Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86852.t1 | XP_024631911.1 | 81.7 | 301 | 45 | 4 | 64 | 354 | 283 | 583 | 5.70E-111 | 411 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86852.t1 | A0A3Q7XGP6 | 69.9 | 209 | 54 | 4 | 96 | 302 | 45 | 246 | 1.2e-70 | 276.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053592 | MS.gene86852 | 0.816784 | 4.63E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86852.t1 | MTR_0125s0060 | 90.769 | 130 | 12 | 0 | 225 | 354 | 1 | 130 | 2.09e-78 | 236 |
| MS.gene86852.t1 | MTR_2g035110 | 80.741 | 135 | 26 | 0 | 225 | 359 | 1 | 135 | 1.60e-69 | 214 |
| MS.gene86852.t1 | MTR_8g066845 | 58.491 | 106 | 24 | 3 | 255 | 359 | 1 | 87 | 6.80e-25 | 97.1 |
| MS.gene86852.t1 | MTR_4g012560 | 81.481 | 54 | 5 | 1 | 272 | 325 | 24 | 72 | 4.45e-17 | 75.9 |
| MS.gene86852.t1 | MTR_4g029740 | 40.659 | 91 | 52 | 2 | 98 | 187 | 112 | 201 | 4.52e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 71 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCCATCTGGTTTCCCTTT+TGG | 0.170423 | 6.2:-52573364 | None:intergenic |
| TCTTTGTATGAAGGGATTTA+AGG | 0.183119 | 6.2:+52572407 | MS.gene86852:CDS |
| TGAAACAGTTGGAGGTTAAA+TGG | 0.204653 | 6.2:+52573092 | MS.gene86852:CDS |
| AATTGACAATGATATTTATA+TGG | 0.247121 | 6.2:+52573569 | MS.gene86852:CDS |
| TGAATTGAAGTGTTCATATT+AGG | 0.290831 | 6.2:-52573834 | None:intergenic |
| TCTATGCACTCTAGCAGATA+TGG | 0.296666 | 6.2:-52573200 | None:intergenic |
| TTAAGGAGGATTACTATTAC+TGG | 0.299244 | 6.2:+52572424 | MS.gene86852:CDS |
| TCCATCCACTTGCGATGTTC+AGG | 0.310535 | 6.2:-52572210 | None:intergenic |
| CCATTATCACCTTCTCCTTC+CGG | 0.338322 | 6.2:-52573858 | None:intergenic |
| AAGGGGCGCATGTTTGGATT+AGG | 0.361637 | 6.2:+52573615 | MS.gene86852:CDS |
| TTCTACCGATGTAGATTCTT+CGG | 0.370531 | 6.2:+52573686 | MS.gene86852:CDS |
| CTATGACTAATAAACAAAAT+AGG | 0.370881 | 6.2:+52573140 | MS.gene86852:CDS |
| AACAAGAAGGGGCGCATGTT+TGG | 0.378727 | 6.2:+52573609 | MS.gene86852:CDS |
| AGCAGTTAGTGCTTCAATCT+TGG | 0.379247 | 6.2:-52573730 | None:intergenic |
| GACCACTACGCACCTTGAAC+AGG | 0.382747 | 6.2:-52573039 | None:intergenic |
| GATATTTATATGGAAATTGT+TGG | 0.391812 | 6.2:+52573579 | MS.gene86852:CDS |
| GTTTCTCAAACGTTTGAGTT+TGG | 0.397323 | 6.2:-52573503 | None:intergenic |
| GAGCGCTTGGAGCAAATGAT+TGG | 0.408396 | 6.2:+52573801 | MS.gene86852:CDS |
| ATCGCAAGTGGATGGATAAT+AGG | 0.414225 | 6.2:+52572217 | MS.gene86852:CDS |
| GACAAACTTCATAGACCAAA+AGG | 0.414225 | 6.2:+52573349 | MS.gene86852:CDS |
| GAAACAGTTGGAGGTTAAAT+GGG | 0.415071 | 6.2:+52573093 | MS.gene86852:CDS |
| CCGGAAGGAGAAGGTGATAA+TGG | 0.416904 | 6.2:+52573858 | MS.gene86852:CDS |
| GTGCGTAGTGGTCATGATAA+AGG | 0.417897 | 6.2:+52573049 | MS.gene86852:CDS |
| TCTGTAACTCTACTATTATC+AGG | 0.438683 | 6.2:-52572246 | None:intergenic |
| CAAAATAGGCAGTCTAAAGT+TGG | 0.454140 | 6.2:+52573154 | MS.gene86852:CDS |
| CATGAAACATCTTTGTATGA+AGG | 0.458685 | 6.2:+52572398 | MS.gene86852:CDS |
| GTTTCATTAAACCACCCATC+TGG | 0.467331 | 6.2:-52573376 | None:intergenic |
| TTAGAGAGTGGAATTGGATA+GGG | 0.471643 | 6.2:+52573303 | MS.gene86852:intron |
| TTTAGAGAGTGGAATTGGAT+AGG | 0.476342 | 6.2:+52573302 | MS.gene86852:intron |
| AGAAACGCTAAAACTGAAGA+TGG | 0.499466 | 6.2:+52573779 | MS.gene86852:CDS |
| AAAACTGAAGATGGAGCGCT+TGG | 0.500382 | 6.2:+52573788 | MS.gene86852:CDS |
| ATGAAACATCTTTGTATGAA+GGG | 0.500891 | 6.2:+52572399 | MS.gene86852:CDS |
| TTAAATGGGAAGAAGAGAAA+TGG | 0.501205 | 6.2:+52573107 | MS.gene86852:CDS |
| TGTTGGAGGCATTAACAAGA+AGG | 0.515610 | 6.2:+52573596 | MS.gene86852:CDS |
| ATTTATATGGAAATTGTTGG+AGG | 0.522832 | 6.2:+52573582 | MS.gene86852:CDS |
| TCATTGTCAATTTCTTCAGT+AGG | 0.525205 | 6.2:-52573558 | None:intergenic |
| AGCGCTTGGAGCAAATGATT+GGG | 0.526657 | 6.2:+52573802 | MS.gene86852:CDS |
| TATGAACACTTCAATTCAGC+CGG | 0.533653 | 6.2:+52573839 | MS.gene86852:CDS |
| CCACGGTGAACAAAGGCCTT+CGG | 0.536881 | 6.2:+52572452 | MS.gene86852:CDS |
| TCCTGAACATCGCAAGTGGA+TGG | 0.540917 | 6.2:+52572209 | MS.gene86852:CDS |
| GTGGTCATGATAAAGGTGAA+TGG | 0.542038 | 6.2:+52573056 | MS.gene86852:CDS |
| TCAATTCAGCCGGAAGGAGA+AGG | 0.553755 | 6.2:+52573849 | MS.gene86852:CDS |
| GTTGGAGGCATTAACAAGAA+GGG | 0.555037 | 6.2:+52573597 | MS.gene86852:CDS |
| ACAAACTTCATAGACCAAAA+GGG | 0.556595 | 6.2:+52573350 | MS.gene86852:CDS |
| TCTACATCGGTAGAAATTGA+AGG | 0.559331 | 6.2:-52573678 | None:intergenic |
| TTGTATGAAGGGATTTAAGG+AGG | 0.560562 | 6.2:+52572410 | MS.gene86852:CDS |
| TGGTGACAACTTGAAACAGT+TGG | 0.561040 | 6.2:+52573081 | MS.gene86852:CDS |
| AGACCAAAAGGGAAACCAGA+TGG | 0.568337 | 6.2:+52573361 | MS.gene86852:CDS |
| GACCAAAAGGGAAACCAGAT+GGG | 0.568542 | 6.2:+52573362 | MS.gene86852:CDS |
| GTTGGACACAATGTGCATAG+TGG | 0.577145 | 6.2:+52573172 | MS.gene86852:CDS |
| TCGGTAGAAATTGAAGGTGA+TGG | 0.579722 | 6.2:-52573672 | None:intergenic |
| TTGGAGGCATTAACAAGAAG+GGG | 0.580609 | 6.2:+52573598 | MS.gene86852:CDS |
| CATGATAAAGGTGAATGGAT+TGG | 0.585265 | 6.2:+52573061 | MS.gene86852:CDS |
| TCGTAAATCTCAAACCATGT+TGG | 0.585577 | 6.2:-52573328 | None:intergenic |
| AAGGCCTTCGGTTATGCCAG+TGG | 0.585594 | 6.2:+52572464 | MS.gene86852:CDS |
| TGACAACTTGAAACAGTTGG+AGG | 0.589439 | 6.2:+52573084 | MS.gene86852:CDS |
| TACTATTACTGGAGTAGCCA+CGG | 0.591918 | 6.2:+52572435 | MS.gene86852:CDS |
| AAAAGAGCTTTAATAATAGG+GGG | 0.601829 | 6.2:+52572996 | MS.gene86852:CDS |
| GTTTGTAGGCTAAATTCAAG+TGG | 0.608599 | 6.2:+52572948 | MS.gene86852:intron |
| GGAGTAGCCACGGTGAACAA+AGG | 0.612698 | 6.2:+52572445 | MS.gene86852:CDS |
| AACACTTCAATTCAGCCGGA+AGG | 0.621409 | 6.2:+52573843 | MS.gene86852:CDS |
| ACCACTACGCACCTTGAACA+GGG | 0.621820 | 6.2:-52573038 | None:intergenic |
| AGATTCCTGAACATCGCAAG+TGG | 0.622921 | 6.2:+52572205 | MS.gene86852:CDS |
| TTTGAGAAACACTCTCAAAG+TGG | 0.627086 | 6.2:+52573516 | MS.gene86852:CDS |
| GAAACCACTGGCATAACCGA+AGG | 0.645260 | 6.2:-52572468 | None:intergenic |
| ATGACATCGTCAACTAACTG+AGG | 0.647309 | 6.2:-52572378 | None:intergenic |
| AATTGGATAGGGAACCAACA+TGG | 0.651250 | 6.2:+52573314 | MS.gene86852:CDS |
| GGACACAATGTGCATAGTGG+AGG | 0.661970 | 6.2:+52573175 | MS.gene86852:CDS |
| GCCCTGTTCAAGGTGCGTAG+TGG | 0.664644 | 6.2:+52573037 | MS.gene86852:CDS |
| CAAAAGGGAAACCAGATGGG+TGG | 0.669221 | 6.2:+52573365 | MS.gene86852:CDS |
| CCGAAGGCCTTTGTTCACCG+TGG | 0.696547 | 6.2:-52572452 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATCTGATAGTATT+TGG | + | chr6.2:52572728-52572747 | MS.gene86852:intron | 15.0% |
| !! | AAATTATGATATCTTATAGT+TGG | + | chr6.2:52572648-52572667 | MS.gene86852:intron | 15.0% |
| !! | AATTGACAATGATATTTATA+TGG | + | chr6.2:52573569-52573588 | MS.gene86852:CDS | 15.0% |
| !! | TCATATCATATAAATCAAAT+AGG | - | chr6.2:52572853-52572872 | None:intergenic | 15.0% |
| !!! | TAAAAAGAGCTTTAATAATA+GGG | + | chr6.2:52572994-52573013 | MS.gene86852:CDS | 15.0% |
| !!! | TTAAAAAGAGCTTTAATAAT+AGG | + | chr6.2:52572993-52573012 | MS.gene86852:CDS | 15.0% |
| !! | ACAAATGTAGTTACATAAAT+AGG | + | chr6.2:52572590-52572609 | MS.gene86852:intron | 20.0% |
| !! | CATAATTTCACAATATTCAT+TGG | - | chr6.2:52572636-52572655 | None:intergenic | 20.0% |
| !! | CTATGACTAATAAACAAAAT+AGG | + | chr6.2:52573140-52573159 | MS.gene86852:CDS | 20.0% |
| !! | GATATTTATATGGAAATTGT+TGG | + | chr6.2:52573579-52573598 | MS.gene86852:CDS | 20.0% |
| !!! | AAAAAGAGCTTTAATAATAG+GGG | + | chr6.2:52572995-52573014 | MS.gene86852:CDS | 20.0% |
| !!! | TAATAGTAACTCTTTTTTAC+AGG | + | chr6.2:52573473-52573492 | MS.gene86852:intron | 20.0% |
| ! | AATTTCCTATCATGTACAAT+AGG | + | chr6.2:52572557-52572576 | MS.gene86852:intron | 25.0% |
| ! | ACAAGATGATTTCAAAAAAG+TGG | + | chr6.2:52572314-52572333 | MS.gene86852:CDS | 25.0% |
| ! | ATGAAACATCTTTGTATGAA+GGG | + | chr6.2:52572399-52572418 | MS.gene86852:CDS | 25.0% |
| ! | ATGAAGCTATGTATTTGAAA+AGG | - | chr6.2:52572917-52572936 | None:intergenic | 25.0% |
| ! | ATTTATATGGAAATTGTTGG+AGG | + | chr6.2:52573582-52573601 | MS.gene86852:CDS | 25.0% |
| ! | CAAGATGATTTCAAAAAAGT+GGG | + | chr6.2:52572315-52572334 | MS.gene86852:CDS | 25.0% |
| ! | CAGAGGAAAGTTATATAAAT+AGG | + | chr6.2:52572771-52572790 | MS.gene86852:intron | 25.0% |
| ! | TATTTCCTATTGTACATGAT+AGG | - | chr6.2:52572565-52572584 | None:intergenic | 25.0% |
| !! | AAAAGAGCTTTAATAATAGG+GGG | + | chr6.2:52572996-52573015 | MS.gene86852:CDS | 25.0% |
| !! | TACACTTGCATATTTTACAT+GGG | - | chr6.2:52572353-52572372 | None:intergenic | 25.0% |
| !! | TAGAGTTACAGATAAGTTTT+TGG | + | chr6.2:52572257-52572276 | MS.gene86852:CDS | 25.0% |
| !! | TGAATTGAAGTGTTCATATT+AGG | - | chr6.2:52573837-52573856 | None:intergenic | 25.0% |
| !!! | CATACTAATTTGTTGTTTGT+TGG | + | chr6.2:52573273-52573292 | MS.gene86852:intron | 25.0% |
| !!! | CATGACATTTTTTTGTTTGT+AGG | + | chr6.2:52572934-52572953 | MS.gene86852:intron | 25.0% |
| !!! | GCTTTGGTTTAATGATTTTA+AGG | + | chr6.2:52572509-52572528 | MS.gene86852:intron | 25.0% |
| ACAAACTTCATAGACCAAAA+GGG | + | chr6.2:52573350-52573369 | MS.gene86852:CDS | 30.0% | |
| ATTAAAAAATGCCCTGTTCA+AGG | + | chr6.2:52573027-52573046 | MS.gene86852:CDS | 30.0% | |
| CATGAAACATCTTTGTATGA+AGG | + | chr6.2:52572398-52572417 | MS.gene86852:CDS | 30.0% | |
| TAGAGTGCATAGAAAAAGAA+TGG | + | chr6.2:52573210-52573229 | MS.gene86852:CDS | 30.0% | |
| TCATTGTCAATTTCTTCAGT+AGG | - | chr6.2:52573561-52573580 | None:intergenic | 30.0% | |
| TCTGTAACTCTACTATTATC+AGG | - | chr6.2:52572249-52572268 | None:intergenic | 30.0% | |
| TCTTTGTATGAAGGGATTTA+AGG | + | chr6.2:52572407-52572426 | MS.gene86852:CDS | 30.0% | |
| TTAAATGGGAAGAAGAGAAA+TGG | + | chr6.2:52573107-52573126 | MS.gene86852:CDS | 30.0% | |
| TTAAGGAGGATTACTATTAC+TGG | + | chr6.2:52572424-52572443 | MS.gene86852:CDS | 30.0% | |
| ! | ATGAAGCTTCATTGTTACTT+AGG | + | chr6.2:52572876-52572895 | MS.gene86852:intron | 30.0% |
| ! | CTACACTTGCATATTTTACA+TGG | - | chr6.2:52572354-52572373 | None:intergenic | 30.0% |
| ! | TGATAGTATTTGGTAGCATA+GGG | + | chr6.2:52572738-52572757 | MS.gene86852:intron | 30.0% |
| ! | TTTTTCCGAAGAATCTACAT+CGG | - | chr6.2:52573694-52573713 | None:intergenic | 30.0% |
| !!! | GTTACAGATAAGTTTTTGGT+CGG | + | chr6.2:52572261-52572280 | MS.gene86852:CDS | 30.0% |
| !!! | TATGTTTTAGAGAGTGGAAT+TGG | + | chr6.2:52573297-52573316 | MS.gene86852:intron | 30.0% |
| !!! | TTACAGATAAGTTTTTGGTC+GGG | + | chr6.2:52572262-52572281 | MS.gene86852:CDS | 30.0% |
| AAAAGAGCAGCAATTCCAAT+AGG | - | chr6.2:52572828-52572847 | None:intergenic | 35.0% | |
| ACAACTCGTATTAGTTGCTT+TGG | + | chr6.2:52572493-52572512 | MS.gene86852:intron | 35.0% | |
| AGAAACGCTAAAACTGAAGA+TGG | + | chr6.2:52573779-52573798 | MS.gene86852:CDS | 35.0% | |
| CATGATAAAGGTGAATGGAT+TGG | + | chr6.2:52573061-52573080 | MS.gene86852:CDS | 35.0% | |
| CTTTAATAATAGGGGGTCTT+TGG | + | chr6.2:52573003-52573022 | MS.gene86852:CDS | 35.0% | |
| GAAACAGTTGGAGGTTAAAT+GGG | + | chr6.2:52573093-52573112 | MS.gene86852:CDS | 35.0% | |
| GACAAACTTCATAGACCAAA+AGG | + | chr6.2:52573349-52573368 | MS.gene86852:CDS | 35.0% | |
| GTTTGTAGGCTAAATTCAAG+TGG | + | chr6.2:52572948-52572967 | MS.gene86852:intron | 35.0% | |
| TATGAACACTTCAATTCAGC+CGG | + | chr6.2:52573839-52573858 | MS.gene86852:CDS | 35.0% | |
| TATGTGCAACATGATCCTAT+TGG | + | chr6.2:52572810-52572829 | MS.gene86852:intron | 35.0% | |
| TCGTAAATCTCAAACCATGT+TGG | - | chr6.2:52573331-52573350 | None:intergenic | 35.0% | |
| TCTACATCGGTAGAAATTGA+AGG | - | chr6.2:52573681-52573700 | None:intergenic | 35.0% | |
| TGAAACAGTTGGAGGTTAAA+TGG | + | chr6.2:52573092-52573111 | MS.gene86852:CDS | 35.0% | |
| TTAGAGAGTGGAATTGGATA+GGG | + | chr6.2:52573303-52573322 | MS.gene86852:intron | 35.0% | |
| TTCTACCGATGTAGATTCTT+CGG | + | chr6.2:52573686-52573705 | MS.gene86852:CDS | 35.0% | |
| TTGTATGAAGGGATTTAAGG+AGG | + | chr6.2:52572410-52572429 | MS.gene86852:CDS | 35.0% | |
| TTTAGAGAGTGGAATTGGAT+AGG | + | chr6.2:52573302-52573321 | MS.gene86852:intron | 35.0% | |
| TTTGAGAAACACTCTCAAAG+TGG | + | chr6.2:52573516-52573535 | MS.gene86852:CDS | 35.0% | |
| ! | CAAAATAGGCAGTCTAAAGT+TGG | + | chr6.2:52573154-52573173 | MS.gene86852:CDS | 35.0% |
| ! | CTGATAGTATTTGGTAGCAT+AGG | + | chr6.2:52572737-52572756 | MS.gene86852:intron | 35.0% |
| ! | GATAGTATTTGGTAGCATAG+GGG | + | chr6.2:52572739-52572758 | MS.gene86852:intron | 35.0% |
| ! | GTTTCTCAAACGTTTGAGTT+TGG | - | chr6.2:52573506-52573525 | None:intergenic | 35.0% |
| !!! | GTTGGTTATGTTTTAGAGAG+TGG | + | chr6.2:52573291-52573310 | MS.gene86852:intron | 35.0% |
| !!! | TACAGATAAGTTTTTGGTCG+GGG | + | chr6.2:52572263-52572282 | MS.gene86852:CDS | 35.0% |
| AATTGGATAGGGAACCAACA+TGG | + | chr6.2:52573314-52573333 | MS.gene86852:CDS | 40.0% | |
| AGCAGTTAGTGCTTCAATCT+TGG | - | chr6.2:52573733-52573752 | None:intergenic | 40.0% | |
| ATCGCAAGTGGATGGATAAT+AGG | + | chr6.2:52572217-52572236 | MS.gene86852:CDS | 40.0% | |
| ATGACATCGTCAACTAACTG+AGG | - | chr6.2:52572381-52572400 | None:intergenic | 40.0% | |
| GTGGTCATGATAAAGGTGAA+TGG | + | chr6.2:52573056-52573075 | MS.gene86852:CDS | 40.0% | |
| GTTTCATTAAACCACCCATC+TGG | - | chr6.2:52573379-52573398 | None:intergenic | 40.0% | |
| TACTATTACTGGAGTAGCCA+CGG | + | chr6.2:52572435-52572454 | MS.gene86852:CDS | 40.0% | |
| TCGGTAGAAATTGAAGGTGA+TGG | - | chr6.2:52573675-52573694 | None:intergenic | 40.0% | |
| TCTATGCACTCTAGCAGATA+TGG | - | chr6.2:52573203-52573222 | None:intergenic | 40.0% | |
| TGACAACTTGAAACAGTTGG+AGG | + | chr6.2:52573084-52573103 | MS.gene86852:CDS | 40.0% | |
| TGGTGACAACTTGAAACAGT+TGG | + | chr6.2:52573081-52573100 | MS.gene86852:CDS | 40.0% | |
| TTCGGAAAAAGTTGCTGCTA+TGG | + | chr6.2:52573704-52573723 | MS.gene86852:CDS | 40.0% | |
| ! | TACGAGTTGTTTGAAACCAC+TGG | - | chr6.2:52572483-52572502 | None:intergenic | 40.0% |
| !! | GTTGGAGGCATTAACAAGAA+GGG | + | chr6.2:52573597-52573616 | MS.gene86852:CDS | 40.0% |
| !! | TGTTGGAGGCATTAACAAGA+AGG | + | chr6.2:52573596-52573615 | MS.gene86852:CDS | 40.0% |
| !! | TTGGAGGCATTAACAAGAAG+GGG | + | chr6.2:52573598-52573617 | MS.gene86852:CDS | 40.0% |
| AACACTTCAATTCAGCCGGA+AGG | + | chr6.2:52573843-52573862 | MS.gene86852:CDS | 45.0% | |
| AGACCAAAAGGGAAACCAGA+TGG | + | chr6.2:52573361-52573380 | MS.gene86852:CDS | 45.0% | |
| AGATTCCTGAACATCGCAAG+TGG | + | chr6.2:52572205-52572224 | MS.gene86852:CDS | 45.0% | |
| AGCGCTTGGAGCAAATGATT+GGG | + | chr6.2:52573802-52573821 | MS.gene86852:CDS | 45.0% | |
| CATAGGGGATATACAAGCAG+AGG | + | chr6.2:52572754-52572773 | MS.gene86852:intron | 45.0% | |
| CCATTATCACCTTCTCCTTC+CGG | - | chr6.2:52573861-52573880 | None:intergenic | 45.0% | |
| GACCAAAAGGGAAACCAGAT+GGG | + | chr6.2:52573362-52573381 | MS.gene86852:CDS | 45.0% | |
| GGAAAAAGTTGCTGCTATGG+AGG | + | chr6.2:52573707-52573726 | MS.gene86852:CDS | 45.0% | |
| GTGCGTAGTGGTCATGATAA+AGG | + | chr6.2:52573049-52573068 | MS.gene86852:CDS | 45.0% | |
| GTTGGACACAATGTGCATAG+TGG | + | chr6.2:52573172-52573191 | MS.gene86852:CDS | 45.0% | |
| ! | AAAACTGAAGATGGAGCGCT+TGG | + | chr6.2:52573788-52573807 | MS.gene86852:CDS | 45.0% |
| ACCACTACGCACCTTGAACA+GGG | - | chr6.2:52573041-52573060 | None:intergenic | 50.0% | |
| CAAAAGGGAAACCAGATGGG+TGG | + | chr6.2:52573365-52573384 | MS.gene86852:CDS | 50.0% | |
| CCGGAAGGAGAAGGTGATAA+TGG | + | chr6.2:52573858-52573877 | MS.gene86852:CDS | 50.0% | |
| GAAACCACTGGCATAACCGA+AGG | - | chr6.2:52572471-52572490 | None:intergenic | 50.0% | |
| GAGCGCTTGGAGCAAATGAT+TGG | + | chr6.2:52573801-52573820 | MS.gene86852:CDS | 50.0% | |
| GGACACAATGTGCATAGTGG+AGG | + | chr6.2:52573175-52573194 | MS.gene86852:CDS | 50.0% | |
| TCAATTCAGCCGGAAGGAGA+AGG | + | chr6.2:52573849-52573868 | MS.gene86852:CDS | 50.0% | |
| TCCATCCACTTGCGATGTTC+AGG | - | chr6.2:52572213-52572232 | None:intergenic | 50.0% | |
| TCCTGAACATCGCAAGTGGA+TGG | + | chr6.2:52572209-52572228 | MS.gene86852:CDS | 50.0% | |
| ! | AACAAGAAGGGGCGCATGTT+TGG | + | chr6.2:52573609-52573628 | MS.gene86852:CDS | 50.0% |
| ! | AAGGGGCGCATGTTTGGATT+AGG | + | chr6.2:52573615-52573634 | MS.gene86852:CDS | 50.0% |
| !! | CACCCATCTGGTTTCCCTTT+TGG | - | chr6.2:52573367-52573386 | None:intergenic | 50.0% |
| AAGGCCTTCGGTTATGCCAG+TGG | + | chr6.2:52572464-52572483 | MS.gene86852:CDS | 55.0% | |
| CCACGGTGAACAAAGGCCTT+CGG | + | chr6.2:52572452-52572471 | MS.gene86852:CDS | 55.0% | |
| GACCACTACGCACCTTGAAC+AGG | - | chr6.2:52573042-52573061 | None:intergenic | 55.0% | |
| GGAGTAGCCACGGTGAACAA+AGG | + | chr6.2:52572445-52572464 | MS.gene86852:CDS | 55.0% | |
| CCGAAGGCCTTTGTTCACCG+TGG | - | chr6.2:52572455-52572474 | None:intergenic | 60.0% | |
| GCCCTGTTCAAGGTGCGTAG+TGG | + | chr6.2:52573037-52573056 | MS.gene86852:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 52572201 | 52573905 | 52572201 | ID=MS.gene86852 |
| chr6.2 | mRNA | 52572201 | 52573905 | 52572201 | ID=MS.gene86852.t1;Parent=MS.gene86852 |
| chr6.2 | exon | 52572201 | 52572485 | 52572201 | ID=MS.gene86852.t1.exon1;Parent=MS.gene86852.t1 |
| chr6.2 | CDS | 52572201 | 52572485 | 52572201 | ID=cds.MS.gene86852.t1;Parent=MS.gene86852.t1 |
| chr6.2 | exon | 52572956 | 52573231 | 52572956 | ID=MS.gene86852.t1.exon2;Parent=MS.gene86852.t1 |
| chr6.2 | CDS | 52572956 | 52573231 | 52572956 | ID=cds.MS.gene86852.t1;Parent=MS.gene86852.t1 |
| chr6.2 | exon | 52573307 | 52573414 | 52573307 | ID=MS.gene86852.t1.exon3;Parent=MS.gene86852.t1 |
| chr6.2 | CDS | 52573307 | 52573414 | 52573307 | ID=cds.MS.gene86852.t1;Parent=MS.gene86852.t1 |
| chr6.2 | exon | 52573495 | 52573905 | 52573495 | ID=MS.gene86852.t1.exon4;Parent=MS.gene86852.t1 |
| chr6.2 | CDS | 52573495 | 52573905 | 52573495 | ID=cds.MS.gene86852.t1;Parent=MS.gene86852.t1 |
| Gene Sequence |
| Protein sequence |
