Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86281.t1 | XP_003588657.1 | 90 | 489 | 37 | 3 | 1 | 484 | 1 | 482 | 3.20E-93 | 352.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86281.t1 | G7I5R9 | 90.0 | 489 | 37 | 3 | 1 | 484 | 1 | 482 | 2.3e-93 | 352.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05952 | MS.gene86281 | 0.804357 | 2.25E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86281.t1 | MTR_1g009660 | 86.094 | 489 | 56 | 3 | 1 | 484 | 1 | 482 | 0.0 | 667 |
MS.gene86281.t1 | MTR_3g108830 | 74.468 | 47 | 11 | 1 | 439 | 484 | 446 | 492 | 8.77e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 82 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTAATGATCTTCTTCTTAA+TGG | 0.099182 | 1.3:-10539243 | None:intergenic |
CAACAACAATTAGCAGTAAA+AGG | 0.190834 | 1.3:+10540317 | MS.gene86281:CDS |
CTTGGTGTCTTATTTGAAAT+AGG | 0.246453 | 1.3:-10539426 | None:intergenic |
CTTAATGGAGAAGGTTTAAC+TGG | 0.266544 | 1.3:-10539228 | None:intergenic |
AAATAAGCTAGTTGGGAAAA+AGG | 0.276009 | 1.3:+10539458 | MS.gene86281:CDS |
GTTGTGGGCTTTAGATAGTT+TGG | 0.276367 | 1.3:-10539177 | None:intergenic |
ATCATTAGCTACCTTCTTAG+AGG | 0.287986 | 1.3:-10539526 | None:intergenic |
ATCACAGCTTTGATCTTTGC+AGG | 0.297205 | 1.3:-10539567 | None:intergenic |
ACTGCTAATTGTTGTTGCTT+TGG | 0.334106 | 1.3:-10540311 | None:intergenic |
TTGTGGGCTTTAGATAGTTT+GGG | 0.351132 | 1.3:-10539176 | None:intergenic |
GGAAACTGCAAGCAAGCTAT+TGG | 0.368236 | 1.3:+10540379 | MS.gene86281:CDS |
GAAACTGCAAGCAAGCTATT+GGG | 0.374785 | 1.3:+10540380 | MS.gene86281:CDS |
GAAAAGAAAGAAAATGAAAG+TGG | 0.386555 | 1.3:+10540008 | MS.gene86281:CDS |
GAAAAGGAAGAAAATGAAAG+TGG | 0.386555 | 1.3:+10540086 | MS.gene86281:CDS |
GAAAAGGAAGAAAATGAAAG+TGG | 0.386555 | 1.3:+10540164 | MS.gene86281:CDS |
CAAAAGGAAGAAAATGAAAG+TGG | 0.392066 | 1.3:+10539930 | MS.gene86281:CDS |
GATCTGCTTCACTAACTAAT+AGG | 0.400951 | 1.3:+10539364 | MS.gene86281:CDS |
AGCTGTTTGAAACTTGTTGT+GGG | 0.415610 | 1.3:-10539192 | None:intergenic |
AGAACAAGGAGGGGAAGAGA+AGG | 0.423533 | 1.3:+10540229 | MS.gene86281:CDS |
AACAAGGTTCTTGCATTGGC+TGG | 0.424301 | 1.3:+10540410 | MS.gene86281:CDS |
AAAGAAAGTAGTACACTTGT+TGG | 0.425952 | 1.3:+10539030 | MS.gene86281:CDS |
GAGAAGGAAGCTGTTGAAGG+AGG | 0.427486 | 1.3:+10540245 | MS.gene86281:CDS |
GATTTATCTCAAGTATCTAA+TGG | 0.432672 | 1.3:+10540347 | MS.gene86281:CDS |
CGAAGTTTCTGTGATTGAAA+AGG | 0.434643 | 1.3:+10540070 | MS.gene86281:CDS |
AGAAGGAAGCTGTTGAAGGA+GGG | 0.434821 | 1.3:+10540246 | MS.gene86281:CDS |
CGAAGTTTCTGTGATTCAAA+AGG | 0.437082 | 1.3:+10539914 | MS.gene86281:CDS |
CTCTAGGGCCAGGGGAAACA+AGG | 0.437459 | 1.3:-10539338 | None:intergenic |
AGACCAAGAAGTAGAAGAAA+AGG | 0.438530 | 1.3:+10539797 | MS.gene86281:CDS |
GACAAAAGAAGTTGATCGTT+CGG | 0.453551 | 1.3:+10539881 | MS.gene86281:CDS |
GTTGAAATGACTTTCTCATA+AGG | 0.454229 | 1.3:-10539768 | None:intergenic |
GAGGTAGGTGTTGTTGTGGA+TGG | 0.457906 | 1.3:-10539108 | None:intergenic |
CTCTTGTTTGTTGTTGAGGT+AGG | 0.465729 | 1.3:-10539123 | None:intergenic |
GCAGATCTTTCTCTAGGGCC+AGG | 0.468580 | 1.3:-10539348 | None:intergenic |
GAAGAGAAGGAAGCTGTTGA+AGG | 0.470608 | 1.3:+10540242 | MS.gene86281:CDS |
TGCAACTTCGCTTTCAACCT+CGG | 0.472275 | 1.3:-10540135 | None:intergenic |
GAGCTGTTTGAAACTTGTTG+TGG | 0.482060 | 1.3:-10539193 | None:intergenic |
GAAGGAAGCTGTTGAAGGAG+GGG | 0.483098 | 1.3:+10540247 | MS.gene86281:CDS |
CACAAAGCCCTTGTTTCCCC+TGG | 0.483515 | 1.3:+10539330 | MS.gene86281:CDS |
AACAACAATTAGCAGTAAAA+GGG | 0.485734 | 1.3:+10540318 | MS.gene86281:CDS |
CTCTGAACTATTACATGAGC+AGG | 0.488566 | 1.3:+10539713 | MS.gene86281:CDS |
GTTACTCTTGTTTGTTGTTG+AGG | 0.494787 | 1.3:-10539127 | None:intergenic |
AAGAAAGTAGTACACTTGTT+GGG | 0.496347 | 1.3:+10539031 | MS.gene86281:CDS |
AGTGAAGCAGATCTTTCTCT+AGG | 0.499485 | 1.3:-10539354 | None:intergenic |
CGAAGTTGCAGTGAATGAAA+AGG | 0.503697 | 1.3:+10540148 | MS.gene86281:CDS |
AGAAGTTGAAGTGATAAAAG+TGG | 0.511607 | 1.3:+10539647 | MS.gene86281:CDS |
TGAAACTGAGGATGTTAAAG+AGG | 0.512584 | 1.3:+10539614 | MS.gene86281:CDS |
GAAGAACAAGGTTCTTGCAT+TGG | 0.514933 | 1.3:+10540406 | MS.gene86281:CDS |
AGTATCTAATGGTATGATTG+AGG | 0.519661 | 1.3:+10540358 | MS.gene86281:CDS |
AGAAACTTCGCTTTCAACCT+CGG | 0.521170 | 1.3:-10540057 | None:intergenic |
GTTAAGTTTGAAGATGAAAG+TGG | 0.525002 | 1.3:-10539270 | None:intergenic |
TGTTGAGGTAGGTGTTGTTG+TGG | 0.526424 | 1.3:-10539112 | None:intergenic |
GATCTTCTTCTTAATGGAGA+AGG | 0.527948 | 1.3:-10539237 | None:intergenic |
AATAGTTCAGAGATGACATC+AGG | 0.540223 | 1.3:-10539702 | None:intergenic |
CTTCTATCACAACAACCAAA+AGG | 0.542669 | 1.3:+10539076 | MS.gene86281:CDS |
AGAAAAGGAGTCACAAGAAG+AGG | 0.549465 | 1.3:+10539812 | MS.gene86281:CDS |
TACTTCTAAAACCTCTAAGA+AGG | 0.551648 | 1.3:+10539515 | MS.gene86281:CDS |
CAGATCTTTCTCTAGGGCCA+GGG | 0.557632 | 1.3:-10539347 | None:intergenic |
AAAAGAAAGAAAATGAAAGT+GGG | 0.558618 | 1.3:+10540009 | MS.gene86281:CDS |
AAAAGGAAGAAAATGAAAGT+GGG | 0.558618 | 1.3:+10540087 | MS.gene86281:CDS |
AAAAGGAAGAAAATGAAAGT+GGG | 0.558618 | 1.3:+10540165 | MS.gene86281:CDS |
AAAAGGAAGAAAATGAAAGT+GGG | 0.561058 | 1.3:+10539931 | MS.gene86281:CDS |
TTTGTGTAGTCTTGAAAGAG+AGG | 0.569388 | 1.3:-10539313 | None:intergenic |
AGTTGAAGAAGCTAAGATTG+AGG | 0.569432 | 1.3:+10540280 | MS.gene86281:CDS |
TCACAGCTTTGATCTTTGCA+GGG | 0.589780 | 1.3:-10539566 | None:intergenic |
ACAATGGAGAAGAACAAGGA+GGG | 0.590973 | 1.3:+10540219 | MS.gene86281:CDS |
CAGAAAAGTGAGAACAACAA+TGG | 0.593589 | 1.3:+10540203 | MS.gene86281:CDS |
GTGAAGCAGATCTTTCTCTA+GGG | 0.593867 | 1.3:-10539353 | None:intergenic |
AAACTGCAAGCAAGCTATTG+GGG | 0.593923 | 1.3:+10540381 | MS.gene86281:CDS |
GTACACTTGTTGGGAATGAG+AGG | 0.595873 | 1.3:+10539040 | MS.gene86281:CDS |
TCTAGGGCCAGGGGAAACAA+GGG | 0.597582 | 1.3:-10539337 | None:intergenic |
CAATGGAGAAGAACAAGGAG+GGG | 0.612731 | 1.3:+10540220 | MS.gene86281:CDS |
CTCATCAAGTGTTGAAACTG+AGG | 0.626044 | 1.3:+10539602 | MS.gene86281:CDS |
AGATCTTTCTCTAGGGCCAG+GGG | 0.629471 | 1.3:-10539346 | None:intergenic |
GCTATTGGGGAGGAAGAACA+AGG | 0.635012 | 1.3:+10540394 | MS.gene86281:CDS |
AGAAGAAGTTGACCGTTCCG+AGG | 0.641677 | 1.3:+10540118 | MS.gene86281:CDS |
CTTCGCTTTCAACCTCGGAA+CGG | 0.645320 | 1.3:-10540130 | None:intergenic |
AGAAGAAGCTGATCATTCTG+AGG | 0.655122 | 1.3:+10539962 | MS.gene86281:CDS |
AAAAGAAGTTGATCGTTCGG+AGG | 0.657420 | 1.3:+10539884 | MS.gene86281:CDS |
AGAAGAAGTTGATCGTTCCG+AGG | 0.659716 | 1.3:+10540040 | MS.gene86281:CDS |
AACAACAATGGAGAAGAACA+AGG | 0.668634 | 1.3:+10540215 | MS.gene86281:CDS |
CTGCAAGCAAGCTATTGGGG+AGG | 0.684251 | 1.3:+10540384 | MS.gene86281:CDS |
AACAATGGAGAAGAACAAGG+AGG | 0.694534 | 1.3:+10540218 | MS.gene86281:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAGAAAGAAAATGAAAGT+GGG | + | chr1.3:10540009-10540028 | MS.gene86281:CDS | 20.0% |
!!! | TATTTGAAATAGGTTTTGAA+GGG | - | chr1.3:10539419-10539438 | None:intergenic | 20.0% |
!!! | TTATTTGAAATAGGTTTTGA+AGG | - | chr1.3:10539420-10539439 | None:intergenic | 20.0% |
! | AAAAGGAAGAAAATGAAAGT+GGG | + | chr1.3:10539931-10539950 | MS.gene86281:CDS | 25.0% |
! | AACAACAATTAGCAGTAAAA+GGG | + | chr1.3:10540318-10540337 | MS.gene86281:CDS | 25.0% |
! | ATGCAAAAAATAAGCTAGTT+GGG | + | chr1.3:10539451-10539470 | MS.gene86281:CDS | 25.0% |
! | GAAAAGAAAGAAAATGAAAG+TGG | + | chr1.3:10540008-10540027 | MS.gene86281:CDS | 25.0% |
! | GATTTATCTCAAGTATCTAA+TGG | + | chr1.3:10540347-10540366 | MS.gene86281:CDS | 25.0% |
! | TCTAATGATCTTCTTCTTAA+TGG | - | chr1.3:10539246-10539265 | None:intergenic | 25.0% |
AAAGAAAGTAGTACACTTGT+TGG | + | chr1.3:10539030-10539049 | MS.gene86281:CDS | 30.0% | |
AAATAAGCTAGTTGGGAAAA+AGG | + | chr1.3:10539458-10539477 | MS.gene86281:CDS | 30.0% | |
AAGAAAGTAGTACACTTGTT+GGG | + | chr1.3:10539031-10539050 | MS.gene86281:CDS | 30.0% | |
AGAAGTTGAAGTGATAAAAG+TGG | + | chr1.3:10539647-10539666 | MS.gene86281:CDS | 30.0% | |
AGTATCTAATGGTATGATTG+AGG | + | chr1.3:10540358-10540377 | MS.gene86281:CDS | 30.0% | |
CAAAAGGAAGAAAATGAAAG+TGG | + | chr1.3:10539930-10539949 | MS.gene86281:CDS | 30.0% | |
CAACAACAATTAGCAGTAAA+AGG | + | chr1.3:10540317-10540336 | MS.gene86281:CDS | 30.0% | |
GAAAAGGAAGAAAATGAAAG+TGG | + | chr1.3:10540086-10540105 | MS.gene86281:CDS | 30.0% | |
GATGCAAAAAATAAGCTAGT+TGG | + | chr1.3:10539450-10539469 | MS.gene86281:CDS | 30.0% | |
GTTAAGTTTGAAGATGAAAG+TGG | - | chr1.3:10539273-10539292 | None:intergenic | 30.0% | |
GTTGAAATGACTTTCTCATA+AGG | - | chr1.3:10539771-10539790 | None:intergenic | 30.0% | |
! | CTTTTATCACTTCAACTTCT+TGG | - | chr1.3:10539647-10539666 | None:intergenic | 30.0% |
! | GGAACATGATCAAATTTTTG+AGG | + | chr1.3:10539734-10539753 | MS.gene86281:CDS | 30.0% |
!! | AGAGAGGTTTCTTTTTGTTT+TGG | - | chr1.3:10539300-10539319 | None:intergenic | 30.0% |
!! | CTTGGTGTCTTATTTGAAAT+AGG | - | chr1.3:10539429-10539448 | None:intergenic | 30.0% |
!! | TACTTCTAAAACCTCTAAGA+AGG | + | chr1.3:10539515-10539534 | MS.gene86281:CDS | 30.0% |
!!! | AGCTTATTTTTTGCATCACT+TGG | - | chr1.3:10539447-10539466 | None:intergenic | 30.0% |
AACAACAATGGAGAAGAACA+AGG | + | chr1.3:10540215-10540234 | MS.gene86281:CDS | 35.0% | |
AATAGTTCAGAGATGACATC+AGG | - | chr1.3:10539705-10539724 | None:intergenic | 35.0% | |
AGACCAAGAAGTAGAAGAAA+AGG | + | chr1.3:10539797-10539816 | MS.gene86281:CDS | 35.0% | |
AGTTGAAGAAGCTAAGATTG+AGG | + | chr1.3:10540280-10540299 | MS.gene86281:CDS | 35.0% | |
ATCATTAGCTACCTTCTTAG+AGG | - | chr1.3:10539529-10539548 | None:intergenic | 35.0% | |
CAGAAAAGTGAGAACAACAA+TGG | + | chr1.3:10540203-10540222 | MS.gene86281:CDS | 35.0% | |
CGAAGTTTCTGTGATTCAAA+AGG | + | chr1.3:10539914-10539933 | MS.gene86281:CDS | 35.0% | |
CGAAGTTTCTGTGATTGAAA+AGG | + | chr1.3:10540070-10540089 | MS.gene86281:CDS | 35.0% | |
CTTAATGGAGAAGGTTTAAC+TGG | - | chr1.3:10539231-10539250 | None:intergenic | 35.0% | |
CTTCTATCACAACAACCAAA+AGG | + | chr1.3:10539076-10539095 | MS.gene86281:CDS | 35.0% | |
GATCTGCTTCACTAACTAAT+AGG | + | chr1.3:10539364-10539383 | MS.gene86281:CDS | 35.0% | |
GATCTTCTTCTTAATGGAGA+AGG | - | chr1.3:10539240-10539259 | None:intergenic | 35.0% | |
TGAAACTGAGGATGTTAAAG+AGG | + | chr1.3:10539614-10539633 | MS.gene86281:CDS | 35.0% | |
! | ACTCCTTTTCTTCTACTTCT+TGG | - | chr1.3:10539803-10539822 | None:intergenic | 35.0% |
! | ACTGCTAATTGTTGTTGCTT+TGG | - | chr1.3:10540314-10540333 | None:intergenic | 35.0% |
! | GACAAAAGAAGTTGATCGTT+CGG | + | chr1.3:10539881-10539900 | MS.gene86281:CDS | 35.0% |
! | TTGGGATGTTTTTCTCTGAT+GGG | - | chr1.3:10539161-10539180 | None:intergenic | 35.0% |
! | TTTGTGTAGTCTTGAAAGAG+AGG | - | chr1.3:10539316-10539335 | None:intergenic | 35.0% |
!! | AGCTGTTTGAAACTTGTTGT+GGG | - | chr1.3:10539195-10539214 | None:intergenic | 35.0% |
!! | CTTTTGGTTGTTGTGATAGA+AGG | - | chr1.3:10539078-10539097 | None:intergenic | 35.0% |
!! | GTTACTCTTGTTTGTTGTTG+AGG | - | chr1.3:10539130-10539149 | None:intergenic | 35.0% |
!! | TTGTGGGCTTTAGATAGTTT+GGG | - | chr1.3:10539179-10539198 | None:intergenic | 35.0% |
!! | TTTGGGATGTTTTTCTCTGA+TGG | - | chr1.3:10539162-10539181 | None:intergenic | 35.0% |
!!! | TGAAATAGGTTTTGAAGGGT+TGG | - | chr1.3:10539415-10539434 | None:intergenic | 35.0% |
AAACTGCAAGCAAGCTATTG+GGG | + | chr1.3:10540381-10540400 | MS.gene86281:CDS | 40.0% | |
AACAATGGAGAAGAACAAGG+AGG | + | chr1.3:10540218-10540237 | MS.gene86281:CDS | 40.0% | |
ACAATGGAGAAGAACAAGGA+GGG | + | chr1.3:10540219-10540238 | MS.gene86281:CDS | 40.0% | |
AGAAAAGGAGTCACAAGAAG+AGG | + | chr1.3:10539812-10539831 | MS.gene86281:CDS | 40.0% | |
AGAAACTTCGCTTTCAACCT+CGG | - | chr1.3:10539904-10539923 | None:intergenic | 40.0% | |
AGAAGAAGCTGATCATTCTG+AGG | + | chr1.3:10539962-10539981 | MS.gene86281:CDS | 40.0% | |
AGTGAAGCAGATCTTTCTCT+AGG | - | chr1.3:10539357-10539376 | None:intergenic | 40.0% | |
CGAAGTTGCAGTGAATGAAA+AGG | + | chr1.3:10540148-10540167 | MS.gene86281:CDS | 40.0% | |
CTCTGAACTATTACATGAGC+AGG | + | chr1.3:10539713-10539732 | MS.gene86281:CDS | 40.0% | |
GAAACTGCAAGCAAGCTATT+GGG | + | chr1.3:10540380-10540399 | MS.gene86281:CDS | 40.0% | |
GAAGAACAAGGTTCTTGCAT+TGG | + | chr1.3:10540406-10540425 | MS.gene86281:CDS | 40.0% | |
GTGAAGCAGATCTTTCTCTA+GGG | - | chr1.3:10539356-10539375 | None:intergenic | 40.0% | |
! | AAAAGAAGTTGATCGTTCGG+AGG | + | chr1.3:10539884-10539903 | MS.gene86281:CDS | 40.0% |
! | ATCACAGCTTTGATCTTTGC+AGG | - | chr1.3:10539570-10539589 | None:intergenic | 40.0% |
! | TCACAGCTTTGATCTTTGCA+GGG | - | chr1.3:10539569-10539588 | None:intergenic | 40.0% |
! | TGGGATGTTTTTCTCTGATG+GGG | - | chr1.3:10539160-10539179 | None:intergenic | 40.0% |
!! | CTCATCAAGTGTTGAAACTG+AGG | + | chr1.3:10539602-10539621 | MS.gene86281:CDS | 40.0% |
!! | CTCTTGTTTGTTGTTGAGGT+AGG | - | chr1.3:10539126-10539145 | None:intergenic | 40.0% |
!! | GAGCTGTTTGAAACTTGTTG+TGG | - | chr1.3:10539196-10539215 | None:intergenic | 40.0% |
!! | GTTGTGGGCTTTAGATAGTT+TGG | - | chr1.3:10539180-10539199 | None:intergenic | 40.0% |
!! | TGTTGTTGTGGATGGTTTTG+TGG | - | chr1.3:10539103-10539122 | None:intergenic | 40.0% |
!!! | GAAGGGTTGGTACTTTTAAC+TGG | - | chr1.3:10539402-10539421 | None:intergenic | 40.0% |
AGAAGGAAGCTGTTGAAGGA+GGG | + | chr1.3:10540246-10540265 | MS.gene86281:CDS | 45.0% | |
CAATGGAGAAGAACAAGGAG+GGG | + | chr1.3:10540220-10540239 | MS.gene86281:CDS | 45.0% | |
GAAGAGAAGGAAGCTGTTGA+AGG | + | chr1.3:10540242-10540261 | MS.gene86281:CDS | 45.0% | |
GGAAACTGCAAGCAAGCTAT+TGG | + | chr1.3:10540379-10540398 | MS.gene86281:CDS | 45.0% | |
TGCAACTTCGCTTTCAACCT+CGG | - | chr1.3:10540138-10540157 | None:intergenic | 45.0% | |
! | AACAAGGTTCTTGCATTGGC+TGG | + | chr1.3:10540410-10540429 | MS.gene86281:CDS | 45.0% |
! | AGAAGAAGTTGATCGTTCCG+AGG | + | chr1.3:10540040-10540059 | MS.gene86281:CDS | 45.0% |
! | GTACACTTGTTGGGAATGAG+AGG | + | chr1.3:10539040-10539059 | MS.gene86281:CDS | 45.0% |
!! | TGTTGAGGTAGGTGTTGTTG+TGG | - | chr1.3:10539115-10539134 | None:intergenic | 45.0% |
!!! | GGATGGTTTTGTGGTCCTTT+TGG | - | chr1.3:10539094-10539113 | None:intergenic | 45.0% |
AGAACAAGGAGGGGAAGAGA+AGG | + | chr1.3:10540229-10540248 | MS.gene86281:CDS | 50.0% | |
AGAAGAAGTTGACCGTTCCG+AGG | + | chr1.3:10540118-10540137 | MS.gene86281:CDS | 50.0% | |
CTTCGCTTTCAACCTCGGAA+CGG | - | chr1.3:10540055-10540074 | None:intergenic | 50.0% | |
GAAGGAAGCTGTTGAAGGAG+GGG | + | chr1.3:10540247-10540266 | MS.gene86281:CDS | 50.0% | |
GAGAAGGAAGCTGTTGAAGG+AGG | + | chr1.3:10540245-10540264 | MS.gene86281:CDS | 50.0% | |
GCTATTGGGGAGGAAGAACA+AGG | + | chr1.3:10540394-10540413 | MS.gene86281:CDS | 50.0% | |
!! | AGATCTTTCTCTAGGGCCAG+GGG | - | chr1.3:10539349-10539368 | None:intergenic | 50.0% |
!! | CAGATCTTTCTCTAGGGCCA+GGG | - | chr1.3:10539350-10539369 | None:intergenic | 50.0% |
!! | GAGGTAGGTGTTGTTGTGGA+TGG | - | chr1.3:10539111-10539130 | None:intergenic | 50.0% |
CTGCAAGCAAGCTATTGGGG+AGG | + | chr1.3:10540384-10540403 | MS.gene86281:CDS | 55.0% | |
! | CACAAAGCCCTTGTTTCCCC+TGG | + | chr1.3:10539330-10539349 | MS.gene86281:CDS | 55.0% |
! | TCTAGGGCCAGGGGAAACAA+GGG | - | chr1.3:10539340-10539359 | None:intergenic | 55.0% |
!! | GCAGATCTTTCTCTAGGGCC+AGG | - | chr1.3:10539351-10539370 | None:intergenic | 55.0% |
!! | CTCTAGGGCCAGGGGAAACA+AGG | - | chr1.3:10539341-10539360 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 10539015 | 10540469 | 10539015 | ID=MS.gene86281 |
chr1.3 | mRNA | 10539015 | 10540469 | 10539015 | ID=MS.gene86281.t1;Parent=MS.gene86281 |
chr1.3 | exon | 10539015 | 10540469 | 10539015 | ID=MS.gene86281.t1.exon1;Parent=MS.gene86281.t1 |
chr1.3 | CDS | 10539015 | 10540469 | 10539015 | ID=cds.MS.gene86281.t1;Parent=MS.gene86281.t1 |
Gene Sequence |
Protein sequence |