AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86933

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86933.t1 MTR_1g106070 89.617 183 19 0 1 183 1 183 1.50e-120 338
MS.gene86933.t1 MTR_1g105920 87.363 182 23 0 1 182 1 182 3.87e-117 332
MS.gene86933.t1 MTR_3g052920 83.516 182 30 0 1 182 1 182 4.00e-114 324
MS.gene86933.t1 MTR_8g043650 84.066 182 29 0 1 182 1 182 3.93e-112 319
MS.gene86933.t1 MTR_1g105910 83.516 182 30 0 1 182 1 182 1.38e-111 318
MS.gene86933.t1 MTR_2g030740 84.066 182 29 0 1 182 1 182 4.19e-111 317
MS.gene86933.t1 MTR_1g012570 82.967 182 31 0 1 182 1 182 4.51e-110 314
MS.gene86933.t1 MTR_3g052870 75.824 182 25 1 1 182 1 163 4.41e-93 270
MS.gene86933.t1 MTR_1g105905 76.970 165 38 0 18 182 1 165 1.47e-91 266
MS.gene86933.t1 MTR_3g030770 72.527 182 42 1 1 182 1 174 6.30e-90 263
MS.gene86933.t1 MTR_1g108510 71.978 182 43 1 1 182 1 174 6.65e-90 262
MS.gene86933.t1 MTR_2g093190 70.330 182 46 1 1 182 1 174 1.09e-85 252
MS.gene86933.t1 MTR_1g077360 66.484 182 61 0 1 182 1 182 2.30e-85 251
MS.gene86933.t1 MTR_1g108580 69.231 182 48 1 1 182 1 174 7.56e-85 249
MS.gene86933.t1 MTR_5g045560 65.746 181 62 0 1 181 1 181 3.79e-83 246
MS.gene86933.t1 MTR_1g075600 65.934 182 62 0 1 182 1 182 7.31e-83 245
MS.gene86933.t1 MTR_0121s0080 67.582 182 59 0 1 182 1 182 5.96e-82 243
MS.gene86933.t1 MTR_5g055100 62.637 182 68 0 1 182 1 182 1.72e-81 241
MS.gene86933.t1 MTR_2g085280 62.637 182 68 0 1 182 1 182 1.89e-79 236
MS.gene86933.t1 MTR_2g085250 62.637 182 68 0 1 182 1 182 1.93e-79 236
MS.gene86933.t1 MTR_5g053390 64.835 182 64 0 1 182 1 182 1.07e-78 234
MS.gene86933.t1 MTR_7g062350 64.072 167 59 1 16 181 27 193 2.89e-69 211
MS.gene86933.t1 MTR_0121s0100 70.769 130 38 0 1 130 1 130 8.21e-63 190
MS.gene86933.t1 MTR_3g030780 69.767 129 39 0 1 129 1 129 9.73e-60 182
MS.gene86933.t1 MTR_3g080940 51.807 166 80 0 7 172 7 172 7.10e-59 183
MS.gene86933.t1 MTR_1g075570 56.970 165 57 1 18 182 1 151 1.86e-52 165
MS.gene86933.t1 MTR_3g067910 61.165 103 40 0 21 123 2 104 5.87e-41 134
MS.gene86933.t1 MTR_2g105290 36.905 168 102 1 5 172 8 171 9.59e-37 125
MS.gene86933.t1 MTR_8g086290 37.952 166 93 2 5 167 8 166 4.13e-35 121
MS.gene86933.t1 MTR_7g028448 40.000 155 81 2 5 159 8 150 2.81e-30 108
MS.gene86933.t1 MTR_4g036915 40.000 155 81 2 5 159 8 150 2.81e-30 108
MS.gene86933.t1 MTR_1g108500 60.825 97 17 1 22 118 110 185 3.73e-30 112
MS.gene86933.t1 MTR_4g127140 35.754 179 99 3 5 172 8 181 3.74e-28 104
MS.gene86933.t1 MTR_3g067875 80.357 56 11 0 18 73 1 56 6.49e-27 97.4
MS.gene86933.t1 MTR_1g047550 41.667 144 66 5 9 136 2 143 3.97e-25 96.3
MS.gene86933.t1 MTR_8g079502 57.746 71 30 0 9 79 2 72 1.64e-24 94.7
MS.gene86933.t1 MTR_3g067870 69.841 63 19 0 16 78 83 145 3.47e-24 93.2
MS.gene86933.t1 MTR_8g051580 44.554 101 54 1 9 109 2 100 3.58e-24 93.6
MS.gene86933.t1 MTR_8g046350 38.636 132 69 3 9 135 2 126 6.84e-24 92.4
MS.gene86933.t1 MTR_1g054265 43.243 111 60 2 9 118 2 110 9.84e-24 92.4
MS.gene86933.t1 MTR_1g063160 51.948 77 37 0 9 85 2 78 1.02e-23 92.4
MS.gene86933.t1 MTR_4g131030 52.055 73 35 0 9 81 2 74 6.36e-23 91.3
MS.gene86933.t1 MTR_4g094632 35.338 133 74 3 9 131 2 132 7.10e-21 84.7
MS.gene86933.t1 MTR_3g067915 56.716 67 29 0 60 126 30 96 1.17e-19 79.7
MS.gene86933.t1 MTR_4g093970 33.333 162 90 4 10 160 29 183 2.94e-19 82.4
MS.gene86933.t1 MTR_1g053070 49.367 79 40 0 9 87 2 80 1.79e-18 80.5
MS.gene86933.t1 MTR_4g102530 48.611 72 37 0 10 81 3 74 1.03e-17 77.4
MS.gene86933.t1 MTR_3g452380 43.182 88 50 0 3 90 11 98 1.20e-17 78.2
MS.gene86933.t1 MTR_8g033220 33.728 169 95 6 10 166 3 166 1.37e-17 77.4
MS.gene86933.t1 MTR_8g033220 33.728 169 95 6 10 166 3 166 1.54e-17 77.4
MS.gene86933.t1 MTR_5g032520 35.556 135 75 3 10 134 3 135 1.60e-17 77.4
MS.gene86933.t1 MTR_5g032150 34.559 136 77 3 9 134 2 135 2.29e-17 77.0
MS.gene86933.t1 MTR_4g094638 50.725 69 34 0 9 77 2 70 2.88e-17 75.5
MS.gene86933.t1 MTR_2g017865 40.385 104 61 1 9 112 17 119 6.05e-17 76.3
MS.gene86933.t1 MTR_3g005530 47.059 68 36 0 9 76 2 69 6.07e-17 75.9
MS.gene86933.t1 MTR_8g087860 48.529 68 35 0 9 76 18 85 4.90e-16 73.6
MS.gene86933.t1 MTR_5g066180 47.059 68 36 0 9 76 2 69 6.66e-16 73.2
MS.gene86933.t1 MTR_4g109830 44.928 69 37 1 9 76 2 70 7.72e-16 72.8
MS.gene86933.t1 MTR_7g075870 47.761 67 35 0 10 76 3 69 8.97e-16 72.4
MS.gene86933.t1 MTR_8g033270 44.304 79 42 1 9 85 2 80 9.66e-16 73.2
MS.gene86933.t1 MTR_2g009890 47.059 68 36 0 9 76 2 69 1.36e-15 73.2
MS.gene86933.t1 MTR_0003s0590 48.529 68 35 0 9 76 2 69 2.66e-15 72.0
MS.gene86933.t1 MTR_3g102570 43.210 81 44 2 9 88 2 81 2.93e-15 72.4
MS.gene86933.t1 MTR_1g101970 45.588 68 37 0 9 76 2 69 6.77e-15 69.7
MS.gene86933.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 6.99e-15 70.5
MS.gene86933.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 7.20e-15 70.1
MS.gene86933.t1 MTR_6g464720 44.928 69 37 1 9 76 2 70 8.14e-15 70.5
MS.gene86933.t1 MTR_7g075870 48.529 68 34 1 10 76 3 70 1.10e-14 69.7
MS.gene86933.t1 MTR_6g015975 46.377 69 36 1 9 76 2 70 1.17e-14 70.1
MS.gene86933.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 1.31e-14 70.1
MS.gene86933.t1 MTR_5g046790 43.662 71 37 1 9 79 2 69 1.79e-14 68.9
MS.gene86933.t1 MTR_4g084740 40.964 83 47 2 9 90 2 83 3.44e-14 69.7
MS.gene86933.t1 MTR_8g066260 44.928 69 37 1 9 76 2 70 3.90e-14 68.6
MS.gene86933.t1 MTR_2g461710 51.786 56 27 0 9 64 2 57 6.86e-14 63.5
MS.gene86933.t1 MTR_1g029670 46.970 66 34 1 9 74 2 66 7.75e-14 66.6
MS.gene86933.t1 MTR_5g021270 45.714 70 36 1 9 76 2 71 8.37e-14 67.4
MS.gene86933.t1 MTR_5g021270 45.714 70 36 1 9 76 2 71 8.69e-14 67.4
MS.gene86933.t1 MTR_3g088615 42.857 70 38 1 9 76 2 71 1.00e-13 66.2
MS.gene86933.t1 MTR_5g046870 44.928 69 37 1 9 76 2 70 1.24e-13 64.3
MS.gene86933.t1 MTR_4g036050 30.435 138 84 5 9 136 2 137 1.58e-13 65.5
MS.gene86933.t1 MTR_1g038300 45.714 70 36 1 9 76 2 71 1.62e-13 66.6
MS.gene86933.t1 MTR_4g036050 30.000 160 99 6 9 158 2 158 1.68e-13 65.9
MS.gene86933.t1 MTR_4g036050 30.435 138 84 5 9 136 2 137 2.00e-13 65.9
MS.gene86933.t1 MTR_7g016600 44.928 69 37 1 9 76 2 70 2.09e-13 66.6
MS.gene86933.t1 MTR_4g036050 30.435 138 84 5 9 136 2 137 2.49e-13 65.9
MS.gene86933.t1 MTR_5g066960 44.068 59 33 0 9 67 2 60 2.66e-13 62.0
MS.gene86933.t1 MTR_8g022970 30.818 159 95 3 8 159 17 167 5.75e-13 64.3
MS.gene86933.t1 MTR_3g113030 42.857 70 38 1 9 76 2 71 1.32e-12 64.3
MS.gene86933.t1 MTR_7g075850 28.488 172 100 5 9 167 2 163 1.52e-12 64.3
MS.gene86933.t1 MTR_8g097090 43.478 69 38 1 9 76 2 70 1.58e-12 63.9
MS.gene86933.t1 MTR_3g084980 44.928 69 37 1 9 76 2 70 1.68e-12 63.9
MS.gene86933.t1 MTR_4g109810 45.000 60 33 0 9 68 2 61 3.20e-12 63.2
MS.gene86933.t1 MTR_4g051538 43.902 82 46 0 1 82 1 82 4.05e-12 62.8
MS.gene86933.t1 MTR_3g109930 29.286 140 83 4 27 159 20 150 7.55e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86933.t1 AT5G60440 53.714 175 78 2 5 176 3 177 5.36e-56 179
MS.gene86933.t1 AT2G24840 48.466 163 75 4 6 163 60 218 2.58e-43 145
MS.gene86933.t1 AT1G65360 39.306 173 100 3 5 175 3 172 1.18e-36 127
MS.gene86933.t1 AT4G36590 45.455 165 78 5 5 160 3 164 2.52e-36 127
MS.gene86933.t1 AT1G01530 42.500 160 89 2 4 162 2 159 2.23e-35 124
MS.gene86933.t1 AT2G34440 41.026 117 60 2 9 121 2 113 1.02e-24 95.1
MS.gene86933.t1 AT3G66656 40.336 119 67 1 9 123 2 120 1.49e-23 92.0
MS.gene86933.t1 AT3G04100 30.675 163 107 3 2 159 7 168 1.64e-22 90.1
MS.gene86933.t1 AT1G72350 52.055 73 33 1 9 81 43 113 6.46e-21 86.3
MS.gene86933.t1 AT1G28460 31.214 173 109 3 5 174 4 169 5.93e-20 82.8
MS.gene86933.t1 AT4G22950 40.000 110 63 1 10 119 3 109 2.07e-19 81.3
MS.gene86933.t1 AT4G22950 40.000 110 63 1 10 119 3 109 6.98e-19 80.9
MS.gene86933.t1 AT4G22950 40.000 110 63 1 10 119 3 109 6.98e-19 80.9
MS.gene86933.t1 AT1G29962 29.651 172 114 3 5 169 4 175 1.73e-18 79.0
MS.gene86933.t1 AT2G45660 48.529 68 35 0 10 77 3 70 2.02e-17 75.5
MS.gene86933.t1 AT4G24540 36.486 148 77 5 9 156 2 132 2.30e-17 77.0
MS.gene86933.t1 AT2G45650 48.529 68 35 0 9 76 2 69 3.32e-17 77.0
MS.gene86933.t1 AT4G18960 43.956 91 49 2 5 94 15 104 4.57e-17 76.6
MS.gene86933.t1 AT2G22540 50.000 68 34 0 9 76 2 69 6.43e-17 75.9
MS.gene86933.t1 AT2G22540 50.000 68 34 0 9 76 2 69 6.43e-17 75.9
MS.gene86933.t1 AT3G57230 45.588 68 37 0 9 76 2 69 7.05e-17 73.9
MS.gene86933.t1 AT2G45660 48.529 68 35 0 10 77 3 70 7.16e-17 75.5
MS.gene86933.t1 AT4G09960 41.860 86 49 1 9 93 2 87 1.06e-16 75.1
MS.gene86933.t1 AT4G09960 41.860 86 49 1 9 93 2 87 1.17e-16 75.1
MS.gene86933.t1 AT4G09960 41.860 86 49 1 9 93 3 88 1.23e-16 75.1
MS.gene86933.t1 AT4G09960 41.860 86 49 1 9 93 12 97 1.63e-16 75.1
MS.gene86933.t1 AT4G09960 41.860 86 49 1 9 93 28 113 1.82e-16 75.1
MS.gene86933.t1 AT4G09960 41.860 86 49 1 9 93 97 182 2.69e-16 75.5
MS.gene86933.t1 AT2G42830 48.529 68 35 0 9 76 17 84 3.50e-16 74.3
MS.gene86933.t1 AT2G42830 48.529 68 35 0 9 76 17 84 3.60e-16 74.3
MS.gene86933.t1 AT3G61120 48.529 68 35 0 9 76 2 69 3.73e-16 73.9
MS.gene86933.t1 AT4G37940 47.059 68 36 0 9 76 2 69 4.28e-16 73.6
MS.gene86933.t1 AT3G57230 45.588 68 37 0 9 76 2 69 4.33e-16 73.9
MS.gene86933.t1 AT3G57230 45.588 68 37 0 9 76 2 69 4.33e-16 73.9
MS.gene86933.t1 AT4G37940 47.059 68 36 0 9 76 2 69 4.36e-16 73.6
MS.gene86933.t1 AT4G37940 47.059 68 36 0 9 76 2 69 5.39e-16 72.4
MS.gene86933.t1 AT4G11880 47.222 72 37 1 10 80 3 74 5.42e-16 72.4
MS.gene86933.t1 AT4G11880 47.222 72 37 1 10 80 3 74 5.42e-16 72.4
MS.gene86933.t1 AT5G51870 50.746 67 33 0 10 76 3 69 5.57e-16 72.0
MS.gene86933.t1 AT5G51870 50.746 67 33 0 10 76 3 69 6.00e-16 72.8
MS.gene86933.t1 AT3G58780 47.887 71 37 0 6 76 14 84 6.45e-16 73.6
MS.gene86933.t1 AT3G57390 47.059 68 36 0 9 76 2 69 6.90e-16 73.2
MS.gene86933.t1 AT3G58780 47.887 71 37 0 6 76 20 90 7.98e-16 73.2
MS.gene86933.t1 AT5G51870 50.746 67 33 0 10 76 3 69 9.49e-16 72.4
MS.gene86933.t1 AT5G51870 50.746 67 33 0 10 76 13 79 9.70e-16 72.8
MS.gene86933.t1 AT4G11880 47.222 72 37 1 10 80 3 74 1.01e-15 72.4
MS.gene86933.t1 AT4G11880 47.222 72 37 1 10 80 3 74 1.01e-15 72.4
MS.gene86933.t1 AT3G30260 46.377 69 36 1 9 76 2 70 1.13e-15 72.8
MS.gene86933.t1 AT3G58780 47.887 71 37 0 6 76 14 84 1.14e-15 73.2
MS.gene86933.t1 AT5G51870 47.222 72 38 0 5 76 21 92 1.16e-15 72.0
MS.gene86933.t1 AT3G57390 47.059 68 36 0 9 76 2 69 1.44e-15 72.8
MS.gene86933.t1 AT5G13790 40.860 93 46 1 9 101 2 85 1.86e-15 72.4
MS.gene86933.t1 AT1G28450 28.402 169 111 4 5 163 4 172 1.93e-15 70.9
MS.gene86933.t1 AT1G17310 50.633 79 37 1 8 86 47 123 1.94e-15 71.6
MS.gene86933.t1 AT1G17310 50.633 79 37 1 8 86 58 134 2.05e-15 71.6
MS.gene86933.t1 AT5G13790 48.529 68 35 0 9 76 2 69 2.34e-15 72.4
MS.gene86933.t1 AT2G22630 45.588 68 37 0 9 76 2 69 2.78e-15 71.2
MS.gene86933.t1 AT2G22630 45.588 68 37 0 9 76 2 69 2.78e-15 71.2
MS.gene86933.t1 AT5G62165 46.269 67 36 0 10 76 3 69 2.85e-15 70.1
MS.gene86933.t1 AT5G62165 46.269 67 36 0 10 76 3 69 2.85e-15 70.1
MS.gene86933.t1 AT5G62165 46.269 67 36 0 10 76 3 69 2.85e-15 70.1
MS.gene86933.t1 AT5G62165 46.269 67 36 0 10 76 3 69 3.04e-15 68.6
MS.gene86933.t1 AT5G10140 47.826 69 35 1 9 76 2 70 3.94e-15 69.7
MS.gene86933.t1 AT5G62165 46.269 67 36 0 10 76 3 69 4.29e-15 69.3
MS.gene86933.t1 AT5G62165 46.269 67 36 0 10 76 3 69 4.29e-15 69.3
MS.gene86933.t1 AT5G62165 46.269 67 36 0 10 76 3 69 4.29e-15 69.3
MS.gene86933.t1 AT5G62165 46.269 67 36 0 10 76 3 69 4.29e-15 69.3
MS.gene86933.t1 AT5G62165 46.269 67 36 0 10 76 3 69 4.29e-15 69.3
MS.gene86933.t1 AT5G60910 47.887 71 34 1 9 79 2 69 4.71e-15 71.2
MS.gene86933.t1 AT5G10140 47.826 69 35 1 9 76 2 70 6.24e-15 69.7
MS.gene86933.t1 AT5G10140 47.826 69 35 1 9 76 2 70 7.00e-15 69.7
MS.gene86933.t1 AT5G10140 47.826 69 35 1 9 76 2 70 7.24e-15 69.7
MS.gene86933.t1 AT5G51860 49.254 67 34 0 10 76 3 69 8.36e-15 69.7
MS.gene86933.t1 AT5G62165 46.269 67 36 0 10 76 3 69 8.46e-15 69.7
MS.gene86933.t1 AT5G62165 46.269 67 36 0 10 76 3 69 8.46e-15 69.7
MS.gene86933.t1 AT5G62165 46.269 67 36 0 10 76 3 69 9.15e-15 69.7
MS.gene86933.t1 AT5G62165 46.269 67 36 0 10 76 3 69 9.15e-15 69.7
MS.gene86933.t1 AT5G62165 46.269 67 36 0 10 76 3 69 9.15e-15 69.7
MS.gene86933.t1 AT1G77950 42.105 76 42 2 9 83 2 76 1.13e-14 70.1
MS.gene86933.t1 AT1G77950 42.105 76 42 2 9 83 2 76 1.13e-14 70.1
MS.gene86933.t1 AT1G77950 42.105 76 42 2 9 83 2 76 1.13e-14 70.1
MS.gene86933.t1 AT1G77950 42.105 76 42 2 9 83 2 76 1.13e-14 70.1
MS.gene86933.t1 AT2G14210 44.928 69 37 1 9 76 2 70 1.13e-14 70.1
MS.gene86933.t1 AT5G20240 45.714 70 36 1 9 76 2 71 1.15e-14 68.2
MS.gene86933.t1 AT5G51860 49.254 67 34 0 10 76 3 69 1.17e-14 69.3
MS.gene86933.t1 AT5G20240 45.714 70 36 1 9 76 2 71 1.25e-14 69.3
MS.gene86933.t1 AT2G14210 44.928 69 37 1 9 76 2 70 1.30e-14 69.7
MS.gene86933.t1 AT1G26310 46.377 69 36 1 9 76 2 70 1.35e-14 70.1
MS.gene86933.t1 AT1G77980 45.070 71 38 1 9 78 2 72 1.48e-14 70.9
MS.gene86933.t1 AT1G69120 46.377 69 36 1 9 76 2 70 1.79e-14 69.3
MS.gene86933.t1 AT1G22130 41.463 82 46 2 9 89 2 82 2.59e-14 70.1
MS.gene86933.t1 AT1G71692 43.478 69 38 1 10 77 3 71 3.44e-14 68.2
MS.gene86933.t1 AT1G69120 46.479 71 35 1 9 79 2 69 3.57e-14 68.9
MS.gene86933.t1 AT2G22540 54.545 55 25 0 10 64 3 57 3.79e-14 68.6
MS.gene86933.t1 AT1G47760 40.299 67 40 0 9 75 2 68 6.80e-14 67.0
MS.gene86933.t1 AT5G65080 30.208 192 106 8 9 182 9 190 1.22e-13 66.2
MS.gene86933.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.67e-13 65.9
MS.gene86933.t1 AT5G23260 48.052 77 36 2 5 77 12 88 1.99e-13 67.0
MS.gene86933.t1 AT5G23260 48.052 77 36 2 5 77 12 88 2.36e-13 66.6
MS.gene86933.t1 AT2G03710 44.286 70 37 2 9 76 2 71 2.51e-13 65.5
MS.gene86933.t1 AT5G23260 47.887 71 35 1 9 77 2 72 3.03e-13 66.2
MS.gene86933.t1 AT5G65050 43.478 69 38 1 9 76 2 70 3.52e-13 65.1
MS.gene86933.t1 AT5G15800 44.928 69 37 1 9 76 2 70 3.56e-13 66.2
MS.gene86933.t1 AT5G65050 43.478 69 38 1 9 76 2 70 3.58e-13 65.1
MS.gene86933.t1 AT5G23260 47.887 71 35 1 9 77 2 72 3.58e-13 65.9
MS.gene86933.t1 AT5G65070 42.029 69 39 1 9 76 2 70 3.63e-13 63.9
MS.gene86933.t1 AT3G54340 41.429 70 39 1 9 76 2 71 3.99e-13 65.9
MS.gene86933.t1 AT5G65050 43.478 69 38 1 9 76 2 70 4.33e-13 64.7
MS.gene86933.t1 AT5G15800 44.928 69 37 1 9 76 2 70 5.95e-13 65.5
MS.gene86933.t1 AT3G58780 47.619 63 33 0 6 68 14 76 6.31e-13 65.5
MS.gene86933.t1 AT5G65070 42.029 69 39 1 9 76 2 70 6.70e-13 64.7
MS.gene86933.t1 AT5G65060 43.478 69 38 1 9 76 2 70 7.37e-13 64.3
MS.gene86933.t1 AT5G65060 43.478 69 38 1 9 76 2 70 9.88e-13 63.9
MS.gene86933.t1 AT2G03710 44.286 70 37 2 9 76 2 71 9.94e-13 65.1
MS.gene86933.t1 AT2G03710 44.286 70 37 2 9 76 2 71 1.04e-12 64.7
MS.gene86933.t1 AT3G58780 47.541 61 32 0 6 66 14 74 1.15e-12 64.7
MS.gene86933.t1 AT5G65060 43.478 69 38 1 9 76 2 70 1.19e-12 63.9
MS.gene86933.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.33e-12 64.3
MS.gene86933.t1 AT1G24260 43.478 69 38 1 9 76 2 70 1.47e-12 64.3
MS.gene86933.t1 AT3G02310 43.478 69 38 1 9 76 2 70 1.52e-12 63.5
MS.gene86933.t1 AT1G24260 43.478 69 38 1 9 76 2 70 1.56e-12 64.3
MS.gene86933.t1 AT1G24260 43.478 69 38 1 9 76 2 70 1.86e-12 63.9
MS.gene86933.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.93e-12 63.5
MS.gene86933.t1 AT3G02310 43.478 69 38 1 9 76 2 70 8.76e-12 62.4
MS.gene86933.t1 AT5G49490 38.462 78 44 1 5 78 41 118 1.34e-11 62.0
MS.gene86933.t1 AT1G69540 35.135 111 62 3 9 117 2 104 1.39e-11 62.4
MS.gene86933.t1 AT2G26320 41.429 70 39 1 9 76 18 87 1.51e-11 58.9
MS.gene86933.t1 AT1G69540 35.135 111 62 3 9 117 2 104 1.74e-11 62.0
MS.gene86933.t1 AT5G65070 45.614 57 31 0 9 65 2 58 1.86e-11 61.2
MS.gene86933.t1 AT1G46408 32.886 149 86 6 10 144 5 153 2.10e-11 61.2
MS.gene86933.t1 AT4G37435 32.632 95 58 2 9 97 2 96 2.24e-11 60.1
MS.gene86933.t1 AT5G49420 36.667 90 50 2 5 87 3 92 6.52e-11 60.5
MS.gene86933.t1 AT1G18750 33.696 92 58 2 9 97 2 93 7.67e-11 60.5
MS.gene86933.t1 AT1G18750 33.696 92 58 2 9 97 2 93 7.96e-11 60.1
MS.gene86933.t1 AT1G18750 33.696 92 58 2 9 97 2 93 8.24e-11 60.1

Find 51 sgRNAs with CRISPR-Local

Find 56 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGCATGGTACCATTGTTT+TGG 0.299260 1.2:-79064853 None:intergenic
GTCCCGTTGATGGGATGAAC+AGG 0.345518 1.2:+79065020 MS.gene86933:CDS
TGAATTATTCAAGAAGGCTT+TGG 0.346261 1.2:+79065051 MS.gene86933:CDS
TGGTTGGCTGGTCCCGTTGA+TGG 0.347475 1.2:+79065010 MS.gene86933:CDS
GGTGGTTGATCTGAGTTAGA+TGG 0.362826 1.2:-79064919 None:intergenic
CTCTCGTTGTTTACTCACCT+GGG 0.364999 1.2:+79064759 MS.gene86933:CDS
GCTCTCGTTGTTTACTCACC+TGG 0.366410 1.2:+79064758 MS.gene86933:CDS
AACTCAGATCAACCACCTAT+TGG 0.378745 1.2:+79064925 MS.gene86933:CDS
TGCTGATAGGCTTGTAATCC+AGG 0.383576 1.2:+79065102 MS.gene86933:CDS
TTGTTGCACATCATGCTGAT+AGG 0.402994 1.2:+79065089 MS.gene86933:CDS
CTTCTTGAATAATTCAAGTT+GGG 0.442228 1.2:-79065044 None:intergenic
GTTTCTTCTCGATGTCCAAT+AGG 0.442800 1.2:-79064940 None:intergenic
GATCGAGACTCAACTTTGGT+TGG 0.457866 1.2:+79064994 MS.gene86933:CDS
ACTCACGCACGTTGGTGCTA+CGG 0.479694 1.2:-79064889 None:intergenic
CCTTCTTGAATAATTCAAGT+TGG 0.480564 1.2:-79065045 None:intergenic
GGTGCTACGGTGAGCCTCAA+TGG 0.484756 1.2:-79064876 None:intergenic
GGTTGGCTGGTCCCGTTGAT+GGG 0.488279 1.2:+79065011 MS.gene86933:CDS
GCCCTGTTCATCCCATCAAC+GGG 0.488608 1.2:-79065022 None:intergenic
GGCCCTGTTCATCCCATCAA+CGG 0.495905 1.2:-79065023 None:intergenic
CCAACTTGAATTATTCAAGA+AGG 0.499244 1.2:+79065045 MS.gene86933:CDS
GAGACTCAACTTTGGTTGGC+TGG 0.499959 1.2:+79064998 MS.gene86933:CDS
GTGGTTGATCTGAGTTAGAT+GGG 0.506455 1.2:-79064918 None:intergenic
ATTATTCAAGAAGGCTTTGG+AGG 0.515397 1.2:+79065054 MS.gene86933:CDS
ACAGAGGGTGCAAAACTCAC+TGG 0.533996 1.2:-79064723 None:intergenic
TGTTTACTCACCTGGGGAGA+AGG 0.536541 1.2:+79064766 MS.gene86933:CDS
ATCTATGACTGTATCAACAC+TGG 0.540768 1.2:-79064807 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1.2:+79064687 MS.gene86933:CDS
CTTCAATCATGTCGAGTGGA+AGG 0.559861 1.2:+79064600 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1.2:+79064686 MS.gene86933:CDS
TCTTCTCGATGTCCAATAGG+TGG 0.584648 1.2:-79064937 None:intergenic
AATGAAAATACCTTCTCCCC+AGG 0.587583 1.2:-79064776 None:intergenic
TCGAGAAAGTCACTTGCAAG+TGG 0.591713 1.2:-79064673 None:intergenic
TCTATGACTGTATCAACACT+GGG 0.592150 1.2:-79064806 None:intergenic
AGCAACATCTGCACCACAGA+GGG 0.595144 1.2:-79064738 None:intergenic
TCTCGATCGACTTACGCAAG+TGG 0.597492 1.2:-79064979 None:intergenic
TCCCGTTGATGGGATGAACA+GGG 0.598148 1.2:+79065021 MS.gene86933:CDS
GGGTTTGAGTCGGAGCACCC+TGG 0.608427 1.2:-79065120 None:intergenic
AGTCGATCGAGACTCAACTT+TGG 0.610036 1.2:+79064990 MS.gene86933:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1.2:-79064700 None:intergenic
TCTCGTTGTTTACTCACCTG+GGG 0.615216 1.2:+79064760 MS.gene86933:CDS
GTGAGCCTCAATGGATAGCA+TGG 0.621366 1.2:-79064867 None:intergenic
TGGTACCATGCTATCCATTG+AGG 0.624528 1.2:+79064862 MS.gene86933:CDS
AACAGAGGAAGGGTTTGAGT+CGG 0.630945 1.2:-79065130 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 1.2:+79065103 MS.gene86933:CDS
TGTGCTTCAATCATGTCGAG+TGG 0.638522 1.2:+79064596 None:intergenic
CGAGTCCCATCCCAAAACAA+TGG 0.652120 1.2:+79064842 MS.gene86933:CDS
TGACTGTATCAACACTGGGG+TGG 0.658147 1.2:-79064802 None:intergenic
GGTATTAAACTCACGCACGT+TGG 0.673911 1.2:-79064897 None:intergenic
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 1.2:+79064611 MS.gene86933:CDS
GAGCAACATCTGCACCACAG+AGG 0.729838 1.2:-79064739 None:intergenic
CTATGACTGTATCAACACTG+GGG 0.806256 1.2:-79064805 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG - chr1.2:79064640-79064659 None:intergenic 20.0%
!! CTTCTTGAATAATTCAAGTT+GGG - chr1.2:79065047-79065066 None:intergenic 25.0%
CCAACTTGAATTATTCAAGA+AGG + chr1.2:79065045-79065064 MS.gene86933:CDS 30.0%
CCTTCTTGAATAATTCAAGT+TGG - chr1.2:79065048-79065067 None:intergenic 30.0%
TGAATTATTCAAGAAGGCTT+TGG + chr1.2:79065051-79065070 MS.gene86933:CDS 30.0%
ATCTATGACTGTATCAACAC+TGG - chr1.2:79064810-79064829 None:intergenic 35.0%
TCTATGACTGTATCAACACT+GGG - chr1.2:79064809-79064828 None:intergenic 35.0%
! ATAGCATGGTACCATTGTTT+TGG - chr1.2:79064856-79064875 None:intergenic 35.0%
! ATTATTCAAGAAGGCTTTGG+AGG + chr1.2:79065054-79065073 MS.gene86933:CDS 35.0%
! TAGCATGGTACCATTGTTTT+GGG - chr1.2:79064855-79064874 None:intergenic 35.0%
AACTCAGATCAACCACCTAT+TGG + chr1.2:79064925-79064944 MS.gene86933:CDS 40.0%
AATGAAAATACCTTCTCCCC+AGG - chr1.2:79064779-79064798 None:intergenic 40.0%
CTATGACTGTATCAACACTG+GGG - chr1.2:79064808-79064827 None:intergenic 40.0%
GTGGTTGATCTGAGTTAGAT+GGG - chr1.2:79064921-79064940 None:intergenic 40.0%
GTTTCTTCTCGATGTCCAAT+AGG - chr1.2:79064943-79064962 None:intergenic 40.0%
TTGTTGCACATCATGCTGAT+AGG + chr1.2:79065089-79065108 MS.gene86933:CDS 40.0%
!!! ATGGTACCATTGTTTTGGGA+TGG - chr1.2:79064851-79064870 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG + chr1.2:79064779-79064798 MS.gene86933:CDS 40.0%
!!! TGGTACCATTGTTTTGGGAT+GGG - chr1.2:79064850-79064869 None:intergenic 40.0%
AACAGAGGAAGGGTTTGAGT+CGG - chr1.2:79065133-79065152 None:intergenic 45.0%
AGTCGATCGAGACTCAACTT+TGG + chr1.2:79064990-79065009 MS.gene86933:CDS 45.0%
CTCTCGTTGTTTACTCACCT+GGG + chr1.2:79064759-79064778 MS.gene86933:CDS 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr1.2:79064703-79064722 None:intergenic 45.0%
GATCGAGACTCAACTTTGGT+TGG + chr1.2:79064994-79065013 MS.gene86933:CDS 45.0%
GCTGATAGGCTTGTAATCCA+GGG + chr1.2:79065103-79065122 MS.gene86933:CDS 45.0%
GGTATTAAACTCACGCACGT+TGG - chr1.2:79064900-79064919 None:intergenic 45.0%
GGTGGTTGATCTGAGTTAGA+TGG - chr1.2:79064922-79064941 None:intergenic 45.0%
TCGAGAAAGTCACTTGCAAG+TGG - chr1.2:79064676-79064695 None:intergenic 45.0%
TCTCGTTGTTTACTCACCTG+GGG + chr1.2:79064760-79064779 MS.gene86933:CDS 45.0%
TCTTCTCGATGTCCAATAGG+TGG - chr1.2:79064940-79064959 None:intergenic 45.0%
TGCTGATAGGCTTGTAATCC+AGG + chr1.2:79065102-79065121 MS.gene86933:CDS 45.0%
TGGTACCATGCTATCCATTG+AGG + chr1.2:79064862-79064881 MS.gene86933:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG - chr1.2:79064631-79064650 None:intergenic 45.0%
AGCAACATCTGCACCACAGA+GGG - chr1.2:79064741-79064760 None:intergenic 50.0%
CGAGTCCCATCCCAAAACAA+TGG + chr1.2:79064842-79064861 MS.gene86933:CDS 50.0%
GAGACTCAACTTTGGTTGGC+TGG + chr1.2:79064998-79065017 MS.gene86933:CDS 50.0%
GCTCTCGTTGTTTACTCACC+TGG + chr1.2:79064758-79064777 MS.gene86933:CDS 50.0%
GTGAGCCTCAATGGATAGCA+TGG - chr1.2:79064870-79064889 None:intergenic 50.0%
TGACTGTATCAACACTGGGG+TGG - chr1.2:79064805-79064824 None:intergenic 50.0%
TGTTTACTCACCTGGGGAGA+AGG + chr1.2:79064766-79064785 MS.gene86933:CDS 50.0%
! ACAGAGGGTGCAAAACTCAC+TGG - chr1.2:79064726-79064745 None:intergenic 50.0%
! AGTGAGTTTTGCACCCTCTG+TGG + chr1.2:79064725-79064744 MS.gene86933:CDS 50.0%
! TCCCGTTGATGGGATGAACA+GGG + chr1.2:79065021-79065040 MS.gene86933:CDS 50.0%
! TCTCGATCGACTTACGCAAG+TGG - chr1.2:79064982-79065001 None:intergenic 50.0%
GAGCAACATCTGCACCACAG+AGG - chr1.2:79064742-79064761 None:intergenic 55.0%
GCCCTGTTCATCCCATCAAC+GGG - chr1.2:79065025-79065044 None:intergenic 55.0%
GGCCCTGTTCATCCCATCAA+CGG - chr1.2:79065026-79065045 None:intergenic 55.0%
TCGAGTGGAAGGAAAAGCCG+AGG + chr1.2:79064611-79064630 MS.gene86933:CDS 55.0%
! GTCCCGTTGATGGGATGAAC+AGG + chr1.2:79065020-79065039 MS.gene86933:CDS 55.0%
!! ACTCACGCACGTTGGTGCTA+CGG - chr1.2:79064892-79064911 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr1.2:79064686-79064705 MS.gene86933:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr1.2:79064687-79064706 MS.gene86933:CDS 55.0%
! GGTGCTACGGTGAGCCTCAA+TGG - chr1.2:79064879-79064898 None:intergenic 60.0%
! GGTTGGCTGGTCCCGTTGAT+GGG + chr1.2:79065011-79065030 MS.gene86933:CDS 60.0%
! TGGTTGGCTGGTCCCGTTGA+TGG + chr1.2:79065010-79065029 MS.gene86933:CDS 60.0%
! GGGTTTGAGTCGGAGCACCC+TGG - chr1.2:79065123-79065142 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 79064608 79065159 79064608 ID=MS.gene86933
chr1.2 mRNA 79064608 79065159 79064608 ID=MS.gene86933.t1;Parent=MS.gene86933
chr1.2 exon 79064608 79065159 79064608 ID=MS.gene86933.t1.exon1;Parent=MS.gene86933.t1
chr1.2 CDS 79064608 79065159 79064608 ID=cds.MS.gene86933.t1;Parent=MS.gene86933.t1
Gene Sequence

>MS.gene86933

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCCACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGTTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTACTCACCTGGGGAGAAGGTATTTTCATTTGGCCACCCCAGTGTTGATACAGTCATAGATCGTTATCTCTCTCGAGTCCCATCCCAAAACAATGGTACCATGCTATCCATTGAGGCTCACCGTAGCACCAACGTGCGTGAGTTTAATACCCATCTAACTCAGATCAACCACCTATTGGACATCGAGAAGAAACGTGCTGAAGAGTTGATCCACTTGCGTAAGTCGATCGAGACTCAACTTTGGTTGGCTGGTCCCGTTGATGGGATGAACAGGGCCCAACTTGAATTATTCAAGAAGGCTTTGGAGGAGCTTAAGAAACTTGTTGCACATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCGACTCAAACCCTTCCTCTGTTTTTTTGA
Protein sequence

>MS.gene86933.t1

MSSGRKSRGRQKIEMKKMSNESHLQVTFSKRRSGLFKKASEFCTLCGADVALVVYSPGEKVFSFGHPSVDTVIDRYLSRVPSQNNGTMLSIEAHRSTNVREFNTHLTQINHLLDIEKKRAEELIHLRKSIETQLWLAGPVDGMNRAQLELFKKALEELKKLVAHHADRLVIQGAPTQTLPLFF