGTTTCGAAATGTGGGGTA+GGG | 0.484284 | 6.3:-8575056 | MS.gene86080:CDS |
| GATGATGTTGTTGATGAGGT+TGG | 0.487029 | 6.3:-8574775 | MS.gene86080:CDS |
| AATGGAAGATGAAGATCAAA+TGG | 0.487962 | 6.3:-8573286 | MS.gene86080:CDS |
| GTAATGAGGTTCCATCAGTT+TGG | 0.488851 | 6.3:-8573777 | MS.gene86080:CDS |
| CATTGCTTCATAAATGAAAC+CGG | 0.492513 | 6.3:+8574237 | None:intergenic |
| TTGATATGGTTTCGAAATGT+GGG | 0.495911 | 6.3:-8575062 | MS.gene86080:CDS |
| AATAGCCTGCTGCATGCAAA+GGG | 0.496097 | 6.3:+8573986 | None:intergenic |
| TGGCTGAAGAGAAAGCTAGA+TGG | 0.498126 | 6.3:-8573485 | MS.gene86080:CDS |
| TACGAAGGGGTCTTTCAAAA+GGG | 0.498546 | 6.3:-8574195 | MS.gene86080:CDS |
| ACGGCTTATTTCAGAGCTGC+TGG | 0.499550 | 6.3:-8574718 | MS.gene86080:CDS |
| TTACTCTTCACCGCCTTCAT+CGG | 0.506180 | 6.3:+8575102 | None:intergenic |
| AAACGTTTCTTCTCTTAGCA+TGG | 0.508244 | 6.3:+8573559 | None:intergenic |
| AGCTGCTGGTGAGATGTTGA+TGG | 0.509216 | 6.3:-8574704 | MS.gene86080:CDS |
| ATGGTTTCGAAATGTGGGGT+AGG | 0.509539 | 6.3:-8575057 | MS.gene86080:CDS |
| TGATGTTGTTGATGAGGTTG+GGG | 0.510097 | 6.3:-8574773 | MS.gene86080:CDS |
| CAACAATGCAATACCGATGA+AGG | 0.512113 | 6.3:-8575115 | MS.gene86080:CDS |
| TTGGTGGAGCGCCTTTGGAA+AGG | 0.515972 | 6.3:-8573758 | MS.gene86080:CDS |
| CTGCTGCATGCAAAGGGCCA+TGG | 0.517093 | 6.3:+8573992 | None:intergenic |
| TAATGATGTTGTCTTTGTCA+TGG | 0.523540 | 6.3:-8573520 | MS.gene86080:CDS |
| GACCGTCTTAATGAGACAAA+GGG | 0.523625 | 6.3:-8574448 | MS.gene86080:CDS |
| GATGAAGGCGGTGAAGAGTA+AGG | 0.524786 | 6.3:-8575100 | MS.gene86080:CDS |
| ATTGATATGGTTTCGAAATG+TGG | 0.524861 | 6.3:-8575063 | MS.gene86080:CDS |
| AAATAGCCTGCTGCATGCAA+AGG | 0.525665 | 6.3:+8573985 | None:intergenic |
| TGGGCTAGAATTCCACGCCT+TGG | 0.526582 | 6.3:+8574402 | None:intergenic |
| GATGAAGATGATGTTGAAGA+TGG | 0.528876 | 6.3:-8573327 | MS.gene86080:CDS |
| AAGATCATCATAGAATTGAA+TGG | 0.529865 | 6.3:-8574957 | MS.gene86080:CDS |
| TCAATTGATGATCCAGCCAC+CGG | 0.530744 | 6.3:-8574256 | MS.gene86080:CDS |
| CGGTTTCATTTATGAAGCAA+TGG | 0.530991 | 6.3:-8574236 | MS.gene86080:CDS |
| ATGAGGTTCCATCAGTTTGG+TGG | 0.532024 | 6.3:-8573774 | MS.gene86080:CDS |
| GATGGACTGATAAGAAGAAG+AGG | 0.535442 | 6.3:-8574903 | MS.gene86080:CDS |
| CCTCAGTTTCACTATAGCCA+TGG | 0.535493 | 6.3:-8573955 | MS.gene86080:CDS |
| CCACTGCATTGATTTGATGT+TGG | 0.536827 | 6.3:-8574644 | MS.gene86080:CDS |
| TATGAAGAGACAATTACAAA+GGG | 0.538625 | 6.3:-8574595 | MS.gene86080:CDS |
| CAATATCATCTCTAAATCCA+TGG | 0.539380 | 6.3:+8573938 | None:intergenic |
| AATGTTATGATTTGTTTGAA+CGG | 0.539457 | 6.3:-8574316 | MS.gene86080:CDS |
| GGTTGATGCGTCTGATATGT+TGG | 0.544314 | 6.3:-8574827 | MS.gene86080:CDS |
| TTGTTGGTGAATAGTGTGAA+TGG | 0.545457 | 6.3:-8574868 | MS.gene86080:CDS |
| AAGGCGCTCCACCAAACTGA+TGG | 0.545540 | 6.3:+8573766 | None:intergenic |
| CGTAATGACAGCTGGTAATG+AGG | 0.555047 | 6.3:-8573791 | MS.gene86080:CDS |
| GTTGTGTAATGGTTGATGGA+TGG | 0.555336 | 6.3:-8574921 | MS.gene86080:CDS |
| CCTGTAGCCGTAATGACAGC+TGG | 0.560622 | 6.3:-8573799 | MS.gene86080:CDS |
| CTATTGCATAAGTTTACGGA+AGG | 0.562613 | 6.3:-8574526 | MS.gene86080:CDS |
| TTGTATGATGAATATGGAGT+TGG | 0.563386 | 6.3:-8573375 | MS.gene86080:CDS |
| GAGAAGAATGTTCACATCCA+AGG | 0.565051 | 6.3:-8574419 | MS.gene86080:CDS |
| CCTTTAATCTCATCAAAAGA+CGG | 0.568974 | 6.3:+8575024 | None:intergenic |
| ACAAATCAGCAATCACATCA+TGG | 0.568982 | 6.3:+8573394 | None:intergenic |
| ACGAAGGGGTCTTTCAAAAG+GGG | 0.569633 | 6.3:-8574194 | MS.gene86080:CDS |
| CTCCCTTTGTCTCATTAAGA+CGG | 0.569817 | 6.3:+8574446 | None:intergenic |
| CTTGACATGCAGTTCTTATG+GGG | 0.570035 | 6.3:-8573695 | MS.gene86080:CDS |
| AGCTAAAGATGAAATACGAA+GGG | 0.573295 | 6.3:-8574209 | MS.gene86080:CDS |
| GTTGGAGATGATGTTGAAGA+TGG | 0.574369 | 6.3:-8573357 | MS.gene86080:CDS |
| CTCTGGTAGTCCCTTTCCAA+AGG | 0.575700 | 6.3:+8573747 | None:intergenic |
| AGCCCATTTGCGAAAACAAG+TGG | 0.576680 | 6.3:-8574385 | MS.gene86080:CDS |
| GGGAGATCATTGATGAACGA+TGG | 0.580216 | 6.3:-8574026 | MS.gene86080:CDS |
| GGAGATCATTGATGAACGAT+GGG | 0.580636 | 6.3:-8574025 | MS.gene86080:CDS |
| TCATGGAGAGACTTAAGAGA+TGG | 0.581686 | 6.3:+8573411 | None:intergenic |
| AAATGTTGTTCAGGTTGTGA+CGG | 0.581742 | 6.3:-8574746 | MS.gene86080:CDS |
| GAAAACGGGGTGTTGTGTAA+TGG | 0.584913 | 6.3:-8574932 | MS.gene86080:CDS |
| CCATTTGCGAAAACAAGTGG+TGG | 0.584953 | 6.3:-8574382 | MS.gene86080:CDS |
| AGACCGTCTTAATGAGACAA+AGG | 0.587540 | 6.3:-8574449 | MS.gene86080:CDS |
| GATGGATGATGTTGTTGATG+AGG | 0.588308 | 6.3:-8574779 | MS.gene86080:CDS |
| TCATCAATGATCTCCCATAG+AGG | 0.588707 | 6.3:+8574033 | None:intergenic |
| CGATGGGACGAACGACTCCA+TGG | 0.593151 | 6.3:-8574009 | MS.gene86080:CDS |
| AGACGAAGATGAAGATGCAA+TGG | 0.594713 | 6.3:-8573304 | MS.gene86080:CDS |
| CCATGGCTATAGTGAAACTG+AGG | 0.601867 | 6.3:+8573955 | None:intergenic |
| TAATCAGAGTGCATTTGAGA+TGG | 0.603112 | 6.3:-8573665 | MS.gene86080:intron |
| ACATGATTGTATAACAAGGA+TGG | 0.607785 | 6.3:-8573899 | MS.gene86080:CDS |
| GAATGTTCACATCCAAGGCG+TGG | 0.614569 | 6.3:-8574414 | MS.gene86080:CDS |
| CAACATCAAATCAATGCAGT+GGG | 0.614869 | 6.3:+8574645 | None:intergenic |
| CCAACATCAAATCAATGCAG+TGG | 0.618384 | 6.3:+8574644 | None:intergenic |
| AAGCGTGTAGAGCGATTGCA+AGG | 0.618639 | 6.3:-8575146 | MS.gene86080:CDS |
| TCAATGCAGTGGGTCGCACA+AGG | 0.625185 | 6.3:+8574655 | None:intergenic |
| TTATGAAGAGACAATTACAA+AGG | 0.625610 | 6.3:-8574596 | MS.gene86080:CDS |
| CATTTGCGAAAACAAGTGGT+GGG | 0.628981 | 6.3:-8574381 | MS.gene86080:CDS |
| GTGAGATGTTGATGGAGAAG+AGG | 0.630114 | 6.3:-8574696 | MS.gene86080:CDS |
| GTCTAAAGTTAAGTAAGATG+TGG | 0.631051 | 6.3:+8574468 | None:intergenic |
| GTCTACATGATTGTATAACA+AGG | 0.632511 | 6.3:-8573903 | MS.gene86080:CDS |
| GGAATAGATTTGGTGAGACA+AGG | 0.637270 | 6.3:-8574505 | MS.gene86080:CDS |
| AAGCTAAAGATGAAATACGA+AGG | 0.646158 | 6.3:-8574210 | MS.gene86080:CDS |
| TTGACATGCAGTTCTTATGG+GGG | 0.646721 | 6.3:-8573694 | MS.gene86080:CDS |
| AAGTGGTGGGAAATTTGTTG+AGG | 0.650091 | 6.3:-8574368 | MS.gene86080:CDS |
| CATGGCTATAGTGAAACTGA+GGG | 0.653025 | 6.3:+8573956 | None:intergenic |
| AGAGATGGGTCATTAGCTAG+TGG | 0.655578 | 6.3:-8575186 | MS.gene86080:CDS |
| GATGATATTGAAGTTACAGG+TGG | 0.663555 | 6.3:-8573925 | MS.gene86080:CDS |
| CGAAGGGGTCTTTCAAAAGG+GGG | 0.670528 | 6.3:-8574193 | MS.gene86080:CDS |
| TGATTGTATAACAAGGATGG+TGG | 0.672983 | 6.3:-8573896 | MS.gene86080:CDS |
| TGCTTCATAAATGAAACCGG+TGG | 0.674140 | 6.3:+8574240 | None:intergenic |
| AAACGAAGCACATCAATCAG+AGG | 0.676276 | 6.3:+8574286 | None:intergenic |
| TAGTGGTGATAATATTCAGG+AGG | 0.677478 | 6.3:-8575169 | MS.gene86080:CDS |
| CAATGCAATACCGATGAAGG+CGG | 0.693150 | 6.3:-8575112 | MS.gene86080:CDS |
| TGATATGGTTTCGAAATGTG+GGG | 0.712104 | 6.3:-8575061 | MS.gene86080:CDS |
| TTAATCTCATCAAAAGACGG+CGG | 0.722206 | 6.3:+8575027 | None:intergenic |
| GCTAAAGATGAAATACGAAG+GGG | 0.728879 | 6.3:-8574208 | MS.gene86080:CDS |
| GAATTGAATGGAAGAAAACG+GGG | 0.729125 | 6.3:-8574945 | MS.gene86080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTATTTGTATTTGTTT+AGG | - | chr6.3:8574878-8574897 | MS.gene86080:CDS | 15.0% |
| !!! | ATTTTTTTGTTTCAATATCT+TGG | - | chr6.3:8574348-8574367 | MS.gene86080:CDS | 15.0% |
| !! | ATTAAAAATCTGAAGGATAA+TGG | - | chr6.3:8575011-8575030 | MS.gene86080:CDS | 20.0% |
| !!! | AATGTTATGATTTGTTTGAA+CGG | - | chr6.3:8574145-8574164 | MS.gene86080:intron | 20.0% |
| !!! | TACAACTTTTATTTATTCGA+GGG | - | chr6.3:8573898-8573917 | MS.gene86080:CDS | 20.0% |
| !!! | TTACAACTTTTATTTATTCG+AGG | - | chr6.3:8573897-8573916 | MS.gene86080:CDS | 20.0% |
| ! | AAGATCATCATAGAATTGAA+TGG | - | chr6.3:8573504-8573523 | MS.gene86080:CDS | 25.0% |
| ! | GTTTGTTCAAATGATTGATA+TGG | - | chr6.3:8573385-8573404 | MS.gene86080:CDS | 25.0% |
| ! | TAGAATTGAATGGAAGAAAA+CGG | - | chr6.3:8573514-8573533 | MS.gene86080:CDS | 25.0% |
| ! | TATGAAGAGACAATTACAAA+GGG | - | chr6.3:8573866-8573885 | MS.gene86080:CDS | 25.0% |
| ! | TGAGCTAATTAAAAATCTGA+AGG | - | chr6.3:8575004-8575023 | MS.gene86080:CDS | 25.0% |
| ! | TTATGAAGAGACAATTACAA+AGG | - | chr6.3:8573865-8573884 | MS.gene86080:CDS | 25.0% |
| ! | TTCTCTATTGCATAAGTTTA+CGG | - | chr6.3:8573931-8573950 | MS.gene86080:CDS | 25.0% |
| !! | AACTTGATGATTTCGATAAA+CGG | - | chr6.3:8574621-8574640 | MS.gene86080:CDS | 25.0% |
| !! | TGAGAAATTGTTTAAGATGA+TGG | - | chr6.3:8573664-8573683 | MS.gene86080:intron | 25.0% |
| !!! | TTTTAGTTTTATGCCTCTAT+GGG | - | chr6.3:8574415-8574434 | MS.gene86080:CDS | 25.0% |
| !!! | TTTTTAGTTTTATGCCTCTA+TGG | - | chr6.3:8574414-8574433 | MS.gene86080:CDS | 25.0% |
| AAGCTAAAGATGAAATACGA+AGG | - | chr6.3:8574251-8574270 | MS.gene86080:CDS | 30.0% | |
| AATGGAAGATGAAGATCAAA+TGG | - | chr6.3:8575175-8575194 | MS.gene86080:CDS | 30.0% | |
| ACATGATTGTATAACAAGGA+TGG | - | chr6.3:8574562-8574581 | MS.gene86080:CDS | 30.0% | |
| AGAATTGAATGGAAGAAAAC+GGG | - | chr6.3:8573515-8573534 | MS.gene86080:CDS | 30.0% | |
| AGAGATGATATTGAAGTTAC+AGG | - | chr6.3:8574533-8574552 | MS.gene86080:CDS | 30.0% | |
| AGCTAAAGATGAAATACGAA+GGG | - | chr6.3:8574252-8574271 | MS.gene86080:CDS | 30.0% | |
| ATTGATATGGTTTCGAAATG+TGG | - | chr6.3:8573398-8573417 | MS.gene86080:CDS | 30.0% | |
| CAATATCATCTCTAAATCCA+TGG | + | chr6.3:8574526-8574545 | None:intergenic | 30.0% | |
| CATTGCTTCATAAATGAAAC+CGG | + | chr6.3:8574227-8574246 | None:intergenic | 30.0% | |
| CCTTTAATCTCATCAAAAGA+CGG | + | chr6.3:8573440-8573459 | None:intergenic | 30.0% | |
| GTAATTGTCTCTTCATAAAC+AGG | + | chr6.3:8573863-8573882 | None:intergenic | 30.0% | |
| GTCTACATGATTGTATAACA+AGG | - | chr6.3:8574558-8574577 | MS.gene86080:CDS | 30.0% | |
| TAATGATGTTGTCTTTGTCA+TGG | - | chr6.3:8574941-8574960 | MS.gene86080:CDS | 30.0% | |
| TGTCATGGCTAATTCAAAAT+TGG | - | chr6.3:8574956-8574975 | MS.gene86080:CDS | 30.0% | |
| TTGATATGGTTTCGAAATGT+GGG | - | chr6.3:8573399-8573418 | MS.gene86080:CDS | 30.0% | |
| TTGTATGATGAATATGGAGT+TGG | - | chr6.3:8575086-8575105 | MS.gene86080:CDS | 30.0% | |
| ! | ACTTGATGATTTCGATAAAC+GGG | - | chr6.3:8574622-8574641 | MS.gene86080:CDS | 30.0% |
| ! | CGTCTTTTGATGAGATTAAA+GGG | - | chr6.3:8573438-8573457 | MS.gene86080:CDS | 30.0% |
| ! | GAGGAGTATATTGAATTTGT+TGG | - | chr6.3:8573577-8573596 | MS.gene86080:intron | 30.0% |
| ! | GTCTAAAGTTAAGTAAGATG+TGG | + | chr6.3:8573996-8574015 | None:intergenic | 30.0% |
| !! | AAGGATAATGGAAACATTGA+AGG | - | chr6.3:8575023-8575042 | MS.gene86080:CDS | 30.0% |
| !! | AGATTAAAGGGAAGTATTTG+AGG | - | chr6.3:8573450-8573469 | MS.gene86080:CDS | 30.0% |
| !! | GAAAGGTATATATTTTCAGC+AGG | - | chr6.3:8574295-8574314 | MS.gene86080:CDS | 30.0% |
| !! | GATTAAAGGGAAGTATTTGA+GGG | - | chr6.3:8573451-8573470 | MS.gene86080:CDS | 30.0% |
| !! | GCTGATTTGTATGATGAATA+TGG | - | chr6.3:8575080-8575099 | MS.gene86080:CDS | 30.0% |
| AAACGTTTCTTCTCTTAGCA+TGG | + | chr6.3:8574905-8574924 | None:intergenic | 35.0% | |
| ACAAATCAGCAATCACATCA+TGG | + | chr6.3:8575070-8575089 | None:intergenic | 35.0% | |
| AGCTAGTGGTGATAATATTC+AGG | - | chr6.3:8573289-8573308 | MS.gene86080:CDS | 35.0% | |
| CAACATCAAATCAATGCAGT+GGG | + | chr6.3:8573819-8573838 | None:intergenic | 35.0% | |
| CGGTTTCATTTATGAAGCAA+TGG | - | chr6.3:8574225-8574244 | MS.gene86080:CDS | 35.0% | |
| CTATTGCATAAGTTTACGGA+AGG | - | chr6.3:8573935-8573954 | MS.gene86080:CDS | 35.0% | |
| GAATTGAATGGAAGAAAACG+GGG | - | chr6.3:8573516-8573535 | MS.gene86080:CDS | 35.0% | |
| GATGAAGATGATGTTGAAGA+TGG | - | chr6.3:8575134-8575153 | MS.gene86080:CDS | 35.0% | |
| GATGATATTGAAGTTACAGG+TGG | - | chr6.3:8574536-8574555 | MS.gene86080:CDS | 35.0% | |
| GCTAAAGATGAAATACGAAG+GGG | - | chr6.3:8574253-8574272 | MS.gene86080:CDS | 35.0% | |
| GTTTACGGAAGGAATAGATT+TGG | - | chr6.3:8573946-8573965 | MS.gene86080:CDS | 35.0% | |
| TAATCAGAGTGCATTTGAGA+TGG | - | chr6.3:8574796-8574815 | MS.gene86080:CDS | 35.0% | |
| TAGTGGTGATAATATTCAGG+AGG | - | chr6.3:8573292-8573311 | MS.gene86080:CDS | 35.0% | |
| TGATATGGTTTCGAAATGTG+GGG | - | chr6.3:8573400-8573419 | MS.gene86080:CDS | 35.0% | |
| TGATTGTATAACAAGGATGG+TGG | - | chr6.3:8574565-8574584 | MS.gene86080:CDS | 35.0% | |
| TTAATCTCATCAAAAGACGG+CGG | + | chr6.3:8573437-8573456 | None:intergenic | 35.0% | |
| TTTGAGGGAAGAAGTTAAGT+TGG | - | chr6.3:8573466-8573485 | MS.gene86080:CDS | 35.0% | |
| ! | ATACACGACACGCAAATTTT+TGG | + | chr6.3:8574742-8574761 | None:intergenic | 35.0% |
| ! | ATGATGTTGTTGATGAGGTT+GGG | - | chr6.3:8573687-8573706 | MS.gene86080:CDS | 35.0% |
| ! | CCGTCTTTTGATGAGATTAA+AGG | - | chr6.3:8573437-8573456 | MS.gene86080:CDS | 35.0% |
| ! | CTAAGAGAAGAAACGTTTTG+TGG | - | chr6.3:8574907-8574926 | MS.gene86080:CDS | 35.0% |
| ! | TGAATGGTACGTTCTTTTTG+AGG | - | chr6.3:8573609-8573628 | MS.gene86080:intron | 35.0% |
| ! | TTGTTGGTGAATAGTGTGAA+TGG | - | chr6.3:8573593-8573612 | MS.gene86080:intron | 35.0% |
| !! | AAATGTTGTTCAGGTTGTGA+CGG | - | chr6.3:8573715-8573734 | MS.gene86080:CDS | 35.0% |
| !! | ATTTGTTGAGGATGTGGTTT+TGG | - | chr6.3:8574105-8574124 | MS.gene86080:intron | 35.0% |
| !! | TAAGTTGGTGAATGAAGCTT+TGG | - | chr6.3:8573481-8573500 | MS.gene86080:CDS | 35.0% |
| AAACGAAGCACATCAATCAG+AGG | + | chr6.3:8574178-8574197 | None:intergenic | 40.0% | |
| AGAAGAGGACTAGGTTGTAT+TGG | - | chr6.3:8573780-8573799 | MS.gene86080:CDS | 40.0% | |
| AGACCGTCTTAATGAGACAA+AGG | - | chr6.3:8574012-8574031 | MS.gene86080:CDS | 40.0% | |
| AGACGAAGATGAAGATGCAA+TGG | - | chr6.3:8575157-8575176 | MS.gene86080:CDS | 40.0% | |
| AGCTTGACATGCAGTTCTTA+TGG | - | chr6.3:8574764-8574783 | MS.gene86080:CDS | 40.0% | |
| ATACGAAGGGGTCTTTCAAA+AGG | - | chr6.3:8574265-8574284 | MS.gene86080:CDS | 40.0% | |
| CAACAATGCAATACCGATGA+AGG | - | chr6.3:8573346-8573365 | MS.gene86080:CDS | 40.0% | |
| CATGGCTATAGTGAAACTGA+GGG | + | chr6.3:8574508-8574527 | None:intergenic | 40.0% | |
| CATTTGCGAAAACAAGTGGT+GGG | - | chr6.3:8574080-8574099 | MS.gene86080:intron | 40.0% | |
| CCAACATCAAATCAATGCAG+TGG | + | chr6.3:8573820-8573839 | None:intergenic | 40.0% | |
| CTCATTACCAGCTGTCATTA+CGG | + | chr6.3:8574672-8574691 | None:intergenic | 40.0% | |
| CTCCCTTTGTCTCATTAAGA+CGG | + | chr6.3:8574018-8574037 | None:intergenic | 40.0% | |
| CTTGACATGCAGTTCTTATG+GGG | - | chr6.3:8574766-8574785 | MS.gene86080:CDS | 40.0% | |
| GACCGTCTTAATGAGACAAA+GGG | - | chr6.3:8574013-8574032 | MS.gene86080:CDS | 40.0% | |
| GAGAAGAATGTTCACATCCA+AGG | - | chr6.3:8574042-8574061 | MS.gene86080:CDS | 40.0% | |
| GATGGATGATGTTGTTGATG+AGG | - | chr6.3:8573682-8573701 | MS.gene86080:CDS | 40.0% | |
| GCTTGACATGCAGTTCTTAT+GGG | - | chr6.3:8574765-8574784 | MS.gene86080:CDS | 40.0% | |
| GGAGATCATTGATGAACGAT+GGG | - | chr6.3:8574436-8574455 | MS.gene86080:CDS | 40.0% | |
| GTAATGAGGTTCCATCAGTT+TGG | - | chr6.3:8574684-8574703 | MS.gene86080:CDS | 40.0% | |
| GTTGGAGATGATGTTGAAGA+TGG | - | chr6.3:8575104-8575123 | MS.gene86080:CDS | 40.0% | |
| TACGAAGGGGTCTTTCAAAA+GGG | - | chr6.3:8574266-8574285 | MS.gene86080:CDS | 40.0% | |
| TCAATCTTCGCTCTTTCTTC+AGG | + | chr6.3:8574596-8574615 | None:intergenic | 40.0% | |
| TCATCAATGATCTCCCATAG+AGG | + | chr6.3:8574431-8574450 | None:intergenic | 40.0% | |
| TCATGGAGAGACTTAAGAGA+TGG | + | chr6.3:8575053-8575072 | None:intergenic | 40.0% | |
| TCTGATTGATGTGCTTCGTT+TGG | - | chr6.3:8574177-8574196 | MS.gene86080:intron | 40.0% | |
| TGCTTCATAAATGAAACCGG+TGG | + | chr6.3:8574224-8574243 | None:intergenic | 40.0% | |
| TGGGGAAGAAAATGTTGTTC+AGG | - | chr6.3:8573706-8573725 | MS.gene86080:CDS | 40.0% | |
| TTGACATGCAGTTCTTATGG+GGG | - | chr6.3:8574767-8574786 | MS.gene86080:CDS | 40.0% | |
| ! | GATGATGTTGTTGATGAGGT+TGG | - | chr6.3:8573686-8573705 | MS.gene86080:CDS | 40.0% |
| ! | TGATGTTGTTGATGAGGTTG+GGG | - | chr6.3:8573688-8573707 | MS.gene86080:CDS | 40.0% |
| ! | TTTCAAAAGGGGGCATAGAA+AGG | - | chr6.3:8574278-8574297 | MS.gene86080:CDS | 40.0% |
| !! | AAGTGGTGGGAAATTTGTTG+AGG | - | chr6.3:8574093-8574112 | MS.gene86080:intron | 40.0% |
| !! | CACCACTTGTTTTCGCAAAT+GGG | + | chr6.3:8574081-8574100 | None:intergenic | 40.0% |
| !! | CCACTGCATTGATTTGATGT+TGG | - | chr6.3:8573817-8573836 | MS.gene86080:CDS | 40.0% |
| !! | GATGGACTGATAAGAAGAAG+AGG | - | chr6.3:8573558-8573577 | MS.gene86080:CDS | 40.0% |
| !! | GGAATAGATTTGGTGAGACA+AGG | - | chr6.3:8573956-8573975 | MS.gene86080:CDS | 40.0% |
| !! | GTTGTGTAATGGTTGATGGA+TGG | - | chr6.3:8573540-8573559 | MS.gene86080:CDS | 40.0% |
| !! | TCAGGTTGTGACGGATAATA+CGG | - | chr6.3:8573724-8573743 | MS.gene86080:CDS | 40.0% |
| !! | TGGGAAATTTGTTGAGGATG+TGG | - | chr6.3:8574099-8574118 | MS.gene86080:intron | 40.0% |
| !!! | TGGTACGTTCTTTTTGAGGT+CGG | - | chr6.3:8573613-8573632 | MS.gene86080:intron | 40.0% |
| !!! | TGGTTTTGGACAAGGAGTTT+TGG | - | chr6.3:8574119-8574138 | MS.gene86080:intron | 40.0% |
| AAATAGCCTGCTGCATGCAA+AGG | + | chr6.3:8574479-8574498 | None:intergenic | 45.0% | |
| AATAGCCTGCTGCATGCAAA+GGG | + | chr6.3:8574478-8574497 | None:intergenic | 45.0% | |
| ACGAAGGGGTCTTTCAAAAG+GGG | - | chr6.3:8574267-8574286 | MS.gene86080:CDS | 45.0% | |
| AGAGATGGGTCATTAGCTAG+TGG | - | chr6.3:8573275-8573294 | MS.gene86080:CDS | 45.0% | |
| AGCCCATTTGCGAAAACAAG+TGG | - | chr6.3:8574076-8574095 | MS.gene86080:intron | 45.0% | |
| ATGAGGTTCCATCAGTTTGG+TGG | - | chr6.3:8574687-8574706 | MS.gene86080:CDS | 45.0% | |
| ATGGTTTCGAAATGTGGGGT+AGG | - | chr6.3:8573404-8573423 | MS.gene86080:CDS | 45.0% | |
| CAATGCAATACCGATGAAGG+CGG | - | chr6.3:8573349-8573368 | MS.gene86080:CDS | 45.0% | |
| CCATGGCTATAGTGAAACTG+AGG | + | chr6.3:8574509-8574528 | None:intergenic | 45.0% | |
| CCATTTGCGAAAACAAGTGG+TGG | - | chr6.3:8574079-8574098 | MS.gene86080:intron | 45.0% | |
| CCTCAGTTTCACTATAGCCA+TGG | - | chr6.3:8574506-8574525 | MS.gene86080:CDS | 45.0% | |
| CTTCGCTCTTTCTTCAGGAT+CGG | + | chr6.3:8574591-8574610 | None:intergenic | 45.0% | |
| GATAAACGGGCGAACGATAT+GGG | - | chr6.3:8574635-8574654 | MS.gene86080:CDS | 45.0% | |
| GGGAGATCATTGATGAACGA+TGG | - | chr6.3:8574435-8574454 | MS.gene86080:CDS | 45.0% | |
| TCATAAATGAAACCGGTGGC+TGG | + | chr6.3:8574220-8574239 | None:intergenic | 45.0% | |
| TGGCTGAAGAGAAAGCTAGA+TGG | - | chr6.3:8574976-8574995 | MS.gene86080:CDS | 45.0% | |
| TGGTTTCGAAATGTGGGGTA+GGG | - | chr6.3:8573405-8573424 | MS.gene86080:CDS | 45.0% | |
| TTACTCTTCACCGCCTTCAT+CGG | + | chr6.3:8573362-8573381 | None:intergenic | 45.0% | |
| ! | CGTAATGACAGCTGGTAATG+AGG | - | chr6.3:8574670-8574689 | MS.gene86080:CDS | 45.0% |
| ! | GGGTGTTGTGTAATGGTTGA+TGG | - | chr6.3:8573536-8573555 | MS.gene86080:CDS | 45.0% |
| ! | GGTTGATGCGTCTGATATGT+TGG | - | chr6.3:8573634-8573653 | MS.gene86080:intron | 45.0% |
| ! | GTGAGATGTTGATGGAGAAG+AGG | - | chr6.3:8573765-8573784 | MS.gene86080:CDS | 45.0% |
| ! | TCAATTGATGATCCAGCCAC+CGG | - | chr6.3:8574205-8574224 | MS.gene86080:CDS | 45.0% |
| ! | TGTTGATGGAGAAGAGGACT+AGG | - | chr6.3:8573771-8573790 | MS.gene86080:CDS | 45.0% |
| !! | CCACCACTTGTTTTCGCAAA+TGG | + | chr6.3:8574082-8574101 | None:intergenic | 45.0% |
| !! | GAAAACGGGGTGTTGTGTAA+TGG | - | chr6.3:8573529-8573548 | MS.gene86080:CDS | 45.0% |
| !!! | CACGCAAATTTTTGGAGCTC+TGG | + | chr6.3:8574734-8574753 | None:intergenic | 45.0% |
| !!! | TGAGGATGTGGTTTTGGACA+AGG | - | chr6.3:8574111-8574130 | MS.gene86080:intron | 45.0% |
| AAGCGTGTAGAGCGATTGCA+AGG | - | chr6.3:8573315-8573334 | MS.gene86080:CDS | 50.0% | |
| ACGGCTTATTTCAGAGCTGC+TGG | - | chr6.3:8573743-8573762 | MS.gene86080:CDS | 50.0% | |
| AGCTGCTGGTGAGATGTTGA+TGG | - | chr6.3:8573757-8573776 | MS.gene86080:CDS | 50.0% | |
| CGAAGGGGTCTTTCAAAAGG+GGG | - | chr6.3:8574268-8574287 | MS.gene86080:CDS | 50.0% | |
| CGATAAACGGGCGAACGATA+TGG | - | chr6.3:8574634-8574653 | MS.gene86080:CDS | 50.0% | |
| CTCTGGTAGTCCCTTTCCAA+AGG | + | chr6.3:8574717-8574736 | None:intergenic | 50.0% | |
| GAATGTTCACATCCAAGGCG+TGG | - | chr6.3:8574047-8574066 | MS.gene86080:intron | 50.0% | |
| GATGAAGGCGGTGAAGAGTA+AGG | - | chr6.3:8573361-8573380 | MS.gene86080:CDS | 50.0% | |
| CCAGCTGTCATTACGGCTAC+AGG | + | chr6.3:8574665-8574684 | None:intergenic | 55.0% | |
| CCTGTAGCCGTAATGACAGC+TGG | - | chr6.3:8574662-8574681 | MS.gene86080:CDS | 55.0% | |
| TCAATGCAGTGGGTCGCACA+AGG | + | chr6.3:8573809-8573828 | None:intergenic | 55.0% | |
| ! | AAGGCGCTCCACCAAACTGA+TGG | + | chr6.3:8574698-8574717 | None:intergenic | 55.0% |
| ! | TCAGTTTGGTGGAGCGCCTT+TGG | - | chr6.3:8574698-8574717 | MS.gene86080:CDS | 55.0% |
| ! | TGGGCTAGAATTCCACGCCT+TGG | + | chr6.3:8574062-8574081 | None:intergenic | 55.0% |
| ! | TGGTGGAGCGCCTTTGGAAA+GGG | - | chr6.3:8574704-8574723 | MS.gene86080:CDS | 55.0% |
| ! | TTGGTGGAGCGCCTTTGGAA+AGG | - | chr6.3:8574703-8574722 | MS.gene86080:CDS | 55.0% |
| CATGGCCCTTTGCATGCAGC+AGG | - | chr6.3:8574470-8574489 | MS.gene86080:CDS | 60.0% | |
| CGATGGGACGAACGACTCCA+TGG | - | chr6.3:8574452-8574471 | MS.gene86080:CDS | 60.0% | |
| CTGCTGCATGCAAAGGGCCA+TGG | + | chr6.3:8574472-8574491 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 8573272 | 8575211 | 8573272 | ID=MS.gene86080 |
| chr6.3 | mRNA | 8573272 | 8575211 | 8573272 | ID=MS.gene86080.t1;Parent=MS.gene86080 |
| chr6.3 | exon | 8574184 | 8575211 | 8574184 | ID=MS.gene86080.t1.exon1;Parent=MS.gene86080.t1 |
| chr6.3 | CDS | 8574184 | 8575211 | 8574184 | ID=cds.MS.gene86080.t1;Parent=MS.gene86080.t1 |
| chr6.3 | exon | 8573666 | 8574062 | 8573666 | ID=MS.gene86080.t1.exon2;Parent=MS.gene86080.t1 |
| chr6.3 | CDS | 8573666 | 8574062 | 8573666 | ID=cds.MS.gene86080.t1;Parent=MS.gene86080.t1 |
| chr6.3 | exon | 8573272 | 8573583 | 8573272 | ID=MS.gene86080.t1.exon3;Parent=MS.gene86080.t1 |
| chr6.3 | CDS | 8573272 | 8573583 | 8573272 | ID=cds.MS.gene86080.t1;Parent=MS.gene86080.t1 |
| Gene Sequence |
| Protein sequence |
