Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86281.t1 | XP_003588657.1 | 90 | 489 | 37 | 3 | 1 | 484 | 1 | 482 | 3.20E-93 | 352.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86281.t1 | G7I5R9 | 90.0 | 489 | 37 | 3 | 1 | 484 | 1 | 482 | 2.3e-93 | 352.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05952 | MS.gene86281 | 0.804357 | 2.25E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86281.t1 | MTR_1g009660 | 86.094 | 489 | 56 | 3 | 1 | 484 | 1 | 482 | 0.0 | 667 |
| MS.gene86281.t1 | MTR_3g108830 | 74.468 | 47 | 11 | 1 | 439 | 484 | 446 | 492 | 8.77e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 82 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAATGATCTTCTTCTTAA+TGG | 0.099182 | 1.3:-10539243 | None:intergenic |
| CAACAACAATTAGCAGTAAA+AGG | 0.190834 | 1.3:+10540317 | MS.gene86281:CDS |
| CTTGGTGTCTTATTTGAAAT+AGG | 0.246453 | 1.3:-10539426 | None:intergenic |
| CTTAATGGAGAAGGTTTAAC+TGG | 0.266544 | 1.3:-10539228 | None:intergenic |
| AAATAAGCTAGTTGGGAAAA+AGG | 0.276009 | 1.3:+10539458 | MS.gene86281:CDS |
| GTTGTGGGCTTTAGATAGTT+TGG | 0.276367 | 1.3:-10539177 | None:intergenic |
| ATCATTAGCTACCTTCTTAG+AGG | 0.287986 | 1.3:-10539526 | None:intergenic |
| ATCACAGCTTTGATCTTTGC+AGG | 0.297205 | 1.3:-10539567 | None:intergenic |
| ACTGCTAATTGTTGTTGCTT+TGG | 0.334106 | 1.3:-10540311 | None:intergenic |
| TTGTGGGCTTTAGATAGTTT+GGG | 0.351132 | 1.3:-10539176 | None:intergenic |
| GGAAACTGCAAGCAAGCTAT+TGG | 0.368236 | 1.3:+10540379 | MS.gene86281:CDS |
| GAAACTGCAAGCAAGCTATT+GGG | 0.374785 | 1.3:+10540380 | MS.gene86281:CDS |
| GAAAAGAAAGAAAATGAAAG+TGG | 0.386555 | 1.3:+10540008 | MS.gene86281:CDS |
| GAAAAGGAAGAAAATGAAAG+TGG | 0.386555 | 1.3:+10540086 | MS.gene86281:CDS |
| GAAAAGGAAGAAAATGAAAG+TGG | 0.386555 | 1.3:+10540164 | MS.gene86281:CDS |
| CAAAAGGAAGAAAATGAAAG+TGG | 0.392066 | 1.3:+10539930 | MS.gene86281:CDS |
| GATCTGCTTCACTAACTAAT+AGG | 0.400951 | 1.3:+10539364 | MS.gene86281:CDS |
| AGCTGTTTGAAACTTGTTGT+GGG | 0.415610 | 1.3:-10539192 | None:intergenic |
| AGAACAAGGAGGGGAAGAGA+AGG | 0.423533 | 1.3:+10540229 | MS.gene86281:CDS |
| AACAAGGTTCTTGCATTGGC+TGG | 0.424301 | 1.3:+10540410 | MS.gene86281:CDS |
| AAAGAAAGTAGTACACTTGT+TGG | 0.425952 | 1.3:+10539030 | MS.gene86281:CDS |
| GAGAAGGAAGCTGTTGAAGG+AGG | 0.427486 | 1.3:+10540245 | MS.gene86281:CDS |
| GATTTATCTCAAGTATCTAA+TGG | 0.432672 | 1.3:+10540347 | MS.gene86281:CDS |
| CGAAGTTTCTGTGATTGAAA+AGG | 0.434643 | 1.3:+10540070 | MS.gene86281:CDS |
| AGAAGGAAGCTGTTGAAGGA+GGG | 0.434821 | 1.3:+10540246 | MS.gene86281:CDS |
| CGAAGTTTCTGTGATTCAAA+AGG | 0.437082 | 1.3:+10539914 | MS.gene86281:CDS |
| CTCTAGGGCCAGGGGAAACA+AGG | 0.437459 | 1.3:-10539338 | None:intergenic |
| AGACCAAGAAGTAGAAGAAA+AGG | 0.438530 | 1.3:+10539797 | MS.gene86281:CDS |
| GACAAAAGAAGTTGATCGTT+CGG | 0.453551 | 1.3:+10539881 | MS.gene86281:CDS |
| GTTGAAATGACTTTCTCATA+AGG | 0.454229 | 1.3:-10539768 | None:intergenic |
| GAGGTAGGTGTTGTTGTGGA+TGG | 0.457906 | 1.3:-10539108 | None:intergenic |
| CTCTTGTTTGTTGTTGAGGT+AGG | 0.465729 | 1.3:-10539123 | None:intergenic |
| GCAGATCTTTCTCTAGGGCC+AGG | 0.468580 | 1.3:-10539348 | None:intergenic |
| GAAGAGAAGGAAGCTGTTGA+AGG | 0.470608 | 1.3:+10540242 | MS.gene86281:CDS |
| TGCAACTTCGCTTTCAACCT+CGG | 0.472275 | 1.3:-10540135 | None:intergenic |
| GAGCTGTTTGAAACTTGTTG+TGG | 0.482060 | 1.3:-10539193 | None:intergenic |
| GAAGGAAGCTGTTGAAGGAG+GGG | 0.483098 | 1.3:+10540247 | MS.gene86281:CDS |
| CACAAAGCCCTTGTTTCCCC+TGG | 0.483515 | 1.3:+10539330 | MS.gene86281:CDS |
| AACAACAATTAGCAGTAAAA+GGG | 0.485734 | 1.3:+10540318 | MS.gene86281:CDS |
| CTCTGAACTATTACATGAGC+AGG | 0.488566 | 1.3:+10539713 | MS.gene86281:CDS |
| GTTACTCTTGTTTGTTGTTG+AGG | 0.494787 | 1.3:-10539127 | None:intergenic |
| AAGAAAGTAGTACACTTGTT+GGG | 0.496347 | 1.3:+10539031 | MS.gene86281:CDS |
| AGTGAAGCAGATCTTTCTCT+AGG | 0.499485 | 1.3:-10539354 | None:intergenic |
| CGAAGTTGCAGTGAATGAAA+AGG | 0.503697 | 1.3:+10540148 | MS.gene86281:CDS |
| AGAAGTTGAAGTGATAAAAG+TGG | 0.511607 | 1.3:+10539647 | MS.gene86281:CDS |
| TGAAACTGAGGATGTTAAAG+AGG | 0.512584 | 1.3:+10539614 | MS.gene86281:CDS |
| GAAGAACAAGGTTCTTGCAT+TGG | 0.514933 | 1.3:+10540406 | MS.gene86281:CDS |
| AGTATCTAATGGTATGATTG+AGG | 0.519661 | 1.3:+10540358 | MS.gene86281:CDS |
| AGAAACTTCGCTTTCAACCT+CGG | 0.521170 | 1.3:-10540057 | None:intergenic |
| GTTAAGTTTGAAGATGAAAG+TGG | 0.525002 | 1.3:-10539270 | None:intergenic |
| TGTTGAGGTAGGTGTTGTTG+TGG | 0.526424 | 1.3:-10539112 | None:intergenic |
| GATCTTCTTCTTAATGGAGA+AGG | 0.527948 | 1.3:-10539237 | None:intergenic |
| AATAGTTCAGAGATGACATC+AGG | 0.540223 | 1.3:-10539702 | None:intergenic |
| CTTCTATCACAACAACCAAA+AGG | 0.542669 | 1.3:+10539076 | MS.gene86281:CDS |
| AGAAAAGGAGTCACAAGAAG+AGG | 0.549465 | 1.3:+10539812 | MS.gene86281:CDS |
| TACTTCTAAAACCTCTAAGA+AGG | 0.551648 | 1.3:+10539515 | MS.gene86281:CDS |
| CAGATCTTTCTCTAGGGCCA+GGG | 0.557632 | 1.3:-10539347 | None:intergenic |
| AAAAGAAAGAAAATGAAAGT+GGG | 0.558618 | 1.3:+10540009 | MS.gene86281:CDS |
| AAAAGGAAGAAAATGAAAGT+GGG | 0.558618 | 1.3:+10540087 | MS.gene86281:CDS |
| AAAAGGAAGAAAATGAAAGT+GGG | 0.558618 | 1.3:+10540165 | MS.gene86281:CDS |
| AAAAGGAAGAAAATGAAAGT+GGG | 0.561058 | 1.3:+10539931 | MS.gene86281:CDS |
| TTTGTGTAGTCTTGAAAGAG+AGG | 0.569388 | 1.3:-10539313 | None:intergenic |
| AGTTGAAGAAGCTAAGATTG+AGG | 0.569432 | 1.3:+10540280 | MS.gene86281:CDS |
| TCACAGCTTTGATCTTTGCA+GGG | 0.589780 | 1.3:-10539566 | None:intergenic |
| ACAATGGAGAAGAACAAGGA+GGG | 0.590973 | 1.3:+10540219 | MS.gene86281:CDS |
| CAGAAAAGTGAGAACAACAA+TGG | 0.593589 | 1.3:+10540203 | MS.gene86281:CDS |
| GTGAAGCAGATCTTTCTCTA+GGG | 0.593867 | 1.3:-10539353 | None:intergenic |
| AAACTGCAAGCAAGCTATTG+GGG | 0.593923 | 1.3:+10540381 | MS.gene86281:CDS |
| GTACACTTGTTGGGAATGAG+AGG | 0.595873 | 1.3:+10539040 | MS.gene86281:CDS |
| TCTAGGGCCAGGGGAAACAA+GGG | 0.597582 | 1.3:-10539337 | None:intergenic |
| CAATGGAGAAGAACAAGGAG+GGG | 0.612731 | 1.3:+10540220 | MS.gene86281:CDS |
| CTCATCAAGTGTTGAAACTG+AGG | 0.626044 | 1.3:+10539602 | MS.gene86281:CDS |
| AGATCTTTCTCTAGGGCCAG+GGG | 0.629471 | 1.3:-10539346 | None:intergenic |
| GCTATTGGGGAGGAAGAACA+AGG | 0.635012 | 1.3:+10540394 | MS.gene86281:CDS |
| AGAAGAAGTTGACCGTTCCG+AGG | 0.641677 | 1.3:+10540118 | MS.gene86281:CDS |
| CTTCGCTTTCAACCTCGGAA+CGG | 0.645320 | 1.3:-10540130 | None:intergenic |
| AGAAGAAGCTGATCATTCTG+AGG | 0.655122 | 1.3:+10539962 | MS.gene86281:CDS |
| AAAAGAAGTTGATCGTTCGG+AGG | 0.657420 | 1.3:+10539884 | MS.gene86281:CDS |
| AGAAGAAGTTGATCGTTCCG+AGG | 0.659716 | 1.3:+10540040 | MS.gene86281:CDS |
| AACAACAATGGAGAAGAACA+AGG | 0.668634 | 1.3:+10540215 | MS.gene86281:CDS |
| CTGCAAGCAAGCTATTGGGG+AGG | 0.684251 | 1.3:+10540384 | MS.gene86281:CDS |
| AACAATGGAGAAGAACAAGG+AGG | 0.694534 | 1.3:+10540218 | MS.gene86281:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAAGAAAATGAAAGT+GGG | + | chr1.3:10540009-10540028 | MS.gene86281:CDS | 20.0% |
| !!! | TATTTGAAATAGGTTTTGAA+GGG | - | chr1.3:10539419-10539438 | None:intergenic | 20.0% |
| !!! | TTATTTGAAATAGGTTTTGA+AGG | - | chr1.3:10539420-10539439 | None:intergenic | 20.0% |
| ! | AAAAGGAAGAAAATGAAAGT+GGG | + | chr1.3:10539931-10539950 | MS.gene86281:CDS | 25.0% |
| ! | AACAACAATTAGCAGTAAAA+GGG | + | chr1.3:10540318-10540337 | MS.gene86281:CDS | 25.0% |
| ! | ATGCAAAAAATAAGCTAGTT+GGG | + | chr1.3:10539451-10539470 | MS.gene86281:CDS | 25.0% |
| ! | GAAAAGAAAGAAAATGAAAG+TGG | + | chr1.3:10540008-10540027 | MS.gene86281:CDS | 25.0% |
| ! | GATTTATCTCAAGTATCTAA+TGG | + | chr1.3:10540347-10540366 | MS.gene86281:CDS | 25.0% |
| ! | TCTAATGATCTTCTTCTTAA+TGG | - | chr1.3:10539246-10539265 | None:intergenic | 25.0% |
| AAAGAAAGTAGTACACTTGT+TGG | + | chr1.3:10539030-10539049 | MS.gene86281:CDS | 30.0% | |
| AAATAAGCTAGTTGGGAAAA+AGG | + | chr1.3:10539458-10539477 | MS.gene86281:CDS | 30.0% | |
| AAGAAAGTAGTACACTTGTT+GGG | + | chr1.3:10539031-10539050 | MS.gene86281:CDS | 30.0% | |
| AGAAGTTGAAGTGATAAAAG+TGG | + | chr1.3:10539647-10539666 | MS.gene86281:CDS | 30.0% | |
| AGTATCTAATGGTATGATTG+AGG | + | chr1.3:10540358-10540377 | MS.gene86281:CDS | 30.0% | |
| CAAAAGGAAGAAAATGAAAG+TGG | + | chr1.3:10539930-10539949 | MS.gene86281:CDS | 30.0% | |
| CAACAACAATTAGCAGTAAA+AGG | + | chr1.3:10540317-10540336 | MS.gene86281:CDS | 30.0% | |
| GAAAAGGAAGAAAATGAAAG+TGG | + | chr1.3:10540086-10540105 | MS.gene86281:CDS | 30.0% | |
| GATGCAAAAAATAAGCTAGT+TGG | + | chr1.3:10539450-10539469 | MS.gene86281:CDS | 30.0% | |
| GTTAAGTTTGAAGATGAAAG+TGG | - | chr1.3:10539273-10539292 | None:intergenic | 30.0% | |
| GTTGAAATGACTTTCTCATA+AGG | - | chr1.3:10539771-10539790 | None:intergenic | 30.0% | |
| ! | CTTTTATCACTTCAACTTCT+TGG | - | chr1.3:10539647-10539666 | None:intergenic | 30.0% |
| ! | GGAACATGATCAAATTTTTG+AGG | + | chr1.3:10539734-10539753 | MS.gene86281:CDS | 30.0% |
| !! | AGAGAGGTTTCTTTTTGTTT+TGG | - | chr1.3:10539300-10539319 | None:intergenic | 30.0% |
| !! | CTTGGTGTCTTATTTGAAAT+AGG | - | chr1.3:10539429-10539448 | None:intergenic | 30.0% |
| !! | TACTTCTAAAACCTCTAAGA+AGG | + | chr1.3:10539515-10539534 | MS.gene86281:CDS | 30.0% |
| !!! | AGCTTATTTTTTGCATCACT+TGG | - | chr1.3:10539447-10539466 | None:intergenic | 30.0% |
| AACAACAATGGAGAAGAACA+AGG | + | chr1.3:10540215-10540234 | MS.gene86281:CDS | 35.0% | |
| AATAGTTCAGAGATGACATC+AGG | - | chr1.3:10539705-10539724 | None:intergenic | 35.0% | |
| AGACCAAGAAGTAGAAGAAA+AGG | + | chr1.3:10539797-10539816 | MS.gene86281:CDS | 35.0% | |
| AGTTGAAGAAGCTAAGATTG+AGG | + | chr1.3:10540280-10540299 | MS.gene86281:CDS | 35.0% | |
| ATCATTAGCTACCTTCTTAG+AGG | - | chr1.3:10539529-10539548 | None:intergenic | 35.0% | |
| CAGAAAAGTGAGAACAACAA+TGG | + | chr1.3:10540203-10540222 | MS.gene86281:CDS | 35.0% | |
| CGAAGTTTCTGTGATTCAAA+AGG | + | chr1.3:10539914-10539933 | MS.gene86281:CDS | 35.0% | |
| CGAAGTTTCTGTGATTGAAA+AGG | + | chr1.3:10540070-10540089 | MS.gene86281:CDS | 35.0% | |
| CTTAATGGAGAAGGTTTAAC+TGG | - | chr1.3:10539231-10539250 | None:intergenic | 35.0% | |
| CTTCTATCACAACAACCAAA+AGG | + | chr1.3:10539076-10539095 | MS.gene86281:CDS | 35.0% | |
| GATCTGCTTCACTAACTAAT+AGG | + | chr1.3:10539364-10539383 | MS.gene86281:CDS | 35.0% | |
| GATCTTCTTCTTAATGGAGA+AGG | - | chr1.3:10539240-10539259 | None:intergenic | 35.0% | |
| TGAAACTGAGGATGTTAAAG+AGG | + | chr1.3:10539614-10539633 | MS.gene86281:CDS | 35.0% | |
| ! | ACTCCTTTTCTTCTACTTCT+TGG | - | chr1.3:10539803-10539822 | None:intergenic | 35.0% |
| ! | ACTGCTAATTGTTGTTGCTT+TGG | - | chr1.3:10540314-10540333 | None:intergenic | 35.0% |
| ! | GACAAAAGAAGTTGATCGTT+CGG | + | chr1.3:10539881-10539900 | MS.gene86281:CDS | 35.0% |
| ! | TTGGGATGTTTTTCTCTGAT+GGG | - | chr1.3:10539161-10539180 | None:intergenic | 35.0% |
| ! | TTTGTGTAGTCTTGAAAGAG+AGG | - | chr1.3:10539316-10539335 | None:intergenic | 35.0% |
| !! | AGCTGTTTGAAACTTGTTGT+GGG | - | chr1.3:10539195-10539214 | None:intergenic | 35.0% |
| !! | CTTTTGGTTGTTGTGATAGA+AGG | - | chr1.3:10539078-10539097 | None:intergenic | 35.0% |
| !! | GTTACTCTTGTTTGTTGTTG+AGG | - | chr1.3:10539130-10539149 | None:intergenic | 35.0% |
| !! | TTGTGGGCTTTAGATAGTTT+GGG | - | chr1.3:10539179-10539198 | None:intergenic | 35.0% |
| !! | TTTGGGATGTTTTTCTCTGA+TGG | - | chr1.3:10539162-10539181 | None:intergenic | 35.0% |
| !!! | TGAAATAGGTTTTGAAGGGT+TGG | - | chr1.3:10539415-10539434 | None:intergenic | 35.0% |
| AAACTGCAAGCAAGCTATTG+GGG | + | chr1.3:10540381-10540400 | MS.gene86281:CDS | 40.0% | |
| AACAATGGAGAAGAACAAGG+AGG | + | chr1.3:10540218-10540237 | MS.gene86281:CDS | 40.0% | |
| ACAATGGAGAAGAACAAGGA+GGG | + | chr1.3:10540219-10540238 | MS.gene86281:CDS | 40.0% | |
| AGAAAAGGAGTCACAAGAAG+AGG | + | chr1.3:10539812-10539831 | MS.gene86281:CDS | 40.0% | |
| AGAAACTTCGCTTTCAACCT+CGG | - | chr1.3:10539904-10539923 | None:intergenic | 40.0% | |
| AGAAGAAGCTGATCATTCTG+AGG | + | chr1.3:10539962-10539981 | MS.gene86281:CDS | 40.0% | |
| AGTGAAGCAGATCTTTCTCT+AGG | - | chr1.3:10539357-10539376 | None:intergenic | 40.0% | |
| CGAAGTTGCAGTGAATGAAA+AGG | + | chr1.3:10540148-10540167 | MS.gene86281:CDS | 40.0% | |
| CTCTGAACTATTACATGAGC+AGG | + | chr1.3:10539713-10539732 | MS.gene86281:CDS | 40.0% | |
| GAAACTGCAAGCAAGCTATT+GGG | + | chr1.3:10540380-10540399 | MS.gene86281:CDS | 40.0% | |
| GAAGAACAAGGTTCTTGCAT+TGG | + | chr1.3:10540406-10540425 | MS.gene86281:CDS | 40.0% | |
| GTGAAGCAGATCTTTCTCTA+GGG | - | chr1.3:10539356-10539375 | None:intergenic | 40.0% | |
| ! | AAAAGAAGTTGATCGTTCGG+AGG | + | chr1.3:10539884-10539903 | MS.gene86281:CDS | 40.0% |
| ! | ATCACAGCTTTGATCTTTGC+AGG | - | chr1.3:10539570-10539589 | None:intergenic | 40.0% |
| ! | TCACAGCTTTGATCTTTGCA+GGG | - | chr1.3:10539569-10539588 | None:intergenic | 40.0% |
| ! | TGGGATGTTTTTCTCTGATG+GGG | - | chr1.3:10539160-10539179 | None:intergenic | 40.0% |
| !! | CTCATCAAGTGTTGAAACTG+AGG | + | chr1.3:10539602-10539621 | MS.gene86281:CDS | 40.0% |
| !! | CTCTTGTTTGTTGTTGAGGT+AGG | - | chr1.3:10539126-10539145 | None:intergenic | 40.0% |
| !! | GAGCTGTTTGAAACTTGTTG+TGG | - | chr1.3:10539196-10539215 | None:intergenic | 40.0% |
| !! | GTTGTGGGCTTTAGATAGTT+TGG | - | chr1.3:10539180-10539199 | None:intergenic | 40.0% |
| !! | TGTTGTTGTGGATGGTTTTG+TGG | - | chr1.3:10539103-10539122 | None:intergenic | 40.0% |
| !!! | GAAGGGTTGGTACTTTTAAC+TGG | - | chr1.3:10539402-10539421 | None:intergenic | 40.0% |
| AGAAGGAAGCTGTTGAAGGA+GGG | + | chr1.3:10540246-10540265 | MS.gene86281:CDS | 45.0% | |
| CAATGGAGAAGAACAAGGAG+GGG | + | chr1.3:10540220-10540239 | MS.gene86281:CDS | 45.0% | |
| GAAGAGAAGGAAGCTGTTGA+AGG | + | chr1.3:10540242-10540261 | MS.gene86281:CDS | 45.0% | |
| GGAAACTGCAAGCAAGCTAT+TGG | + | chr1.3:10540379-10540398 | MS.gene86281:CDS | 45.0% | |
| TGCAACTTCGCTTTCAACCT+CGG | - | chr1.3:10540138-10540157 | None:intergenic | 45.0% | |
| ! | AACAAGGTTCTTGCATTGGC+TGG | + | chr1.3:10540410-10540429 | MS.gene86281:CDS | 45.0% |
| ! | AGAAGAAGTTGATCGTTCCG+AGG | + | chr1.3:10540040-10540059 | MS.gene86281:CDS | 45.0% |
| ! | GTACACTTGTTGGGAATGAG+AGG | + | chr1.3:10539040-10539059 | MS.gene86281:CDS | 45.0% |
| !! | TGTTGAGGTAGGTGTTGTTG+TGG | - | chr1.3:10539115-10539134 | None:intergenic | 45.0% |
| !!! | GGATGGTTTTGTGGTCCTTT+TGG | - | chr1.3:10539094-10539113 | None:intergenic | 45.0% |
| AGAACAAGGAGGGGAAGAGA+AGG | + | chr1.3:10540229-10540248 | MS.gene86281:CDS | 50.0% | |
| AGAAGAAGTTGACCGTTCCG+AGG | + | chr1.3:10540118-10540137 | MS.gene86281:CDS | 50.0% | |
| CTTCGCTTTCAACCTCGGAA+CGG | - | chr1.3:10540055-10540074 | None:intergenic | 50.0% | |
| GAAGGAAGCTGTTGAAGGAG+GGG | + | chr1.3:10540247-10540266 | MS.gene86281:CDS | 50.0% | |
| GAGAAGGAAGCTGTTGAAGG+AGG | + | chr1.3:10540245-10540264 | MS.gene86281:CDS | 50.0% | |
| GCTATTGGGGAGGAAGAACA+AGG | + | chr1.3:10540394-10540413 | MS.gene86281:CDS | 50.0% | |
| !! | AGATCTTTCTCTAGGGCCAG+GGG | - | chr1.3:10539349-10539368 | None:intergenic | 50.0% |
| !! | CAGATCTTTCTCTAGGGCCA+GGG | - | chr1.3:10539350-10539369 | None:intergenic | 50.0% |
| !! | GAGGTAGGTGTTGTTGTGGA+TGG | - | chr1.3:10539111-10539130 | None:intergenic | 50.0% |
| CTGCAAGCAAGCTATTGGGG+AGG | + | chr1.3:10540384-10540403 | MS.gene86281:CDS | 55.0% | |
| ! | CACAAAGCCCTTGTTTCCCC+TGG | + | chr1.3:10539330-10539349 | MS.gene86281:CDS | 55.0% |
| ! | TCTAGGGCCAGGGGAAACAA+GGG | - | chr1.3:10539340-10539359 | None:intergenic | 55.0% |
| !! | GCAGATCTTTCTCTAGGGCC+AGG | - | chr1.3:10539351-10539370 | None:intergenic | 55.0% |
| !! | CTCTAGGGCCAGGGGAAACA+AGG | - | chr1.3:10539341-10539360 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 10539015 | 10540469 | 10539015 | ID=MS.gene86281 |
| chr1.3 | mRNA | 10539015 | 10540469 | 10539015 | ID=MS.gene86281.t1;Parent=MS.gene86281 |
| chr1.3 | exon | 10539015 | 10540469 | 10539015 | ID=MS.gene86281.t1.exon1;Parent=MS.gene86281.t1 |
| chr1.3 | CDS | 10539015 | 10540469 | 10539015 | ID=cds.MS.gene86281.t1;Parent=MS.gene86281.t1 |
| Gene Sequence |
| Protein sequence |