AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86482


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86482.t1 MTR_5g025230 91.910 581 44 1 1 581 1 578 0.0 1100
MS.gene86482.t1 MTR_5g025250 87.435 581 71 2 1 581 1 579 0.0 1032
MS.gene86482.t1 MTR_5g025270 83.705 583 91 4 1 581 1 581 0.0 993
MS.gene86482.t1 MTR_2g070460 37.587 572 329 13 16 577 55 608 2.62e-125 382
MS.gene86482.t1 MTR_8g037315 38.911 514 283 9 85 577 33 536 5.64e-113 347
MS.gene86482.t1 MTR_8g037275 36.345 498 289 10 101 577 81 571 1.90e-100 316
MS.gene86482.t1 MTR_8g037310 36.273 499 290 9 100 577 80 571 9.57e-99 311
MS.gene86482.t1 MTR_8g037290 35.743 498 292 11 101 577 81 571 3.73e-97 308
MS.gene86482.t1 MTR_3g110195 28.022 546 324 18 74 570 53 578 1.32e-51 187
MS.gene86482.t1 MTR_7g063800 25.911 494 292 23 122 570 98 562 2.52e-23 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86482.t1 AT4G19170 66.373 568 177 6 22 578 31 595 0.0 771
MS.gene86482.t1 AT1G30100 41.020 490 276 10 93 575 102 585 9.34e-125 379
MS.gene86482.t1 AT4G18350 37.303 571 341 11 16 575 15 579 1.54e-119 366
MS.gene86482.t1 AT3G14440 40.000 495 283 9 93 580 112 599 1.74e-119 366
MS.gene86482.t1 AT3G63520 39.423 520 290 8 80 580 24 537 2.37e-119 364
MS.gene86482.t1 AT1G78390 37.684 544 323 10 47 581 121 657 1.29e-118 366
MS.gene86482.t1 AT3G24220 37.817 513 300 12 77 577 69 574 1.71e-102 322
MS.gene86482.t1 AT4G32810 24.663 519 298 22 123 570 97 593 1.63e-22 102

Find 141 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGTCGTTAATATTATTA+TGG 0.149416 5.1:+15740250 None:intergenic
AATCCAATGCCGAAGATTTC+TGG 0.178109 5.1:-15738838 MS.gene86482:CDS
ATTCGAATCAAAACGGAAAT+AGG 0.265855 5.1:+15739356 None:intergenic
ACCAATCCAATGCCGTTAGA+TGG 0.267522 5.1:+15739597 None:intergenic
CGTTAATATTATTATGGGTT+TGG 0.288073 5.1:+15740256 None:intergenic
CGTGGAAGGAACTGTGCGTT+TGG 0.299835 5.1:+15739846 None:intergenic
AATCATAACGGCCTATTGTT+TGG 0.310222 5.1:+15739481 None:intergenic
GTTAATATTATTATGGGTTT+GGG 0.311116 5.1:+15740257 None:intergenic
TCAAGATTCCTCACCGATAA+AGG 0.323521 5.1:+15738925 None:intergenic
CCTGTGTCGCTGTCTACTTT+AGG 0.344114 5.1:+15739423 None:intergenic
TTAGTCGTTAATATTATTAT+GGG 0.348727 5.1:+15740251 None:intergenic
GAATGTTTCGCTTTCCGTTA+TGG 0.361499 5.1:-15739399 MS.gene86482:CDS
TTTGATGGATCCGACCTTAC+CGG 0.362230 5.1:+15739192 None:intergenic
ATGAAGTGGTTTGATGTTCC+AGG 0.363641 5.1:-15739120 MS.gene86482:CDS
TATCGGTGAGGAATCTTGAT+TGG 0.366587 5.1:-15738921 MS.gene86482:CDS
GGTGTTAGTTTGACTTCATA+AGG 0.376846 5.1:+15739516 None:intergenic
GTGAAGATAGACGTGTTGAT+AGG 0.382398 5.1:-15738811 MS.gene86482:CDS
GAAATTGGATGTAGGTTGTA+TGG 0.382917 5.1:-15738784 MS.gene86482:CDS
AGGTTTGTTTATGCGGCAAT+TGG 0.386277 5.1:-15738862 MS.gene86482:CDS
AATCATCACTTTCTCAATCA+TGG 0.399507 5.1:+15738978 None:intergenic
AATACAAGTTTAGCTCTGTT+TGG 0.402093 5.1:-15739573 MS.gene86482:CDS
TTGAAACCAGAAAACACGTT+TGG 0.405859 5.1:+15739687 None:intergenic
GTGATGATTAACGTTGAAAC+GGG 0.405944 5.1:-15738964 MS.gene86482:CDS
TTGTATGGAGAAGGTTGTTA+TGG 0.407431 5.1:-15738769 MS.gene86482:CDS
AGTAACAAGACAACCTTTAT+CGG 0.420174 5.1:-15738938 MS.gene86482:CDS
CAACTCGCTTATTGCTTTAG+CGG 0.422022 5.1:-15739667 MS.gene86482:CDS
ATCCAATGCCGAAGATTTCT+GGG 0.424946 5.1:-15738837 MS.gene86482:CDS
TGCTCCACTGACAAAATATT+CGG 0.437857 5.1:+15739030 None:intergenic
AATGGTGACATCCAAACAAT+AGG 0.441307 5.1:-15739492 MS.gene86482:CDS
ACACTTCCACCGTCACTTAA+CGG 0.452248 5.1:-15739888 MS.gene86482:CDS
ATTGTTTGGATGTCACCATT+TGG 0.452917 5.1:+15739495 None:intergenic
AAACCATACGGCACCCTCCT+TGG 0.455270 5.1:+15738592 None:intergenic
TGAAACCAGAAAACACGTTT+GGG 0.456713 5.1:+15739688 None:intergenic
ACCCCAGAAATCTTCGGCAT+TGG 0.459115 5.1:+15738835 None:intergenic
GCTGTAGCACGGGTGTTAAC+CGG 0.463041 5.1:-15739630 MS.gene86482:CDS
TCATGAGGTTGTAATGTTTG+AGG 0.464176 5.1:+15740167 None:intergenic
ATCGGTGAGGAATCTTGATT+GGG 0.469000 5.1:-15738920 MS.gene86482:CDS
ACAAAATATTCGGTCCTACC+AGG 0.473535 5.1:+15739040 None:intergenic
CTTATTGCTTTAGCGGCACG+TGG 0.473769 5.1:-15739660 MS.gene86482:CDS
CGGTGGTTCTCCGGTAAGGT+CGG 0.473793 5.1:-15739202 MS.gene86482:CDS
TGAAGATAGACGTGTTGATA+GGG 0.475674 5.1:-15738810 MS.gene86482:CDS
GTGGAAGGAACTGTGCGTTT+GGG 0.477180 5.1:+15739847 None:intergenic
TTGATGATTTCACATTGTGT+TGG 0.477695 5.1:+15739915 None:intergenic
TCCCTACGACACCGACAACT+TGG 0.483120 5.1:+15738537 None:intergenic
GAAGTCAAACTAACACCAAA+TGG 0.483161 5.1:-15739510 MS.gene86482:CDS
AATTGAGGGATAGGAATTGT+GGG 0.484349 5.1:+15740221 None:intergenic
TTATGTGCATGATGAGAAGA+AGG 0.484903 5.1:-15738683 MS.gene86482:CDS
TAGGGGAGGAAATTGGATGT+AGG 0.487998 5.1:-15738792 MS.gene86482:CDS
AACGCATGGGATGAGGAAGA+TGG 0.489469 5.1:-15739075 MS.gene86482:CDS
AGTGATGATTAACGTTGAAA+CGG 0.493930 5.1:-15738965 MS.gene86482:CDS
GTCGCCGAAGTTTGAGATTG+TGG 0.494185 5.1:-15738629 MS.gene86482:CDS
AAATTGAGGGATAGGAATTG+TGG 0.494586 5.1:+15740220 None:intergenic
GAAGAATAGGTTTGTTTATG+CGG 0.496498 5.1:-15738869 MS.gene86482:CDS
CCCATCTAACGGCATTGGAT+TGG 0.496930 5.1:-15739598 MS.gene86482:CDS
GTGTTGATAGGGGAGGAAAT+TGG 0.498876 5.1:-15738799 MS.gene86482:CDS
GCTATGTTAAATTGAGGGAT+AGG 0.499382 5.1:+15740212 None:intergenic
TGCGATAAACGCATGGGATG+AGG 0.502101 5.1:-15739082 MS.gene86482:CDS
TACAAAATCGAAAACGAAGC+TGG 0.502603 5.1:-15739723 MS.gene86482:CDS
CCAATCCAATGCCGTTAGAT+GGG 0.504833 5.1:+15739598 None:intergenic
CATGCCGTTACAATCTCAAA+CGG 0.508376 5.1:-15739786 MS.gene86482:CDS
CGGATCCATCAAAAGTTTCA+AGG 0.509237 5.1:-15739182 MS.gene86482:CDS
CGGATGCTATGTTAAATTGA+GGG 0.510633 5.1:+15740207 None:intergenic
GGTTTGTTTATGCGGCAATT+GGG 0.511453 5.1:-15738861 MS.gene86482:CDS
TATAACCCATCTAACGGCAT+TGG 0.517337 5.1:-15739603 MS.gene86482:CDS
AACGGTGCTTACATAAGAAA+CGG 0.519576 5.1:-15739870 MS.gene86482:CDS
AAAACACGTTTGGGATAAGT+TGG 0.520569 5.1:+15739697 None:intergenic
ACGGATGCTATGTTAAATTG+AGG 0.520872 5.1:+15740206 None:intergenic
GAAGTTTGAGATTGTGGCGG+AGG 0.521355 5.1:-15738623 MS.gene86482:CDS
TAACACCATTCGAATCAAAA+CGG 0.527089 5.1:+15739349 None:intergenic
GAGGGAGGATGGTGAAGAAG+AGG 0.527711 5.1:-15738725 MS.gene86482:CDS
ACCAAGTTGTCGGTGTCGTA+GGG 0.528287 5.1:-15738538 None:intergenic
AGTGTGTTGAGTATTAGTGC+TGG 0.528619 5.1:+15740041 None:intergenic
TTCACCACCCCAGAAATCTT+CGG 0.528972 5.1:+15738829 None:intergenic
CCATCAAAAGTTTCAAGGAT+CGG 0.531863 5.1:-15739177 MS.gene86482:CDS
ACGCATGGGATGAGGAAGAT+GGG 0.532434 5.1:-15739074 MS.gene86482:CDS
AACCAAGTTGTCGGTGTCGT+AGG 0.534399 5.1:-15738539 None:intergenic
GGACCCTACCATCTCTTTGA+CGG 0.541642 5.1:-15739822 MS.gene86482:CDS
TGAAGTGGTTTGATGTTCCA+GGG 0.544773 5.1:-15739119 MS.gene86482:CDS
GTGTTGGAGGGAGTTCGTCT+AGG 0.545453 5.1:+15739931 None:intergenic
ATGAGAAGAAGGGAGAGTCT+AGG 0.545870 5.1:-15738672 MS.gene86482:CDS
CTGATTCTTAGTGTTTCATG+AGG 0.546673 5.1:+15740152 None:intergenic
GGAGCATGTGATGGAGAGAA+TGG 0.548791 5.1:-15739013 MS.gene86482:CDS
GCGAAATCGTGAAGAAATGA+AGG 0.552082 5.1:+15739291 None:intergenic
GGATGTAGGTTGTATGGAGA+AGG 0.553361 5.1:-15738778 MS.gene86482:CDS
GTTAGATGGGTTATACTGAC+CGG 0.553557 5.1:+15739611 None:intergenic
ATGATTTCACATTGTGTTGG+AGG 0.554808 5.1:+15739918 None:intergenic
ATGCCGTTACAATCTCAAAC+GGG 0.558445 5.1:-15739785 MS.gene86482:CDS
GTGGATCCGTAGCTGTAGCA+CGG 0.561232 5.1:-15739641 MS.gene86482:CDS
GGAGGGAGTTCGTCTAGGAC+TGG 0.561664 5.1:+15739936 None:intergenic
TACATAACGGCTACATAGTG+TGG 0.565392 5.1:+15739758 None:intergenic
GATGGTAGGGTCCACGTGGA+AGG 0.567364 5.1:+15739832 None:intergenic
TTTGTCAGTGGAGCATGTGA+TGG 0.568329 5.1:-15739022 MS.gene86482:CDS
ACATGTCTTGGATCTACAGA+TGG 0.569645 5.1:+15739978 None:intergenic
GTTTGCCGTTAAAATCATAA+CGG 0.574687 5.1:+15739469 None:intergenic
TGCCGTCACCGTCAAAGAGA+TGG 0.574860 5.1:+15739814 None:intergenic
GAGTGACATAACCAAGTTGT+CGG 0.575831 5.1:-15738548 MS.gene86482:CDS
ATGACGAGTCAAAGATGAAG+TGG 0.576979 5.1:-15739134 MS.gene86482:CDS
GAAGATAGACGTGTTGATAG+GGG 0.578405 5.1:-15738809 MS.gene86482:CDS
TATGTGCATGATGAGAAGAA+GGG 0.578787 5.1:-15738682 MS.gene86482:CDS
GTGTGTTGAGTATTAGTGCT+GGG 0.582162 5.1:+15740042 None:intergenic
AACAATCCATGAAAACCATA+CGG 0.587297 5.1:+15738580 None:intergenic
TCCGCCACAATCTCAAACTT+CGG 0.589871 5.1:+15738625 None:intergenic
GATGGTGAAGAAGAGGATGA+TGG 0.592671 5.1:-15738718 MS.gene86482:CDS
CGGAGGTGAAGTTGCCAAGG+AGG 0.593842 5.1:-15738606 MS.gene86482:CDS
TCACCGTCAAAGAGATGGTA+GGG 0.595884 5.1:+15739819 None:intergenic
TACCATCTCTTTGACGGTGA+CGG 0.597655 5.1:-15739816 MS.gene86482:CDS
TGGATCCGTAGCTGTAGCAC+GGG 0.598920 5.1:-15739640 MS.gene86482:CDS
TGATTTCACATTGTGTTGGA+GGG 0.599026 5.1:+15739919 None:intergenic
GATAGACGTGTTGATAGGGG+AGG 0.600147 5.1:-15738806 MS.gene86482:CDS
GGAGGTGAAGTTGCCAAGGA+GGG 0.600925 5.1:-15738605 MS.gene86482:CDS
CCACCGAAAATCATGTCAAG+AGG 0.601141 5.1:+15739219 None:intergenic
CCTAAAGTAGACAGCGACAC+AGG 0.601523 5.1:-15739423 MS.gene86482:CDS
GGGGAAACAGTTACCCTGGT+AGG 0.603915 5.1:-15739054 MS.gene86482:CDS
TTTCCCGTTTGAGATTGTAA+CGG 0.604158 5.1:+15739782 None:intergenic
CGCATGGGATGAGGAAGATG+GGG 0.604378 5.1:-15739073 MS.gene86482:CDS
TTGCCAAGGAGGGTGCCGTA+TGG 0.604907 5.1:-15738595 MS.gene86482:CDS
TAACACCCGTGCTACAGCTA+CGG 0.610630 5.1:+15739635 None:intergenic
CAAAATATTCGGTCCTACCA+GGG 0.611988 5.1:+15739041 None:intergenic
AAGGTCGAATGTGACCATAA+CGG 0.613074 5.1:+15739385 None:intergenic
TGGCGGAGGTGAAGTTGCCA+AGG 0.613374 5.1:-15738609 MS.gene86482:CDS
TCTCAATCATGGCATGAACA+AGG 0.616409 5.1:+15738989 None:intergenic
TTTGCATGCGATAAACGCAT+GGG 0.618674 5.1:-15739088 MS.gene86482:CDS
ACACAATGTGAAATCATCAA+AGG 0.624008 5.1:-15739912 MS.gene86482:CDS
GCATGCAAAATATTAAACCC+TGG 0.625095 5.1:+15739102 None:intergenic
AGATGGGGAAACAGTTACCC+TGG 0.629698 5.1:-15739058 MS.gene86482:CDS
TATGGAGAAGGTTGTTATGG+CGG 0.634655 5.1:-15738766 MS.gene86482:CDS
GTCACCGTCAAAGAGATGGT+AGG 0.640548 5.1:+15739818 None:intergenic
CAAACTCTTGATGAGTATGA+CGG 0.644429 5.1:-15739451 MS.gene86482:CDS
GGTCAGTATAACCCATCTAA+CGG 0.647674 5.1:-15739609 MS.gene86482:CDS
AATGCCGAAGATTTCTGGGG+TGG 0.648764 5.1:-15738833 MS.gene86482:CDS
AGCACTAATACTCAACACAC+TGG 0.664424 5.1:-15740039 MS.gene86482:CDS
GCCGAAGTTTGAGATTGTGG+CGG 0.665485 5.1:-15738626 MS.gene86482:CDS
ATGTAAGCACCGTTAAGTGA+CGG 0.670037 5.1:+15739879 None:intergenic
CAAGACAACCTTTATCGGTG+AGG 0.676636 5.1:-15738933 MS.gene86482:CDS
GACTCGTCATTAGCATAACG+AGG 0.679358 5.1:+15739147 None:intergenic
AAGAGATGGTAGGGTCCACG+TGG 0.686982 5.1:+15739828 None:intergenic
TGAGGGATAGGAATTGTGGG+TGG 0.693205 5.1:+15740224 None:intergenic
TCCAATGCCGAAGATTTCTG+GGG 0.707117 5.1:-15738836 MS.gene86482:CDS
TGATGATTAACGTTGAAACG+GGG 0.708514 5.1:-15738963 MS.gene86482:CDS
AACGCACAGTTCCTTCCACG+TGG 0.711755 5.1:-15739843 MS.gene86482:CDS
TAAGCACCGTTAAGTGACGG+TGG 0.714275 5.1:+15739882 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGTCGTTAATATTATTAT+GGG + chr5.1:15738555-15738574 None:intergenic 15.0%
!! TTTAGTCGTTAATATTATTA+TGG + chr5.1:15738556-15738575 None:intergenic 15.0%
!! GTTAATATTATTATGGGTTT+GGG + chr5.1:15738549-15738568 None:intergenic 20.0%
!!! AGTGATTAACAATGATTTTT+TGG - chr5.1:15739907-15739926 MS.gene86482:CDS 20.0%
!!! CACAACATATTTTTTAGTAA+TGG + chr5.1:15739537-15739556 None:intergenic 20.0%
!!! GTGATTAACAATGATTTTTT+GGG - chr5.1:15739908-15739927 MS.gene86482:CDS 20.0%
!!! TGATTAACAATGATTTTTTG+GGG - chr5.1:15739909-15739928 MS.gene86482:CDS 20.0%
! AAACGGAAATAGGTTAAAAA+AGG + chr5.1:15739440-15739459 None:intergenic 25.0%
! CGTTAATATTATTATGGGTT+TGG + chr5.1:15738550-15738569 None:intergenic 25.0%
!! ACTTGTAGGTTTTTACATAA+CGG + chr5.1:15739061-15739080 None:intergenic 25.0%
!!! AAGAGTTTTTGTTTTTGTAG+GGG + chr5.1:15738679-15738698 None:intergenic 25.0%
!!! AGAAGAGTTTTTGTTTTTGT+AGG + chr5.1:15738681-15738700 None:intergenic 25.0%
!!! GAAGAGTTTTTGTTTTTGTA+GGG + chr5.1:15738680-15738699 None:intergenic 25.0%
!!! TAATGTTTGAGGTTTTTCTT+CGG + chr5.1:15738628-15738647 None:intergenic 25.0%
AACAATCCATGAAAACCATA+CGG + chr5.1:15740226-15740245 None:intergenic 30.0%
AATCATCACTTTCTCAATCA+TGG + chr5.1:15739828-15739847 None:intergenic 30.0%
ACACAATGTGAAATCATCAA+AGG - chr5.1:15738891-15738910 MS.gene86482:CDS 30.0%
AGTAACAAGACAACCTTTAT+CGG - chr5.1:15739865-15739884 MS.gene86482:CDS 30.0%
AGTGATGATTAACGTTGAAA+CGG - chr5.1:15739838-15739857 MS.gene86482:CDS 30.0%
ATTCGAATCAAAACGGAAAT+AGG + chr5.1:15739450-15739469 None:intergenic 30.0%
ATTCTCCTAAAGCAAAAAGA+CGG + chr5.1:15739259-15739278 None:intergenic 30.0%
GTTTGCCGTTAAAATCATAA+CGG + chr5.1:15739337-15739356 None:intergenic 30.0%
TAACACCATTCGAATCAAAA+CGG + chr5.1:15739457-15739476 None:intergenic 30.0%
! AAGAAATGAAGGTCTTTTCA+TGG + chr5.1:15739504-15739523 None:intergenic 30.0%
! AATCCTCTTGACATGATTTT+CGG - chr5.1:15739581-15739600 MS.gene86482:CDS 30.0%
! ATAGGCCGTTATGATTTTAA+CGG - chr5.1:15739329-15739348 MS.gene86482:CDS 30.0%
! GAAGAATAGGTTTGTTTATG+CGG - chr5.1:15739934-15739953 MS.gene86482:CDS 30.0%
! GTTTTCGATTTTGTACTTGT+AGG + chr5.1:15739075-15739094 None:intergenic 30.0%
! TTGATGATTTCACATTGTGT+TGG + chr5.1:15738891-15738910 None:intergenic 30.0%
!! AATACAAGTTTAGCTCTGTT+TGG - chr5.1:15739230-15739249 MS.gene86482:CDS 30.0%
!! GTCTTTTGTTTGTGTTTTTG+AGG + chr5.1:15738725-15738744 None:intergenic 30.0%
!! TTTTCATGGATTGTTTGTGA+AGG - chr5.1:15740231-15740250 MS.gene86482:CDS 30.0%
!!! ATTTTTTGGGGAAGAAGAAT+AGG - chr5.1:15739921-15739940 MS.gene86482:CDS 30.0%
!!! GTTTGTGTTTTTGAGGTTTT+GGG + chr5.1:15738718-15738737 None:intergenic 30.0%
!!! TATTTCCGTTTTGATTCGAA+TGG - chr5.1:15739449-15739468 MS.gene86482:CDS 30.0%
!!! TGTTTGTGTTTTTGAGGTTT+TGG + chr5.1:15738719-15738738 None:intergenic 30.0%
!!! TTTTGAGACAAAACATGTCT+TGG + chr5.1:15738840-15738859 None:intergenic 30.0%
AAATTGAGGGATAGGAATTG+TGG + chr5.1:15738586-15738605 None:intergenic 35.0%
AACGGTGCTTACATAAGAAA+CGG - chr5.1:15738933-15738952 MS.gene86482:CDS 35.0%
AATCATAACGGCCTATTGTT+TGG + chr5.1:15739325-15739344 None:intergenic 35.0%
AATGGTGACATCCAAACAAT+AGG - chr5.1:15739311-15739330 MS.gene86482:CDS 35.0%
AATTGAGGGATAGGAATTGT+GGG + chr5.1:15738585-15738604 None:intergenic 35.0%
ACGGATGCTATGTTAAATTG+AGG + chr5.1:15738600-15738619 None:intergenic 35.0%
ATGATTTCACATTGTGTTGG+AGG + chr5.1:15738888-15738907 None:intergenic 35.0%
ATTGTTTGGATGTCACCATT+TGG + chr5.1:15739311-15739330 None:intergenic 35.0%
CAAACTCTTGATGAGTATGA+CGG - chr5.1:15739352-15739371 MS.gene86482:CDS 35.0%
CCATCAAAAGTTTCAAGGAT+CGG - chr5.1:15739626-15739645 MS.gene86482:CDS 35.0%
CGGATGCTATGTTAAATTGA+GGG + chr5.1:15738599-15738618 None:intergenic 35.0%
CTGATTCTTAGTGTTTCATG+AGG + chr5.1:15738654-15738673 None:intergenic 35.0%
GAAATTGGATGTAGGTTGTA+TGG - chr5.1:15740019-15740038 MS.gene86482:CDS 35.0%
GAAGTCAAACTAACACCAAA+TGG - chr5.1:15739293-15739312 MS.gene86482:CDS 35.0%
GCATGCAAAATATTAAACCC+TGG + chr5.1:15739704-15739723 None:intergenic 35.0%
GCTATGTTAAATTGAGGGAT+AGG + chr5.1:15738594-15738613 None:intergenic 35.0%
GTGATGATTAACGTTGAAAC+GGG - chr5.1:15739839-15739858 MS.gene86482:CDS 35.0%
TACAAAATCGAAAACGAAGC+TGG - chr5.1:15739080-15739099 MS.gene86482:CDS 35.0%
TATGTGCATGATGAGAAGAA+GGG - chr5.1:15740121-15740140 MS.gene86482:CDS 35.0%
TCATGAGGTTGTAATGTTTG+AGG + chr5.1:15738639-15738658 None:intergenic 35.0%
TGAAACCAGAAAACACGTTT+GGG + chr5.1:15739118-15739137 None:intergenic 35.0%
TGATGATTAACGTTGAAACG+GGG - chr5.1:15739840-15739859 MS.gene86482:CDS 35.0%
TGATTTCACATTGTGTTGGA+GGG + chr5.1:15738887-15738906 None:intergenic 35.0%
TGCTCCACTGACAAAATATT+CGG + chr5.1:15739776-15739795 None:intergenic 35.0%
TTATGTGCATGATGAGAAGA+AGG - chr5.1:15740120-15740139 MS.gene86482:CDS 35.0%
TTGAAACCAGAAAACACGTT+TGG + chr5.1:15739119-15739138 None:intergenic 35.0%
TTGTATGGAGAAGGTTGTTA+TGG - chr5.1:15740034-15740053 MS.gene86482:CDS 35.0%
! AAAACACGTTTGGGATAAGT+TGG + chr5.1:15739109-15739128 None:intergenic 35.0%
! GGTGTTAGTTTGACTTCATA+AGG + chr5.1:15739290-15739309 None:intergenic 35.0%
! TGAAGATAGACGTGTTGATA+GGG - chr5.1:15739993-15740012 MS.gene86482:CDS 35.0%
! TTTCCCGTTTGAGATTGTAA+CGG + chr5.1:15739024-15739043 None:intergenic 35.0%
!! TTTTATTGGTGGGTCTATGA+AGG + chr5.1:15738805-15738824 None:intergenic 35.0%
!!! CTACAGATGGTTTTATTGGT+GGG + chr5.1:15738815-15738834 None:intergenic 35.0%
!!! GGATCTACAGATGGTTTTAT+TGG + chr5.1:15738819-15738838 None:intergenic 35.0%
!!! TCTACAGATGGTTTTATTGG+TGG + chr5.1:15738816-15738835 None:intergenic 35.0%
AAGGTCGAATGTGACCATAA+CGG + chr5.1:15739421-15739440 None:intergenic 40.0%
AATCCAATGCCGAAGATTTC+TGG - chr5.1:15739965-15739984 MS.gene86482:CDS 40.0%
ACAAAATATTCGGTCCTACC+AGG + chr5.1:15739766-15739785 None:intergenic 40.0%
ACATGTCTTGGATCTACAGA+TGG + chr5.1:15738828-15738847 None:intergenic 40.0%
AGCACTAATACTCAACACAC+TGG - chr5.1:15738764-15738783 MS.gene86482:CDS 40.0%
AGTGTGTTGAGTATTAGTGC+TGG + chr5.1:15738765-15738784 None:intergenic 40.0%
ATCCAATGCCGAAGATTTCT+GGG - chr5.1:15739966-15739985 MS.gene86482:CDS 40.0%
ATCGGTGAGGAATCTTGATT+GGG - chr5.1:15739883-15739902 MS.gene86482:CDS 40.0%
ATGAAGTGGTTTGATGTTCC+AGG - chr5.1:15739683-15739702 MS.gene86482:CDS 40.0%
ATGACGAGTCAAAGATGAAG+TGG - chr5.1:15739669-15739688 MS.gene86482:CDS 40.0%
ATGCCGTTACAATCTCAAAC+GGG - chr5.1:15739018-15739037 MS.gene86482:CDS 40.0%
CAAAATATTCGGTCCTACCA+GGG + chr5.1:15739765-15739784 None:intergenic 40.0%
CAACTCGCTTATTGCTTTAG+CGG - chr5.1:15739136-15739155 MS.gene86482:CDS 40.0%
CATGCCGTTACAATCTCAAA+CGG - chr5.1:15739017-15739036 MS.gene86482:CDS 40.0%
CGGATCCATCAAAAGTTTCA+AGG - chr5.1:15739621-15739640 MS.gene86482:CDS 40.0%
GAATGTTTCGCTTTCCGTTA+TGG - chr5.1:15739404-15739423 MS.gene86482:CDS 40.0%
GAGTGACATAACCAAGTTGT+CGG - chr5.1:15740255-15740274 MS.gene86482:CDS 40.0%
GCGAAATCGTGAAGAAATGA+AGG + chr5.1:15739515-15739534 None:intergenic 40.0%
GGTCAGTATAACCCATCTAA+CGG - chr5.1:15739194-15739213 MS.gene86482:CDS 40.0%
GTGTGTTGAGTATTAGTGCT+GGG + chr5.1:15738764-15738783 None:intergenic 40.0%
TACATAACGGCTACATAGTG+TGG + chr5.1:15739048-15739067 None:intergenic 40.0%
TATAACCCATCTAACGGCAT+TGG - chr5.1:15739200-15739219 MS.gene86482:CDS 40.0%
TATCGGTGAGGAATCTTGAT+TGG - chr5.1:15739882-15739901 MS.gene86482:CDS 40.0%
TATGGAGAAGGTTGTTATGG+CGG - chr5.1:15740037-15740056 MS.gene86482:CDS 40.0%
TCAAGATTCCTCACCGATAA+AGG + chr5.1:15739881-15739900 None:intergenic 40.0%
TCTCAATCATGGCATGAACA+AGG + chr5.1:15739817-15739836 None:intergenic 40.0%
TGAAGTGGTTTGATGTTCCA+GGG - chr5.1:15739684-15739703 MS.gene86482:CDS 40.0%
TTTGCATGCGATAAACGCAT+GGG - chr5.1:15739715-15739734 MS.gene86482:CDS 40.0%
! AGGACCGAATATTTTGTCAG+TGG - chr5.1:15739769-15739788 MS.gene86482:CDS 40.0%
! AGGTTTGTTTATGCGGCAAT+TGG - chr5.1:15739941-15739960 MS.gene86482:CDS 40.0%
! ATGTAAGCACCGTTAAGTGA+CGG + chr5.1:15738927-15738946 None:intergenic 40.0%
! CCGATCCTTGAAACTTTTGA+TGG + chr5.1:15739629-15739648 None:intergenic 40.0%
! CTTATCCCAAACGTGTTTTC+TGG - chr5.1:15739110-15739129 MS.gene86482:CDS 40.0%
! GAAGATAGACGTGTTGATAG+GGG - chr5.1:15739994-15740013 MS.gene86482:CDS 40.0%
! GGTAACCGTCTTTTTGCTTT+AGG - chr5.1:15739251-15739270 MS.gene86482:CDS 40.0%
! GGTCTTTTCATGGAGAATAC+TGG + chr5.1:15739494-15739513 None:intergenic 40.0%
! GGTTTGTTTATGCGGCAATT+GGG - chr5.1:15739942-15739961 MS.gene86482:CDS 40.0%
! GTGAAGATAGACGTGTTGAT+AGG - chr5.1:15739992-15740011 MS.gene86482:CDS 40.0%
! TTTTGCATGCGATAAACGCA+TGG - chr5.1:15739714-15739733 MS.gene86482:CDS 40.0%
!! AGGTTTTTCTTCGGTTCTGA+CGG + chr5.1:15738619-15738638 None:intergenic 40.0%
!! GTTAGATGGGTTATACTGAC+CGG + chr5.1:15739195-15739214 None:intergenic 40.0%
!!! AGAGTCTAGGTTTTTGGTGA+TGG - chr5.1:15740144-15740163 MS.gene86482:CDS 40.0%
!!! TGTGTTTTTGAGGTTTTGGG+TGG + chr5.1:15738715-15738734 None:intergenic 40.0%
ACACTTCCACCGTCACTTAA+CGG - chr5.1:15738915-15738934 MS.gene86482:CDS 45.0%
ACCAATCCAATGCCGTTAGA+TGG + chr5.1:15739209-15739228 None:intergenic 45.0%
ATGAGAAGAAGGGAGAGTCT+AGG - chr5.1:15740131-15740150 MS.gene86482:CDS 45.0%
CAAGACAACCTTTATCGGTG+AGG - chr5.1:15739870-15739889 MS.gene86482:CDS 45.0%
CCAATCCAATGCCGTTAGAT+GGG + chr5.1:15739208-15739227 None:intergenic 45.0%
CCACCGAAAATCATGTCAAG+AGG + chr5.1:15739587-15739606 None:intergenic 45.0%
GACTCGTCATTAGCATAACG+AGG + chr5.1:15739659-15739678 None:intergenic 45.0%
GATGGTGAAGAAGAGGATGA+TGG - chr5.1:15740085-15740104 MS.gene86482:CDS 45.0%
GGATGTAGGTTGTATGGAGA+AGG - chr5.1:15740025-15740044 MS.gene86482:CDS 45.0%
TACCATCTCTTTGACGGTGA+CGG - chr5.1:15738987-15739006 MS.gene86482:CDS 45.0%
TAGGGGAGGAAATTGGATGT+AGG - chr5.1:15740011-15740030 MS.gene86482:CDS 45.0%
TCACCGTCAAAGAGATGGTA+GGG + chr5.1:15738987-15739006 None:intergenic 45.0%
TCCAATGCCGAAGATTTCTG+GGG - chr5.1:15739967-15739986 MS.gene86482:CDS 45.0%
TCCGCCACAATCTCAAACTT+CGG + chr5.1:15740181-15740200 None:intergenic 45.0%
TTCACCACCCCAGAAATCTT+CGG + chr5.1:15739977-15739996 None:intergenic 45.0%
TTTGTCAGTGGAGCATGTGA+TGG - chr5.1:15739781-15739800 MS.gene86482:CDS 45.0%
! CATGATTTTCGGTGGTTCTC+CGG - chr5.1:15739592-15739611 MS.gene86482:CDS 45.0%
! CCTCTTGACATGATTTTCGG+TGG - chr5.1:15739584-15739603 MS.gene86482:CDS 45.0%
! GAAGGGAGAGTCTAGGTTTT+TGG - chr5.1:15740138-15740157 MS.gene86482:CDS 45.0%
! GTGTTGATAGGGGAGGAAAT+TGG - chr5.1:15740004-15740023 MS.gene86482:CDS 45.0%
! TTTGATGGATCCGACCTTAC+CGG + chr5.1:15739614-15739633 None:intergenic 45.0%
!!! TTTGAGGTTTTGGGTGGTGA+TGG + chr5.1:15738709-15738728 None:intergenic 45.0%
AACGCATGGGATGAGGAAGA+TGG - chr5.1:15739728-15739747 MS.gene86482:CDS 50.0%
ACCCCAGAAATCTTCGGCAT+TGG + chr5.1:15739971-15739990 None:intergenic 50.0%
ACGCATGGGATGAGGAAGAT+GGG - chr5.1:15739729-15739748 MS.gene86482:CDS 50.0%
AGATGGGGAAACAGTTACCC+TGG - chr5.1:15739745-15739764 MS.gene86482:CDS 50.0%
CCTAAAGTAGACAGCGACAC+AGG - chr5.1:15739380-15739399 MS.gene86482:CDS 50.0%
CTTATTGCTTTAGCGGCACG+TGG - chr5.1:15739143-15739162 MS.gene86482:CDS 50.0%
GGACCCTACCATCTCTTTGA+CGG - chr5.1:15738981-15739000 MS.gene86482:CDS 50.0%
GTCACCGTCAAAGAGATGGT+AGG + chr5.1:15738988-15739007 None:intergenic 50.0%
GTGGAAGGAACTGTGCGTTT+GGG + chr5.1:15738959-15738978 None:intergenic 50.0%
TAACACCCGTGCTACAGCTA+CGG + chr5.1:15739171-15739190 None:intergenic 50.0%
TGAGGGATAGGAATTGTGGG+TGG + chr5.1:15738582-15738601 None:intergenic 50.0%
TGCGATAAACGCATGGGATG+AGG - chr5.1:15739721-15739740 MS.gene86482:CDS 50.0%
! AATGCCGAAGATTTCTGGGG+TGG - chr5.1:15739970-15739989 MS.gene86482:CDS 50.0%
! CCCATCTAACGGCATTGGAT+TGG - chr5.1:15739205-15739224 MS.gene86482:CDS 50.0%
! CCTGTGTCGCTGTCTACTTT+AGG + chr5.1:15739383-15739402 None:intergenic 50.0%
! GAAGTTTGAGATTGTGGCGG+AGG - chr5.1:15740180-15740199 MS.gene86482:CDS 50.0%
! GATAGACGTGTTGATAGGGG+AGG - chr5.1:15739997-15740016 MS.gene86482:CDS 50.0%
! GCCGAAGTTTGAGATTGTGG+CGG - chr5.1:15740177-15740196 MS.gene86482:CDS 50.0%
! GGAGCATGTGATGGAGAGAA+TGG - chr5.1:15739790-15739809 MS.gene86482:CDS 50.0%
! GTCGCCGAAGTTTGAGATTG+TGG - chr5.1:15740174-15740193 MS.gene86482:CDS 50.0%
! TAAGCACCGTTAAGTGACGG+TGG + chr5.1:15738924-15738943 None:intergenic 50.0%
! TTTTCGGTGGTTCTCCGGTA+AGG - chr5.1:15739597-15739616 MS.gene86482:CDS 50.0%
!!! AGGGTGCCGTATGGTTTTCA+TGG - chr5.1:15740217-15740236 MS.gene86482:CDS 50.0%
AAACCATACGGCACCCTCCT+TGG + chr5.1:15740214-15740233 None:intergenic 55.0%
AACGCACAGTTCCTTCCACG+TGG - chr5.1:15738960-15738979 MS.gene86482:CDS 55.0%
AAGAGATGGTAGGGTCCACG+TGG + chr5.1:15738978-15738997 None:intergenic 55.0%
CGCATGGGATGAGGAAGATG+GGG - chr5.1:15739730-15739749 MS.gene86482:CDS 55.0%
CGTGGAAGGAACTGTGCGTT+TGG + chr5.1:15738960-15738979 None:intergenic 55.0%
GAGGGAGGATGGTGAAGAAG+AGG - chr5.1:15740078-15740097 MS.gene86482:CDS 55.0%
GCTGTAGCACGGGTGTTAAC+CGG - chr5.1:15739173-15739192 MS.gene86482:CDS 55.0%
GGAGGTGAAGTTGCCAAGGA+GGG - chr5.1:15740198-15740217 MS.gene86482:CDS 55.0%
GGGGAAACAGTTACCCTGGT+AGG - chr5.1:15739749-15739768 MS.gene86482:CDS 55.0%
GTGGATCCGTAGCTGTAGCA+CGG - chr5.1:15739162-15739181 MS.gene86482:CDS 55.0%
GTGTTGGAGGGAGTTCGTCT+AGG + chr5.1:15738875-15738894 None:intergenic 55.0%
TCCTCCCTCGCCACGAAAAA+CGG + chr5.1:15740067-15740086 None:intergenic 55.0%
TGCCGTCACCGTCAAAGAGA+TGG + chr5.1:15738992-15739011 None:intergenic 55.0%
TGGATCCGTAGCTGTAGCAC+GGG - chr5.1:15739163-15739182 MS.gene86482:CDS 55.0%
! TTTTTCGTGGCGAGGGAGGA+TGG - chr5.1:15740067-15740086 MS.gene86482:CDS 55.0%
!!! GAGGTTTTGGGTGGTGATGG+TGG + chr5.1:15738706-15738725 None:intergenic 55.0%
CGGAGGTGAAGTTGCCAAGG+AGG - chr5.1:15740197-15740216 MS.gene86482:CDS 60.0%
CGGTGGTTCTCCGGTAAGGT+CGG - chr5.1:15739601-15739620 MS.gene86482:CDS 60.0%
GATGGTAGGGTCCACGTGGA+AGG + chr5.1:15738974-15738993 None:intergenic 60.0%
TGGCGGAGGTGAAGTTGCCA+AGG - chr5.1:15740194-15740213 MS.gene86482:CDS 60.0%
! GGAGGGAGTTCGTCTAGGAC+TGG + chr5.1:15738870-15738889 None:intergenic 60.0%
!! TTGCCAAGGAGGGTGCCGTA+TGG - chr5.1:15740208-15740227 MS.gene86482:CDS 60.0%
!!! CGAGCCGTTTTTCGTGGCGA+GGG - chr5.1:15740060-15740079 MS.gene86482:CDS 60.0%
!!! GCCGTTTTTCGTGGCGAGGG+AGG - chr5.1:15740063-15740082 MS.gene86482:CDS 65.0%
!!! GCGAGCCGTTTTTCGTGGCG+AGG - chr5.1:15740059-15740078 MS.gene86482:CDS 65.0%
!!! TGGCGGCGAGCCGTTTTTCG+TGG - chr5.1:15740054-15740073 MS.gene86482:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 15738540 15740285 15738540 ID=MS.gene86482
chr5.1 mRNA 15738540 15740285 15738540 ID=MS.gene86482.t1;Parent=MS.gene86482
chr5.1 exon 15738540 15740285 15738540 ID=MS.gene86482.t1.exon1;Parent=MS.gene86482.t1
chr5.1 CDS 15738540 15740285 15738540 ID=cds.MS.gene86482.t1;Parent=MS.gene86482.t1
Gene Sequence

>MS.gene86482

ATGGTTCCCAAACCCATAATAATATTAACGACTAAACAACCACCCACAATTCCTATCCCTCAATTTAACATAGCATCCGTCAGAACCGAAGAAAAACCTCAAACATTACAACCTCATGAAACACTAAGAATCAGTACCCCTACAAAAACAAAAACTCTTCTCACCACCATCACCACCCAAAACCTCAAAAACACAAACAAAAGACTACAAACATCGTCAATCCCAGCACTAATACTCAACACACTGGACGACATTATCAACACCTTCATAGACCCACCAATAAAACCATCTGTAGATCCAAGACATGTTTTGTCTCAAAACTTTGCACCAGTCCTAGACGAACTCCCTCCAACACAATGTGAAATCATCAAAGGCACACTTCCACCGTCACTTAACGGTGCTTACATAAGAAACGGCCCAAACGCACAGTTCCTTCCACGTGGACCCTACCATCTCTTTGACGGTGACGGCATGCTTCATGCCGTTACAATCTCAAACGGGAAAGCCACACTATGTAGCCGTTATGTAAAAACCTACAAGTACAAAATCGAAAACGAAGCTGGTCACCAACTTATCCCAAACGTGTTTTCTGGTTTCAACTCGCTTATTGCTTTAGCGGCACGTGGATCCGTAGCTGTAGCACGGGTGTTAACCGGTCAGTATAACCCATCTAACGGCATTGGATTGGTCAATACAAGTTTAGCTCTGTTTGGTAACCGTCTTTTTGCTTTAGGAGAATCAGATCTTCCTTATGAAGTCAAACTAACACCAAATGGTGACATCCAAACAATAGGCCGTTATGATTTTAACGGCAAACTCTTGATGAGTATGACGGCGCATCCTAAAGTAGACAGCGACACAGGTGAATGTTTCGCTTTCCGTTATGGTCACATTCGACCTTTTTTAACCTATTTCCGTTTTGATTCGAATGGTGTTAAACATGATGATGTTCCAGTATTCTCCATGAAAAGACCTTCATTTCTTCACGATTTCGCCATTACTAAAAAATATGTTGTGTTCGCTGATATACAGCTTGAAATGAATCCTCTTGACATGATTTTCGGTGGTTCTCCGGTAAGGTCGGATCCATCAAAAGTTTCAAGGATCGGAATTTTACCTCGTTATGCTAATGACGAGTCAAAGATGAAGTGGTTTGATGTTCCAGGGTTTAATATTTTGCATGCGATAAACGCATGGGATGAGGAAGATGGGGAAACAGTTACCCTGGTAGGACCGAATATTTTGTCAGTGGAGCATGTGATGGAGAGAATGGACCTTGTTCATGCCATGATTGAGAAAGTGATGATTAACGTTGAAACGGGGATAGTAACAAGACAACCTTTATCGGTGAGGAATCTTGATTGGGCAGTGATTAACAATGATTTTTTGGGGAAGAAGAATAGGTTTGTTTATGCGGCAATTGGGAATCCAATGCCGAAGATTTCTGGGGTGGTGAAGATAGACGTGTTGATAGGGGAGGAAATTGGATGTAGGTTGTATGGAGAAGGTTGTTATGGCGGCGAGCCGTTTTTCGTGGCGAGGGAGGATGGTGAAGAAGAGGATGATGGTTATTTAGTGAGTTATGTGCATGATGAGAAGAAGGGAGAGTCTAGGTTTTTGGTGATGGATGCGAAGTCGCCGAAGTTTGAGATTGTGGCGGAGGTGAAGTTGCCAAGGAGGGTGCCGTATGGTTTTCATGGATTGTTTGTGAAGGAGAGTGACATAACCAAGTTGTCGGTGTCGTAG

Protein sequence

>MS.gene86482.t1

MVPKPIIILTTKQPPTIPIPQFNIASVRTEEKPQTLQPHETLRISTPTKTKTLLTTITTQNLKNTNKRLQTSSIPALILNTLDDIINTFIDPPIKPSVDPRHVLSQNFAPVLDELPPTQCEIIKGTLPPSLNGAYIRNGPNAQFLPRGPYHLFDGDGMLHAVTISNGKATLCSRYVKTYKYKIENEAGHQLIPNVFSGFNSLIALAARGSVAVARVLTGQYNPSNGIGLVNTSLALFGNRLFALGESDLPYEVKLTPNGDIQTIGRYDFNGKLLMSMTAHPKVDSDTGECFAFRYGHIRPFLTYFRFDSNGVKHDDVPVFSMKRPSFLHDFAITKKYVVFADIQLEMNPLDMIFGGSPVRSDPSKVSRIGILPRYANDESKMKWFDVPGFNILHAINAWDEEDGETVTLVGPNILSVEHVMERMDLVHAMIEKVMINVETGIVTRQPLSVRNLDWAVINNDFLGKKNRFVYAAIGNPMPKISGVVKIDVLIGEEIGCRLYGEGCYGGEPFFVAREDGEEEDDGYLVSYVHDEKKGESRFLVMDAKSPKFEIVAEVKLPRRVPYGFHGLFVKESDITKLSVS