AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053592


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053592.t1 MTR_4g093280 78.591 369 51 3 1 341 1 369 0.0 566
MS.gene053592.t1 MTR_4g093280 62.712 118 42 1 151 268 311 426 8.42e-37 139
MS.gene053592.t1 MTR_4g093510 66.120 366 94 3 1 336 1 366 9.49e-163 467
MS.gene053592.t1 MTR_4g093510 59.524 126 46 3 136 256 291 416 9.99e-35 134
MS.gene053592.t1 MTR_4g093260 63.127 339 77 4 1 317 1 313 2.03e-140 414
MS.gene053592.t1 MTR_4g093260 59.763 169 53 4 151 317 284 439 3.62e-50 179
MS.gene053592.t1 MTR_4g093260 50.806 124 57 3 150 271 409 530 1.18e-24 106
MS.gene053592.t1 MTR_4g093260 60.767 339 76 5 1 317 1 304 1.19e-130 389
MS.gene053592.t1 MTR_4g093260 59.763 169 53 4 151 317 275 430 3.21e-50 179
MS.gene053592.t1 MTR_4g093260 50.806 124 57 3 150 271 400 521 1.28e-24 106
MS.gene053592.t1 MTR_4g093270 60.000 260 79 3 20 256 17 274 9.75e-103 306
MS.gene053592.t1 MTR_4g093260 54.430 237 60 4 103 317 1 211 4.83e-70 229
MS.gene053592.t1 MTR_4g093260 59.763 169 53 4 151 317 182 337 3.38e-50 177
MS.gene053592.t1 MTR_4g093260 51.639 122 55 3 152 271 309 428 7.95e-24 103
MS.gene053592.t1 MTR_4g108350 37.241 145 81 3 20 157 25 166 8.84e-23 94.4
MS.gene053592.t1 MTR_5g039530 37.748 151 84 3 6 146 8 158 7.23e-21 89.4
MS.gene053592.t1 MTR_4g108350 36.296 135 76 3 30 157 26 157 5.29e-18 80.9
MS.gene053592.t1 MTR_8g096670 36.957 92 55 1 16 107 3 91 3.36e-17 77.0
MS.gene053592.t1 MTR_8g096670 35.106 94 58 1 14 107 11 101 7.35e-16 73.6
MS.gene053592.t1 MTR_5g091800 33.088 136 77 2 20 146 17 147 4.28e-15 72.8
MS.gene053592.t1 MTR_3g452470 32.593 135 80 3 20 146 17 148 6.02e-14 69.3
MS.gene053592.t1 MTR_3g099010 36.782 87 55 0 14 100 11 97 8.77e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053592.t1 AT1G74520 38.272 162 91 3 6 161 8 166 1.57e-27 107
MS.gene053592.t1 AT1G74520 38.272 162 91 3 6 161 8 166 1.57e-27 107
MS.gene053592.t1 AT1G69700 38.411 151 86 3 6 149 10 160 2.10e-22 94.0
MS.gene053592.t1 AT5G50720 38.462 91 56 0 10 100 7 97 2.07e-17 78.2
MS.gene053592.t1 AT5G62490 33.333 150 93 2 6 153 8 152 4.52e-17 78.6
MS.gene053592.t1 AT4G24960 34.091 88 58 0 13 100 10 97 5.05e-14 68.9
MS.gene053592.t1 AT2G42820 37.037 81 51 0 20 100 17 97 1.11e-12 65.9
MS.gene053592.t1 AT4G24960 33.766 77 51 0 24 100 2 78 1.66e-12 64.7

Find 83 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCTGTCATTCCTGAAAT+TGG 0.144406 4.4:+21497511 MS.gene053592:CDS
GAGAGATATATTTCAGAAAA+TGG 0.226331 4.4:+21496759 MS.gene053592:CDS
TTTGGAGGCTATTGAGAAAA+AGG 0.240588 4.4:+21497996 MS.gene053592:CDS
GACTTGAGTTCCCACCTTAC+TGG 0.284009 4.4:+21497688 MS.gene053592:CDS
TTGGAATTAATCATCCTAAT+AGG 0.284694 4.4:-21498481 None:intergenic
TGTATGAAGCCTTACTTTCT+CGG 0.320172 4.4:-21498031 None:intergenic
AGCCTTACTTGCTTGGTTGC+AGG 0.322467 4.4:-21497210 None:intergenic
AGAACCTATCAGAACCTATT+AGG 0.329675 4.4:+21498467 MS.gene053592:CDS
GAACAAAGACATCATAGATT+TGG 0.334008 4.4:+21497164 MS.gene053592:CDS
GTTGGCAATGACTTTCTCTA+AGG 0.334076 4.4:-21496790 None:intergenic
GAACAAAGACATCAAAGATT+TGG 0.334821 4.4:+21497978 MS.gene053592:CDS
TTCTAGGCCACTTGTTGCTC+TGG 0.337704 4.4:+21495859 MS.gene053592:intron
AAATCTTGTAATTACCTTGT+TGG 0.348314 4.4:-21496808 None:intergenic
CTAAGGATTTGATCTCATAT+TGG 0.368288 4.4:+21496046 MS.gene053592:CDS
ATATTCAAAGAGGTAAATTA+AGG 0.374191 4.4:-21496079 None:intergenic
CCCTGTGTCTCCTTCCCCTC+AGG 0.376332 4.4:-21498399 None:intergenic
CTCTGTGTTTCCTCCCAGTA+AGG 0.380761 4.4:-21497702 None:intergenic
AAGGAGACACAGGGAAACTA+TGG 0.387321 4.4:+21498408 MS.gene053592:CDS
TCCCCTCAGGTGGGAAATCA+AGG 0.395905 4.4:-21498386 None:intergenic
TTTCTTCTTGTGCAGACAAA+TGG 0.406488 4.4:+21497937 MS.gene053592:intron
TCATCCTAATAGGTTCTGAT+AGG 0.414047 4.4:-21498471 None:intergenic
TTCCTGTCATTCCTGAAATT+GGG 0.423246 4.4:+21497512 MS.gene053592:CDS
AGCCTTACTTTCTCGGTTGA+AGG 0.427355 4.4:-21498024 None:intergenic
TCCATATCAGGTTTCACCTC+TGG 0.429049 4.4:+21496565 MS.gene053592:intron
CTGGCTGTACATTAAGCTAA+TGG 0.447550 4.4:+21496584 MS.gene053592:CDS
TGTGACGATGTGGGGTTTCA+TGG 0.450530 4.4:-21496673 None:intergenic
GTGGACTTGTGCTTTATGTT+TGG 0.455948 4.4:+21497645 MS.gene053592:CDS
GTGGACTTGTGCTTTATGTT+TGG 0.459600 4.4:+21498342 MS.gene053592:CDS
TGTGTCTCCTTCCCCTCAGG+TGG 0.461654 4.4:-21498396 None:intergenic
CTTAGTTTCTGCATAGGAAT+CGG 0.466130 4.4:-21496028 None:intergenic
TGAATGAAGCCTTACTTGCT+TGG 0.466960 4.4:-21497217 None:intergenic
TAAGAAGCTCGTTCAAAGTC+CGG 0.476214 4.4:-21496627 None:intergenic
CACAGAAGGAAATGCAGAAA+AGG 0.476546 4.4:+21497623 MS.gene053592:CDS
ACTTGAGTTCCCACCTTACT+GGG 0.490152 4.4:+21497689 MS.gene053592:CDS
CGATTCCTATGCAGAAACTA+AGG 0.491463 4.4:+21496029 MS.gene053592:CDS
GCTGAAAGTGTCACAGCTTG+TGG 0.498708 4.4:+21498274 MS.gene053592:intron
GGCCCAATTTCAGGAATGAC+AGG 0.501371 4.4:-21497514 None:intergenic
ACCTGAGGGGAAGGAGACAC+AGG 0.508727 4.4:+21498398 MS.gene053592:CDS
CATGGAGGTTAAATGACTAC+TGG 0.509030 4.4:+21496694 MS.gene053592:CDS
TTGTGCTTTATGTTTGGTAA+CGG 0.515135 4.4:+21498348 MS.gene053592:CDS
CCTAGAGAAGCAAAAGGATG+TGG 0.517116 4.4:+21497762 MS.gene053592:CDS
TGTGTTTCCTCCCAGTAAGG+TGG 0.518460 4.4:-21497699 None:intergenic
AACCTTGATTTCCCACCTGA+GGG 0.523324 4.4:+21498384 MS.gene053592:CDS
TGATTTCCCACCTGAGGGGA+AGG 0.524616 4.4:+21498389 MS.gene053592:CDS
AAAGAATTTACCATAGAAGA+AGG 0.524895 4.4:-21496113 None:intergenic
AGCTGGTGGAGAGTTTCCAC+AGG 0.525285 4.4:+21497594 MS.gene053592:CDS
CAAAGACATCAAAGATTTGG+AGG 0.526138 4.4:+21497981 MS.gene053592:CDS
CAAATCCTTAGTTTCTGCAT+AGG 0.531143 4.4:-21496034 None:intergenic
CATCTTCTGCCTCATCATAC+CGG 0.545247 4.4:+21496608 MS.gene053592:CDS
AGAAGGCAGTGCAGAAAGAG+TGG 0.545798 4.4:+21498323 MS.gene053592:CDS
GTGTTTCCTCCCAGTAAGGT+GGG 0.550796 4.4:-21497698 None:intergenic
TCCTCAGAGTTCTACACAGA+AGG 0.558127 4.4:+21498306 MS.gene053592:CDS
ACCTACCCTAGAGAAGCAAA+AGG 0.570301 4.4:+21497756 MS.gene053592:CDS
AACCTCCATGTGACGATGTG+GGG 0.570336 4.4:-21496681 None:intergenic
GCAGAGAATGACAGAGCTGG+TGG 0.571170 4.4:+21497580 MS.gene053592:CDS
TGATAATAAAGAAATACTAA+AGG 0.577527 4.4:+21497810 MS.gene053592:CDS
TCCACAGGGTTGTACACAGA+AGG 0.578063 4.4:+21497609 MS.gene053592:CDS
TCAGCCACAGTGGAAACTAA+AGG 0.582324 4.4:+21497553 MS.gene053592:CDS
GTGTCTCCTTCCCCTCAGGT+GGG 0.586091 4.4:-21498395 None:intergenic
TAACCTCCATGTGACGATGT+GGG 0.588002 4.4:-21496682 None:intergenic
GAGAAGCAAAAGGATGTGGA+AGG 0.595431 4.4:+21497766 MS.gene053592:CDS
ACAGCAGAGAATGACAGAGC+TGG 0.596779 4.4:+21497577 MS.gene053592:CDS
TGTCACAGCTTGTGGAGAGG+AGG 0.601283 4.4:+21498282 MS.gene053592:CDS
AGAAGGAAATGCAGAAAAGG+TGG 0.606490 4.4:+21497626 MS.gene053592:CDS
TTAACCTCCATGTGACGATG+TGG 0.606838 4.4:-21496683 None:intergenic
AAACCTTGATTTCCCACCTG+AGG 0.613224 4.4:+21498383 MS.gene053592:CDS
AGAGAAAGTCATTGCCAACA+AGG 0.613966 4.4:+21496794 MS.gene053592:CDS
TCATAAAAGCATATTCAAAG+AGG 0.621411 4.4:-21496089 None:intergenic
TGAAACCCCACATCGTCACA+TGG 0.625636 4.4:+21496676 MS.gene053592:CDS
GTTCAAAGTCCGGTATGATG+AGG 0.637874 4.4:-21496617 None:intergenic
CCTGAGGGGAAGGAGACACA+GGG 0.643482 4.4:+21498399 MS.gene053592:CDS
TCCTTCTGTGTACAACCCTG+TGG 0.657545 4.4:-21497610 None:intergenic
AAATGCATCATCAGCCACAG+TGG 0.664078 4.4:+21497543 MS.gene053592:CDS
AAGTGTCACAGCTTGTGGAG+AGG 0.670743 4.4:+21498279 MS.gene053592:intron
ACCTTGATTTCCCACCTGAG+GGG 0.671087 4.4:+21498385 MS.gene053592:CDS
AGAAGCAAAAGGATGTGGAA+GGG 0.674625 4.4:+21497767 MS.gene053592:CDS
GGATACACCAGAGCAACAAG+TGG 0.683379 4.4:-21495866 None:intergenic
TTAGCTTAATGTACAGCCAG+AGG 0.701171 4.4:-21496581 None:intergenic
GCTGGTGGAGAGTTTCCACA+GGG 0.711955 4.4:+21497595 MS.gene053592:CDS
TGAGTTCCCACCTTACTGGG+AGG 0.712408 4.4:+21497692 MS.gene053592:CDS
GCCTTCTGTGTAGAACTCTG+AGG 0.716594 4.4:-21498307 None:intergenic
TGTTCCTTTAGTTTCCACTG+TGG 0.729490 4.4:-21497557 None:intergenic
AACCCCACATCGTCACATGG+AGG 0.742010 4.4:+21496679 MS.gene053592:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCATATAAAAAAAAAAAG+AGG - chr4.4:21495969-21495988 None:intergenic 10.0%
!! ATACAAAATAATAATGTAAA+AGG - chr4.4:21495940-21495959 None:intergenic 10.0%
!! AAACTTAAGAAGAATTATAT+AGG + chr4.4:21496855-21496874 MS.gene053592:intron 15.0%
!! AACTTAAGAAGAATTATATA+GGG + chr4.4:21496856-21496875 MS.gene053592:intron 15.0%
!! TGATAATAAAGAAATACTAA+AGG + chr4.4:21497810-21497829 MS.gene053592:CDS 15.0%
!!! TAGTATATATATGAATTTTG+TGG + chr4.4:21498145-21498164 MS.gene053592:intron 15.0%
!! AAATAGAAGGAAATAAAAGA+AGG - chr4.4:21495840-21495859 None:intergenic 20.0%
!! AATTCTTAATAGAGATTATC+AGG + chr4.4:21496391-21496410 MS.gene053592:intron 20.0%
!! ATATTCAAAGAGGTAAATTA+AGG - chr4.4:21496082-21496101 None:intergenic 20.0%
!! ATTCTTAATAGAGATTATCA+GGG + chr4.4:21496392-21496411 MS.gene053592:intron 20.0%
!! GATAATCTCTATTAAGAATT+TGG - chr4.4:21496391-21496410 None:intergenic 20.0%
!! GCTGTATAAGAAAATAAATA+AGG + chr4.4:21496446-21496465 MS.gene053592:intron 20.0%
!! TGTATTCTTCCAATTATATT+GGG + chr4.4:21497426-21497445 MS.gene053592:intron 20.0%
!!! AATAAGGCTATTTTATTCAA+TGG + chr4.4:21496462-21496481 MS.gene053592:intron 20.0%
!!! ACATTAAAATTTTCGACTTT+TGG + chr4.4:21497270-21497289 MS.gene053592:intron 20.0%
!!! ATTTTTATTGTCATTGTTGT+TGG + chr4.4:21498179-21498198 MS.gene053592:intron 20.0%
!!! CACAATTCTAATTTGTTTTA+GGG - chr4.4:21498079-21498098 None:intergenic 20.0%
!!! CTTCTTAAGTTTTAGTATTT+GGG - chr4.4:21496847-21496866 None:intergenic 20.0%
!!! TCGAAAATTTTAATGTCTTT+GGG - chr4.4:21497266-21497285 None:intergenic 20.0%
!!! TCTTCTTAAGTTTTAGTATT+TGG - chr4.4:21496848-21496867 None:intergenic 20.0%
!!! TTTATTTCCTTCTATTTTCT+AGG + chr4.4:21495843-21495862 MS.gene053592:intron 20.0%
!!! TTTATTTTCTTATACAGCAA+AGG - chr4.4:21496444-21496463 None:intergenic 20.0%
!!! TTTTTTATATGATTACGGTT+TGG + chr4.4:21495975-21495994 MS.gene053592:intron 20.0%
! AAAGAATTTACCATAGAAGA+AGG - chr4.4:21496116-21496135 None:intergenic 25.0%
! AAATCTTGTAATTACCTTGT+TGG - chr4.4:21496811-21496830 None:intergenic 25.0%
! CCTAAAACAAATTAGAATTG+TGG + chr4.4:21498077-21498096 MS.gene053592:intron 25.0%
! GAGAGATATATTTCAGAAAA+TGG + chr4.4:21496759-21496778 MS.gene053592:CDS 25.0%
! GATTAATCTTAACTTCAATG+AGG - chr4.4:21496351-21496370 None:intergenic 25.0%
! GTGTATTCTTCCAATTATAT+TGG + chr4.4:21497425-21497444 MS.gene053592:intron 25.0%
! TAATATTGTGGCAAGTTAAA+CGG + chr4.4:21498219-21498238 MS.gene053592:intron 25.0%
! TACACATTGTGTTCTTTAAT+AGG - chr4.4:21496954-21496973 None:intergenic 25.0%
! TGATGATAAAGATATGCTAA+TGG + chr4.4:21497011-21497030 MS.gene053592:intron 25.0%
!! ACATTTTGAACATATAACTG+TGG - chr4.4:21497396-21497415 None:intergenic 25.0%
!! GTAGTTTTTGTGCTAAAATA+AGG + chr4.4:21496236-21496255 MS.gene053592:intron 25.0%
!! TCATAAAAGCATATTCAAAG+AGG - chr4.4:21496092-21496111 None:intergenic 25.0%
!! TTTTAGTATTTGGGCTTTTT+TGG - chr4.4:21496838-21496857 None:intergenic 25.0%
!!! CCACAATTCTAATTTGTTTT+AGG - chr4.4:21498080-21498099 None:intergenic 25.0%
!!! CTACTTGTTGTAAAAAAACA+AGG - chr4.4:21496159-21496178 None:intergenic 25.0%
!!! GTCGAAAATTTTAATGTCTT+TGG - chr4.4:21497267-21497286 None:intergenic 25.0%
AAATTAGAATTGTGGAGTTG+AGG + chr4.4:21498085-21498104 MS.gene053592:intron 30.0%
AAATTCTTTGCCCTCAAATA+TGG + chr4.4:21496127-21496146 MS.gene053592:intron 30.0%
AAGTTATTGGTGAAACGATT+AGG + chr4.4:21497302-21497321 MS.gene053592:intron 30.0%
ACATCCAAATATTTGCATCA+AGG - chr4.4:21497483-21497502 None:intergenic 30.0%
AGTTAAACAACTGCATGAAT+TGG - chr4.4:21496530-21496549 None:intergenic 30.0%
CTAAGGATTTGATCTCATAT+TGG + chr4.4:21496046-21496065 MS.gene053592:CDS 30.0%
GAACAAAGACATCAAAGATT+TGG + chr4.4:21497978-21497997 MS.gene053592:CDS 30.0%
GAACAAAGACATCATAGATT+TGG + chr4.4:21497164-21497183 MS.gene053592:CDS 30.0%
TCAATCTGAAGATGTATACA+AGG - chr4.4:21497328-21497347 None:intergenic 30.0%
TGCAAATATTTGGATGTTTC+AGG + chr4.4:21497486-21497505 MS.gene053592:intron 30.0%
TGCAAGTTGCATGAAATATT+TGG + chr4.4:21497457-21497476 MS.gene053592:intron 30.0%
TTGTGCTTTATGTTTGGTAA+CGG + chr4.4:21497651-21497670 MS.gene053592:CDS 30.0%
TTTCTTATACAGCAAAGGAT+CGG - chr4.4:21496439-21496458 None:intergenic 30.0%
! AATGAGGTACTAATTCTAAG+TGG - chr4.4:21496335-21496354 None:intergenic 30.0%
! AATGCATTCATCATTTTGCA+TGG + chr4.4:21495679-21495698 MS.gene053592:CDS 30.0%
! AGTTCCTTTGGTTTCTATTA+CGG - chr4.4:21498254-21498273 None:intergenic 30.0%
! ATATATGAATTTTGTGGACG+TGG + chr4.4:21498151-21498170 MS.gene053592:intron 30.0%
! GTTTTTGTGCTAAAATAAGG+TGG + chr4.4:21496239-21496258 MS.gene053592:intron 30.0%
AAATATGTCACCATGAGACT+GGG - chr4.4:21497902-21497921 None:intergenic 35.0%
AAGGCTGTTACCATATTTGA+GGG - chr4.4:21496140-21496159 None:intergenic 35.0%
ACTTGCCACAATATTAGCAT+AGG - chr4.4:21498215-21498234 None:intergenic 35.0%
AGGTCATTTGTGAAAGGTTT+AGG + chr4.4:21498117-21498136 MS.gene053592:intron 35.0%
ATATAGATGAGCAAGAAACG+AGG - chr4.4:21495721-21495740 None:intergenic 35.0%
ATTCCTGTCATTCCTGAAAT+TGG + chr4.4:21497511-21497530 MS.gene053592:CDS 35.0%
CAAAGACATCAAAGATTTGG+AGG + chr4.4:21497981-21498000 MS.gene053592:CDS 35.0%
CAAATCCTTAGTTTCTGCAT+AGG - chr4.4:21496037-21496056 None:intergenic 35.0%
CCTATGTAAGTTCTTGTTCT+GGG + chr4.4:21495887-21495906 MS.gene053592:intron 35.0%
CTATGTAAGTTCTTGTTCTG+GGG + chr4.4:21495888-21495907 MS.gene053592:intron 35.0%
CTTAGTTTCTGCATAGGAAT+CGG - chr4.4:21496031-21496050 None:intergenic 35.0%
GAGAACCTATGCTAATATTG+TGG + chr4.4:21498207-21498226 MS.gene053592:intron 35.0%
GCATGCAAGTAATAATGTGA+AGG - chr4.4:21495803-21495822 None:intergenic 35.0%
TATAGATGAGCAAGAAACGA+GGG - chr4.4:21495720-21495739 None:intergenic 35.0%
TCCTATGTAAGTTCTTGTTC+TGG + chr4.4:21495886-21495905 MS.gene053592:intron 35.0%
TGAAACCTGATATGGAACAT+GGG - chr4.4:21496561-21496580 None:intergenic 35.0%
TGTATGAAGCCTTACTTTCT+CGG - chr4.4:21498034-21498053 None:intergenic 35.0%
TTCCTGTCATTCCTGAAATT+GGG + chr4.4:21497512-21497531 MS.gene053592:CDS 35.0%
TTCTAACTATACGAGTGTCA+TGG + chr4.4:21497070-21497089 MS.gene053592:intron 35.0%
TTGGCATGCTAAGAAGTTAT+TGG + chr4.4:21497289-21497308 MS.gene053592:intron 35.0%
TTTCTTCTTGTGCAGACAAA+TGG + chr4.4:21497937-21497956 MS.gene053592:intron 35.0%
TTTGGAGGCTATTGAGAAAA+AGG + chr4.4:21497996-21498015 MS.gene053592:CDS 35.0%
! AGTATGCATGATAGTGAGTT+TGG + chr4.4:21496177-21496196 MS.gene053592:intron 35.0%
! CTTTTATGAGCCTTCTTCTA+TGG + chr4.4:21496103-21496122 MS.gene053592:CDS 35.0%
! TATATGATTACGGTTTGGAC+AGG + chr4.4:21495980-21495999 MS.gene053592:intron 35.0%
! TTCTGATAGGTTCTTTTGCA+GGG - chr4.4:21498461-21498480 None:intergenic 35.0%
!! TTGGCCTTGATGCAAATATT+TGG + chr4.4:21497476-21497495 MS.gene053592:intron 35.0%
AGAAGCAAAAGGATGTGGAA+GGG + chr4.4:21497767-21497786 MS.gene053592:CDS 40.0%
AGAAGGAAATGCAGAAAAGG+TGG + chr4.4:21497626-21497645 MS.gene053592:CDS 40.0%
AGAGAAAGTCATTGCCAACA+AGG + chr4.4:21496794-21496813 MS.gene053592:CDS 40.0%
AGTATTACTCGTGCAGACAA+GGG - chr4.4:21497361-21497380 None:intergenic 40.0%
CAAGGCTGTTACCATATTTG+AGG - chr4.4:21496141-21496160 None:intergenic 40.0%
CAAGTGGCCTAGAAAATAGA+AGG - chr4.4:21495853-21495872 None:intergenic 40.0%
CACAGAAGGAAATGCAGAAA+AGG + chr4.4:21497623-21497642 MS.gene053592:CDS 40.0%
CATGGAGGTTAAATGACTAC+TGG + chr4.4:21496694-21496713 MS.gene053592:CDS 40.0%
CATTTCTCACTTCTGCATCA+GGG - chr4.4:21496978-21496997 None:intergenic 40.0%
CCCAGAACAAGAACTTACAT+AGG - chr4.4:21495890-21495909 None:intergenic 40.0%
CGATTCCTATGCAGAAACTA+AGG + chr4.4:21496029-21496048 MS.gene053592:CDS 40.0%
CTGGCTGTACATTAAGCTAA+TGG + chr4.4:21496584-21496603 MS.gene053592:CDS 40.0%
CTTCCAATTATATTGGGCCT+CGG + chr4.4:21497432-21497451 MS.gene053592:intron 40.0%
GAAATATGTCACCATGAGAC+TGG - chr4.4:21497903-21497922 None:intergenic 40.0%
GCTTAGAGGTCATTTGTGAA+AGG + chr4.4:21498111-21498130 MS.gene053592:intron 40.0%
GTGAAACCTGATATGGAACA+TGG - chr4.4:21496562-21496581 None:intergenic 40.0%
GTGGACTTGTGCTTTATGTT+TGG + chr4.4:21497645-21497664 MS.gene053592:CDS 40.0%
GTTGGCAATGACTTTCTCTA+AGG - chr4.4:21496793-21496812 None:intergenic 40.0%
TAACTATACGAGTGTCATGG+TGG + chr4.4:21497073-21497092 MS.gene053592:intron 40.0%
TAAGAAGCTCGTTCAAAGTC+CGG - chr4.4:21496630-21496649 None:intergenic 40.0%
TAGTATTACTCGTGCAGACA+AGG - chr4.4:21497362-21497381 None:intergenic 40.0%
TCAGCCGTAATAGAAACCAA+AGG + chr4.4:21498247-21498266 MS.gene053592:intron 40.0%
TCATTCCCATGTTCCATATC+AGG + chr4.4:21496553-21496572 MS.gene053592:intron 40.0%
TCATTTCTCACTTCTGCATC+AGG - chr4.4:21496979-21496998 None:intergenic 40.0%
TGAATGAAGCCTTACTTGCT+TGG - chr4.4:21497220-21497239 None:intergenic 40.0%
TTAGCTTAATGTACAGCCAG+AGG - chr4.4:21496584-21496603 None:intergenic 40.0%
TTCCTTCAACCGAGAAAGTA+AGG + chr4.4:21498022-21498041 MS.gene053592:intron 40.0%
! CACATCCTTTTGCTTCTCTA+GGG - chr4.4:21497764-21497783 None:intergenic 40.0%
! GGTGGCATTTAGAGTACTTA+AGG + chr4.4:21497091-21497110 MS.gene053592:intron 40.0%
! GTTCTGATAGGTTCTTTTGC+AGG - chr4.4:21498462-21498481 None:intergenic 40.0%
! TGTTCCTTTAGTTTCCACTG+TGG - chr4.4:21497560-21497579 None:intergenic 40.0%
!!! GCTGATGATGCATTTTGACT+TGG - chr4.4:21497538-21497557 None:intergenic 40.0%
!!! TTTTGACTTGGCCCAATTTC+AGG - chr4.4:21497526-21497545 None:intergenic 40.0%
AAACCTTGATTTCCCACCTG+AGG + chr4.4:21498383-21498402 MS.gene053592:CDS 45.0%
AAATGCATCATCAGCCACAG+TGG + chr4.4:21497543-21497562 MS.gene053592:CDS 45.0%
AACCTTGATTTCCCACCTGA+GGG + chr4.4:21498384-21498403 MS.gene053592:CDS 45.0%
AAGCCGAGGCCCAATATAAT+TGG - chr4.4:21497438-21497457 None:intergenic 45.0%
AAGGAGACACAGGGAAACTA+TGG + chr4.4:21498408-21498427 MS.gene053592:CDS 45.0%
ACCTACCCTAGAGAAGCAAA+AGG + chr4.4:21497756-21497775 MS.gene053592:CDS 45.0%
ACTTGAGTTCCCACCTTACT+GGG + chr4.4:21497689-21497708 MS.gene053592:CDS 45.0%
AGCCTTACTTTCTCGGTTGA+AGG - chr4.4:21498027-21498046 None:intergenic 45.0%
CATCTTCTGCCTCATCATAC+CGG + chr4.4:21496608-21496627 MS.gene053592:CDS 45.0%
CCTAGAGAAGCAAAAGGATG+TGG + chr4.4:21497762-21497781 MS.gene053592:CDS 45.0%
CTGTCTCTGCACAAGATGTT+TGG - chr4.4:21497118-21497137 None:intergenic 45.0%
GACACTTTCAGCAGTTCCTT+TGG - chr4.4:21498266-21498285 None:intergenic 45.0%
GAGAAGCAAAAGGATGTGGA+AGG + chr4.4:21497766-21497785 MS.gene053592:CDS 45.0%
GTTCAAAGTCCGGTATGATG+AGG - chr4.4:21496620-21496639 None:intergenic 45.0%
TAACCTCCATGTGACGATGT+GGG - chr4.4:21496685-21496704 None:intergenic 45.0%
TCAGCCACAGTGGAAACTAA+AGG + chr4.4:21497553-21497572 MS.gene053592:CDS 45.0%
TCCATATCAGGTTTCACCTC+TGG + chr4.4:21496565-21496584 MS.gene053592:intron 45.0%
TCCTCAGAGTTCTACACAGA+AGG + chr4.4:21498306-21498325 MS.gene053592:CDS 45.0%
TTAACCTCCATGTGACGATG+TGG - chr4.4:21496686-21496705 None:intergenic 45.0%
TTCCTGCAACCAAGCAAGTA+AGG + chr4.4:21497208-21497227 MS.gene053592:intron 45.0%
TTCTACCTTTCCCAGTCTCA+TGG + chr4.4:21497889-21497908 MS.gene053592:intron 45.0%
! CCACATCCTTTTGCTTCTCT+AGG - chr4.4:21497765-21497784 None:intergenic 45.0%
! GATAGGTTCTTTTGCAGGGT+AGG - chr4.4:21498457-21498476 None:intergenic 45.0%
!! AGTTCTTGTTCTGGGGTGTT+TGG + chr4.4:21495895-21495914 MS.gene053592:intron 45.0%
!!! TCCTTTTGCTTCTCTAGGGT+AGG - chr4.4:21497760-21497779 None:intergenic 45.0%
!!! TTTTTTTTTTTATATGATTA+CGG + chr4.4:21495970-21495989 MS.gene053592:intron 5.0%
AACCTCCATGTGACGATGTG+GGG - chr4.4:21496684-21496703 None:intergenic 50.0%
AAGTGTCACAGCTTGTGGAG+AGG + chr4.4:21498279-21498298 MS.gene053592:intron 50.0%
ACAGCAGAGAATGACAGAGC+TGG + chr4.4:21497577-21497596 MS.gene053592:CDS 50.0%
ACCTTGATTTCCCACCTGAG+GGG + chr4.4:21498385-21498404 MS.gene053592:CDS 50.0%
AGAAGGCAGTGCAGAAAGAG+TGG + chr4.4:21498323-21498342 MS.gene053592:CDS 50.0%
AGCCTTACTTGCTTGGTTGC+AGG - chr4.4:21497213-21497232 None:intergenic 50.0%
CAGGGCATGAAATTCCTTCC+TGG + chr4.4:21496410-21496429 MS.gene053592:intron 50.0%
CTCTGTGTTTCCTCCCAGTA+AGG - chr4.4:21497705-21497724 None:intergenic 50.0%
GACTTGAGTTCCCACCTTAC+TGG + chr4.4:21497688-21497707 MS.gene053592:CDS 50.0%
GCCAGAGGTGAAACCTGATA+TGG - chr4.4:21496569-21496588 None:intergenic 50.0%
GCCTTCTGTGTAGAACTCTG+AGG - chr4.4:21498310-21498329 None:intergenic 50.0%
GGATACACCAGAGCAACAAG+TGG - chr4.4:21495869-21495888 None:intergenic 50.0%
GGCCCAATTTCAGGAATGAC+AGG - chr4.4:21497517-21497536 None:intergenic 50.0%
GTGTTTCCTCCCAGTAAGGT+GGG - chr4.4:21497701-21497720 None:intergenic 50.0%
TCCACAGGGTTGTACACAGA+AGG + chr4.4:21497609-21497628 MS.gene053592:CDS 50.0%
TCCTTCTGTGTACAACCCTG+TGG - chr4.4:21497613-21497632 None:intergenic 50.0%
TGAAACCCCACATCGTCACA+TGG + chr4.4:21496676-21496695 MS.gene053592:CDS 50.0%
TGGAGTTGAGGCATGCTTAG+AGG + chr4.4:21498097-21498116 MS.gene053592:intron 50.0%
TGTCACCATGAGACTGGGAA+AGG - chr4.4:21497897-21497916 None:intergenic 50.0%
TGTGACGATGTGGGGTTTCA+TGG - chr4.4:21496676-21496695 None:intergenic 50.0%
TGTGTTTCCTCCCAGTAAGG+TGG - chr4.4:21497702-21497721 None:intergenic 50.0%
TTCATGCAACTTGCAAGCCG+AGG - chr4.4:21497452-21497471 None:intergenic 50.0%
! TTCTAGGCCACTTGTTGCTC+TGG + chr4.4:21495859-21495878 MS.gene053592:intron 50.0%
!! GCTGAAAGTGTCACAGCTTG+TGG + chr4.4:21498274-21498293 MS.gene053592:intron 50.0%
AACCCCACATCGTCACATGG+AGG + chr4.4:21496679-21496698 MS.gene053592:CDS 55.0%
ACAGCAAAGGATCGGCATCC+AGG - chr4.4:21496431-21496450 None:intergenic 55.0%
ACTCGTGCAGACAAGGGAGA+GGG - chr4.4:21497355-21497374 None:intergenic 55.0%
AGCTGGTGGAGAGTTTCCAC+AGG + chr4.4:21497594-21497613 MS.gene053592:CDS 55.0%
CAAAGGATCGGCATCCAGGA+AGG - chr4.4:21496427-21496446 None:intergenic 55.0%
GCAGAGAATGACAGAGCTGG+TGG + chr4.4:21497580-21497599 MS.gene053592:CDS 55.0%
GCTGGTGGAGAGTTTCCACA+GGG + chr4.4:21497595-21497614 MS.gene053592:CDS 55.0%
TACTCGTGCAGACAAGGGAG+AGG - chr4.4:21497356-21497375 None:intergenic 55.0%
TCCCCTCAGGTGGGAAATCA+AGG - chr4.4:21498389-21498408 None:intergenic 55.0%
TGAGTTCCCACCTTACTGGG+AGG + chr4.4:21497692-21497711 MS.gene053592:CDS 55.0%
TGATTTCCCACCTGAGGGGA+AGG + chr4.4:21498389-21498408 MS.gene053592:CDS 55.0%
TGTCACAGCTTGTGGAGAGG+AGG + chr4.4:21498282-21498301 MS.gene053592:CDS 55.0%
ACCTGAGGGGAAGGAGACAC+AGG + chr4.4:21498398-21498417 MS.gene053592:CDS 60.0%
CCTGAGGGGAAGGAGACACA+GGG + chr4.4:21498399-21498418 MS.gene053592:CDS 60.0%
GTGTCTCCTTCCCCTCAGGT+GGG - chr4.4:21498398-21498417 None:intergenic 60.0%
TGTGTCTCCTTCCCCTCAGG+TGG - chr4.4:21498399-21498418 None:intergenic 60.0%
CCCTGTGTCTCCTTCCCCTC+AGG - chr4.4:21498402-21498421 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 21495645 21498488 21495645 ID=MS.gene053592
chr4.4 mRNA 21495645 21498488 21495645 ID=MS.gene053592.t1;Parent=MS.gene053592
chr4.4 exon 21495645 21495700 21495645 ID=MS.gene053592.t1.exon1;Parent=MS.gene053592.t1
chr4.4 CDS 21495645 21495700 21495645 ID=cds.MS.gene053592.t1;Parent=MS.gene053592.t1
chr4.4 exon 21495865 21495891 21495865 ID=MS.gene053592.t1.exon2;Parent=MS.gene053592.t1
chr4.4 CDS 21495865 21495891 21495865 ID=cds.MS.gene053592.t1;Parent=MS.gene053592.t1
chr4.4 exon 21496002 21496124 21496002 ID=MS.gene053592.t1.exon3;Parent=MS.gene053592.t1
chr4.4 CDS 21496002 21496124 21496002 ID=cds.MS.gene053592.t1;Parent=MS.gene053592.t1
chr4.4 exon 21496575 21496815 21496575 ID=MS.gene053592.t1.exon4;Parent=MS.gene053592.t1
chr4.4 CDS 21496575 21496815 21496575 ID=cds.MS.gene053592.t1;Parent=MS.gene053592.t1
chr4.4 exon 21497132 21497224 21497132 ID=MS.gene053592.t1.exon5;Parent=MS.gene053592.t1
chr4.4 CDS 21497132 21497224 21497132 ID=cds.MS.gene053592.t1;Parent=MS.gene053592.t1
chr4.4 exon 21497508 21497831 21497508 ID=MS.gene053592.t1.exon6;Parent=MS.gene053592.t1
chr4.4 CDS 21497508 21497831 21497508 ID=cds.MS.gene053592.t1;Parent=MS.gene053592.t1
chr4.4 exon 21497952 21498038 21497952 ID=MS.gene053592.t1.exon7;Parent=MS.gene053592.t1
chr4.4 CDS 21497952 21498038 21497952 ID=cds.MS.gene053592.t1;Parent=MS.gene053592.t1
chr4.4 exon 21498282 21498488 21498282 ID=MS.gene053592.t1.exon8;Parent=MS.gene053592.t1
chr4.4 CDS 21498282 21498488 21498282 ID=cds.MS.gene053592.t1;Parent=MS.gene053592.t1
Gene Sequence

>MS.gene053592

ATGGCTTCTTCATTGCTTCTCAAACTTGCTTTCAAATGCATTCATCATTTTGCATGGTATGTAAATGCATTTCCCTCGTTTCTTGCTCATCTATATCATTTTTTTCACATTCTATTTTTCTAGAAAAAAACAACTTATCTTTTCACATGCATCTTCCTTCACATTATTACTTGCATGCTAATCAAACATCAACCTTCTTTTATTTCCTTCTATTTTCTAGGCCACTTGTTGCTCTGGTGTATCCTATGTAAGTTCTTGTTCTGGGGTGTTTGGTGTATTGAAAAAGTTACTACCTTTTACATTATTATTTTGTATAATGCTCCTCTTTTTTTTTTTATATGATTACGGTTTGGACAGGTGTGCTTCTGTACTAGCAATCGAGACCGATTCCTATGCAGAAACTAAGGATTTGATCTCATATTGGATACTTCTTTCCTTAATTTACCTCTTTGAATATGCTTTTATGAGCCTTCTTCTATGGTAAATTCTTTGCCCTCAAATATGGTAACAGCCTTGTTTTTTTACAACAAGTAGTATGCATGATAGTGAGTTTGGCAAAATGATGTTGTTGTTTTGTTGATACTTCAATGTGTAGTTTTTGTGCTAAAATAAGGTGGCATACAATGATTCTGCTAAACTCATTAGCAATCTAAACTTGTTCTAAGAATTGAGCAAGTTGATTTTTTTCCACTTAGAATTAGTACCTCATTGAAGTTAAGATTAATCAATGCACTTTTAATGTACCAAATTCTTAATAGAGATTATCAGGGCATGAAATTCCTTCCTGGATGCCGATCCTTTGCTGTATAAGAAAATAAATAAGGCTATTTTATTCAATGGAAAGAAATGTTGCAAATGACTTCTTTTTTATTTTTTTAGAAACCAATTCATGCAGTTGTTTAACTACTTCATTCCCATGTTCCATATCAGGTTTCACCTCTGGCTGTACATTAAGCTAATGGTCATCTTCTGCCTCATCATACCGGACTTTGAACGAGCTTCTTATGTTTATAATAAACTTATTCTCACCATGAAACCCCACATCGTCACATGGAGGTTAAATGACTACTGGATGAAGTGTTTTGTTGAGAAAGATAACTTTCTAATGCATGCAGAGAGATATATTTCAGAAAATGGAACTGAAGCCTTAGAGAAAGTCATTGCCAACAAGGTAATTACAAGATTTACTGCCAAAAAAGCCCAAATACTAAAACTTAAGAAGAATTATATAGGGCAGCATTACTGTATCTGATATGTCTCTATATCTGCATTAGCAATTGAAAATTTTAGCTAACTTTTCTTTTATCCTATTAAAGAACACAATGTGTAACCCTGATGCAGAAGTGAGAAATGAAATCATAGCTAATGATGATAAAGATATGCTAATGGTAAAATTTTGATGTTACAAGTTTTTGTATGAGTTAATTCTAACTATACGAGTGTCATGGTGGCATTTAGAGTACTTAAGGACCAAACATCTTGTGCAGAGACAGACAAATGACGAAAGACACGAAACAGAGAACAAAGACATCATAGATTTGGAAGCTATTGAGAAAAAAGAAATTCCTGCAACCAAGCAAGTAAGGCTTCATTCACATTCACTCAAAAATAGAAATTTCCCAAAGACATTAAAATTTTCGACTTTTGGCATGCTAAGAAGTTATTGGTGAAACGATTAGGCCTTGTATACATCTTCAGATTGAATTACCCTCTCCCTTGTCTGCACGAGTAATACTAATAAGTAATAACCACAGTTATATGTTCAAAATGTTTAAAAAATGTGTATTCTTCCAATTATATTGGGCCTCGGCTTGCAAGTTGCATGAAATATTTGGCCTTGATGCAAATATTTGGATGTTTCAGGATATTCCTGTCATTCCTGAAATTGGGCCAAGTCAAAATGCATCATCAGCCACAGTGGAAACTAAAGGAACAGCAGAGAATGACAGAGCTGGTGGAGAGTTTCCACAGGGTTGTACACAGAAGGAAATGCAGAAAAGGTGGACTTGTGCTTTATGTTTGGTAACAACTACAAGCAAAAAAGACTTGAGTTCCCACCTTACTGGGAGGAAACACAGAGATAATATTGAAGCTTTAATAGCAAAGAAGCAACCTACCCTAGAGAAGCAAAAGGATGTGGAAGGGACAAATGAAATCATAGCTACTGATAATAAAGAAATACTAAAGGTAGAGTTTTGATGTTAAGTCAGTTGTGACATTAAATATAGTTCTTGTATGAGTCTATTCTACCTTTCCCAGTCTCATGGTGACATATTTCAAGTGATTAATGAGTTTCTTCTTGTGCAGACAAATGGAGAAAGACTCGAATCAGAGAACAAAGACATCAAAGATTTGGAGGCTATTGAGAAAAAGGAATTTCCTTCAACCGAGAAAGTAAGGCTTCATACATATATTCACTAAATCTAAATCTCCCTAAAACAAATTAGAATTGTGGAGTTGAGGCATGCTTAGAGGTCATTTGTGAAAGGTTTAGGCTTACTAGTATATATATGAATTTTGTGGACGTGGTCATGATTTTTATTGTCATTGTTGTTGGTGCTAGAGAACCTATGCTAATATTGTGGCAAGTTAAACGGCATCATCAGCCGTAATAGAAACCAAAGGAACTGCTGAAAGTGTCACAGCTTGTGGAGAGGAGGTTCCTCAGAGTTCTACACAGAAGGCAGTGCAGAAAGAGTGGACTTGTGCTTTATGTTTGGTAACGGTTACGTGCGAGAAAACCTTGATTTCCCACCTGAGGGGAAGGAGACACAGGGAAACTATGGAAGCATTAAAAGCAAAGAAGCAACCTACCCTGCAAAAGAACCTATCAGAACCTATTAG

Protein sequence

>MS.gene053592.t1

MASSLLLKLAFKCIHHFAWPLVALVYPMCASVLAIETDSYAETKDLISYWILLSLIYLFEYAFMSLLLWFHLWLYIKLMVIFCLIIPDFERASYVYNKLILTMKPHIVTWRLNDYWMKCFVEKDNFLMHAERYISENGTEALEKVIANKRQTNDERHETENKDIIDLEAIEKKEIPATKQDIPVIPEIGPSQNASSATVETKGTAENDRAGGEFPQGCTQKEMQKRWTCALCLVTTTSKKDLSSHLTGRKHRDNIEALIAKKQPTLEKQKDVEGTNEIIATDNKEILKTNGERLESENKDIKDLEAIEKKEFPSTEKCHSLWRGGSSEFYTEGSAERVDLCFMFGNGYVRENLDFPPEGKETQGNYGSIKSKEATYPAKEPIRTY