Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86130.t1 | XP_003618715.1 | 75.4 | 488 | 44 | 2 | 1 | 416 | 1 | 484 | 2.20E-162 | 582 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86130.t1 | F4I2H7 | 24.3 | 210 | 100 | 1 | 244 | 394 | 522 | 731 | 2.5e-10 | 68.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86130.t1 | G7KMP3 | 75.4 | 488 | 44 | 2 | 1 | 416 | 1 | 484 | 1.6e-162 | 582.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050310 | MS.gene86130 | 0.81451 | 1.49E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene86130 | 0.803767 | 2.98E-49 | -1.69E-46 |
| MS.gene052732 | MS.gene86130 | 0.807209 | 5.65E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene86130 | 0.810618 | 1.05E-50 | -1.69E-46 |
| MS.gene055537 | MS.gene86130 | 0.802249 | 6.14E-49 | -1.69E-46 |
| MS.gene059300 | MS.gene86130 | 0.820864 | 5.48E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86130.t1 | MTR_6g015010 | 96.889 | 225 | 7 | 0 | 192 | 416 | 260 | 484 | 2.91e-157 | 452 |
| MS.gene86130.t1 | MTR_7g013070 | 48.874 | 444 | 182 | 11 | 8 | 416 | 23 | 456 | 1.30e-106 | 322 |
| MS.gene86130.t1 | MTR_3g064800 | 47.009 | 117 | 60 | 1 | 298 | 414 | 49 | 163 | 2.57e-27 | 107 |
| MS.gene86130.t1 | MTR_3g064800 | 47.009 | 117 | 60 | 1 | 298 | 414 | 19 | 133 | 3.89e-27 | 105 |
| MS.gene86130.t1 | MTR_3g064800 | 47.009 | 117 | 60 | 1 | 298 | 414 | 31 | 145 | 4.56e-27 | 105 |
| MS.gene86130.t1 | MTR_4g078565 | 26.415 | 212 | 96 | 4 | 242 | 394 | 511 | 721 | 4.09e-13 | 71.6 |
| MS.gene86130.t1 | MTR_4g078565 | 26.415 | 212 | 96 | 4 | 242 | 394 | 518 | 728 | 4.53e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86130.t1 | AT5G15510 | 47.010 | 485 | 153 | 14 | 11 | 416 | 31 | 490 | 1.56e-119 | 357 |
| MS.gene86130.t1 | AT5G15510 | 47.768 | 448 | 130 | 14 | 11 | 379 | 31 | 453 | 5.87e-107 | 325 |
| MS.gene86130.t1 | AT5G15510 | 47.321 | 448 | 132 | 14 | 11 | 379 | 31 | 453 | 2.16e-106 | 322 |
| MS.gene86130.t1 | AT5G15510 | 47.321 | 448 | 132 | 14 | 11 | 379 | 31 | 453 | 2.16e-106 | 322 |
| MS.gene86130.t1 | AT3G01015 | 45.928 | 442 | 182 | 13 | 11 | 402 | 32 | 466 | 4.94e-101 | 309 |
| MS.gene86130.t1 | AT5G37478 | 54.639 | 97 | 44 | 0 | 296 | 392 | 36 | 132 | 1.92e-28 | 109 |
| MS.gene86130.t1 | AT5G37478 | 54.639 | 97 | 44 | 0 | 296 | 392 | 56 | 152 | 2.96e-28 | 110 |
| MS.gene86130.t1 | AT5G37478 | 54.639 | 97 | 44 | 0 | 296 | 392 | 23 | 119 | 5.85e-28 | 108 |
| MS.gene86130.t1 | AT1G03780 | 26.190 | 210 | 96 | 4 | 244 | 394 | 522 | 731 | 2.25e-13 | 72.4 |
| MS.gene86130.t1 | AT1G03780 | 26.190 | 210 | 96 | 4 | 244 | 394 | 522 | 731 | 2.62e-13 | 72.4 |
Find 83 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCACATTCTCAGTTTCTA+AGG | 0.217493 | 6.3:-9282672 | None:intergenic |
| AGGAATAGTGTACCTGAAAA+TGG | 0.245271 | 6.3:+9283172 | MS.gene86130:CDS |
| TAAGGCATTGGCTGCGCTTT+AGG | 0.259331 | 6.3:-9285670 | None:intergenic |
| AATTTGATTATTCATGATAT+TGG | 0.263242 | 6.3:+9283037 | MS.gene86130:CDS |
| AGGAAGAAATTAGAAGATTA+AGG | 0.282966 | 6.3:+9285635 | MS.gene86130:CDS |
| TTTCGATTAGAAAACTCATT+AGG | 0.285358 | 6.3:-9282695 | None:intergenic |
| ATGTGAAACTTTGGTTCTTT+TGG | 0.287997 | 6.3:-9286029 | None:intergenic |
| CATTACCTCCTCGGAATAAA+TGG | 0.310323 | 6.3:-9285703 | None:intergenic |
| ATAAATGGTCTGTCAAAATA+AGG | 0.316908 | 6.3:-9285688 | None:intergenic |
| TCAAGCACTTGATCTTCTTA+TGG | 0.325673 | 6.3:-9286058 | None:intergenic |
| TTTGATAGAACAGCAGAAAA+TGG | 0.326431 | 6.3:+9285476 | MS.gene86130:CDS |
| GGGTTTCAGCTACTTCTTCT+TGG | 0.338322 | 6.3:+9283443 | MS.gene86130:intron |
| TTCGATTAGAAAACTCATTA+GGG | 0.343147 | 6.3:-9282694 | None:intergenic |
| TCTAAGGGTTTCTTCTTCTC+TGG | 0.345090 | 6.3:-9282656 | None:intergenic |
| AGAGGAAGAAAATGAAGAAA+AGG | 0.356738 | 6.3:+9283096 | MS.gene86130:CDS |
| CATGGAAGACCTTGTGCAAT+AGG | 0.357245 | 6.3:-9284240 | None:intergenic |
| CTTCAGAAATCGTTGAATAA+AGG | 0.377474 | 6.3:+9282722 | MS.gene86130:CDS |
| GGTTTCAGCTACTTCTTCTT+GGG | 0.396182 | 6.3:+9283444 | MS.gene86130:CDS |
| TTGGAATCATCTAGTACTAT+TGG | 0.398723 | 6.3:+9283971 | MS.gene86130:CDS |
| CTATGAAGCTTCACGTCAAT+AGG | 0.408886 | 6.3:-9285310 | None:intergenic |
| GAGGAAGAAAATGAAGAAAA+GGG | 0.416855 | 6.3:+9283097 | MS.gene86130:CDS |
| TCTTCTTGGGATTGTGGCAG+TGG | 0.425689 | 6.3:+9283457 | MS.gene86130:CDS |
| GTGTGTAGCAGGAATTCTTC+TGG | 0.431259 | 6.3:+9283620 | MS.gene86130:CDS |
| GGCTTTGTGCTTTCTTTCAC+CGG | 0.443138 | 6.3:-9285289 | None:intergenic |
| TCGCGCTGAATTTGATCATC+AGG | 0.452548 | 6.3:+9285351 | MS.gene86130:CDS |
| ACCTCAGTCCTTAGCTTGAA+AGG | 0.454283 | 6.3:-9284043 | None:intergenic |
| TGATCAAAGTCCTAAGAAAA+CGG | 0.455541 | 6.3:+9282832 | MS.gene86130:CDS |
| AGAACAGCAGAAAATGGAAA+TGG | 0.455873 | 6.3:+9285482 | MS.gene86130:CDS |
| TGTTGTGCAGTGTGTGTAGC+AGG | 0.461841 | 6.3:+9283609 | MS.gene86130:intron |
| GATCAAAGTCCTAAGAAAAC+GGG | 0.463640 | 6.3:+9282833 | MS.gene86130:CDS |
| GGAATAGTGTACCTGAAAAT+GGG | 0.466587 | 6.3:+9283173 | MS.gene86130:CDS |
| GCGAAGCGTATCGGAGTTTG+AGG | 0.470371 | 6.3:+9282900 | MS.gene86130:CDS |
| GCTACTTCTTCTTGGGATTG+TGG | 0.470448 | 6.3:+9283451 | MS.gene86130:CDS |
| GGGATTGTGGCAGTGGAAGA+AGG | 0.477674 | 6.3:+9283464 | MS.gene86130:CDS |
| ATTGTAGTTCAATGGTGAAA+AGG | 0.482741 | 6.3:+9283122 | MS.gene86130:CDS |
| AAAGGGTAATTGTAGTTCAA+TGG | 0.483615 | 6.3:+9283114 | MS.gene86130:CDS |
| AGAAATTAGAAGATTAAGGA+AGG | 0.491659 | 6.3:+9285639 | MS.gene86130:CDS |
| AAGGAGGAGGGAGAGAGTAA+TGG | 0.491818 | 6.3:+9283141 | MS.gene86130:CDS |
| GCCCTTACAGCTGGCTGAAG+AGG | 0.498637 | 6.3:+9285615 | MS.gene86130:intron |
| GAAGCTTCATAGTGATTTGA+GGG | 0.499102 | 6.3:+9285321 | MS.gene86130:CDS |
| GTACTATTGGAGGAAGGAGG+TGG | 0.500694 | 6.3:+9283984 | MS.gene86130:CDS |
| GAAGAAAATGATGAAGAGAA+AGG | 0.500726 | 6.3:+9282983 | MS.gene86130:CDS |
| TGAAGCTTCATAGTGATTTG+AGG | 0.503817 | 6.3:+9285320 | MS.gene86130:CDS |
| GGAAATGGAAAGGCAACAAA+AGG | 0.506949 | 6.3:+9285497 | MS.gene86130:CDS |
| CTATTGCACAAGGTCTTCCA+TGG | 0.513189 | 6.3:+9284241 | MS.gene86130:CDS |
| CGATGAAGAAGAAGGAGTAG+AGG | 0.513948 | 6.3:+9283078 | MS.gene86130:CDS |
| AGAAGAACAATTGATGAAGA+AGG | 0.519315 | 6.3:+9284179 | MS.gene86130:CDS |
| CTCTGACGAATTCTCTTCTG+CGG | 0.520745 | 6.3:-9282779 | None:intergenic |
| AAATGGGAAAGTGATGCATT+TGG | 0.528141 | 6.3:+9283189 | MS.gene86130:CDS |
| TTATTCAACGATTTCTGAAG+TGG | 0.528946 | 6.3:-9282719 | None:intergenic |
| GTCAGAAACCTTTCAAGCTA+AGG | 0.529285 | 6.3:+9284035 | MS.gene86130:CDS |
| AGTGTGTTTGCGAAGCGTAT+CGG | 0.531754 | 6.3:+9282891 | MS.gene86130:CDS |
| TGGTGAGGTATGTGAAACTT+TGG | 0.533377 | 6.3:-9286038 | None:intergenic |
| TTCACATTCTCAGTTTCTAA+GGG | 0.533557 | 6.3:-9282671 | None:intergenic |
| GTTCAATGGTGAAAAGGAGG+AGG | 0.533936 | 6.3:+9283128 | MS.gene86130:CDS |
| AAAACGGGTTTGTGTAAATG+TGG | 0.539380 | 6.3:+9282848 | MS.gene86130:CDS |
| TTCAATGGTGAAAAGGAGGA+GGG | 0.543684 | 6.3:+9283129 | MS.gene86130:CDS |
| AGGTGAAAATGTTCTTGAAG+AGG | 0.546375 | 6.3:+9283003 | MS.gene86130:CDS |
| AGAGAGTAATGGAAGAAGCA+AGG | 0.549720 | 6.3:+9283152 | MS.gene86130:CDS |
| GCAGTGCTTGCTAAAACCTC+CGG | 0.554487 | 6.3:+9285270 | MS.gene86130:intron |
| TTGATCAACCATTACCTCCT+CGG | 0.562441 | 6.3:-9285712 | None:intergenic |
| CACTTGATCTTCTTATGGTG+AGG | 0.566706 | 6.3:-9286053 | None:intergenic |
| GAATCATCTAGTACTATTGG+AGG | 0.568710 | 6.3:+9283974 | MS.gene86130:CDS |
| TCAGGTTCATCAATAGTCCA+TGG | 0.571822 | 6.3:-9284258 | None:intergenic |
| GTTTGAGGGAATCACAAGAA+GGG | 0.574510 | 6.3:+9282915 | MS.gene86130:CDS |
| GGTCTGTCAAAATAAGGCAT+TGG | 0.582294 | 6.3:-9285682 | None:intergenic |
| TATTCAACGATTTCTGAAGT+GGG | 0.582434 | 6.3:-9282718 | None:intergenic |
| AGTTTGAGGGAATCACAAGA+AGG | 0.584647 | 6.3:+9282914 | MS.gene86130:CDS |
| CGAAGCGTATCGGAGTTTGA+GGG | 0.586037 | 6.3:+9282901 | MS.gene86130:CDS |
| TTGACAGACCATTTATTCCG+AGG | 0.591323 | 6.3:+9285695 | MS.gene86130:CDS |
| AGCAGAAAATGGAAATGGAA+AGG | 0.592553 | 6.3:+9285487 | MS.gene86130:CDS |
| GTAGTTCAATGGTGAAAAGG+AGG | 0.598637 | 6.3:+9283125 | MS.gene86130:CDS |
| CATCTAGTACTATTGGAGGA+AGG | 0.619078 | 6.3:+9283978 | MS.gene86130:CDS |
| TTTGTGCTTTCTTTCACCGG+AGG | 0.623077 | 6.3:-9285286 | None:intergenic |
| GAAAGTGATGCATTTGGTGA+AGG | 0.636336 | 6.3:+9283195 | MS.gene86130:CDS |
| AAATGTGGAGAAAATAGTGA+TGG | 0.637023 | 6.3:+9282863 | MS.gene86130:CDS |
| ACAGACCATTTATTCCGAGG+AGG | 0.649331 | 6.3:+9285698 | MS.gene86130:CDS |
| CTAGTACTATTGGAGGAAGG+AGG | 0.649542 | 6.3:+9283981 | MS.gene86130:CDS |
| ATGAGAATTCCTATTGCACA+AGG | 0.660872 | 6.3:+9284231 | MS.gene86130:CDS |
| ATGGACTATTGATGAACCTG+AGG | 0.663121 | 6.3:+9284260 | MS.gene86130:CDS |
| ACCTTTCAAGCTAAGGACTG+AGG | 0.672965 | 6.3:+9284042 | MS.gene86130:CDS |
| TGTAGCAGGAATTCTTCTGG+TGG | 0.701277 | 6.3:+9283623 | MS.gene86130:CDS |
| AAAATGCTATTGCAGCAAAG+GGG | 0.724639 | 6.3:+9284147 | MS.gene86130:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTGATTATTCATGATAT+TGG | + | chr6.3:9283037-9283056 | MS.gene86130:CDS | 15.0% |
| !!! | ATTATTATATTTTGGTTTGA+AGG | + | chr6.3:9285985-9286004 | MS.gene86130:intron | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+TGG | + | chr6.3:9283779-9283798 | MS.gene86130:intron | 15.0% |
| !! | ACTATAATACTAATGAAGAT+TGG | + | chr6.3:9283880-9283899 | MS.gene86130:intron | 20.0% |
| !! | CAAAGTAAAAAAAATTACAG+TGG | + | chr6.3:9284526-9284545 | MS.gene86130:intron | 20.0% |
| !! | GATTCAATTCACTATTAATA+AGG | + | chr6.3:9283908-9283927 | MS.gene86130:intron | 20.0% |
| !! | TAAAATCTCATAGTCAAATT+TGG | + | chr6.3:9284332-9284351 | MS.gene86130:intron | 20.0% |
| !! | TAATAATGAGACAAGAATAA+TGG | - | chr6.3:9285972-9285991 | None:intergenic | 20.0% |
| !! | TTTGATAAAGAAAAACATTG+AGG | - | chr6.3:9285048-9285067 | None:intergenic | 20.0% |
| !!! | CTTGTCTCATTATTATATTT+TGG | + | chr6.3:9285977-9285996 | MS.gene86130:intron | 20.0% |
| !!! | TAATTGATGACACAAATAAT+TGG | + | chr6.3:9284065-9284084 | MS.gene86130:intron | 20.0% |
| !!! | TTTCGAAAAAGAGAATTTTT+TGG | + | chr6.3:9282940-9282959 | MS.gene86130:CDS | 20.0% |
| ! | ACAAAAAATGCTTAGACTAA+TGG | - | chr6.3:9285249-9285268 | None:intergenic | 25.0% |
| ! | AGAAATTAGAAGATTAAGGA+AGG | + | chr6.3:9285639-9285658 | MS.gene86130:CDS | 25.0% |
| ! | AGAGAATGATAAGAAGAATA+AGG | + | chr6.3:9283273-9283292 | MS.gene86130:intron | 25.0% |
| ! | AGAGGTTACTTAGTATAAAA+AGG | + | chr6.3:9283224-9283243 | MS.gene86130:intron | 25.0% |
| ! | AGATTAACCTAACCTTATTA+AGG | - | chr6.3:9284902-9284921 | None:intergenic | 25.0% |
| ! | AGGAAGAAATTAGAAGATTA+AGG | + | chr6.3:9285635-9285654 | MS.gene86130:CDS | 25.0% |
| ! | ATAAATGGTCTGTCAAAATA+AGG | - | chr6.3:9285691-9285710 | None:intergenic | 25.0% |
| ! | ATACACACTTTAATTGATCT+CGG | - | chr6.3:9285924-9285943 | None:intergenic | 25.0% |
| ! | ATGCTAGGATATTAGATATA+AGG | - | chr6.3:9284747-9284766 | None:intergenic | 25.0% |
| ! | ATGTAATGTACTGTTCTAAT+TGG | - | chr6.3:9284796-9284815 | None:intergenic | 25.0% |
| ! | CACTTTAGATAAAAGAAACA+TGG | - | chr6.3:9285575-9285594 | None:intergenic | 25.0% |
| ! | GAGGTTACTTAGTATAAAAA+GGG | + | chr6.3:9283225-9283244 | MS.gene86130:intron | 25.0% |
| ! | GATTAACCTAACCTTATTAA+GGG | - | chr6.3:9284901-9284920 | None:intergenic | 25.0% |
| ! | TACTAAAAATCTATGAAGCA+GGG | - | chr6.3:9283858-9283877 | None:intergenic | 25.0% |
| ! | TCATGATGTGTAAAACTAAA+GGG | - | chr6.3:9285407-9285426 | None:intergenic | 25.0% |
| ! | TGAATCTATGATAATTCTGT+TGG | + | chr6.3:9285209-9285228 | MS.gene86130:intron | 25.0% |
| ! | TTCATCTTCATATTATGCTT+AGG | - | chr6.3:9285111-9285130 | None:intergenic | 25.0% |
| ! | TTCATGATGTGTAAAACTAA+AGG | - | chr6.3:9285408-9285427 | None:intergenic | 25.0% |
| ! | TTCGATTAGAAAACTCATTA+GGG | - | chr6.3:9282697-9282716 | None:intergenic | 25.0% |
| ! | TTTCGATTAGAAAACTCATT+AGG | - | chr6.3:9282698-9282717 | None:intergenic | 25.0% |
| !! | GTAAAAACTTTTTACACTGA+CGG | + | chr6.3:9284642-9284661 | MS.gene86130:intron | 25.0% |
| !! | TTGATTTGAGATGTGAAAAT+TGG | - | chr6.3:9285534-9285553 | None:intergenic | 25.0% |
| !!! | AAAATGCAACAAGCTTTAAA+GGG | - | chr6.3:9283520-9283539 | None:intergenic | 25.0% |
| !!! | AAATTTTTCAGTGGCTATAT+TGG | + | chr6.3:9284111-9284130 | MS.gene86130:intron | 25.0% |
| !!! | GAGTTTGATTTGATTCATTT+TGG | + | chr6.3:9283544-9283563 | MS.gene86130:intron | 25.0% |
| !!! | GTCATTGATTTGAAATCAAT+TGG | - | chr6.3:9285902-9285921 | None:intergenic | 25.0% |
| !!! | GTTTCTTTCAAATTTTTCAG+TGG | + | chr6.3:9284102-9284121 | MS.gene86130:intron | 25.0% |
| !!! | TATAAAGTTGATTTGACGAA+AGG | + | chr6.3:9285865-9285884 | MS.gene86130:intron | 25.0% |
| AAAGGGTAATTGTAGTTCAA+TGG | + | chr6.3:9283114-9283133 | MS.gene86130:CDS | 30.0% | |
| AAATGTGGAGAAAATAGTGA+TGG | + | chr6.3:9282863-9282882 | MS.gene86130:CDS | 30.0% | |
| AATCTCATAATGAACACTCT+TGG | + | chr6.3:9285733-9285752 | MS.gene86130:intron | 30.0% | |
| AGAAAAATCGATGAAGAAGA+AGG | + | chr6.3:9283070-9283089 | MS.gene86130:CDS | 30.0% | |
| AGAAGAACAATTGATGAAGA+AGG | + | chr6.3:9284179-9284198 | MS.gene86130:CDS | 30.0% | |
| AGAAGAATAAGGTGATGAAA+TGG | + | chr6.3:9283284-9283303 | MS.gene86130:intron | 30.0% | |
| AGAGGAAGAAAATGAAGAAA+AGG | + | chr6.3:9283096-9283115 | MS.gene86130:CDS | 30.0% | |
| AGCATATGCACTTTAAACTA+AGG | - | chr6.3:9284309-9284328 | None:intergenic | 30.0% | |
| ATTGTAGTTCAATGGTGAAA+AGG | + | chr6.3:9283122-9283141 | MS.gene86130:CDS | 30.0% | |
| CAAATCTGTGATAATTCTGT+TGG | + | chr6.3:9285064-9285083 | MS.gene86130:intron | 30.0% | |
| CATAACACAGTTATTGATCT+TGG | + | chr6.3:9285810-9285829 | MS.gene86130:intron | 30.0% | |
| CATGATGTGTAAAACTAAAG+GGG | - | chr6.3:9285406-9285425 | None:intergenic | 30.0% | |
| CTAAAATCATACCACATGAT+GGG | - | chr6.3:9284562-9284581 | None:intergenic | 30.0% | |
| CTACTAAAAATCTATGAAGC+AGG | - | chr6.3:9283859-9283878 | None:intergenic | 30.0% | |
| CTATATCCATAATTGCATGA+TGG | - | chr6.3:9284448-9284467 | None:intergenic | 30.0% | |
| CTTCAGAAATCGTTGAATAA+AGG | + | chr6.3:9282722-9282741 | MS.gene86130:CDS | 30.0% | |
| GAAGAAAATGATGAAGAGAA+AGG | + | chr6.3:9282983-9283002 | MS.gene86130:CDS | 30.0% | |
| GAAGAATAAGGTGATGAAAT+GGG | + | chr6.3:9283285-9283304 | MS.gene86130:intron | 30.0% | |
| GAGGAAGAAAATGAAGAAAA+GGG | + | chr6.3:9283097-9283116 | MS.gene86130:CDS | 30.0% | |
| GATTCAATCATCTTCATGTT+AGG | - | chr6.3:9285195-9285214 | None:intergenic | 30.0% | |
| GTAATGTGTTAACTAAGCAT+AGG | + | chr6.3:9284378-9284397 | MS.gene86130:intron | 30.0% | |
| TAATATCCTAGCATTACACA+TGG | + | chr6.3:9284753-9284772 | MS.gene86130:intron | 30.0% | |
| TCATATTATGCTTAGGCTAA+TGG | - | chr6.3:9285104-9285123 | None:intergenic | 30.0% | |
| TCATTCGATCTCAAAATCAA+TGG | + | chr6.3:9285833-9285852 | MS.gene86130:intron | 30.0% | |
| TGATCAAAGTCCTAAGAAAA+CGG | + | chr6.3:9282832-9282851 | MS.gene86130:CDS | 30.0% | |
| TTCACATTCTCAGTTTCTAA+GGG | - | chr6.3:9282674-9282693 | None:intergenic | 30.0% | |
| TTGGAATCATCTAGTACTAT+TGG | + | chr6.3:9283971-9283990 | MS.gene86130:CDS | 30.0% | |
| TTTGATAGAACAGCAGAAAA+TGG | + | chr6.3:9285476-9285495 | MS.gene86130:CDS | 30.0% | |
| ! | CAAAATGCAACAAGCTTTAA+AGG | - | chr6.3:9283521-9283540 | None:intergenic | 30.0% |
| ! | TCAAGACAGTGTTTTATCAT+TGG | - | chr6.3:9284925-9284944 | None:intergenic | 30.0% |
| ! | TCTAAAATCATACCACATGA+TGG | - | chr6.3:9284563-9284582 | None:intergenic | 30.0% |
| ! | TTATTCAACGATTTCTGAAG+TGG | - | chr6.3:9282722-9282741 | None:intergenic | 30.0% |
| !! | TATTCAACGATTTCTGAAGT+GGG | - | chr6.3:9282721-9282740 | None:intergenic | 30.0% |
| !! | TCATCACTGATTTAAGCTAT+TGG | - | chr6.3:9284477-9284496 | None:intergenic | 30.0% |
| !!! | ATGTGAAACTTTGGTTCTTT+TGG | - | chr6.3:9286032-9286051 | None:intergenic | 30.0% |
| !!! | TTTCTGTGTTTTTTAGAGCT+TGG | + | chr6.3:9283952-9283971 | MS.gene86130:intron | 30.0% |
| !!! | TTTGGTTCTTTTGGTATAGT+TGG | - | chr6.3:9286023-9286042 | None:intergenic | 30.0% |
| AAAAGGGAGAAAGAGAAGAA+TGG | + | chr6.3:9283241-9283260 | MS.gene86130:intron | 35.0% | |
| AAAATGCTATTGCAGCAAAG+GGG | + | chr6.3:9284147-9284166 | MS.gene86130:intron | 35.0% | |
| AAAGGGAGAAAGAGAAGAAT+GGG | + | chr6.3:9283242-9283261 | MS.gene86130:intron | 35.0% | |
| AAATGGGAAAGTGATGCATT+TGG | + | chr6.3:9283189-9283208 | MS.gene86130:CDS | 35.0% | |
| AAGTTCACTAAGTCAATCTC+AGG | - | chr6.3:9285169-9285188 | None:intergenic | 35.0% | |
| AATGAAGGTTCAATGCAGTT+AGG | - | chr6.3:9285144-9285163 | None:intergenic | 35.0% | |
| ACTCGATATCAGCTGATATA+CGG | - | chr6.3:9284948-9284967 | None:intergenic | 35.0% | |
| ACTTTGACATCTGAACAACT+TGG | + | chr6.3:9283409-9283428 | MS.gene86130:intron | 35.0% | |
| AGAAACATGGTAACTCAATC+AGG | - | chr6.3:9285562-9285581 | None:intergenic | 35.0% | |
| AGAACAGCAGAAAATGGAAA+TGG | + | chr6.3:9285482-9285501 | MS.gene86130:CDS | 35.0% | |
| AGCAGAAAATGGAAATGGAA+AGG | + | chr6.3:9285487-9285506 | MS.gene86130:CDS | 35.0% | |
| AGGAATAGTGTACCTGAAAA+TGG | + | chr6.3:9283172-9283191 | MS.gene86130:CDS | 35.0% | |
| AGGTGAAAATGTTCTTGAAG+AGG | + | chr6.3:9283003-9283022 | MS.gene86130:CDS | 35.0% | |
| ATGAGAATTCCTATTGCACA+AGG | + | chr6.3:9284231-9284250 | MS.gene86130:CDS | 35.0% | |
| ATTGAGGCAAACTCAGAAAA+TGG | - | chr6.3:9285032-9285051 | None:intergenic | 35.0% | |
| CAAAATGCTATTGCAGCAAA+GGG | + | chr6.3:9284146-9284165 | MS.gene86130:intron | 35.0% | |
| GAAGCTTCATAGTGATTTGA+GGG | + | chr6.3:9285321-9285340 | MS.gene86130:CDS | 35.0% | |
| GAATCATCTAGTACTATTGG+AGG | + | chr6.3:9283974-9283993 | MS.gene86130:CDS | 35.0% | |
| GATCAAAGTCCTAAGAAAAC+GGG | + | chr6.3:9282833-9282852 | MS.gene86130:CDS | 35.0% | |
| GATCAATAACTGTGTTATGC+AGG | - | chr6.3:9285809-9285828 | None:intergenic | 35.0% | |
| GATCTCAAAATCAATGGCAA+AGG | + | chr6.3:9285839-9285858 | MS.gene86130:intron | 35.0% | |
| GATTGTCCATCATGCAATTA+TGG | + | chr6.3:9284439-9284458 | MS.gene86130:intron | 35.0% | |
| GGAATAGTGTACCTGAAAAT+GGG | + | chr6.3:9283173-9283192 | MS.gene86130:CDS | 35.0% | |
| GTAAAACTAAAGGGGAAAGA+AGG | - | chr6.3:9285398-9285417 | None:intergenic | 35.0% | |
| GTTCACATTCTCAGTTTCTA+AGG | - | chr6.3:9282675-9282694 | None:intergenic | 35.0% | |
| TATATATATGCCCTTACAGC+TGG | + | chr6.3:9285606-9285625 | MS.gene86130:intron | 35.0% | |
| TATCGAGTAAATTCAGCTTC+AGG | + | chr6.3:9284960-9284979 | MS.gene86130:intron | 35.0% | |
| TCAAACACAAACATGGATAC+CGG | - | chr6.3:9283833-9283852 | None:intergenic | 35.0% | |
| TCAAGCACTTGATCTTCTTA+TGG | - | chr6.3:9286061-9286080 | None:intergenic | 35.0% | |
| TCCAATGTAATCATACGTGT+CGG | - | chr6.3:9283754-9283773 | None:intergenic | 35.0% | |
| TCTGGCGTATTATTGAGATT+CGG | + | chr6.3:9285762-9285781 | MS.gene86130:intron | 35.0% | |
| TGAAGCTTCATAGTGATTTG+AGG | + | chr6.3:9285320-9285339 | MS.gene86130:CDS | 35.0% | |
| TGATGAATGCTTAACTGTGT+AGG | + | chr6.3:9285437-9285456 | MS.gene86130:intron | 35.0% | |
| TTACGTGACTGTTGTGAATT+CGG | + | chr6.3:9285944-9285963 | MS.gene86130:intron | 35.0% | |
| TTGTTTGGCTACCCTTAATA+AGG | + | chr6.3:9284887-9284906 | MS.gene86130:intron | 35.0% | |
| ! | AAAACGGGTTTGTGTAAATG+TGG | + | chr6.3:9282848-9282867 | MS.gene86130:CDS | 35.0% |
| ! | TTACACAAACCCGTTTTCTT+AGG | - | chr6.3:9282845-9282864 | None:intergenic | 35.0% |
| !! | AACAACTTGGTTTGGATCAA+AGG | + | chr6.3:9283422-9283441 | MS.gene86130:intron | 35.0% |
| !! | ACAACTTGGTTTGGATCAAA+GGG | + | chr6.3:9283423-9283442 | MS.gene86130:intron | 35.0% |
| !! | ATAATTCTGTTGGTAGCTTC+TGG | + | chr6.3:9285219-9285238 | MS.gene86130:intron | 35.0% |
| !! | ATAATTCTGTTGGTAGTCTC+TGG | + | chr6.3:9285074-9285093 | MS.gene86130:intron | 35.0% |
| !! | ATGATCATTTTTGCTCTTGC+TGG | + | chr6.3:9284863-9284882 | MS.gene86130:intron | 35.0% |
| !! | GAACAATCTGATGTTGTTTC+TGG | + | chr6.3:9283355-9283374 | MS.gene86130:intron | 35.0% |
| !! | TGATCATTTTTGCTCTTGCT+GGG | + | chr6.3:9284864-9284883 | MS.gene86130:intron | 35.0% |
| AAGGGAGAAAGAGAAGAATG+GGG | + | chr6.3:9283243-9283262 | MS.gene86130:intron | 40.0% | |
| ACCGACACGTATGATTACAT+TGG | + | chr6.3:9283750-9283769 | MS.gene86130:intron | 40.0% | |
| AGTCAATCTCAGGCTAATGA+AGG | - | chr6.3:9285159-9285178 | None:intergenic | 40.0% | |
| AGTTTGAGGGAATCACAAGA+AGG | + | chr6.3:9282914-9282933 | MS.gene86130:CDS | 40.0% | |
| CACTTGATCTTCTTATGGTG+AGG | - | chr6.3:9286056-9286075 | None:intergenic | 40.0% | |
| CATCTAGTACTATTGGAGGA+AGG | + | chr6.3:9283978-9283997 | MS.gene86130:CDS | 40.0% | |
| CATTACCTCCTCGGAATAAA+TGG | - | chr6.3:9285706-9285725 | None:intergenic | 40.0% | |
| CATTTATTCCGAGGAGGTAA+TGG | + | chr6.3:9285704-9285723 | MS.gene86130:intron | 40.0% | |
| CCAAAATGCTATTGCAGCAA+AGG | + | chr6.3:9284145-9284164 | MS.gene86130:intron | 40.0% | |
| CCTTCTGATTAAGTCATGTC+CGG | + | chr6.3:9283719-9283738 | MS.gene86130:intron | 40.0% | |
| CTATGAAGCTTCACGTCAAT+AGG | - | chr6.3:9285313-9285332 | None:intergenic | 40.0% | |
| CTATTGATGAACCTGAGGTA+AGG | + | chr6.3:9284265-9284284 | MS.gene86130:intron | 40.0% | |
| GACATCTGAACAACTTGGTT+TGG | + | chr6.3:9283414-9283433 | MS.gene86130:intron | 40.0% | |
| GATGGACAATCAGAGACTAA+TGG | - | chr6.3:9284430-9284449 | None:intergenic | 40.0% | |
| GCAATTTCAACAACCTGTCA+AGG | + | chr6.3:9283321-9283340 | MS.gene86130:intron | 40.0% | |
| GCTGAATTTGATCATCAGGT+AGG | + | chr6.3:9285355-9285374 | MS.gene86130:intron | 40.0% | |
| GGAAATGGAAAGGCAACAAA+AGG | + | chr6.3:9285497-9285516 | MS.gene86130:CDS | 40.0% | |
| GGTCTGTCAAAATAAGGCAT+TGG | - | chr6.3:9285685-9285704 | None:intergenic | 40.0% | |
| GGTTGTTGAAATTGCAATCC+TGG | - | chr6.3:9283316-9283335 | None:intergenic | 40.0% | |
| GGTTTCAGCTACTTCTTCTT+GGG | + | chr6.3:9283444-9283463 | MS.gene86130:CDS | 40.0% | |
| GTACTTTACAACCCATCATG+TGG | + | chr6.3:9284548-9284567 | MS.gene86130:intron | 40.0% | |
| GTAGTTCAATGGTGAAAAGG+AGG | + | chr6.3:9283125-9283144 | MS.gene86130:CDS | 40.0% | |
| GTCAGAAACCTTTCAAGCTA+AGG | + | chr6.3:9284035-9284054 | MS.gene86130:CDS | 40.0% | |
| GTTAGTGTTTGTGTCATGTC+CGG | + | chr6.3:9283811-9283830 | MS.gene86130:intron | 40.0% | |
| GTTTGAGGGAATCACAAGAA+GGG | + | chr6.3:9282915-9282934 | MS.gene86130:CDS | 40.0% | |
| TCAGGTTCATCAATAGTCCA+TGG | - | chr6.3:9284261-9284280 | None:intergenic | 40.0% | |
| TCTAAGGGTTTCTTCTTCTC+TGG | - | chr6.3:9282659-9282678 | None:intergenic | 40.0% | |
| TGAATGCTTAACTGTGTAGG+TGG | + | chr6.3:9285440-9285459 | MS.gene86130:intron | 40.0% | |
| TGAGAAAATGACCTTACCTC+AGG | - | chr6.3:9284279-9284298 | None:intergenic | 40.0% | |
| TGGCTACCCTTAATAAGGTT+AGG | + | chr6.3:9284892-9284911 | MS.gene86130:intron | 40.0% | |
| TGGTGAGGTATGTGAAACTT+TGG | - | chr6.3:9286041-9286060 | None:intergenic | 40.0% | |
| TTCAATGGTGAAAAGGAGGA+GGG | + | chr6.3:9283129-9283148 | MS.gene86130:CDS | 40.0% | |
| TTGACAGACCATTTATTCCG+AGG | + | chr6.3:9285695-9285714 | MS.gene86130:CDS | 40.0% | |
| TTGATCAACCATTACCTCCT+CGG | - | chr6.3:9285715-9285734 | None:intergenic | 40.0% | |
| TTTCAACAACCTGTCAAGGA+TGG | + | chr6.3:9283325-9283344 | MS.gene86130:intron | 40.0% | |
| ! | AGAGAGTAATGGAAGAAGCA+AGG | + | chr6.3:9283152-9283171 | MS.gene86130:CDS | 40.0% |
| ! | ATGGACTATTGATGAACCTG+AGG | + | chr6.3:9284260-9284279 | MS.gene86130:CDS | 40.0% |
| ! | CCTTTGCTGCAATAGCATTT+TGG | - | chr6.3:9284148-9284167 | None:intergenic | 40.0% |
| ! | GAAAGTGATGCATTTGGTGA+AGG | + | chr6.3:9283195-9283214 | MS.gene86130:CDS | 40.0% |
| ! | GAACACTCTTGGAAGTTTTC+TGG | + | chr6.3:9285744-9285763 | MS.gene86130:intron | 40.0% |
| ! | TGCATCACTTTCCCATTTTC+AGG | - | chr6.3:9283187-9283206 | None:intergenic | 40.0% |
| !! | ATTTGGTGAAGGCTTTTGAG+AGG | + | chr6.3:9283206-9283225 | MS.gene86130:CDS | 40.0% |
| !! | GTTTCTGGTTGTGATGATGA+TGG | + | chr6.3:9283370-9283389 | MS.gene86130:intron | 40.0% |
| !! | TGGCTATATTGGTGATGCAT+TGG | + | chr6.3:9284122-9284141 | MS.gene86130:intron | 40.0% |
| ACAGACCATTTATTCCGAGG+AGG | + | chr6.3:9285698-9285717 | MS.gene86130:CDS | 45.0% | |
| ACCTTTCAAGCTAAGGACTG+AGG | + | chr6.3:9284042-9284061 | MS.gene86130:CDS | 45.0% | |
| AGTGTGTTTGCGAAGCGTAT+CGG | + | chr6.3:9282891-9282910 | MS.gene86130:CDS | 45.0% | |
| CAGGGACTCAAACACAAACA+TGG | - | chr6.3:9283840-9283859 | None:intergenic | 45.0% | |
| CATGGAAGACCTTGTGCAAT+AGG | - | chr6.3:9284243-9284262 | None:intergenic | 45.0% | |
| CCGGACATGACTTAATCAGA+AGG | - | chr6.3:9283722-9283741 | None:intergenic | 45.0% | |
| CGATGAAGAAGAAGGAGTAG+AGG | + | chr6.3:9283078-9283097 | MS.gene86130:CDS | 45.0% | |
| CTAGTACTATTGGAGGAAGG+AGG | + | chr6.3:9283981-9284000 | MS.gene86130:CDS | 45.0% | |
| CTATTGCACAAGGTCTTCCA+TGG | + | chr6.3:9284241-9284260 | MS.gene86130:CDS | 45.0% | |
| CTCTGACGAATTCTCTTCTG+CGG | - | chr6.3:9282782-9282801 | None:intergenic | 45.0% | |
| GAAAGAGAAGAATGGGGAAG+AGG | + | chr6.3:9283249-9283268 | MS.gene86130:intron | 45.0% | |
| GCTACTTCTTCTTGGGATTG+TGG | + | chr6.3:9283451-9283470 | MS.gene86130:CDS | 45.0% | |
| GGGTTTCAGCTACTTCTTCT+TGG | + | chr6.3:9283443-9283462 | MS.gene86130:intron | 45.0% | |
| GTGATGAAATGGGCATTACC+AGG | + | chr6.3:9283295-9283314 | MS.gene86130:intron | 45.0% | |
| GTGTGTAGCAGGAATTCTTC+TGG | + | chr6.3:9283620-9283639 | MS.gene86130:CDS | 45.0% | |
| GTTCAATGGTGAAAAGGAGG+AGG | + | chr6.3:9283128-9283147 | MS.gene86130:CDS | 45.0% | |
| TCATCATCACCATCCTTGAC+AGG | - | chr6.3:9283337-9283356 | None:intergenic | 45.0% | |
| TCCTAGCATTACACATGGCA+AGG | + | chr6.3:9284758-9284777 | MS.gene86130:intron | 45.0% | |
| TCCTTGCCATGTGTAATGCT+AGG | - | chr6.3:9284762-9284781 | None:intergenic | 45.0% | |
| TCGCGCTGAATTTGATCATC+AGG | + | chr6.3:9285351-9285370 | MS.gene86130:CDS | 45.0% | |
| TGTAGCAGGAATTCTTCTGG+TGG | + | chr6.3:9283623-9283642 | MS.gene86130:CDS | 45.0% | |
| TTTGCTCTTGCTGGGTTGTT+TGG | + | chr6.3:9284872-9284891 | MS.gene86130:intron | 45.0% | |
| TTTGTGCTTTCTTTCACCGG+AGG | - | chr6.3:9285289-9285308 | None:intergenic | 45.0% | |
| ! | ACCTCAGTCCTTAGCTTGAA+AGG | - | chr6.3:9284046-9284065 | None:intergenic | 45.0% |
| ! | GGCTTTGTGCTTTCTTTCAC+CGG | - | chr6.3:9285292-9285311 | None:intergenic | 45.0% |
| AAGGAGGAGGGAGAGAGTAA+TGG | + | chr6.3:9283141-9283160 | MS.gene86130:CDS | 50.0% | |
| CGAAGCGTATCGGAGTTTGA+GGG | + | chr6.3:9282901-9282920 | MS.gene86130:CDS | 50.0% | |
| GTACTATTGGAGGAAGGAGG+TGG | + | chr6.3:9283984-9284003 | MS.gene86130:CDS | 50.0% | |
| TCCTCTTCAGCCAGCTGTAA+GGG | - | chr6.3:9285619-9285638 | None:intergenic | 50.0% | |
| TCTTCTTGGGATTGTGGCAG+TGG | + | chr6.3:9283457-9283476 | MS.gene86130:CDS | 50.0% | |
| TGTTGTGCAGTGTGTGTAGC+AGG | + | chr6.3:9283609-9283628 | MS.gene86130:intron | 50.0% | |
| TTCCTCTTCAGCCAGCTGTA+AGG | - | chr6.3:9285620-9285639 | None:intergenic | 50.0% | |
| ! | GCAGTGCTTGCTAAAACCTC+CGG | + | chr6.3:9285270-9285289 | MS.gene86130:intron | 50.0% |
| !! | TAAGGCATTGGCTGCGCTTT+AGG | - | chr6.3:9285673-9285692 | None:intergenic | 50.0% |
| GCGAAGCGTATCGGAGTTTG+AGG | + | chr6.3:9282900-9282919 | MS.gene86130:CDS | 55.0% | |
| GGGATTGTGGCAGTGGAAGA+AGG | + | chr6.3:9283464-9283483 | MS.gene86130:CDS | 55.0% | |
| !! | TACGTGTCGGTGTCAGACAC+CGG | - | chr6.3:9283741-9283760 | None:intergenic | 55.0% |
| GCCCTTACAGCTGGCTGAAG+AGG | + | chr6.3:9285615-9285634 | MS.gene86130:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 9282650 | 9286121 | 9282650 | ID=MS.gene86130 |
| chr6.3 | mRNA | 9282650 | 9286121 | 9282650 | ID=MS.gene86130.t1;Parent=MS.gene86130 |
| chr6.3 | exon | 9282650 | 9283227 | 9282650 | ID=MS.gene86130.t1.exon1;Parent=MS.gene86130.t1 |
| chr6.3 | CDS | 9282650 | 9283227 | 9282650 | ID=cds.MS.gene86130.t1;Parent=MS.gene86130.t1 |
| chr6.3 | exon | 9283444 | 9283485 | 9283444 | ID=MS.gene86130.t1.exon2;Parent=MS.gene86130.t1 |
| chr6.3 | CDS | 9283444 | 9283485 | 9283444 | ID=cds.MS.gene86130.t1;Parent=MS.gene86130.t1 |
| chr6.3 | exon | 9283619 | 9283664 | 9283619 | ID=MS.gene86130.t1.exon3;Parent=MS.gene86130.t1 |
| chr6.3 | CDS | 9283619 | 9283664 | 9283619 | ID=cds.MS.gene86130.t1;Parent=MS.gene86130.t1 |
| chr6.3 | exon | 9283968 | 9284063 | 9283968 | ID=MS.gene86130.t1.exon4;Parent=MS.gene86130.t1 |
| chr6.3 | CDS | 9283968 | 9284063 | 9283968 | ID=cds.MS.gene86130.t1;Parent=MS.gene86130.t1 |
| chr6.3 | exon | 9284162 | 9284281 | 9284162 | ID=MS.gene86130.t1.exon5;Parent=MS.gene86130.t1 |
| chr6.3 | CDS | 9284162 | 9284281 | 9284162 | ID=cds.MS.gene86130.t1;Parent=MS.gene86130.t1 |
| chr6.3 | exon | 9285274 | 9285372 | 9285274 | ID=MS.gene86130.t1.exon6;Parent=MS.gene86130.t1 |
| chr6.3 | CDS | 9285274 | 9285372 | 9285274 | ID=cds.MS.gene86130.t1;Parent=MS.gene86130.t1 |
| chr6.3 | exon | 9285459 | 9285518 | 9285459 | ID=MS.gene86130.t1.exon7;Parent=MS.gene86130.t1 |
| chr6.3 | CDS | 9285459 | 9285518 | 9285459 | ID=cds.MS.gene86130.t1;Parent=MS.gene86130.t1 |
| chr6.3 | exon | 9285625 | 9285719 | 9285625 | ID=MS.gene86130.t1.exon8;Parent=MS.gene86130.t1 |
| chr6.3 | CDS | 9285625 | 9285719 | 9285625 | ID=cds.MS.gene86130.t1;Parent=MS.gene86130.t1 |
| chr6.3 | exon | 9286007 | 9286121 | 9286007 | ID=MS.gene86130.t1.exon9;Parent=MS.gene86130.t1 |
| chr6.3 | CDS | 9286007 | 9286121 | 9286007 | ID=cds.MS.gene86130.t1;Parent=MS.gene86130.t1 |
| Gene Sequence |
| Protein sequence |
